diff --git a/DESCRIPTION b/DESCRIPTION
index 0dae5ca9..4eb5bfbc 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -2,7 +2,7 @@ Package: genieclust
 Type: Package
 Title: The Genie++ Hierarchical Clustering Algorithm with Noise Points Detection
 Version: 0.9.8
-Date: 2021-01-07
+Date: 2021-01-08
 Authors@R: c(
     person("Marek", "Gagolewski",
         role = c("aut", "cre", "cph"),
diff --git a/Makefile b/Makefile
index 100ee951..6d7cbe1d 100644
--- a/Makefile
+++ b/Makefile
@@ -24,6 +24,9 @@ rd2rst:
 	# https://github.com/gagolews/Rd2rst
 	cd devel/sphinx && Rscript -e "Rd2rst::Rd2rst('genieclust')" && cd ../../
 
+news:
+	cd devel/sphinx && pandoc ../../NEWS -f markdown -t rst -o news.rst
+
 #rapiold:
 	#Rscript -e "Rd2md::ReferenceManual()"
 	#Rscript -e "f <- readLines('Reference_Manual_genieclust.md');" \
@@ -36,7 +39,7 @@ rd2rst:
 	##rstlisttable --in-place devel/sphinx/r.rst
 	#rm -f Reference_Manual_genieclust.md r.md
 
-sphinx: python r weave rd2rst
+sphinx: python r weave rd2rst news
 	rm -rf devel/sphinx/_build/
 	cd devel/sphinx && make html && cd ../../
 	rm -rf docs/
@@ -67,7 +70,7 @@ r-build:
 
 r-check: r-build
 	#Rscript -e 'devtools::check(cran=TRUE, remote=TRUE, manual=TRUE)'  # avoid redundant dependencies
-	cd .. && R CMD check `ls -t genieclust*.tar.gz | head -1` --no-manual #  --as-cran
+	cd .. && R CMD check `ls -t genieclust*.tar.gz | head -1` --no-manual --as-cran
 
 clean:
 	python3 setup.py clean
diff --git a/NEWS b/NEWS
index 9b97af3c..ea93890d 100644
--- a/NEWS
+++ b/NEWS
@@ -1,9 +1,9 @@
-# `genieclust` Package NEWS
+# What's New in *genieclust*
 
 
-## genieclust 0.9.8 (2021-xx-xx)
+## genieclust 0.9.8 (2021-01-08)
 
--   ...
+-   [Bugfix] [R] Fixed build errors on Solaris: `_X` is a reserved identifier.
 
 
 ## genieclust 0.9.7 (2021-01-07)
@@ -22,19 +22,19 @@
 
 -   [Python] `nmslib` is now required.
 
--   [R] switched to `tinytest` for unit testing.
+-   [R] Switched to `tinytest` for unit testing.
 
--   [R] fixed the examples that relied on a now-changed API of `emstreeR`.
+-   [R] Fixed the examples that relied on the amended API of `emstreeR`.
 
 
 ## genieclust 0.9.4 (2020-07-31)
 
--   [BUGFIX] [R] Fix build on Solaris.
+-   [Bugfix] [R] Fix build on Solaris.
 
 
 ## genieclust 0.9.3 (2020-07-25)
 
--   [BUGFIX] [PYTHON] Code coverage CI added. Fixed some minor inconsistencies.
+-   [Bugfix] [Python] Code coverage CI added. Fixed some minor inconsistencies.
     Automated the `bdist` build chain.
 
 -   [R] Updated DESCRIPTION to meet the CRAN policies.
@@ -42,30 +42,30 @@
 
 ## genieclust 0.9.2 (2020-07-22)
 
--   [BUGFIX] [PYTHON] Fixed broken build script for OS X with no OpenMP.
+-   [BUGFIX] [Python] Fixed broken build script for OS X with no OpenMP.
 
 
 ## genieclust 0.9.1 (2020-07-18)
 
--   [GENERAL] The package has been completely rewritten.
+-   [General] The package has been completely rewritten.
     The core functionality is now implemented in C++ (with OpenMP).
 
--   [GENERAL] Clustering with respect to HDBSCAN*-like
+-   [General] Clustering with respect to HDBSCAN*-like
     mutual reachability distances is supported.
 
--   [GENERAL] The parallelised Jarnik-Prim algorithm now supports on-the-fly
+-   [General] The parallelised Jarnik-Prim algorithm now supports on-the-fly
     distance computations. Euclidean minimum spanning tree can be
     determined with `mlpack`, which is much faster in low-dimensional spaces.
 
 -   [R] R version is now available.
 
--   [PYTHON] [EXPERIMENTAL] The GIc algorithm proposed by Anna Cena
+-   [Python] [Experimental] The GIc algorithm proposed by Anna Cena
     in her 2018 PhD thesis was added.
 
--   [PYTHON] Approximate version based on nearest neighbour graphs produced
+-   [Python] Approximate version based on nearest neighbour graphs produced
     by `nmslib` was added.
 
 
 ## genieclust 0.1a2 (2018-05-23)
 
--   [PYTHON] Initial PyPI release.
+-   [Python] Initial PyPI release.
diff --git a/R/RcppExports.R b/R/RcppExports.R
index d1ca23ce..b674089e 100644
--- a/R/RcppExports.R
+++ b/R/RcppExports.R
@@ -150,23 +150,23 @@ pair_sets_index <- function(x, y = NULL) {
 }
 
 .emst_mlpack <- function(X) {
-    .Call(`_genieclust___emst_mlpack`, X)
+    .Call(`_genieclust_dot_emst_mlpack`, X)
 }
 
-.gclust <- function(mst, gini_threshold, verbose) {
-    .Call(`_genieclust___gclust`, mst, gini_threshold, verbose)
+.mst.default <- function(X, distance = "euclidean", M = 1L, cast_float32 = TRUE, verbose = FALSE) {
+    .Call(`_genieclust_dot_mst_default`, X, distance, M, cast_float32, verbose)
 }
 
-.genie <- function(mst, k, gini_threshold, postprocess, detect_noise, verbose) {
-    .Call(`_genieclust___genie`, mst, k, gini_threshold, postprocess, detect_noise, verbose)
+.mst.dist <- function(d, M = 1L, verbose = FALSE) {
+    .Call(`_genieclust_dot_mst_dist`, d, M, verbose)
 }
 
-.mst.default <- function(X, distance = "euclidean", M = 1L, cast_float32 = TRUE, verbose = FALSE) {
-    .Call(`_genieclust_mst_default`, X, distance, M, cast_float32, verbose)
+.genie <- function(mst, k, gini_threshold, postprocess, detect_noise, verbose) {
+    .Call(`_genieclust_dot_genie`, mst, k, gini_threshold, postprocess, detect_noise, verbose)
 }
 
-.mst.dist <- function(d, M = 1L, verbose = FALSE) {
-    .Call(`_genieclust_mst_dist`, d, M, verbose)
+.gclust <- function(mst, gini_threshold, verbose) {
+    .Call(`_genieclust_dot_gclust`, mst, gini_threshold, verbose)
 }
 
 #' @title Inequity (Inequality) Measures
diff --git a/devel/sphinx/index.rst b/devel/sphinx/index.rst
index c891d7b8..e6186706 100644
--- a/devel/sphinx/index.rst
+++ b/devel/sphinx/index.rst
@@ -95,6 +95,7 @@ any contributions are welcome.
 
     genieclust
     rapi
+    news
 
 .. toctree::
     :maxdepth: 2
diff --git a/devel/sphinx/news.rst b/devel/sphinx/news.rst
new file mode 100644
index 00000000..4541a1de
--- /dev/null
+++ b/devel/sphinx/news.rst
@@ -0,0 +1,76 @@
+What’s New in *genieclust*
+==========================
+
+genieclust 0.9.8 (2021-01-08)
+-----------------------------
+
+-  [Bugfix] [R] Fixed build errors on Solaris: ``_X`` is a reserved
+   identifier.
+
+genieclust 0.9.7 (2021-01-07)
+-----------------------------
+
+-  [Python] Python >= 3.7 is now required (implied by ``numpy``).
+
+-  [R] Use ``RcppMLPACK`` directly instead of via a wrapper,
+   ``emstreeR``.
+
+genieclust 0.9.6 (2021-01-05)
+-----------------------------
+
+-  [Python] Python >= 3.7 is now required (implied by ``numpy``).
+
+genieclust 0.9.5 (2021-01-04)
+-----------------------------
+
+-  [Python] ``nmslib`` is now required.
+
+-  [R] Switched to ``tinytest`` for unit testing.
+
+-  [R] Fixed the examples that relied on the amended API of
+   ``emstreeR``.
+
+genieclust 0.9.4 (2020-07-31)
+-----------------------------
+
+-  [Bugfix] [R] Fix build on Solaris.
+
+genieclust 0.9.3 (2020-07-25)
+-----------------------------
+
+-  [Bugfix] [Python] Code coverage CI added. Fixed some minor
+   inconsistencies. Automated the ``bdist`` build chain.
+
+-  [R] Updated DESCRIPTION to meet the CRAN policies.
+
+genieclust 0.9.2 (2020-07-22)
+-----------------------------
+
+-  [BUGFIX] [Python] Fixed broken build script for OS X with no OpenMP.
+
+genieclust 0.9.1 (2020-07-18)
+-----------------------------
+
+-  [General] The package has been completely rewritten. The core
+   functionality is now implemented in C++ (with OpenMP).
+
+-  [General] Clustering with respect to HDBSCAN*-like mutual
+   reachability distances is supported.
+
+-  [General] The parallelised Jarnik-Prim algorithm now supports
+   on-the-fly distance computations. Euclidean minimum spanning tree can
+   be determined with ``mlpack``, which is much faster in
+   low-dimensional spaces.
+
+-  [R] R version is now available.
+
+-  [Python] [Experimental] The GIc algorithm proposed by Anna Cena in
+   her 2018 PhD thesis was added.
+
+-  [Python] Approximate version based on nearest neighbour graphs
+   produced by ``nmslib`` was added.
+
+genieclust 0.1a2 (2018-05-23)
+-----------------------------
+
+-  [Python] Initial PyPI release.
diff --git a/docs/_sources/index.rst.txt b/docs/_sources/index.rst.txt
index c891d7b8..e6186706 100644
--- a/docs/_sources/index.rst.txt
+++ b/docs/_sources/index.rst.txt
@@ -95,6 +95,7 @@ any contributions are welcome.
 
     genieclust
     rapi
+    news
 
 .. toctree::
     :maxdepth: 2
diff --git a/docs/_sources/news.rst.txt b/docs/_sources/news.rst.txt
new file mode 100644
index 00000000..4541a1de
--- /dev/null
+++ b/docs/_sources/news.rst.txt
@@ -0,0 +1,76 @@
+What’s New in *genieclust*
+==========================
+
+genieclust 0.9.8 (2021-01-08)
+-----------------------------
+
+-  [Bugfix] [R] Fixed build errors on Solaris: ``_X`` is a reserved
+   identifier.
+
+genieclust 0.9.7 (2021-01-07)
+-----------------------------
+
+-  [Python] Python >= 3.7 is now required (implied by ``numpy``).
+
+-  [R] Use ``RcppMLPACK`` directly instead of via a wrapper,
+   ``emstreeR``.
+
+genieclust 0.9.6 (2021-01-05)
+-----------------------------
+
+-  [Python] Python >= 3.7 is now required (implied by ``numpy``).
+
+genieclust 0.9.5 (2021-01-04)
+-----------------------------
+
+-  [Python] ``nmslib`` is now required.
+
+-  [R] Switched to ``tinytest`` for unit testing.
+
+-  [R] Fixed the examples that relied on the amended API of
+   ``emstreeR``.
+
+genieclust 0.9.4 (2020-07-31)
+-----------------------------
+
+-  [Bugfix] [R] Fix build on Solaris.
+
+genieclust 0.9.3 (2020-07-25)
+-----------------------------
+
+-  [Bugfix] [Python] Code coverage CI added. Fixed some minor
+   inconsistencies. Automated the ``bdist`` build chain.
+
+-  [R] Updated DESCRIPTION to meet the CRAN policies.
+
+genieclust 0.9.2 (2020-07-22)
+-----------------------------
+
+-  [BUGFIX] [Python] Fixed broken build script for OS X with no OpenMP.
+
+genieclust 0.9.1 (2020-07-18)
+-----------------------------
+
+-  [General] The package has been completely rewritten. The core
+   functionality is now implemented in C++ (with OpenMP).
+
+-  [General] Clustering with respect to HDBSCAN*-like mutual
+   reachability distances is supported.
+
+-  [General] The parallelised Jarnik-Prim algorithm now supports
+   on-the-fly distance computations. Euclidean minimum spanning tree can
+   be determined with ``mlpack``, which is much faster in
+   low-dimensional spaces.
+
+-  [R] R version is now available.
+
+-  [Python] [Experimental] The GIc algorithm proposed by Anna Cena in
+   her 2018 PhD thesis was added.
+
+-  [Python] Approximate version based on nearest neighbour graphs
+   produced by ``nmslib`` was added.
+
+genieclust 0.1a2 (2018-05-23)
+-----------------------------
+
+-  [Python] Initial PyPI release.
diff --git a/docs/_static/documentation_options.js b/docs/_static/documentation_options.js
index c84f1f77..1aa910a8 100644
--- a/docs/_static/documentation_options.js
+++ b/docs/_static/documentation_options.js
@@ -1,6 +1,6 @@
 var DOCUMENTATION_OPTIONS = {
     URL_ROOT: document.getElementById("documentation_options").getAttribute('data-url_root'),
-    VERSION: '0.9.6',
+    VERSION: '0.9.8',
     LANGUAGE: 'None',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',
diff --git a/docs/genieclust.html b/docs/genieclust.html
index 758595e7..db15c2de 100644
--- a/docs/genieclust.html
+++ b/docs/genieclust.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Python Package genieclust Reference &mdash; genieclust 0.9.6 documentation</title>
+  <title>Python Package genieclust Reference &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -114,6 +114,7 @@
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/genieclust_compare_partitions.html b/docs/genieclust_compare_partitions.html
index bdec505f..a3dd7e70 100644
--- a/docs/genieclust_compare_partitions.html
+++ b/docs/genieclust_compare_partitions.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>genieclust.compare_partitions &mdash; genieclust 0.9.6 documentation</title>
+  <title>genieclust.compare_partitions &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -114,6 +114,7 @@
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/genieclust_genie.html b/docs/genieclust_genie.html
index 09867276..da029b80 100644
--- a/docs/genieclust_genie.html
+++ b/docs/genieclust_genie.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>genieclust.Genie &mdash; genieclust 0.9.6 documentation</title>
+  <title>genieclust.Genie &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -114,6 +114,7 @@
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/genieclust_inequity.html b/docs/genieclust_inequity.html
index ff398d37..26d39107 100644
--- a/docs/genieclust_inequity.html
+++ b/docs/genieclust_inequity.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>genieclust.inequity &mdash; genieclust 0.9.6 documentation</title>
+  <title>genieclust.inequity &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -114,6 +114,7 @@
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/genieclust_internal.html b/docs/genieclust_internal.html
index 7b9ff1ef..c5320864 100644
--- a/docs/genieclust_internal.html
+++ b/docs/genieclust_internal.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>genieclust.internal &mdash; genieclust 0.9.6 documentation</title>
+  <title>genieclust.internal &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -114,6 +114,7 @@
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/genieclust_plots-1.pdf b/docs/genieclust_plots-1.pdf
index 10cafc9c..741996c7 100644
Binary files a/docs/genieclust_plots-1.pdf and b/docs/genieclust_plots-1.pdf differ
diff --git a/docs/genieclust_plots-2.pdf b/docs/genieclust_plots-2.pdf
index 440efa1c..c8cc542a 100644
Binary files a/docs/genieclust_plots-2.pdf and b/docs/genieclust_plots-2.pdf differ
diff --git a/docs/genieclust_plots-3.pdf b/docs/genieclust_plots-3.pdf
index 3ede8c3a..be60abf7 100644
Binary files a/docs/genieclust_plots-3.pdf and b/docs/genieclust_plots-3.pdf differ
diff --git a/docs/genieclust_plots-4.pdf b/docs/genieclust_plots-4.pdf
index 74dc7ac4..3e477c48 100644
Binary files a/docs/genieclust_plots-4.pdf and b/docs/genieclust_plots-4.pdf differ
diff --git a/docs/genieclust_plots.html b/docs/genieclust_plots.html
index cbfa409b..c536782e 100644
--- a/docs/genieclust_plots.html
+++ b/docs/genieclust_plots.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>genieclust.plots &mdash; genieclust 0.9.6 documentation</title>
+  <title>genieclust.plots &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -114,6 +114,7 @@
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/genieclust_tools.html b/docs/genieclust_tools.html
index 78387583..f8a64791 100644
--- a/docs/genieclust_tools.html
+++ b/docs/genieclust_tools.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>genieclust.tools &mdash; genieclust 0.9.6 documentation</title>
+  <title>genieclust.tools &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -114,6 +114,7 @@
 </ul>
 </li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/genindex.html b/docs/genindex.html
index 1f7581ab..90195b0a 100644
--- a/docs/genindex.html
+++ b/docs/genindex.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Index &mdash; genieclust 0.9.6 documentation</title>
+  <title>Index &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -64,7 +64,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -104,6 +104,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/index.html b/docs/index.html
index 00654a8c..a834c65f 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>genieclust: Fast and Robust Hierarchical Clustering with Noise Point Detection &mdash; genieclust 0.9.6 documentation</title>
+  <title>genieclust: Fast and Robust Hierarchical Clustering with Noise Point Detection &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -65,7 +65,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -105,6 +105,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
@@ -301,6 +302,18 @@ <h1><cite>genieclust</cite>: Fast and Robust Hierarchical Clustering with Noise
 <li class="toctree-l2"><a class="reference internal" href="rapi/mst.html">mst: Minimum Spanning Tree of the Pairwise Distance Graph</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a><ul>
+<li class="toctree-l2"><a class="reference internal" href="news.html#genieclust-0-9-8-2021-01-08">genieclust 0.9.8 (2021-01-08)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="news.html#genieclust-0-9-7-2021-01-07">genieclust 0.9.7 (2021-01-07)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="news.html#genieclust-0-9-6-2021-01-05">genieclust 0.9.6 (2021-01-05)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="news.html#genieclust-0-9-5-2021-01-04">genieclust 0.9.5 (2021-01-04)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="news.html#genieclust-0-9-4-2020-07-31">genieclust 0.9.4 (2020-07-31)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="news.html#genieclust-0-9-3-2020-07-25">genieclust 0.9.3 (2020-07-25)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="news.html#genieclust-0-9-2-2020-07-22">genieclust 0.9.2 (2020-07-22)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="news.html#genieclust-0-9-1-2020-07-18">genieclust 0.9.1 (2020-07-18)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="news.html#genieclust-0-1a2-2018-05-23">genieclust 0.1a2 (2018-05-23)</a></li>
+</ul>
+</li>
 </ul>
 </div>
 <div class="toctree-wrapper compound">
diff --git a/docs/news.html b/docs/news.html
new file mode 100644
index 00000000..0280bff8
--- /dev/null
+++ b/docs/news.html
@@ -0,0 +1,340 @@
+
+
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
+<head>
+  <meta charset="utf-8">
+  
+  <meta name="viewport" content="width=device-width, initial-scale=1.0">
+  
+  <title>What’s New in genieclust &mdash; genieclust 0.9.8 documentation</title>
+  
+
+  
+  <link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
+  <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+  <link rel="stylesheet" href="_static/graphviz.css" type="text/css" />
+  <link rel="stylesheet" href="_static/css/custom.css" type="text/css" />
+
+  
+  
+  
+  
+    <link rel="canonical" href="https://genieclust.gagolewski.com/news.html"/>
+  
+
+  
+  <!--[if lt IE 9]>
+    <script src="_static/js/html5shiv.min.js"></script>
+  <![endif]-->
+  
+    
+      <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
+        <script src="_static/jquery.js"></script>
+        <script src="_static/underscore.js"></script>
+        <script src="_static/doctools.js"></script>
+        <script src="_static/language_data.js"></script>
+        <script async="async" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.7/latest.js?config=TeX-AMS-MML_HTMLorMML"></script>
+    
+    <script type="text/javascript" src="_static/js/theme.js"></script>
+
+    
+    <link rel="index" title="Index" href="genindex.html" />
+    <link rel="search" title="Search" href="search.html" />
+    <link rel="next" title="Benchmarks — Detailed Results" href="weave/benchmarks_details.html" />
+    <link rel="prev" title="mst: Minimum Spanning Tree of the Pairwise Distance Graph" href="rapi/mst.html" /> 
+</head>
+
+<body class="wy-body-for-nav">
+
+   
+  <div class="wy-grid-for-nav">
+    
+    <nav data-toggle="wy-nav-shift" class="wy-nav-side">
+      <div class="wy-side-scroll">
+        <div class="wy-side-nav-search" >
+          
+
+          
+            <a href="index.html" class="icon icon-home" alt="Documentation Home"> genieclust
+          
+
+          
+          </a>
+
+          
+            
+            
+              <div class="version">
+                0.9.8
+              </div>
+            
+          
+
+          
+<div role="search">
+  <form id="rtd-search-form" class="wy-form" action="search.html" method="get">
+    <input type="text" name="q" placeholder="Search docs" />
+    <input type="hidden" name="check_keywords" value="yes" />
+    <input type="hidden" name="area" value="default" />
+  </form>
+</div>
+
+          
+        </div>
+
+        
+        <div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
+          
+            
+            
+              
+            
+            
+              <p class="caption"><span class="caption-text">Examples and Tutorials</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="weave/basics.html">Basics</a></li>
+<li class="toctree-l1"><a class="reference internal" href="weave/sklearn_toy_example.html">Comparing Algorithms on Toy Datasets</a></li>
+<li class="toctree-l1"><a class="reference internal" href="weave/benchmarks_ar.html">Benchmarks (How Good Is It?)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="weave/timings.html">Timings (How Fast Is It?)</a></li>
+<li class="toctree-l1"><a class="reference internal" href="weave/noise.html">Clustering with Noise Points Detection</a></li>
+<li class="toctree-l1"><a class="reference internal" href="weave/sparse.html">Example: Sparse Data and Movie Recommendation</a></li>
+<li class="toctree-l1"><a class="reference internal" href="weave/string.html">Example: String Data and Grouping of DNA</a></li>
+<li class="toctree-l1"><a class="reference internal" href="weave/r.html">R Interface Examples</a></li>
+</ul>
+<p class="caption"><span class="caption-text">API Documentation</span></p>
+<ul class="current">
+<li class="toctree-l1"><a class="reference internal" href="genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1 current"><a class="current reference internal" href="#">What’s New in <em>genieclust</em></a><ul>
+<li class="toctree-l2"><a class="reference internal" href="#genieclust-0-9-8-2021-01-08">genieclust 0.9.8 (2021-01-08)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#genieclust-0-9-7-2021-01-07">genieclust 0.9.7 (2021-01-07)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#genieclust-0-9-6-2021-01-05">genieclust 0.9.6 (2021-01-05)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#genieclust-0-9-5-2021-01-04">genieclust 0.9.5 (2021-01-04)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#genieclust-0-9-4-2020-07-31">genieclust 0.9.4 (2020-07-31)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#genieclust-0-9-3-2020-07-25">genieclust 0.9.3 (2020-07-25)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#genieclust-0-9-2-2020-07-22">genieclust 0.9.2 (2020-07-22)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#genieclust-0-9-1-2020-07-18">genieclust 0.9.1 (2020-07-18)</a></li>
+<li class="toctree-l2"><a class="reference internal" href="#genieclust-0-1a2-2018-05-23">genieclust 0.1a2 (2018-05-23)</a></li>
+</ul>
+</li>
+</ul>
+<p class="caption"><span class="caption-text">External Links</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference external" href="https://github.com/gagolews/genieclust">Source code (GitHub)</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://github.com/gagolews/genieclust/issues">Issues and Splendid Ideas Tracker</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://pypi.org/project/genieclust/">PyPI</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://cran.r-project.org/web/packages/genieclust/">CRAN</a></li>
+</ul>
+<p class="caption"><span class="caption-text">Appendix</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="weave/benchmarks_details.html">Benchmarks — Detailed Results</a></li>
+<li class="toctree-l1"><a class="reference internal" href="weave/benchmarks_approx.html">Benchmarks — Approximate Method</a></li>
+<li class="toctree-l1"><a class="reference internal" href="z_bibliography.html">References</a></li>
+</ul>
+
+            
+          
+        </div>
+        
+      </div>
+    </nav>
+
+    <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap">
+
+      
+      <nav class="wy-nav-top" aria-label="top navigation">
+        
+          <i data-toggle="wy-nav-top" class="fa fa-bars"></i>
+          <a href="index.html">genieclust</a>
+        
+      </nav>
+
+
+      <div class="wy-nav-content">
+        
+        <div class="rst-content">
+        
+          
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+<div role="navigation" aria-label="breadcrumbs navigation">
+
+  <ul class="wy-breadcrumbs">
+    
+      <li><a href="index.html" class="icon icon-home"></a> &raquo;</li>
+        
+      <li>What’s New in <em>genieclust</em></li>
+    
+    
+      <li class="wy-breadcrumbs-aside">
+        
+            
+        
+      </li>
+    
+  </ul>
+
+  
+  <div class="rst-breadcrumbs-buttons" role="navigation" aria-label="breadcrumb navigation">
+      
+        <a href="weave/benchmarks_details.html" class="btn btn-neutral float-right" title="Benchmarks — Detailed Results" accesskey="n">Next <span class="fa fa-arrow-circle-right"></span></a>
+      
+      
+        <a href="rapi/mst.html" class="btn btn-neutral float-left" title="mst: Minimum Spanning Tree of the Pairwise Distance Graph" accesskey="p"><span class="fa fa-arrow-circle-left"></span> Previous</a>
+      
+  </div>
+  
+  <hr/>
+</div>
+          <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article">
+           <div itemprop="articleBody">
+            
+  <div class="section" id="whats-new-in-genieclust">
+<h1>What’s New in <em>genieclust</em><a class="headerlink" href="#whats-new-in-genieclust" title="Permalink to this headline">¶</a></h1>
+<div class="section" id="genieclust-0-9-8-2021-01-08">
+<h2>genieclust 0.9.8 (2021-01-08)<a class="headerlink" href="#genieclust-0-9-8-2021-01-08" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p>[Bugfix] [R] Fixed build errors on Solaris: <code class="docutils literal notranslate"><span class="pre">_X</span></code> is a reserved
+identifier.</p></li>
+</ul>
+</div>
+<div class="section" id="genieclust-0-9-7-2021-01-07">
+<h2>genieclust 0.9.7 (2021-01-07)<a class="headerlink" href="#genieclust-0-9-7-2021-01-07" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p>[Python] Python &gt;= 3.7 is now required (implied by <code class="docutils literal notranslate"><span class="pre">numpy</span></code>).</p></li>
+<li><p>[R] Use <code class="docutils literal notranslate"><span class="pre">RcppMLPACK</span></code> directly instead of via a wrapper,
+<code class="docutils literal notranslate"><span class="pre">emstreeR</span></code>.</p></li>
+</ul>
+</div>
+<div class="section" id="genieclust-0-9-6-2021-01-05">
+<h2>genieclust 0.9.6 (2021-01-05)<a class="headerlink" href="#genieclust-0-9-6-2021-01-05" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p>[Python] Python &gt;= 3.7 is now required (implied by <code class="docutils literal notranslate"><span class="pre">numpy</span></code>).</p></li>
+</ul>
+</div>
+<div class="section" id="genieclust-0-9-5-2021-01-04">
+<h2>genieclust 0.9.5 (2021-01-04)<a class="headerlink" href="#genieclust-0-9-5-2021-01-04" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p>[Python] <code class="docutils literal notranslate"><span class="pre">nmslib</span></code> is now required.</p></li>
+<li><p>[R] Switched to <code class="docutils literal notranslate"><span class="pre">tinytest</span></code> for unit testing.</p></li>
+<li><p>[R] Fixed the examples that relied on the amended API of
+<code class="docutils literal notranslate"><span class="pre">emstreeR</span></code>.</p></li>
+</ul>
+</div>
+<div class="section" id="genieclust-0-9-4-2020-07-31">
+<h2>genieclust 0.9.4 (2020-07-31)<a class="headerlink" href="#genieclust-0-9-4-2020-07-31" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p>[Bugfix] [R] Fix build on Solaris.</p></li>
+</ul>
+</div>
+<div class="section" id="genieclust-0-9-3-2020-07-25">
+<h2>genieclust 0.9.3 (2020-07-25)<a class="headerlink" href="#genieclust-0-9-3-2020-07-25" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p>[Bugfix] [Python] Code coverage CI added. Fixed some minor
+inconsistencies. Automated the <code class="docutils literal notranslate"><span class="pre">bdist</span></code> build chain.</p></li>
+<li><p>[R] Updated DESCRIPTION to meet the CRAN policies.</p></li>
+</ul>
+</div>
+<div class="section" id="genieclust-0-9-2-2020-07-22">
+<h2>genieclust 0.9.2 (2020-07-22)<a class="headerlink" href="#genieclust-0-9-2-2020-07-22" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p>[BUGFIX] [Python] Fixed broken build script for OS X with no OpenMP.</p></li>
+</ul>
+</div>
+<div class="section" id="genieclust-0-9-1-2020-07-18">
+<h2>genieclust 0.9.1 (2020-07-18)<a class="headerlink" href="#genieclust-0-9-1-2020-07-18" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p>[General] The package has been completely rewritten. The core
+functionality is now implemented in C++ (with OpenMP).</p></li>
+<li><p>[General] Clustering with respect to HDBSCAN*-like mutual
+reachability distances is supported.</p></li>
+<li><p>[General] The parallelised Jarnik-Prim algorithm now supports
+on-the-fly distance computations. Euclidean minimum spanning tree can
+be determined with <code class="docutils literal notranslate"><span class="pre">mlpack</span></code>, which is much faster in
+low-dimensional spaces.</p></li>
+<li><p>[R] R version is now available.</p></li>
+<li><p>[Python] [Experimental] The GIc algorithm proposed by Anna Cena in
+her 2018 PhD thesis was added.</p></li>
+<li><p>[Python] Approximate version based on nearest neighbour graphs
+produced by <code class="docutils literal notranslate"><span class="pre">nmslib</span></code> was added.</p></li>
+</ul>
+</div>
+<div class="section" id="genieclust-0-1a2-2018-05-23">
+<h2>genieclust 0.1a2 (2018-05-23)<a class="headerlink" href="#genieclust-0-1a2-2018-05-23" title="Permalink to this headline">¶</a></h2>
+<ul class="simple">
+<li><p>[Python] Initial PyPI release.</p></li>
+</ul>
+</div>
+</div>
+
+
+           </div>
+           
+          </div>
+          <footer>
+  
+    <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
+      
+        <a href="weave/benchmarks_details.html" class="btn btn-neutral float-right" title="Benchmarks — Detailed Results" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
+      
+      
+        <a href="rapi/mst.html" class="btn btn-neutral float-left" title="mst: Minimum Spanning Tree of the Pairwise Distance Graph" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
+      
+    </div>
+  
+
+  <hr/>
+
+  <div role="contentinfo">
+    <p>
+        
+        &copy; Copyright 2021, Marek Gagolewski
+
+    </p>
+  </div>
+    
+    
+    
+    Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a
+    
+    <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a>
+    
+    provided by <a href="https://readthedocs.org">Read the Docs</a>. 
+
+</footer>
+
+        </div>
+      </div>
+
+    </section>
+
+  </div>
+  
+
+  <script type="text/javascript">
+      jQuery(function () {
+          SphinxRtdTheme.Navigation.enable(true);
+      });
+  </script>
+
+  
+  
+    
+   
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/objects.inv b/docs/objects.inv
index 72cbdb6d..49ac51e8 100644
Binary files a/docs/objects.inv and b/docs/objects.inv differ
diff --git a/docs/py-modindex.html b/docs/py-modindex.html
index 9104c2ab..79313e7a 100644
--- a/docs/py-modindex.html
+++ b/docs/py-modindex.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Python Module Index &mdash; genieclust 0.9.6 documentation</title>
+  <title>Python Module Index &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -67,7 +67,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -107,6 +107,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/rapi.html b/docs/rapi.html
index 3436a404..81da50b9 100644
--- a/docs/rapi.html
+++ b/docs/rapi.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>R Package genieclust Reference &mdash; genieclust 0.9.6 documentation</title>
+  <title>R Package genieclust Reference &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -114,6 +114,7 @@
 <li class="toctree-l2"><a class="reference internal" href="rapi/mst.html">mst: Minimum Spanning Tree of the Pairwise Distance Graph</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/rapi/comparing_partitions.html b/docs/rapi/comparing_partitions.html
index 828eb4e3..c9ab2800 100644
--- a/docs/rapi/comparing_partitions.html
+++ b/docs/rapi/comparing_partitions.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>comparing_partitions: Pairwise Partition Similarity Scores &mdash; genieclust 0.9.6 documentation</title>
+  <title>comparing_partitions: Pairwise Partition Similarity Scores &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -123,6 +123,7 @@
 <li class="toctree-l2"><a class="reference internal" href="mst.html">mst: Minimum Spanning Tree of the Pairwise Distance Graph</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/rapi/emst_mlpack.html b/docs/rapi/emst_mlpack.html
index aeb29ad0..573ed3c2 100644
--- a/docs/rapi/emst_mlpack.html
+++ b/docs/rapi/emst_mlpack.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>emst_mlpack: Euclidean Minimum Spanning Tree &mdash; genieclust 0.9.6 documentation</title>
+  <title>emst_mlpack: Euclidean Minimum Spanning Tree &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -121,6 +121,7 @@
 <li class="toctree-l2"><a class="reference internal" href="mst.html">mst: Minimum Spanning Tree of the Pairwise Distance Graph</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/rapi/gclust.html b/docs/rapi/gclust.html
index 64f2acc5..4c5736ec 100644
--- a/docs/rapi/gclust.html
+++ b/docs/rapi/gclust.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>gclust: The Genie++ Hierarchical Clustering Algorithm &mdash; genieclust 0.9.6 documentation</title>
+  <title>gclust: The Genie++ Hierarchical Clustering Algorithm &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -124,6 +124,7 @@
 <li class="toctree-l2"><a class="reference internal" href="mst.html">mst: Minimum Spanning Tree of the Pairwise Distance Graph</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/rapi/genieclust-package.html b/docs/rapi/genieclust-package.html
index 9d49ab34..5c03594f 100644
--- a/docs/rapi/genieclust-package.html
+++ b/docs/rapi/genieclust-package.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>genieclust-package: The Genie++ Hierarchical Clustering Algorithm (with Extras) &mdash; genieclust 0.9.6 documentation</title>
+  <title>genieclust-package: The Genie++ Hierarchical Clustering Algorithm (with Extras) &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -118,6 +118,7 @@
 <li class="toctree-l2"><a class="reference internal" href="mst.html">mst: Minimum Spanning Tree of the Pairwise Distance Graph</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/rapi/inequity.html b/docs/rapi/inequity.html
index a741ac77..0d2b1b0f 100644
--- a/docs/rapi/inequity.html
+++ b/docs/rapi/inequity.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>inequity: Inequity (Inequality) Measures &mdash; genieclust 0.9.6 documentation</title>
+  <title>inequity: Inequity (Inequality) Measures &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -123,6 +123,7 @@
 <li class="toctree-l2"><a class="reference internal" href="mst.html">mst: Minimum Spanning Tree of the Pairwise Distance Graph</a></li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/rapi/mst.html b/docs/rapi/mst.html
index 591f1c55..a2d8b72b 100644
--- a/docs/rapi/mst.html
+++ b/docs/rapi/mst.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>mst: Minimum Spanning Tree of the Pairwise Distance Graph &mdash; genieclust 0.9.6 documentation</title>
+  <title>mst: Minimum Spanning Tree of the Pairwise Distance Graph &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -41,7 +41,7 @@
     
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
-    <link rel="next" title="Benchmarks — Detailed Results" href="../weave/benchmarks_details.html" />
+    <link rel="next" title="What’s New in genieclust" href="../news.html" />
     <link rel="prev" title="inequity: Inequity (Inequality) Measures" href="inequity.html" /> 
 </head>
 
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -124,6 +124,7 @@
 </li>
 </ul>
 </li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
@@ -199,7 +200,7 @@
   
   <div class="rst-breadcrumbs-buttons" role="navigation" aria-label="breadcrumb navigation">
       
-        <a href="../weave/benchmarks_details.html" class="btn btn-neutral float-right" title="Benchmarks — Detailed Results" accesskey="n">Next <span class="fa fa-arrow-circle-right"></span></a>
+        <a href="../news.html" class="btn btn-neutral float-right" title="What’s New in genieclust" accesskey="n">Next <span class="fa fa-arrow-circle-right"></span></a>
       
       
         <a href="inequity.html" class="btn btn-neutral float-left" title="inequity: Inequity (Inequality) Measures" accesskey="p"><span class="fa fa-arrow-circle-left"></span> Previous</a>
@@ -310,7 +311,7 @@ <h2>Examples<a class="headerlink" href="#examples" title="Permalink to this head
   
     <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation">
       
-        <a href="../weave/benchmarks_details.html" class="btn btn-neutral float-right" title="Benchmarks — Detailed Results" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
+        <a href="../news.html" class="btn btn-neutral float-right" title="What’s New in genieclust" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
       
       
         <a href="inequity.html" class="btn btn-neutral float-left" title="inequity: Inequity (Inequality) Measures" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
diff --git a/docs/search.html b/docs/search.html
index 562fa304..c46e667c 100644
--- a/docs/search.html
+++ b/docs/search.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Search &mdash; genieclust 0.9.6 documentation</title>
+  <title>Search &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -106,6 +106,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/searchindex.js b/docs/searchindex.js
index 8f464d58..643472ec 100644
--- a/docs/searchindex.js
+++ b/docs/searchindex.js
@@ -1 +1 @@
-Search.setIndex({docnames:["genieclust","genieclust_compare_partitions","genieclust_genie","genieclust_inequity","genieclust_internal","genieclust_plots","genieclust_tools","index","rapi","rapi/comparing_partitions","rapi/emst_mlpack","rapi/gclust","rapi/genieclust-package","rapi/inequity","rapi/mst","weave/basics","weave/benchmarks_approx","weave/benchmarks_ar","weave/benchmarks_details","weave/noise","weave/r","weave/sklearn_toy_example","weave/sparse","weave/string","weave/timings","z_bibliography"],envversion:{"sphinx.domains.c":2,"sphinx.domains.changeset":1,"sphinx.domains.citation":1,"sphinx.domains.cpp":3,"sphinx.domains.index":1,"sphinx.domains.javascript":2,"sphinx.domains.math":2,"sphinx.domains.python":2,"sphinx.domains.rst":2,"sphinx.domains.std":1,"sphinx.ext.todo":2,"sphinxcontrib.bibtex":4,sphinx:56},filenames:["genieclust.rst","genieclust_compare_partitions.rst","genieclust_genie.rst","genieclust_inequity.rst","genieclust_internal.rst","genieclust_plots.rst","genieclust_tools.rst","index.rst","rapi.rst","rapi/comparing_partitions.rst","rapi/emst_mlpack.rst","rapi/gclust.rst","rapi/genieclust-package.rst","rapi/inequity.rst","rapi/mst.rst","weave/basics.rst","weave/benchmarks_approx.rst","weave/benchmarks_ar.rst","weave/benchmarks_details.rst","weave/noise.rst","weave/r.rst","weave/sklearn_toy_example.rst","weave/sparse.rst","weave/string.rst","weave/timings.rst","z_bibliography.rst"],objects:{"genieclust.Genie":{fit:[2,1,1,""]},"genieclust.compare_partitions":{adjusted_fm_score:[1,3,1,""],adjusted_mi_score:[1,3,1,""],adjusted_rand_score:[1,3,1,""],compare_partitions2:[1,3,1,""],compare_partitions:[1,3,1,""],confusion_matrix:[1,3,1,""],fm_score:[1,3,1,""],mi_score:[1,3,1,""],normalize_confusion_matrix:[1,3,1,""],normalized_accuracy:[1,3,1,""],normalized_confusion_matrix:[1,3,1,""],normalized_mi_score:[1,3,1,""],pair_sets_index:[1,3,1,""],rand_score:[1,3,1,""]},"genieclust.inequity":{bonferroni_index:[3,4,1,""],gini_index:[3,4,1,""]},"genieclust.internal":{DisjointSets:[4,0,1,""],GiniDisjointSets:[4,0,1,""]},"genieclust.internal.DisjointSets":{find:[4,1,1,""],get_k:[4,1,1,""],get_n:[4,1,1,""],to_list:[4,1,1,""],to_list_normalized:[4,1,1,""],to_lists:[4,1,1,""],union:[4,1,1,""]},"genieclust.internal.GiniDisjointSets":{find:[4,1,1,""],get_count:[4,1,1,""],get_counts:[4,1,1,""],get_gini:[4,1,1,""],get_k:[4,1,1,""],get_n:[4,1,1,""],get_smallest_count:[4,1,1,""],to_list:[4,1,1,""],to_list_normalized:[4,1,1,""],to_lists:[4,1,1,""],union:[4,1,1,""]},"genieclust.plots":{plot_scatter:[5,3,1,""],plot_segments:[5,3,1,""]},"genieclust.tools":{argkmin:[6,4,1,""],cummax:[6,4,1,""],cummin:[6,4,1,""]},genieclust:{Genie:[2,0,1,""],compare_partitions:[1,2,0,"-"],inequity:[3,2,0,"-"],internal:[4,2,0,"-"],plots:[5,2,0,"-"],tools:[6,2,0,"-"]}},objnames:{"0":["py","class","Python class"],"1":["py","method","Python method"],"2":["py","module","Python module"],"3":["py","function","Python function"],"4":["py","attribute","Python attribute"]},objtypes:{"0":"py:class","1":"py:method","2":"py:module","3":"py:function","4":"py:attribute"},terms:{"000":[17,24],"000000":20,"00017":[2,25],"001":21,"003":[2,4,13,25],"004013":20,"005":17,"007":6,"00726":[2,25],"0167":[2,25],"021185":20,"025":17,"031":24,"056494":20,"060":6,"061":6,"067901":20,"072":6,"073":6,"074134":20,"074894":20,"075":6,"081801":20,"084":24,"0_approx":16,"100":[5,6,17,24],"1000":24,"10000":[21,24],"100000":24,"1000000":24,"100000000":6,"10029":25,"1007":25,"100836":22,"100d":16,"1016":[2,4,13,25],"102542":20,"10475":22,"105":[17,24],"105000":24,"105539":20,"105600":24,"1058":22,"108":25,"1109":[1,25],"111":24,"1113":22,"1125":22,"113":24,"11346":24,"1145":[2,25],"1197":22,"1211":22,"122":25,"1232":22,"1234":21,"1250":22,"12m":24,"130701":20,"1313":[2,14,25],"132":24,"13239":22,"1325":[2,14,25],"13327":22,"13328":22,"1389":14,"1394":22,"1401":14,"140138":20,"144":22,"148":16,"1486":22,"1487":22,"1500":21,"154":20,"154272":20,"158":24,"159":25,"16021":24,"161":25,"1627":24,"164":25,"1657":24,"168":6,"1691":24,"16th":25,"170":21,"174":16,"1745":24,"1796":22,"1835804":25,"1835882":25,"1912":[3,13],"1914":22,"193":[1,9,25],"1930":[3,13,14],"1933":22,"1957":14,"1960":22,"1964":22,"1965":22,"1967":22,"1968":22,"197":15,"1973":[22,25],"1974":22,"1975":22,"1977":22,"1979":22,"1980":22,"1982":22,"1983":[22,25],"1984":22,"1985":[1,9,22,25],"1986":22,"1987":22,"1988":22,"1989":22,"1990":22,"1991":22,"1992":22,"1993":22,"1995":[2,14,22,25],"1996":[22,25],"1997":22,"1998":22,"1999":[22,25],"1_approx":16,"1st":20,"200":22,"2000":22,"2005":25,"2009":25,"2010":[1,2,9,10,25],"2011":[1,9,25],"2012":25,"2013":25,"2014":24,"2015":[2,11,14,25],"2016":[1,2,4,9,11,13,25],"2017":25,"2018":[2,10,22,25],"2019":[2,25],"202":24,"2020":[22,25],"2036":22,"203906":20,"205":25,"207":25,"2084":22,"2094":22,"2097":22,"21105":[2,25],"212197":20,"217":[24,25],"2173":[1,9,25],"2174":22,"2175":24,"218":[1,9,25],"2186":[1,9,25],"2190":22,"2216":22,"224":22,"225":24,"2259":22,"226":25,"231":25,"2382":22,"23rd":25,"242":24,"2443":22,"255":25,"2551240":[1,25],"2605":22,"264":[16,25],"266":24,"267":24,"268879":20,"2703":22,"27284":22,"2733381":[2,25],"274155":20,"27448":22,"276":15,"277173":20,"2772":22,"27753444":22,"2778":22,"2792":22,"2825":25,"2830":25,"2837":[1,9,25],"2854":[1,9,24,25],"2861":22,"2888":22,"2891":22,"2892":22,"289224":20,"2907":22,"2916":22,"292":16,"2963":22,"299":6,"299537":20,"2997":24,"2fs":21,"2nd":6,"300326":20,"3010":22,"3016":22,"307":16,"3097983":25,"3098079":25,"319":25,"3241080446115835":15,"326":16,"329":6,"332":16,"3341":22,"336496":20,"340152":20,"340636":20,"341":25,"350592":20,"357":24,"363":[2,4,11,13,25],"374348":20,"376":16,"3776":25,"377eb8":21,"3815066":25,"383":25,"388":6,"389867":20,"390":6,"3927":24,"3_approx":[16,24],"3_mlpack":24,"3_nomlpack":24,"403":6,"409":16,"4114":24,"412":24,"414":6,"415":16,"4170":24,"420523":20,"421":24,"434233":20,"436303":20,"4384":24,"4388":24,"4408":24,"445":24,"446943":20,"447":[6,16],"4486":24,"453451":20,"4581":22,"4716":22,"4743":25,"4757":24,"4759":25,"49055":25,"4945":24,"4daf4a":21,"500":22,"50000":24,"500000":24,"505":6,"508130":20,"512709":20,"516":16,"522":25,"5281":25,"531":16,"53889x283228":22,"539498":20,"541081":20,"543":25,"553":25,"555":16,"568":16,"569":25,"590927":20,"593052":20,"594718":20,"5_approx":16,"600":[17,24],"6006":22,"6027":22,"603":[2,10,25],"605769":20,"60ghz":24,"611":[2,10],"612":25,"621681":20,"624":16,"624147":20,"627805":20,"630009":20,"634251":20,"639":6,"662674":20,"663252":20,"6698":22,"673":6,"692808":20,"70000":24,"708":22,"715":24,"719":[16,24],"726":[2,10,25],"728":16,"731":16,"732":22,"734":16,"753476":20,"755":16,"759396":20,"7708":24,"778":24,"781637":25,"784":24,"794":24,"7_19":25,"7_approx":16,"817850":20,"819":22,"8191":[2,25],"820":22,"827154":20,"829620":20,"831955":20,"836":22,"839":22,"844":16,"850":22,"854317":20,"863":22,"868176":20,"886885":20,"895167":20,"898":22,"898812":20,"899":22,"911":22,"921":22,"931156":20,"934":22,"9352814722212013":23,"955":22,"959609":20,"964":22,"964981247":22,"964982224":22,"964982703":22,"964982931":22,"964983815":22,"969":22,"9724x610":22,"972848":20,"9750h":24,"977":22,"978":25,"984ea3":21,"987":22,"992649":20,"999999":21,"\u03c3":13,"bor\u016fvka":10,"break":[7,24],"c_\u03c3":9,"case":[2,4,5,11,14,16,18,24],"catch":21,"char":20,"class":[0,2,4,10,11,14,15,22],"default":[2,11,14,15,17,19,20,24],"final":20,"float":[2,6,11,14],"fr\u00e4nti":25,"function":[1,4,5,6,7,9,15],"import":[5,7,15,19,21,22,23,24],"int":[2,5,6,21,22],"jarn\u00edk":[2,14,24],"jist\u00e9m":14,"m\u00fcller":25,"m\u00fcllner":25,"minim\u00e1ln\u00edm":14,"moravsk\u00e9":14,"new":[2,4,7,11,13,19,20,22,25],"null":9,"p\u0159\u00edrodov\u011bdeck\u00e9":14,"pr\u00e1ce":14,"probl\u00e9mu":14,"return":[1,2,3,4,6,11,19,22],"spole\u010dnosti":14,"switch":19,"true":[2,11,14,15,19,23,24],"try":[2,11,17],And:22,Being:22,Eqs:[1,9],Eyes:22,For:[2,3,4,10,13,15,16,17,19,20,24],IDs:[4,22],Ice:7,Its:[2,7,11,15],One:[2,3],Sys:14,The:[1,2,3,4,5,6,7,8,13,14,15,16,17,19,20,21,22,23,24,25],Then:[7,18,21,22],There:21,These:[3,9,13],Use:11,a65628:21,aardman:22,abil:14,abl:[2,7,11,15],about:24,abov:[2,11,15,18,22],abridg:22,abundez:[1,9],accept:[1,2,14],access:10,accord:[2,11],accuraci:[1,9,18],achin:25,acm:[2,10,11,14,25],across:16,act:[2,7,11],actg1:23,actual:[1,2],adapt:7,added:[16,18,24],adding:2,addition:2,adjac:[2,11],adjust:[1,9,15,16,17,18,20,23],adjusted_fm_scor:[1,9],adjusted_mi_scor:[1,9],adjusted_rand_scor:[1,9,11,15,23],affect:[2,15,17],affin:[2,17,22,23],afm:1,after:[2,7],again:[16,19],against:[15,17,24],agglom:[15,17,24,25],agglomerativeclust:21,aggreg:[17,18,20],agpl:7,agreement:[1,9,17,18],aim:1,airplan:22,albania:20,albeit:[2,24],alert:16,algeria:20,algo_param:21,algorithm:[1,2,3,4,7,8,10,13,14,15,16,17,18,19,22,24,25],all:[2,3,4,5,11,13,14,16,17,24],alloc:20,allow:[4,7,17,19,23,24],almost:[6,22,24],alongsid:17,alpha:19,alreadi:3,also:[1,7,9,15,17,19,20,21,22,23,24],altern:[2,11,14,24],although:16,altogeth:16,alwai:[1,4,5,9],american:25,ami:1,ami_:9,amongst:[2,3,11,13,15,24],amuel:25,analysi:[2,10,14,25],analyz:22,angola:20,angulardist:2,angulardist_spars:2,ani:[2,5,7,19,24],animatio:22,aniso:21,anisotrop:21,anoth:[7,15],anywai:2,api:[7,15,18,25],appeal:[2,7,11],appendix:[7,17],appli:[1,2,11,15,17,19,24,25],applic:[2,3,10,13,18,25],approach:[2,7,11,25],approxim:[2,7,22,24],arabi:[1,9,25],arbitrari:[2,11],archiv:25,argentina:20,argkmin:6,argmin:6,argsort:6,argu:2,argument:[2,5],ariant:25,arithmet:[11,14],arizmendi:[1,9],armenia:20,around:1,arrai:[1,2,4,6,15,21],array_lik:[1,5],art:[22,25],ascend:6,ascii:2,ask:19,asp:11,assign:[1,3,5,9,13,15,23],associ:25,assum:2,assumpt:4,assur:2,ast:25,astel:25,astyp:21,atgtctccaaagcgtgaccttctagacccgagacgacatatggaggcttggagccgtacctgtgtgaggaaactgtagtacccaaagctattca:23,atom:18,attribut:[2,14],augment:4,australia:20,austria:20,auto:[2,24],automat:24,avail:[2,7,17,20,24],averag:[7,17,18,20,21],avoid:21,awai:[2,3,11,13,14],axi:[2,5,15,19],back:[15,22],bailei:[1,9,25],ball:22,bartoszuk:[2,4,11,13,25],base:[1,2,9,10,11,17,18,20,22,23,24,25],basic:[7,20],basicne:20,basket:22,batteri:[16,17],becom:[2,24],been:[18,24],behav:16,behind:7,being:[2,4,11,14],belgium:20,bell:14,belong:15,below:[1,2,9,17,20,21],benchmark:[1,2,7,11,15,20,23,24,25],best:[2,11,17,18,22],better:[16,17,20],between:[1,2,6,9,11,14,15,16,17,18,19,22,23],beyond:15,bf01908075:25,biject:[1,9],birch1:18,birch2:[16,18],birch:[7,17],birch_0:[17,18],bit:[2,11,14,16,18,24],bit_ham:2,bit_jaccard:2,black:5,blackadd:22,blob:[2,21,24,25],blue:[5,22],boi:22,bolivia:20,bologna:[3,13],bonferroni:[3,13],bonferroni_index:[3,13],book:20,bool:[2,3],both:[1,2,3,9,13],bottl:22,bottom:21,bound:[1,9],boundari:[2,11,14],bowfing:22,bowl:22,box:21,boxplot:17,boytsov:[2,25],branching_factor:17,brian:22,bride:22,brother:22,buitinck:25,c_contigu:1,cach:24,call:[1,2,4,5,11,20,22,24],campello:[2,11,14,25],can:[1,2,3,5,7,9,11,13,14,15,19,20,23,24],canada:20,cannot:15,cardin:[2,4,24],care:2,carol:22,cast:2,cast_float32:[2,11,14,20,23],catch_warn:21,categor:20,categori:[20,21],catmethod:20,ceil:5,cel:[24,25],cell:22,cena:[2,4,11,13,25],center:5,centr:[2,16,18,24],centroid:[17,18,24],chainlink:18,chameleon:25,chameleon_t4_8k:18,chameleon_t5_8k:18,chameleon_t7_10k:18,chameleon_t8_8k:18,chanc:[1,9,25],chang:[1,2,17,24],charact:23,characterist:21,check:20,children_:[2,15],chile:20,choic:24,choos:[2,11],chose:16,chosen:[2,11,14],christma:22,circl:18,cityblock:[2,11,14],classic:[2,11],classif:[1,9,25],classifi:19,clearli:24,climateandenergi:20,close:22,closer:19,closest:[7,15],cluster:[1,2,3,4,8,9,13,14,15,16,17,18,20,21,22,23,24,25],cluster_std:21,clustering_algorithm:21,clustering_benchmarks_v1:[1,11,25],clusteringtheori:25,cmzs15:[7,15,19,25],coarser:[2,19],coarsest:2,code:7,coercibl:[2,9,10,11,14],coffe:[7,24],col:[5,11],collect:5,colombia:20,color:[5,20,21],colourpalett:20,column:[1,2,5,9,10,11,14,18,20],column_stack:15,com:[1,2,11,15,20,23,25],come:[1,15,23],comfort:22,comment:20,commun:[1,9],compar:[1,7,9,15,24,25],compare_partit:[0,7,15,18,23],compare_partitions2:1,comparing_partit:[7,8],comparis:7,comparison:[1,7,9,25],compat:[7,11,15,20,24],complet:[7,14,16,17,18,21,24],completel:22,complex:[2,3,13,14,24],compon:[2,21],compound:18,compress:[4,22],comput:[1,2,3,4,9,11,14,15,16,20,24,25],compute_all_cut:2,compute_full_tre:[2,15],conduct:2,confer:25,confus:[1,9,15],confusion_matrix:1,connect:[2,14,21],consecut:[22,24],consid:[16,17,20,22,24],constant:[3,13],constitut:2,construct:2,consum:[2,11],contain:4,conting:1,contrari:[2,19],contrib:25,contribut:7,control:[2,11,14,19],convers:22,convert:23,convex:[3,5,13,15],convexhul:5,coordin:[2,5,24],copi:21,core:[2,7,11,24],correct:[1,2,9,11,25],correspond:[1,2,5,11,14,15,16,19],cosin:[2,11,14,22],cosinesimil:2,cosinesimil_spars:[2,22],cost:[2,4],cote:20,count:[15,16,17,18],countri:20,counts_:[2,15],cours:[15,19,24],cpu:24,cran:[7,20],creat:[2,21],createindex:2,creatur:22,cross:18,crucial:24,cry:22,csr:22,csr_matrix:2,csv:[20,22],cummax:6,cummin:[2,6,11],cumprod:6,cumsum:6,cumul:6,cuppini:[3,13],current:4,curs:[22,24],curtin:[2,10,25],cut:2,cutre:[7,11,20],cycl:21,czech:20,d31:18,d_m:19,dai:22,dalton:[3,13],danifold:25,dasgupta:25,data:[1,2,3,6,7,9,10,11,13,14,15,19,20,21,24,25],data_typ:2,databas:[22,25],dataset:[1,2,7,9,11,14,15,16,19,20,22,23,25],datatyp:2,dbscan:[2,7,11,15],ddof:2,decim:[2,17],decreas:[2,3,13],dede00:21,default_bas:21,defin:[1,5,9,14,17],definit:[1,9,11,15,22],degrad:24,degre:23,demand:15,demonstr:[16,24],dendrogram:[2,7,11,20],denmark:20,denot:[2,4,11,15,17,18,19],dens:[1,2,18,22],densiti:[2,11,14,25],departur:11,depend:[2,7,11,24],depict:20,descend:6,describ:2,descript:[2,16,17],design:[4,25],desir:[11,17,20],detail:[1,2,7,10,12,15,17,20],detect:[2,11,14,20,24,25],detect_nois:11,detector:[2,7,11],determin:[1,2,7,14,22,24],devel:[15,20,23],dg19:[17,25],diagnost:[2,10,11,14],diagon:1,diagram:15,dict:[1,2,23],dictionari:[1,2],did:19,differ:[11,16,17,19,21,24],difficult:7,digit:[2,16,17,18,24],dijkstra:[2,14,24],dilemma:25,dimension:[2,10,11,14,16,24],dimnam:20,directli:20,disabl:[2,11,19],disconnect:2,discov:[15,25],discoveri:[2,11,14,25],discrep:16,discuss:[17,24],disjoint:[1,4,5,9],disjointset:4,dispers:[3,13],dissimilar:2,dist:[11,14,20],distanc:[2,7,8,11,16,18,19,20,23,24],distances_:[2,15],distinct:5,distinguish:2,distribut:[2,4,7,11,17,21],dn09:[17,25],dna:7,document:[7,15,18,20],doe:[2,11,16,24],doesn:7,doi:[1,2,4,13,25],dok_matrix:22,domain:23,don:[20,22],done:24,dot:[3,4,21],doubl:[1,3,6],down:2,download:7,draw:5,drawn:5,dtype:[2,15,19,22,23],dua:25,dual:10,duck:22,due:[1,9],dure:[2,4,24],dynam:25,e41a1c:21,each:[1,2,4,5,7,11,14,16,17,18,19,20,24],eagerli:19,earli:21,easier:21,easili:[7,15,19,24],ecml:25,ecoli:18,econom:[3,13,15,20],economi:20,edel:[2,10,25],edg:[2,11,14],edit:23,edu:25,effect:[2,11,19,24],effici:[20,24],either:[2,5,14],eksx96:[15,25],elaps:24,elect:22,element:[1,2,3,4,6,9,11,13,22],elementi:[3,13],els:21,empir:[17,22],emst:[2,10,24],emst_mlpack:[7,8,11,14],enabl:2,engin:25,engytim:18,enough:15,enumer:21,environ:[2,7,11,14],environment:20,episod:22,epp:[1,9,25],eps:[2,7,11,15],equal:[3,5,6,13,15,17,19],equip:15,equiti:[3,13],equival:[2,5],esp:9,especi:1,ester:25,estim:[2,11,14,25],estonia:20,etc:20,ethiopia:20,euclidean:[2,5,7,8,11,14,16,18,19,20,24,25],evalu:17,even:[2,3,7,19,24],everi:[1,9,18],everyth:20,evidenc:24,exact:[2,16,22,23,24],exactli:2,exampl:[1,3,5,6,7,15,19,21],excel:19,except:[1,4,9,16,20,24],exercis:22,exhal:22,expect:[1,5,9,17],experiment:25,expert:[15,19,23],explicitli:[11,17,19],extern:[1,7,9,11,20,23,25],extra:[7,8,22],extract:[20,22,24],extrem:[7,24,25],f781bf:21,factor:[2,7,11,14,21],fail:[2,17],fals:[2,3,10,11,14,15,16,22,23,24],familiar:7,famou:22,far:15,fashion:[18,24],fast:[2,4,5,6,10,11,13,14,16,19,25],fastclust:[17,24,25],fastcluster_centroid:24,fastcluster_median:24,fastcluster_ward:24,faster:[2,7,11,14,16,20,23,24],fastest:[21,24],father:22,fcp:18,fear:22,featur:[2,10,11,14,15,16,18,19,20,22,24],feed:20,feel:[7,19],few:[1,2,15,17,20,22],ff7f00:21,fidel:22,figsiz:21,figur:21,file:[14,22],film:22,filterwarn:21,find:[4,6,7,19],fine:2,finer:19,finland:20,fire:16,firenz:[3,13],first:[4,5,7,11,15,19,21,22,24],fish:22,fit:[2,7,15,17,21,22,24],fit_predict:[7,15,19,22,23],fit_transform:21,fix:5,flame:18,flexibl:[2,10,25],float32:[2,22],fly:14,flynt:22,fm83:[18,25],fm_score:[1,9],fmiz16:[17,25],follow:[1,3,13,15],forc:[2,11],forest:[2,24],forget:20,form:[2,7,22],formal:2,format:[2,7,11,22],former:17,forth:22,forthcom:20,fortun:15,found:[2,19],fowlk:[1,9,18,25],frac:[3,4,13],frame:[10,11,14,20,22],franc:20,frankenstein:22,franti:[1,9],friendli:15,from:[1,2,3,5,7,9,10,11,13,14,15,16,17,18,19,20,21,22,24,25],fs18:[17,25],full:22,further:[5,7,11,14,24],furthermor:2,futur:22,fuzzi:25,fuzzyx:18,g2mg:[16,17],gacaattatcgcggctttcgccatgcagagtctcgtacaatttgtttcacgcccaatattttccgtgcttcgcgagctaggcagccagggcatttttgga:23,gagolew:[1,11,15,20,23,25],gagolewski:[2,4,7,11,12,13,25],gain:14,game:[21,22],gamma:17,gaussian:[2,16,17,18,24],gbc16:[7,15,17,19,23,25],gca:21,gcaattgaagtccagatctaggtatcgtccaagcatattgcctttaagaaatatatttgaccctgtctcttcgtggaggtacacgtcacggaatcgtaagatttccttgg:23,gclust:[7,8,14,20],gener:[1,2,4,6,11,15,16,17,21,24],general:[3,13],generalis:14,geni:[0,3,4,7,8,13,14,15,16,17,19,20,21,22,23,24,25],genie_0:[16,17,18,24],genie_1:16,genieclust:[15,16,17,18,19,20,21,22,23,24],geq:3,german:25,germani:20,get:[4,15,17,19,22],get_count:4,get_gini:4,get_k:4,get_n:4,get_smallest_count:4,ghaisa:[2,10,25],ghana:20,gini:[2,3,4,11,13,15],gini_index:[3,11,13],gini_threshold:[2,11,15,16,17,19,20,24],ginidisjointset:4,github:[1,2,7,11,15,20,23,25],give:[1,2,3,5,9,11,13,14,15,17,20,23,24],given:[1,2,3,4,9,11,13,14,15,22,24],glanc:15,glass:18,glust:20,gnu:[7,24],goal:19,goe:[2,7,11],good:[2,7,16,19,24],gp10:[17,25],graff:25,grai:[2,10,15,25],grail:22,grain:2,grand:22,granular:[15,19],graph:[2,7,8,11,18,24,25],graphic:[5,15],grave:[18,25],greater:[2,20,24],greec:20,green:5,grei:19,grid:17,gromit:22,ground:[1,9,17],groundhog:22,group:[2,7,11,15,18,20],grumpier:22,guarante:2,guess:15,guffman:22,gun:22,h2mg:[16,17],h_oecd:20,ha85:[17,18,25],han:25,hand:[2,7,11,15,24],handi:1,handl:22,happen:15,hard:[15,22],has:[2,3,7,13,18,20,24],hasattr:21,have:[3,4,13,16,17,18,19,24],hclust:[7,11,20],hdbscan:[2,7,11,18,25],head:[20,22],header:7,heali:25,heat:18,height:11,help:22,henc:[1,2,7,9,11,17,24],hepta:18,here:[5,15,16,17,19,22,24],hierarch:[2,4,8,13,14,15,17,19,20,21,24,25],hierarchi:[2,7,11,15,22,24],high:[16,22,23,24],higher:[10,24],highest:17,highli:[2,7,11,24],hire:5,hnsw:2,hold:[2,3,6,11,13,14],holi:22,hollywood:22,hood:19,hope:22,horizontalalign:[5,21],how:[7,15,19,20,22],howev:[2,7,11,17,19,24],hspace:21,html:25,http:[1,2,4,10,11,15,20,23,25],hubert:[1,9,25],hull:5,human:20,hungari:20,hunt:22,i_dataset:21,iceland:20,ics:25,idea:[2,7,19],ident:[1,9,24],identif:19,identifi:[2,11,14,19,20],ieee:[1,9,25],ierarch:25,ignor:[2,21],iii:22,illustr:[21,22],iloc:22,imbalanc:[2,7,11],implement:[1,2,4,7,10,13,14,15,17,18,19,22,23,24],importantli:24,includ:[2,17],increas:[2,11,15,24],increasingli:[2,3,6,13],independ:[1,2,9],index:[1,2,3,4,6,7,9,11,13,15,16,17,18,20,23],indexthreadqti:2,indic:[1,3,5,13,14,15,16,18,20,23],individu:7,inequ:[0,2,7,8,15],inform:[1,2,4,9,11,13,14,17,18,25],init:2,input:[1,2,7,9,11,13,14,15,20,22,24],ins:[2,4,13,25],insert:6,inspect:17,inspir:5,instal:[2,20],instanc:[2,24],instead:[2,11,14,15],integ:[1,2,4,5,6,9,11,22],intel:24,intellig:25,interact:[15,20],interest:20,interestingli:[16,17],interfac:[7,15],intern:[0,1,5,7,9],intp:[15,19,23],invari:2,ionospher:18,ireland:20,iri:[9,11,14,18],iris5:18,irrespect:24,is_sort:3,ish:15,isin:22,islic:21,isol:18,israel:20,issu:7,istodor:25,itali:20,item:[1,18],iter:2,itertool:21,itm:[17,18,25],its:[1,2,4,5,7,9,11,15,24],itself:[2,4,24],ivoir:20,jaccard_spars:2,jain:[15,18,25],japan:20,jedi:22,jl05:[15,25],jmlr:25,john:22,join:15,joincod:20,joincountrydata2map:20,joss:[2,25],journal:[1,2,9,10,25],jumanji:22,just:[2,11,24],karypi:25,kdd:25,keep:[7,19],kei:1,kernel:[24,25],khk99:[17,25],king:22,kingdom:20,kmean:[9,15,24],kmkm17:[24,25],kneighbors_graph:21,knowledg:[1,2,9,11,14,25],known:[15,17,19],kobren:25,korea:20,kriegel:25,krishnamurthi:25,kruskal:[2,24],kumar:25,kwarg:5,l1_spars:2,l2_spars:2,label:[1,2,5,7,9,14,15,17,19,23],labels0:[15,19,23],labels_:[2,21],labels_geni:[15,19],labels_hdbscan:[15,19],labels_kmean:15,labels_nois:19,labels_pr:23,labels_tru:[15,19,23],labirynth:18,lampert:25,languag:[7,25],lao:20,laplacian:17,laptop:16,larg:[7,16,25],larger:[2,17,21,24],largest:1,larri:22,las:11,lastp:15,latest:20,latex:[2,25],latter:[2,5,17],latvia:20,law:25,lead:17,leaf:2,learn:[1,2,7,9,10,15,17,21,24,25],least:[2,16,17,19,24],leav:[2,11],lebanon:20,lectur:25,left:[2,3,15,21],len:[5,15,19,21,23],length:[1,2,4,5,6,9],leq:1,less:[2,16,24],lesser:17,let:[1,4,9,15,16,19,20,22,23,24],level:[2,11,24],leven:[2,23],levenshtein:23,lgorithm:25,librari:[2,7,10,11,14,15,20,25],libreria:[3,13],libya:20,licens:7,lie:15,life:22,light:19,like:[2,6,7,10,11,14,15,24],limit:[17,24],lin73:[15,25],line:[5,18],linear:[1,9],linf:2,linf_spars:2,ling:25,link:[7,11,15],linkag:[2,7,11,14,16,17,18,21,24],linkage_matrix:15,linux:24,list:[4,11,15,16,20,21,23,24],lithuania:20,littl:20,live:22,load:[15,19,22],loadtxt:[15,19,23,24],loaf:22,loc:22,locat:[2,6],logic:[10,11,14],lola:22,look:[7,19],low:[2,10,11,14,24],lower:17,lozhnikov:[2,10,25],lstrip:21,lsun:18,luxembourg:20,machin:[1,2,9,10,25],magic:[2,11,15],magnolia:22,mai:[1,2],main:1,make:[2,7,11,14,15],make_blob:21,make_circl:21,make_moon:21,malkov:[2,25],malkovich:22,mallow:[1,9,18,25],manhattan:[2,11,14],mani:[2,15,19],manual:[2,15,20,25],map:[18,22,25],mapcountrydata:20,mapdata:20,maptitl:20,march:[2,10,25],marek:[7,12,20],mariescu:25,mark:[2,11],marker:[5,19],markers:5,master:[2,15,20,23,25],match:[1,7,9,15,25],mathrm:1,matplotlib:[5,15,19,21],matrix:[1,2,5,9,10,11,14,15,20,21,22,23],matter:[1,5,22],mauritania:20,mauritiu:20,max:[1,2,5,6,11,14,16,17,18,21,22],maxim:[1,9,17],maximis:17,maximum:6,mccallum:25,mcinn:25,mcs:15,mcss:19,mean:[1,2,7,16,17,18,19,20,22,24,25],meaning:[7,16,21],measur:[1,3,7,8,9,11,15,18,20,25],median:[16,17,18,24],member:[4,7,20,22],membership:4,memori:[2,6,7,14,24],men:22,menac:22,mentekidi:[2,10,25],mention:[19,23],merg:[2,4,7,11,15],messag:[2,10,11,14,21],meta:22,method:[2,7,11,14,15,17,20,21,24,25],metric:[2,10,11,14,15,23,24,25],mexico:20,mha17:[19,25],mi_scor:[1,9],might:[1,2,6,7,9,11,14,15,17,19,24],million:[7,15,16],min:[1,6,16,17,18],min_cluster_s:[2,11,15,19],min_sampl:19,mind:[15,24],mine:[1,9,25],minimum:[2,5,6,7,8,11,17,19,24,25],minut:16,miss:11,missingcountrycol:20,mixtur:[17,18],mk1:18,mk2:18,mk3:18,mk4:18,mlpack:[2,10,24,25],mlpack_en:[2,24],mlpack_leaf_s:2,mnist:[18,24],model:25,modul:[0,7,25],monath:25,monti:22,more:[1,2,3,6,7,12,15,17,18,19,20,24],moreov:[1,2,14,17,19,24],most:[11,15,21,24],moulavi:[2,11,14,25],movi:7,movieid:22,movielen:22,mrg10:[24,25],mrk:5,mrk_recycl:5,msnowozinl12:[17,25],mss:19,mst:[2,5,7,8,10,11,20,24,25],mst_from_dist:5,much:[2,15,16,17,24],mul13:[17,24,25],multipl:[1,14,17,25],must:[2,4,5],mutabilita:[3,13],mutual:[1,2,7,9,11,14,18,19],n_cluster:[2,7,15,17,19,21,22,23,24],n_clusters_:2,n_featur:2,n_features_:2,n_init:[17,24],n_neighbor:21,n_sampl:[2,21],n_samples_:2,nacc:1,naidan:[2,25],naiv:4,nake:22,name:[2,14,20,21,22],namecolumntoplot:20,namejoincolumn:20,namibia:20,nan:18,natur:19,naturalresourc:20,nbmn19:[7,24,25],ncl:15,ncol:5,ncs:19,ndarrai:[1,2,3,4,6],ndmin:[15,19,24],nearest:[2,7,11,14,15,16],neat:19,necessarili:[6,16],need:[2,4,24],neg:[1,3,9,13],negdotprod:2,negdotprod_spars:2,neighbour:[2,7,11,14,15,16,22,23,24],neither:4,nest:15,net:25,netherland:20,network:14,nicaragua:20,nice:[15,21,24],night:22,nip:25,nmi:1,nmi_:9,nmrk:5,nmslib:[2,7,16,22,23,24,25],nmslib_n_neighbor:2,nmslib_params_index:[2,23],nmslib_params_init:2,nmslib_params_queri:2,no_label:15,no_structur:21,nois:[2,11,14,15,16,18,20,21,24,25],noisy_circl:21,noisy_moon:21,non:[2,3,13,19,22,25],non_nois:19,nondecreasingli:[4,14],none:[2,5,11,21],nonempti:[1,9],nor:4,normal:[1,9,21,25],normalis:[1,3,4,13,18],normalize_confusion_matrix:1,normalized_accuraci:[1,9],normalized_confusion_matrix:[1,15],normalized_mi_scor:[1,9],normleven:2,north:20,norwai:20,note:[1,2,3,4,5,6,7,9,11,14,15,16,20,21,24,25],noteworthi:16,notion:[2,11,15],novak:[2,25],now:[2,11,19,22,24],nowozin:25,number:[2,3,4,7,11,13,14,15,17,19,20,21],numer:[2,3,10,11,13,14],numpi:[2,6,15,19,21,22,23,24],object:[2,9,10,11,14,15,20,21,22],observ:[1,2,9,14,16,17,22,24],obtain:[2,11,15,19,20,23],occur:11,octob:22,oecd:20,off:5,often:[2,7,11,15],old:[19,22],old_movieid_map:22,oliv:22,ols95:[24,25],olson:[2,14,25],olymp:18,omit:17,omp_num_thread:[2,11,14],onc:[2,5,11,19,24],one:[2,3,5,7,10,11,13,14,15,16,18,19,22,23,24],ones:[2,16,19],onli:[2,5,7,11,15,16,17,20,21,22,24],onto:1,open:[2,7,10,25],oper:4,option:2,order:[2,3,4,6,11,13,20,24],org:[4,10,25],organ:25,orient:15,origin:[1,2,7,11,14,15,16,19,21,24],other:[2,3,4,7,10,11,13,14,15,17,18,22,24,25],otherwis:[2,4,11,13,14],our:[2,16,19,22,24],ourselv:[17,20],out:[2,15,20,21,22,24],outcom:[16,17],outlier:[2,4,7,11,13,14,25],outperform:[2,7,11,15,17],output:[1,2,9,15,16,17,21],over:[4,10,17],overal:[17,24],own:7,packag:[2,4,5,7,15,17,18,19,20,22,23,24],page:[7,25],pair:[1,5,7,9,18,20],pair_sets_index:[1,9,11],pairwis:[1,2,7,8,11,24],palett:20,panama:20,panda:[15,19,22],paolo:[3,13],paper:[10,25],parabol:18,parallel:[2,14,25],parallelis:[2,10,11,14,24],param:21,paramet:[1,2,3,4,5,6,7,11,15,16,17,19,21,24],parameteris:19,parametr:17,parent:4,part:[2,17,22,24],partial:20,particular:[5,13,15,16],partit:[1,2,4,7,8,11,15,17,18,19,20,21,24,25],pass:[2,11,14],path:4,pathbas:18,patriot:22,pattern:25,pch:11,pdf:[2,5,10,25],pdist:2,pedregosa:25,pedrycz:25,penalis:[2,11],peopl:22,perceiv:[3,13],perfect:[3,13,15,17,18],perfectli:7,perform:[2,11,16,18,22,23,24],perhap:17,permut:[1,3,9,13],person:6,personaldevelopmentandhealth:20,pessimist:4,phantom:22,physic:24,pictur:15,pigou:[3,13],pivot:[1,15],pkdd:25,plai:19,plausibl:17,plot:[0,2,7,11,15,19,20,21],plot_num:21,plot_scatt:[5,15,19],plot_seg:5,plt:[5,15,19,21],png:5,point:[2,5,11,14,15,16,17,20,24],poland:20,poli:17,polic:22,policeman:22,pool:24,poor:[3,13],popul:17,popular:15,portug:20,posit:6,possibl:[1,9,15,20],post:[2,23],postprocess:[2,11],power:7,practic:[6,15],precis:[2,11,14,16],precomput:2,predecessor:2,predefin:[2,7,11],predict:[15,16,17,19,21],prefer:[1,6,9],preprocess:[2,18,21],presenc:9,present:18,pretti:5,prevent:[2,7,11],preview:[20,23],previou:[16,24],prim:[2,10,14,24],princess:22,principl:[3,13,25],print:[2,10,11,14,20,22,23,24],probabl:[1,9,25],problem:[1,9,24],proc:[2,10,25],procedur:[2,19,21],process:2,produc:22,product:6,progress:[2,11,14],project:[19,22,25],properti:[1,2,5,9,11,25],provid:[2,10,11,17,19,24],psi:[1,9],publish:[2,7],pull:[2,11,14],puriti:[1,9,18],pypi:7,pyplot:[5,15,19,21],python:[7,15,20,22,24,25],python_bind:25,quadrophenia:22,qualiti:[15,17,24],quantifi:[1,2,3,9,13,16,17],question:24,quickli:24,quiroz:[1,9],quit:17,r15:18,rabb:22,rais:[2,11],ram:[2,10,22,25],rand:[1,9,15,16,17,18,20,21,23],rand_scor:[1,9],randn:5,random:[5,6,21],random_st:21,randomli:6,rang:[5,15,16,19],rank:[4,17,18],rate:22,rather:2,raw:[2,11,14,18],rbf:17,reachabl:[2,7,11,14,19],read:[7,18,20,22],read_csv:22,readabl:20,real:[2,9],realli:4,reason:[17,20],recal:[16,24],recognit:25,recommend:[7,15,16,17,24],recomput:[4,24],record:2,recurs:4,red:[5,22],refer:[1,2,3,7,15,16,17,18,19,20,23,24],regard:20,region:15,reimplement:11,rel:7,relat:21,releas:20,reli:[2,4,15,16,19,22,23],reloc:1,remap:1,remov:[16,18,19,24],rendon:[1,9],rennt:22,repeat:5,replac:19,report:17,repositori:[20,25],repr:22,repres:[1,4,9,14],republ:20,request:[2,14,24],requir:2,research:[1,9,25],resist:[2,4,7,11,13,25],resourc:24,respect:[1,2,5,7,9,11,14,16,18,19,22,24],restart:24,restrict:[17,20],result:[1,2,4,7,9,11,15,16,17,19,21,24],rev:11,reveal:19,review:22,rezaei:[1,9,25],rf16:[18,25],rich:[3,13,17],right:[3,21],ring:18,ring_noisi:18,ring_outli:18,rmd:23,robinhood:3,robust:[2,11],robustifi:[2,7,11,15],rocket:22,romania:20,round:[1,3,17],routin:[11,22,23,25],row:[1,2,9,14,18,20,22],run:[2,4,6,11,16,21,22,24],rushmor:22,russia:20,rworldmap:20,safe:24,sai:[2,10,20],sake:15,same:[1,4,5,9,15,17,22,24],sampl:[3,13,17,20,21],sander:[2,11,14,25],scale:[2,16,17,18,20,24],scatter:[5,15,19,21],scheme:6,schur:[3,13],scienc:[2,4,11,13,25],scikit:[7,15,17,21,24,25],scipi:[2,5,15,22],score:[1,3,7,8,11,13,15,17,18,20],script:21,search:[7,16,22,23,24],searchsort:22,seber:[3,13],sec:22,second:[4,24],secret:22,section:[15,16,17,18,24],see:[1,2,4,5,7,9,10,12,15,16,17,18,20,23,24],seed:21,seem:15,seen:16,segment:5,select:[11,14,21],self:[2,25],sens:17,separ:14,sequenc:15,seri:[1,24],set:[1,2,3,4,5,7,9,11,13,14,15,17,18,19,20,21,23,24,25],set_data_structur:4,set_param:24,setenv:14,setquerytimeparam:2,shape:[1,2,4,5,15,19],shave:22,shortest:14,should:[2,11,15,17],shouldn:15,show:[5,15,19,21,22],show_leaf_count:15,shut:22,side:15,sieranoja:25,sight:22,sigkdd:[2,10,25],sigma:[1,3],sigmoid:17,signific:17,sim:15,similar:[1,7,8,11,15,16,17,18,20,22,23],similarli:[1,9],simpl:[7,22],simplic:[2,5,7,11],singl:[2,9,11,16,17,18,21,24,25],sipu:[16,18,24],site:19,six:25,size:[2,3,4,7,11,13,14,15,21,24],sklearn:[15,21,24],sklearn_kmean:24,slightli:24,slovak:20,slovenia:20,slow:[4,14,24],slower:24,small:[1,2,6,7,11,16,22,24],smaller:[4,17,20],smallest:[2,4,6,7,11,15],smell:22,smile:18,smooth:[2,7,11,14],smp:24,societi:20,softwar:[2,10,25],solut:[1,2,9,17],solv:[7,24],som:25,some:[1,2,4,7,9,14,17,18,24],somehow:[2,7,11],someth:22,sometim:[1,2,7,9,17],somewhat:15,somewher:15,sonar:18,sort:[2,3,6,13,14,24],sort_valu:22,soup:22,sourc:[2,7,10,17,25],south:20,space:[2,10,11,14,15,16,24,25],spain:20,span:[2,5,7,8,11,17,19,24,25],spars:[2,7],spatial:[2,5,25],specif:[20,21],spectral:17,spectral_rbf_5:[17,18],speed:15,sphinx:[15,20,23],spinal:22,spiral:18,splendid:7,split:15,spoiler:16,sqrt:[2,4,24],squad:22,squar:[2,18],squareform:2,ssfindex:20,ssi:20,ssi_2016_categori:20,ssize_t:4,stabl:[2,15,17,20,25],stage:[2,18],standardis:[2,11],standardscal:21,star:22,stat:20,state:20,statist:[6,16,17,18,25],statistica:[3,13],statlog:18,std:[2,16,17,18],stderr:2,step:19,still:[19,24],sting:22,stop:21,store:[2,22,24],stori:22,str:[2,23],strang:15,strike:22,string:[2,7],stripe:18,structur:[2,24],studi:[17,24,25],style:5,subgroup:15,subject:17,submarin:22,suboptim:14,subplot:[15,19,21],subplots_adjust:21,subset:[1,4,9],subtract:15,suggest:[2,17],suit:[1,7,16,17,18,24,25],suitabl:[2,24],sum:[1,6,9],sum_:[3,4],summari:7,summaris:[1,15,18],support:[2,7,22],surpris:15,sustain:20,sweden:20,switzerland:20,symbol:15,synonym:[2,11,14],synthet:24,syst:14,system:[24,25],tabl:[1,9,22],take:[2,3,11,13,16,22,24],taken:2,tap:22,target:18,task:[2,7,14,24],tataacaaccctgattacatcaagctacgctccggtgcgttgcctcggacgagtgctaatccctccccactgactgtattcatcttgacaata:23,tech:14,temporarili:19,tend:[2,17,19],term:15,terrestri:22,test:[11,17],tetra:18,text:[5,21],thailand:20,than:[2,4,16,20,24],thank:[7,24],thei:[2,3,9,13,16,17,22,24],them:[15,19],themself:2,theoret:[1,9,17,25],theori:25,therefor:[2,5,7,11,24],therein:1,thi:[1,2,4,5,11,14,15,16,17,18,19,20,21,22,23,24],thou:22,thousand:15,thread:[2,7,11,14],three:22,threshold:[2,11,15,17],thrown:4,tile:5,time:[2,3,4,6,7,11,13,14,17,20,21],timestamp:22,tini:[2,16,18,24],tipografia:[3,13],titl:[5,15,19,21,22],tkde:[1,25],to_list:4,to_list_norm:4,tocsr:22,todens:22,togeth:[2,11,15],toi:[7,22],tolist:23,tommi:22,too:[2,14,15],tool:[0,2,7],top:[2,21,22,24],total:[2,3,16,18,24],toward:25,tracker:7,traffic:22,trajectori:[16,18],transact:[1,2,9,11,14,25],transax:21,transform:[1,9,21,22],transit:20,translat:[2,24],trapped_lov:18,treat:2,treatment:2,tree:[2,5,7,8,11,15,17,19,20,21,23,24,25],trouser:22,truncate_mod:15,truth:[1,9,17],ttagagcgcttaaccccacaggaaccgagttcccctcatgtggcaaggttctcccgcctcaggtatcacagaaacaaggtatgtagccctaggctacgagc:23,tune:[15,19],tunisia:20,turkei:20,turn:[2,15,21,24],tutori:7,twist:22,two:[1,2,5,9,15,22,24,25],twodiamond:18,twosplash:18,type:[2,6,22],typic:[2,17],ubuntu:24,uci:[18,25],ukrain:20,ult05:[17,25],ultrametr:[2,11],ultsch:25,unadjust:[1,9],unbal:18,under:[7,19],underli:1,undirect:14,unfortun:15,union:4,uniqu:[2,15,19,22,23],unit:20,unless:[2,24],unlik:5,updat:[4,21],url:25,usabl:[2,7,11],use:[2,4,7,10,11,23,24],used:[1,2,3,6,9,11,13,14,15,17,20,23,24],useful:[6,17,19],usefulness:17,user:[2,15,19,22,25],userid:22,userwarn:21,uses:[3,13,24],using:[2,11,14,25],usual:2,v11:25,valid:[1,9,11,17,20,23,25],valu:[1,2,3,4,6,15,21],vari:21,variabilita:[3,13],variabl:[2,11,14,17],varianc:[2,16,18,21,24],variant:[1,9,15,24],variou:[5,17],veb10:[18,25],vector:[1,2,3,4,5,6,9,11,13,17],verbos:[2,10,11,14,20],veri:[2,6,7,10,11,14,23,24],version:[1,2,7,9,11,15,16,17,18,22,24,25],versu:[1,9],vertex:[2,11],vertic:14,via:7,vietnam:20,vinh10a:25,vinh:[1,9,25],violat:[2,11],visibl:24,visual:[2,11,14,25],voronoi:15,wai:[2,5,17,19,22],wait:22,wallac:22,wanda:22,want:11,war:22,ward:[7,17,18,21,24],warn:[2,21],wdbc:18,weav:[15,20],websit:[21,22],weight:[2,11,14],welcom:7,well:[2,5,14,15,17],wellb:20,wellbalancedsocieti:20,were:[16,18,19,22,24],what:[2,19],whatev:19,when:[2,19],whenev:1,where:[1,2,3,4,5,6,9,11,13,14,16,22],wherea:15,wherev:18,whether:[2,10,11,14],which:[1,2,9,11,14,15,16,17,19,22,24],which_clust:22,whichev:4,white:20,whole:[2,7,11,22],whose:[2,4,6,11],wide:22,wiki:4,wikipedia:4,window:18,wine:18,wingnut:18,wise:18,within:[7,17],won:22,word:15,work:[2,6],workhors:20,workshop:25,worms_2:[18,24],worms_64:[16,18,24],wors:[16,24],worth:[2,11,15,17],would:[15,22],wrapper:1,wrong:22,wspace:21,wut:[16,18],www:[20,25],x86_64:24,x_1:[3,4,13],x_aniso:21,x_i:[3,4,13],x_j:[3,4,13],x_k:4,x_n:[3,13],x_oecd:20,xlim:21,xnn:25,xperienc:25,xtick:21,y_pred:[9,11,20,21],y_test:11,y_true:9,yeast:18,yellow:22,yemen:20,yet:20,yield:[2,3,13,16,22],ylim:[5,21],you:[4,5,11,14],young:22,your:14,ython:25,ytick:21,zealand:20,zenodo:25,zero:22,zhang:[2,10,25],zhong:25,zigzag:18,zigzag_noisi:18,zigzag_outli:18,zimbabw:20,zimek:[2,11,14,25]},titles:["Python Package <cite>genieclust</cite> Reference","genieclust.compare_partitions","genieclust.Genie","genieclust.inequity","genieclust.internal","genieclust.plots","genieclust.tools","<cite>genieclust</cite>: Fast and Robust Hierarchical Clustering with Noise Point Detection","R Package <em>genieclust</em> Reference","comparing_partitions: Pairwise Partition Similarity Scores","emst_mlpack: Euclidean Minimum Spanning Tree","gclust: The Genie++ Hierarchical Clustering Algorithm","genieclust-package: The Genie++ Hierarchical Clustering Algorithm (with Extras)","inequity: Inequity (Inequality) Measures","mst: Minimum Spanning Tree of the Pairwise Distance Graph","Basics","Benchmarks \u2014 Approximate Method","Benchmarks (How Good Is It?)","Benchmarks \u2014 Detailed Results","Clustering with Noise Points Detection","R Interface Examples","Comparing Algorithms on Toy Datasets","Example: Sparse Data and Movie Recommendation","Example: String Data and Grouping of DNA","Timings (How Fast Is It?)","References"],titleterms:{"break":15,"function":24,Ice:15,The:[11,12],algorithm:[11,12,21],also:[11,14,25],ami:18,approxim:16,argument:[9,10,11,13,14],author:12,basic:15,benchmark:[16,17,18],cluster:[7,11,12,19],compar:21,compare_partit:1,comparing_partit:9,comparis:19,comparison:15,data:[22,23],dataset:[17,18,21,24],dendrogram:15,descript:[9,10,11,12,13,14],detail:[9,11,13,14,18],detect:[7,19],distanc:14,dna:23,emst_mlpack:10,euclidean:10,exampl:[9,11,13,14,20,22,23],extra:12,factor:19,fast:[7,24],further:15,gclust:11,geni:[2,11,12],genieclust:[0,1,2,3,4,5,6,7,8,12],good:17,graph:14,group:23,hdbscan:[15,19],hierarch:[7,11,12],how:[17,24],indic:7,inequ:[3,13],interfac:20,intern:4,larg:[17,18,24],mean:15,measur:13,method:16,minimum:[10,14],movi:22,mst:14,nacc:18,nmi:18,nois:[7,19],number:24,packag:[0,8,12],pairwis:[9,14],partit:9,plot:5,point:[7,19],psi:18,python:0,read:15,recommend:22,refer:[0,8,9,10,11,13,14,25],result:18,robust:7,score:9,see:[11,14,25],similar:9,small:[17,18],smooth:19,span:[10,14],spars:22,string:23,summari:[17,18,24],tabl:7,thread:24,time:24,toi:21,tool:6,tree:[10,14],usag:[9,10,11,13,14],valu:[9,10,11,13,14]}})
\ No newline at end of file
+Search.setIndex({docnames:["genieclust","genieclust_compare_partitions","genieclust_genie","genieclust_inequity","genieclust_internal","genieclust_plots","genieclust_tools","index","news","rapi","rapi/comparing_partitions","rapi/emst_mlpack","rapi/gclust","rapi/genieclust-package","rapi/inequity","rapi/mst","weave/basics","weave/benchmarks_approx","weave/benchmarks_ar","weave/benchmarks_details","weave/noise","weave/r","weave/sklearn_toy_example","weave/sparse","weave/string","weave/timings","z_bibliography"],envversion:{"sphinx.domains.c":2,"sphinx.domains.changeset":1,"sphinx.domains.citation":1,"sphinx.domains.cpp":3,"sphinx.domains.index":1,"sphinx.domains.javascript":2,"sphinx.domains.math":2,"sphinx.domains.python":2,"sphinx.domains.rst":2,"sphinx.domains.std":1,"sphinx.ext.todo":2,"sphinxcontrib.bibtex":4,sphinx:56},filenames:["genieclust.rst","genieclust_compare_partitions.rst","genieclust_genie.rst","genieclust_inequity.rst","genieclust_internal.rst","genieclust_plots.rst","genieclust_tools.rst","index.rst","news.rst","rapi.rst","rapi/comparing_partitions.rst","rapi/emst_mlpack.rst","rapi/gclust.rst","rapi/genieclust-package.rst","rapi/inequity.rst","rapi/mst.rst","weave/basics.rst","weave/benchmarks_approx.rst","weave/benchmarks_ar.rst","weave/benchmarks_details.rst","weave/noise.rst","weave/r.rst","weave/sklearn_toy_example.rst","weave/sparse.rst","weave/string.rst","weave/timings.rst","z_bibliography.rst"],objects:{"genieclust.Genie":{fit:[2,1,1,""]},"genieclust.compare_partitions":{adjusted_fm_score:[1,3,1,""],adjusted_mi_score:[1,3,1,""],adjusted_rand_score:[1,3,1,""],compare_partitions2:[1,3,1,""],compare_partitions:[1,3,1,""],confusion_matrix:[1,3,1,""],fm_score:[1,3,1,""],mi_score:[1,3,1,""],normalize_confusion_matrix:[1,3,1,""],normalized_accuracy:[1,3,1,""],normalized_confusion_matrix:[1,3,1,""],normalized_mi_score:[1,3,1,""],pair_sets_index:[1,3,1,""],rand_score:[1,3,1,""]},"genieclust.inequity":{bonferroni_index:[3,4,1,""],gini_index:[3,4,1,""]},"genieclust.internal":{DisjointSets:[4,0,1,""],GiniDisjointSets:[4,0,1,""]},"genieclust.internal.DisjointSets":{find:[4,1,1,""],get_k:[4,1,1,""],get_n:[4,1,1,""],to_list:[4,1,1,""],to_list_normalized:[4,1,1,""],to_lists:[4,1,1,""],union:[4,1,1,""]},"genieclust.internal.GiniDisjointSets":{find:[4,1,1,""],get_count:[4,1,1,""],get_counts:[4,1,1,""],get_gini:[4,1,1,""],get_k:[4,1,1,""],get_n:[4,1,1,""],get_smallest_count:[4,1,1,""],to_list:[4,1,1,""],to_list_normalized:[4,1,1,""],to_lists:[4,1,1,""],union:[4,1,1,""]},"genieclust.plots":{plot_scatter:[5,3,1,""],plot_segments:[5,3,1,""]},"genieclust.tools":{argkmin:[6,4,1,""],cummax:[6,4,1,""],cummin:[6,4,1,""]},genieclust:{Genie:[2,0,1,""],compare_partitions:[1,2,0,"-"],inequity:[3,2,0,"-"],internal:[4,2,0,"-"],plots:[5,2,0,"-"],tools:[6,2,0,"-"]}},objnames:{"0":["py","class","Python class"],"1":["py","method","Python method"],"2":["py","module","Python module"],"3":["py","function","Python function"],"4":["py","attribute","Python attribute"]},objtypes:{"0":"py:class","1":"py:method","2":"py:module","3":"py:function","4":"py:attribute"},terms:{"000":[18,25],"000000":21,"00017":[2,26],"001":22,"003":[2,4,14,26],"004013":21,"005":18,"007":6,"00726":[2,26],"0167":[2,26],"021185":21,"025":18,"031":25,"056494":21,"060":6,"061":6,"067901":21,"072":6,"073":6,"074134":21,"074894":21,"075":6,"081801":21,"084":25,"0_approx":17,"100":[5,6,18,25],"1000":25,"10000":[22,25],"100000":25,"1000000":25,"100000000":6,"10029":26,"1007":26,"100836":23,"100d":17,"1016":[2,4,14,26],"102542":21,"10475":23,"105":[18,25],"105000":25,"105539":21,"105600":25,"1058":23,"108":26,"1109":[1,26],"111":25,"1113":23,"1125":23,"113":25,"11346":25,"1145":[2,26],"1197":23,"1211":23,"122":26,"1232":23,"1234":22,"1250":23,"12m":25,"130701":21,"1313":[2,15,26],"132":25,"13239":23,"1325":[2,15,26],"13327":23,"13328":23,"1389":15,"1394":23,"1401":15,"140138":21,"144":23,"148":17,"1486":23,"1487":23,"1500":22,"154":21,"154272":21,"158":25,"159":26,"16021":25,"161":26,"1627":25,"164":26,"1657":25,"168":6,"1691":25,"16th":26,"170":22,"174":17,"1745":25,"1796":23,"1835804":26,"1835882":26,"1912":[3,14],"1914":23,"193":[1,10,26],"1930":[3,14,15],"1933":23,"1957":15,"1960":23,"1964":23,"1965":23,"1967":23,"1968":23,"197":16,"1973":[23,26],"1974":23,"1975":23,"1977":23,"1979":23,"1980":23,"1982":23,"1983":[23,26],"1984":23,"1985":[1,10,23,26],"1986":23,"1987":23,"1988":23,"1989":23,"1990":23,"1991":23,"1992":23,"1993":23,"1995":[2,15,23,26],"1996":[23,26],"1997":23,"1998":23,"1999":[23,26],"1_approx":17,"1a2":7,"1st":21,"200":23,"2000":23,"2005":26,"2009":26,"2010":[1,2,10,11,26],"2011":[1,10,26],"2012":26,"2013":26,"2014":25,"2015":[2,12,15,26],"2016":[1,2,4,10,12,14,26],"2017":26,"2018":[2,7,11,23,26],"2019":[2,26],"202":25,"2020":[7,23,26],"2021":7,"2036":23,"203906":21,"205":26,"207":26,"2084":23,"2094":23,"2097":23,"21105":[2,26],"212197":21,"217":[25,26],"2173":[1,10,26],"2174":23,"2175":25,"218":[1,10,26],"2186":[1,10,26],"2190":23,"2216":23,"224":23,"225":25,"2259":23,"226":26,"231":26,"2382":23,"23rd":26,"242":25,"2443":23,"255":26,"2551240":[1,26],"2605":23,"264":[17,26],"266":25,"267":25,"268879":21,"2703":23,"27284":23,"2733381":[2,26],"274155":21,"27448":23,"276":16,"277173":21,"2772":23,"27753444":23,"2778":23,"2792":23,"2825":26,"2830":26,"2837":[1,10,26],"2854":[1,10,25,26],"2861":23,"2888":23,"2891":23,"2892":23,"289224":21,"2907":23,"2916":23,"292":17,"2963":23,"299":6,"299537":21,"2997":25,"2fs":22,"2nd":6,"300326":21,"3010":23,"3016":23,"307":17,"3097983":26,"3098079":26,"319":26,"3241080446115835":16,"326":17,"329":6,"332":17,"3341":23,"336496":21,"340152":21,"340636":21,"341":26,"350592":21,"357":25,"363":[2,4,12,14,26],"374348":21,"376":17,"3776":26,"377eb8":22,"3815066":26,"383":26,"388":6,"389867":21,"390":6,"3927":25,"3_approx":[17,25],"3_mlpack":25,"3_nomlpack":25,"403":6,"409":17,"4114":25,"412":25,"414":6,"415":17,"4170":25,"420523":21,"421":25,"434233":21,"436303":21,"4384":25,"4388":25,"4408":25,"445":25,"446943":21,"447":[6,17],"4486":25,"453451":21,"4581":23,"4716":23,"4743":26,"4757":25,"4759":26,"49055":26,"4945":25,"4daf4a":22,"500":23,"50000":25,"500000":25,"505":6,"508130":21,"512709":21,"516":17,"522":26,"5281":26,"531":17,"53889x283228":23,"539498":21,"541081":21,"543":26,"553":26,"555":17,"568":17,"569":26,"590927":21,"593052":21,"594718":21,"5_approx":17,"600":[18,25],"6006":23,"6027":23,"603":[2,11,26],"605769":21,"60ghz":25,"611":[2,11],"612":26,"621681":21,"624":17,"624147":21,"627805":21,"630009":21,"634251":21,"639":6,"662674":21,"663252":21,"6698":23,"673":6,"692808":21,"70000":25,"708":23,"715":25,"719":[17,25],"726":[2,11,26],"728":17,"731":17,"732":23,"734":17,"753476":21,"755":17,"759396":21,"7708":25,"778":25,"781637":26,"784":25,"794":25,"7_19":26,"7_approx":17,"817850":21,"819":23,"8191":[2,26],"820":23,"827154":21,"829620":21,"831955":21,"836":23,"839":23,"844":17,"850":23,"854317":21,"863":23,"868176":21,"886885":21,"895167":21,"898":23,"898812":21,"899":23,"911":23,"921":23,"931156":21,"934":23,"9352814722212013":24,"955":23,"959609":21,"964":23,"964981247":23,"964982224":23,"964982703":23,"964982931":23,"964983815":23,"969":23,"9724x610":23,"972848":21,"9750h":25,"977":23,"978":26,"984ea3":22,"987":23,"992649":21,"999999":22,"\u03c3":14,"bor\u016fvka":11,"break":[7,25],"c_\u03c3":10,"case":[2,4,5,12,15,17,19,25],"catch":22,"char":21,"class":[0,2,4,11,12,15,16,23],"default":[2,12,15,16,18,20,21,25],"final":21,"float":[2,6,12,15],"fr\u00e4nti":26,"function":[1,4,5,6,7,8,10,16],"import":[5,7,16,20,22,23,24,25],"int":[2,5,6,22,23],"jarn\u00edk":[2,15,25],"jist\u00e9m":15,"m\u00fcller":26,"m\u00fcllner":26,"minim\u00e1ln\u00edm":15,"moravsk\u00e9":15,"new":[2,4,7,12,14,20,21,23,26],"null":10,"p\u0159\u00edrodov\u011bdeck\u00e9":15,"pr\u00e1ce":15,"probl\u00e9mu":15,"return":[1,2,3,4,6,12,20,23],"spole\u010dnosti":15,"switch":[8,20],"true":[2,12,15,16,20,24,25],"try":[2,12,18],And:23,Being:23,Eqs:[1,10],Eyes:23,For:[2,3,4,11,14,16,17,18,20,21,25],IDs:[4,23],Ice:7,Its:[2,7,12,16],One:[2,3],Sys:15,The:[1,2,3,4,5,6,7,8,9,14,15,16,17,18,20,21,22,23,24,25,26],Then:[7,19,22,23],There:22,These:[3,10,14],Use:[8,12],a65628:22,aardman:23,abil:15,abl:[2,7,12,16],about:25,abov:[2,12,16,19,23],abridg:23,abundez:[1,10],accept:[1,2,15],access:11,accord:[2,12],accuraci:[1,10,19],achin:26,acm:[2,11,12,15,26],across:17,act:[2,7,12],actg1:24,actual:[1,2],adapt:7,added:[8,17,19,25],adding:2,addition:2,adjac:[2,12],adjust:[1,10,16,17,18,19,21,24],adjusted_fm_scor:[1,10],adjusted_mi_scor:[1,10],adjusted_rand_scor:[1,10,12,16,24],affect:[2,16,18],affin:[2,18,23,24],afm:1,after:[2,7],again:[17,20],against:[16,18,25],agglom:[16,18,25,26],agglomerativeclust:22,aggreg:[18,19,21],agpl:7,agreement:[1,10,18,19],aim:1,airplan:23,albania:21,albeit:[2,25],alert:17,algeria:21,algo_param:22,algorithm:[1,2,3,4,7,8,9,11,14,15,16,17,18,19,20,23,25,26],all:[2,3,4,5,12,14,15,17,18,25],alloc:21,allow:[4,7,18,20,24,25],almost:[6,23,25],alongsid:18,alpha:20,alreadi:3,also:[1,7,10,16,18,20,21,22,23,24,25],altern:[2,12,15,25],although:17,altogeth:17,alwai:[1,4,5,10],amend:8,american:26,ami:1,ami_:10,amongst:[2,3,12,14,16,25],amuel:26,analysi:[2,11,15,26],analyz:23,angola:21,angulardist:2,angulardist_spars:2,ani:[2,5,7,20,25],animatio:23,aniso:22,anisotrop:22,anna:8,anoth:[7,16],anywai:2,api:[7,8,16,19,26],appeal:[2,7,12],appendix:[7,18],appli:[1,2,12,16,18,20,25,26],applic:[2,3,11,14,19,26],approach:[2,7,12,26],approxim:[2,7,8,23,25],arabi:[1,10,26],arbitrari:[2,12],archiv:26,argentina:21,argkmin:6,argmin:6,argsort:6,argu:2,argument:[2,5],ariant:26,arithmet:[12,15],arizmendi:[1,10],armenia:21,around:1,arrai:[1,2,4,6,16,22],array_lik:[1,5],art:[23,26],ascend:6,ascii:2,ask:20,asp:12,assign:[1,3,5,10,14,16,24],associ:26,assum:2,assumpt:4,assur:2,ast:26,astel:26,astyp:22,atgtctccaaagcgtgaccttctagacccgagacgacatatggaggcttggagccgtacctgtgtgaggaaactgtagtacccaaagctattca:24,atom:19,attribut:[2,15],augment:4,australia:21,austria:21,auto:[2,25],autom:8,automat:25,avail:[2,7,8,18,21,25],averag:[7,18,19,21,22],avoid:22,awai:[2,3,12,14,15],axi:[2,5,16,20],back:[16,23],bailei:[1,10,26],ball:23,bartoszuk:[2,4,12,14,26],base:[1,2,8,10,11,12,18,19,21,23,24,25,26],basic:[7,21],basicne:21,basket:23,batteri:[17,18],bdist:8,becom:[2,25],been:[8,19,25],behav:17,behind:7,being:[2,4,12,15],belgium:21,bell:15,belong:16,below:[1,2,10,18,21,22],benchmark:[1,2,7,12,16,21,24,25,26],best:[2,12,18,19,23],better:[17,18,21],between:[1,2,6,10,12,15,16,17,18,19,20,23,24],beyond:16,bf01908075:26,biject:[1,10],birch1:19,birch2:[17,19],birch:[7,18],birch_0:[18,19],bit:[2,12,15,17,19,25],bit_ham:2,bit_jaccard:2,black:5,blackadd:23,blob:[2,22,25,26],blue:[5,23],boi:23,bolivia:21,bologna:[3,14],bonferroni:[3,14],bonferroni_index:[3,14],book:21,bool:[2,3],both:[1,2,3,10,14],bottl:23,bottom:22,bound:[1,10],boundari:[2,12,15],bowfing:23,bowl:23,box:22,boxplot:18,boytsov:[2,26],branching_factor:18,brian:23,bride:23,broken:8,brother:23,bugfix:8,build:8,buitinck:26,c_contigu:1,cach:25,call:[1,2,4,5,12,21,23,25],campello:[2,12,15,26],can:[1,2,3,5,7,8,10,12,14,15,16,20,21,24,25],canada:21,cannot:16,cardin:[2,4,25],care:2,carol:23,cast:2,cast_float32:[2,12,15,21,24],catch_warn:22,categor:21,categori:[21,22],catmethod:21,ceil:5,cel:[25,26],cell:23,cena:[2,4,8,12,14,26],center:5,centr:[2,17,19,25],centroid:[18,19,25],chain:8,chainlink:19,chameleon:26,chameleon_t4_8k:19,chameleon_t5_8k:19,chameleon_t7_10k:19,chameleon_t8_8k:19,chanc:[1,10,26],chang:[1,2,18,25],charact:24,characterist:22,check:21,children_:[2,16],chile:21,choic:25,choos:[2,12],chose:17,chosen:[2,12,15],christma:23,circl:19,cityblock:[2,12,15],classic:[2,12],classif:[1,10,26],classifi:20,clearli:25,climateandenergi:21,close:23,closer:20,closest:[7,16],cluster:[1,2,3,4,8,9,10,14,15,16,17,18,19,21,22,23,24,25,26],cluster_std:22,clustering_algorithm:22,clustering_benchmarks_v1:[1,12,26],clusteringtheori:26,cmzs15:[7,16,20,26],coarser:[2,20],coarsest:2,code:[7,8],coercibl:[2,10,11,12,15],coffe:[7,25],col:[5,12],collect:5,colombia:21,color:[5,21,22],colourpalett:21,column:[1,2,5,10,11,12,15,19,21],column_stack:16,com:[1,2,12,16,21,24,26],come:[1,16,24],comfort:23,comment:21,commun:[1,10],compar:[1,7,10,16,25,26],compare_partit:[0,7,16,19,24],compare_partitions2:1,comparing_partit:[7,9],comparis:7,comparison:[1,7,10,26],compat:[7,12,16,21,25],complet:[7,8,15,17,18,19,22,25],completel:23,complex:[2,3,14,15,25],compon:[2,22],compound:19,compress:[4,23],comput:[1,2,3,4,8,10,12,15,16,17,21,25,26],compute_all_cut:2,compute_full_tre:[2,16],conduct:2,confer:26,confus:[1,10,16],confusion_matrix:1,connect:[2,15,22],consecut:[23,25],consid:[17,18,21,23,25],constant:[3,14],constitut:2,construct:2,consum:[2,12],contain:4,conting:1,contrari:[2,20],contrib:26,contribut:7,control:[2,12,15,20],convers:23,convert:24,convex:[3,5,14,16],convexhul:5,coordin:[2,5,25],copi:22,core:[2,7,8,12,25],correct:[1,2,10,12,26],correspond:[1,2,5,12,15,16,17,20],cosin:[2,12,15,23],cosinesimil:2,cosinesimil_spars:[2,23],cost:[2,4],cote:21,count:[16,17,18,19],countri:21,counts_:[2,16],cours:[16,20,25],coverag:8,cpu:25,cran:[7,8,21],creat:[2,22],createindex:2,creatur:23,cross:19,crucial:25,cry:23,csr:23,csr_matrix:2,csv:[21,23],cummax:6,cummin:[2,6,12],cumprod:6,cumsum:6,cumul:6,cuppini:[3,14],current:4,curs:[23,25],curtin:[2,11,26],cut:2,cutre:[7,12,21],cycl:22,czech:21,d31:19,d_m:20,dai:23,dalton:[3,14],danifold:26,dasgupta:26,data:[1,2,3,6,7,10,11,12,14,15,16,20,21,22,25,26],data_typ:2,databas:[23,26],dataset:[1,2,7,10,12,15,16,17,20,21,23,24,26],datatyp:2,dbscan:[2,7,12,16],ddof:2,decim:[2,18],decreas:[2,3,14],dede00:22,default_bas:22,defin:[1,5,10,15,18],definit:[1,10,12,16,23],degrad:25,degre:24,demand:16,demonstr:[17,25],dendrogram:[2,7,12,21],denmark:21,denot:[2,4,12,16,18,19,20],dens:[1,2,19,23],densiti:[2,12,15,26],departur:12,depend:[2,7,12,25],depict:21,descend:6,describ:2,descript:[2,8,17,18],design:[4,26],desir:[12,18,21],detail:[1,2,7,11,13,16,18,21],detect:[2,12,15,21,25,26],detect_nois:12,detector:[2,7,12],determin:[1,2,7,8,15,23,25],devel:[16,21,24],dg19:[18,26],diagnost:[2,11,12,15],diagon:1,diagram:16,dict:[1,2,24],dictionari:[1,2],did:20,differ:[12,17,18,20,22,25],difficult:7,digit:[2,17,18,19,25],dijkstra:[2,15,25],dilemma:26,dimension:[2,8,11,12,15,17,25],dimnam:21,directli:[8,21],disabl:[2,12,20],disconnect:2,discov:[16,26],discoveri:[2,12,15,26],discrep:17,discuss:[18,25],disjoint:[1,4,5,10],disjointset:4,dispers:[3,14],dissimilar:2,dist:[12,15,21],distanc:[2,7,8,9,12,17,19,20,21,24,25],distances_:[2,16],distinct:5,distinguish:2,distribut:[2,4,7,12,18,22],dn09:[18,26],dna:7,document:[7,16,19,21],doe:[2,12,17,25],doesn:7,doi:[1,2,4,14,26],dok_matrix:23,domain:24,don:[21,23],done:25,dot:[3,4,22],doubl:[1,3,6],down:2,download:7,draw:5,drawn:5,dtype:[2,16,20,23,24],dua:26,dual:11,duck:23,due:[1,10],dure:[2,4,25],dynam:26,e41a1c:22,each:[1,2,4,5,7,12,15,17,18,19,20,21,25],eagerli:20,earli:22,easier:22,easili:[7,16,20,25],ecml:26,ecoli:19,econom:[3,14,16,21],economi:21,edel:[2,11,26],edg:[2,12,15],edit:24,edu:26,effect:[2,12,20,25],effici:[21,25],either:[2,5,15],eksx96:[16,26],elaps:25,elect:23,element:[1,2,3,4,6,10,12,14,23],elementi:[3,14],els:22,empir:[18,23],emst:[2,11,25],emst_mlpack:[7,9,12,15],emstreer:8,enabl:2,engin:26,engytim:19,enough:16,enumer:22,environ:[2,7,12,15],environment:21,episod:23,epp:[1,10,26],eps:[2,7,12,16],equal:[3,5,6,14,16,18,20],equip:16,equiti:[3,14],equival:[2,5],error:8,esp:10,especi:1,ester:26,estim:[2,12,15,26],estonia:21,etc:21,ethiopia:21,euclidean:[2,5,7,8,9,12,15,17,19,20,21,25,26],evalu:18,even:[2,3,7,20,25],everi:[1,10,19],everyth:21,evidenc:25,exact:[2,17,23,24,25],exactli:2,exampl:[1,3,5,6,7,8,16,20,22],excel:20,except:[1,4,10,17,21,25],exercis:23,exhal:23,expect:[1,5,10,18],experiment:[8,26],expert:[16,20,24],explicitli:[12,18,20],extern:[1,7,10,12,21,24,26],extra:[7,9,23],extract:[21,23,25],extrem:[7,25,26],f781bf:22,factor:[2,7,12,15,22],fail:[2,18],fals:[2,3,11,12,15,16,17,23,24,25],familiar:7,famou:23,far:16,fashion:[19,25],fast:[2,4,5,6,11,12,14,15,17,20,26],fastclust:[18,25,26],fastcluster_centroid:25,fastcluster_median:25,fastcluster_ward:25,faster:[2,7,8,12,15,17,21,24,25],fastest:[22,25],father:23,fcp:19,fear:23,featur:[2,11,12,15,16,17,19,20,21,23,25],feed:21,feel:[7,20],few:[1,2,16,18,21,23],ff7f00:22,fidel:23,figsiz:22,figur:22,file:[15,23],film:23,filterwarn:22,find:[4,6,7,20],fine:2,finer:20,finland:21,fire:17,firenz:[3,14],first:[4,5,7,12,16,20,22,23,25],fish:23,fit:[2,7,16,18,22,23,25],fit_predict:[7,16,20,23,24],fit_transform:22,fix:[5,8],flame:19,flexibl:[2,11,26],float32:[2,23],fly:[8,15],flynt:23,fm83:[19,26],fm_score:[1,10],fmiz16:[18,26],follow:[1,3,14,16],forc:[2,12],forest:[2,25],forget:21,form:[2,7,23],formal:2,format:[2,7,12,23],former:18,forth:23,forthcom:21,fortun:16,found:[2,20],fowlk:[1,10,19,26],frac:[3,4,14],frame:[11,12,15,21,23],franc:21,frankenstein:23,franti:[1,10],friendli:16,from:[1,2,3,5,7,10,11,12,14,15,16,17,18,19,20,21,22,23,25,26],fs18:[18,26],full:23,further:[5,7,12,15,25],furthermor:2,futur:23,fuzzi:26,fuzzyx:19,g2mg:[17,18],gacaattatcgcggctttcgccatgcagagtctcgtacaatttgtttcacgcccaatattttccgtgcttcgcgagctaggcagccagggcatttttgga:24,gagolew:[1,12,16,21,24,26],gagolewski:[2,4,7,12,13,14,26],gain:15,game:[22,23],gamma:18,gaussian:[2,17,18,19,25],gbc16:[7,16,18,20,24,26],gca:22,gcaattgaagtccagatctaggtatcgtccaagcatattgcctttaagaaatatatttgaccctgtctcttcgtggaggtacacgtcacggaatcgtaagatttccttgg:24,gclust:[7,9,15,21],gener:[1,2,4,6,8,12,16,17,18,22,25],general:[3,14],generalis:15,geni:[0,3,4,7,9,14,15,16,17,18,20,21,22,23,24,25,26],genie_0:[17,18,19,25],genie_1:17,genieclust:[16,17,18,19,20,21,22,23,24,25],geq:3,german:26,germani:21,get:[4,16,18,20,23],get_count:4,get_gini:4,get_k:4,get_n:4,get_smallest_count:4,ghaisa:[2,11,26],ghana:21,gic:8,gini:[2,3,4,12,14,16],gini_index:[3,12,14],gini_threshold:[2,12,16,17,18,20,21,25],ginidisjointset:4,github:[1,2,7,12,16,21,24,26],give:[1,2,3,5,10,12,14,15,16,18,21,24,25],given:[1,2,3,4,10,12,14,15,16,23,25],glanc:16,glass:19,glust:21,gnu:[7,25],goal:20,goe:[2,7,12],good:[2,7,17,20,25],gp10:[18,26],graff:26,grai:[2,11,16,26],grail:23,grain:2,grand:23,granular:[16,20],graph:[2,7,8,9,12,19,25,26],graphic:[5,16],grave:[19,26],greater:[2,21,25],greec:21,green:5,grei:20,grid:18,gromit:23,ground:[1,10,18],groundhog:23,group:[2,7,12,16,19,21],grumpier:23,guarante:2,guess:16,guffman:23,gun:23,h2mg:[17,18],h_oecd:21,ha85:[18,19,26],han:26,hand:[2,7,12,16,25],handi:1,handl:23,happen:16,hard:[16,23],has:[2,3,7,8,14,19,21,25],hasattr:22,have:[3,4,14,17,18,19,20,25],hclust:[7,12,21],hdbscan:[2,7,8,12,19,26],head:[21,23],header:7,heali:26,heat:19,height:12,help:23,henc:[1,2,7,10,12,18,25],hepta:19,her:8,here:[5,16,17,18,20,23,25],hierarch:[2,4,9,14,15,16,18,20,21,22,25,26],hierarchi:[2,7,12,16,23,25],high:[17,23,24,25],higher:[11,25],highest:18,highli:[2,7,12,25],hire:5,hnsw:2,hold:[2,3,6,12,14,15],holi:23,hollywood:23,hood:20,hope:23,horizontalalign:[5,22],how:[7,16,20,21,23],howev:[2,7,12,18,20,25],hspace:22,html:26,http:[1,2,4,11,12,16,21,24,26],hubert:[1,10,26],hull:5,human:21,hungari:21,hunt:23,i_dataset:22,iceland:21,ics:26,idea:[2,7,20],ident:[1,10,25],identif:20,identifi:[2,8,12,15,20,21],ieee:[1,10,26],ierarch:26,ignor:[2,22],iii:23,illustr:[22,23],iloc:23,imbalanc:[2,7,12],implement:[1,2,4,7,8,11,14,15,16,18,19,20,23,24,25],impli:8,importantli:25,includ:[2,18],inconsist:8,increas:[2,12,16,25],increasingli:[2,3,6,14],independ:[1,2,10],index:[1,2,3,4,6,7,10,12,14,16,17,18,19,21,24],indexthreadqti:2,indic:[1,3,5,14,15,16,17,19,21,24],individu:7,inequ:[0,2,7,9,16],inform:[1,2,4,10,12,14,15,18,19,26],init:2,initi:8,input:[1,2,7,10,12,14,15,16,21,23,25],ins:[2,4,14,26],insert:6,inspect:18,inspir:5,instal:[2,21],instanc:[2,25],instead:[2,8,12,15,16],integ:[1,2,4,5,6,10,12,23],intel:25,intellig:26,interact:[16,21],interest:21,interestingli:[17,18],interfac:[7,16],intern:[0,1,5,7,10],intp:[16,20,24],invari:2,ionospher:19,ireland:21,iri:[10,12,15,19],iris5:19,irrespect:25,is_sort:3,ish:16,isin:23,islic:22,isol:19,israel:21,issu:7,istodor:26,itali:21,item:[1,19],iter:2,itertool:22,itm:[18,19,26],its:[1,2,4,5,7,10,12,16,25],itself:[2,4,25],ivoir:21,jaccard_spars:2,jain:[16,19,26],japan:21,jarnik:8,jedi:23,jl05:[16,26],jmlr:26,john:23,join:16,joincod:21,joincountrydata2map:21,joss:[2,26],journal:[1,2,10,11,26],jumanji:23,just:[2,12,25],karypi:26,kdd:26,keep:[7,20],kei:1,kernel:[25,26],khk99:[18,26],king:23,kingdom:21,kmean:[10,16,25],kmkm17:[25,26],kneighbors_graph:22,knowledg:[1,2,10,12,15,26],known:[16,18,20],kobren:26,korea:21,kriegel:26,krishnamurthi:26,kruskal:[2,25],kumar:26,kwarg:5,l1_spars:2,l2_spars:2,label:[1,2,5,7,10,15,16,18,20,24],labels0:[16,20,24],labels_:[2,22],labels_geni:[16,20],labels_hdbscan:[16,20],labels_kmean:16,labels_nois:20,labels_pr:24,labels_tru:[16,20,24],labirynth:19,lampert:26,languag:[7,26],lao:21,laplacian:18,laptop:17,larg:[7,17,26],larger:[2,18,22,25],largest:1,larri:23,las:12,lastp:16,latest:21,latex:[2,26],latter:[2,5,18],latvia:21,law:26,lead:18,leaf:2,learn:[1,2,7,10,11,16,18,22,25,26],least:[2,17,18,20,25],leav:[2,12],lebanon:21,lectur:26,left:[2,3,16,22],len:[5,16,20,22,24],length:[1,2,4,5,6,10],leq:1,less:[2,17,25],lesser:18,let:[1,4,10,16,17,20,21,23,24,25],level:[2,12,25],leven:[2,24],levenshtein:24,lgorithm:26,librari:[2,7,11,12,15,16,21,26],libreria:[3,14],libya:21,licens:7,lie:16,life:23,light:20,like:[2,6,7,8,11,12,15,16,25],limit:[18,25],lin73:[16,26],line:[5,19],linear:[1,10],linf:2,linf_spars:2,ling:26,link:[7,12,16],linkag:[2,7,12,15,17,18,19,22,25],linkage_matrix:16,linux:25,list:[4,12,16,17,21,22,24,25],lithuania:21,littl:21,live:23,load:[16,20,23],loadtxt:[16,20,24,25],loaf:23,loc:23,locat:[2,6],logic:[11,12,15],lola:23,look:[7,20],low:[2,8,11,12,15,25],lower:18,lozhnikov:[2,11,26],lstrip:22,lsun:19,luxembourg:21,machin:[1,2,10,11,26],magic:[2,12,16],magnolia:23,mai:[1,2],main:1,make:[2,7,12,15,16],make_blob:22,make_circl:22,make_moon:22,malkov:[2,26],malkovich:23,mallow:[1,10,19,26],manhattan:[2,12,15],mani:[2,16,20],manual:[2,16,21,26],map:[19,23,26],mapcountrydata:21,mapdata:21,maptitl:21,march:[2,11,26],marek:[7,13,21],mariescu:26,mark:[2,12],marker:[5,20],markers:5,master:[2,16,21,24,26],match:[1,7,10,16,26],mathrm:1,matplotlib:[5,16,20,22],matrix:[1,2,5,10,11,12,15,16,21,22,23,24],matter:[1,5,23],mauritania:21,mauritiu:21,max:[1,2,5,6,12,15,17,18,19,22,23],maxim:[1,10,18],maximis:18,maximum:6,mccallum:26,mcinn:26,mcs:16,mcss:20,mean:[1,2,7,17,18,19,20,21,23,25,26],meaning:[7,17,22],measur:[1,3,7,9,10,12,16,19,21,26],median:[17,18,19,25],meet:8,member:[4,7,21,23],membership:4,memori:[2,6,7,15,25],men:23,menac:23,mentekidi:[2,11,26],mention:[20,24],merg:[2,4,7,12,16],messag:[2,11,12,15,22],meta:23,method:[2,7,12,15,16,18,21,22,25,26],metric:[2,11,12,15,16,24,25,26],mexico:21,mha17:[20,26],mi_scor:[1,10],might:[1,2,6,7,10,12,15,16,18,20,25],million:[7,16,17],min:[1,6,17,18,19],min_cluster_s:[2,12,16,20],min_sampl:20,mind:[16,25],mine:[1,10,26],minimum:[2,5,6,7,8,9,12,18,20,25,26],minor:8,minut:17,miss:12,missingcountrycol:21,mixtur:[18,19],mk1:19,mk2:19,mk3:19,mk4:19,mlpack:[2,8,11,25,26],mlpack_en:[2,25],mlpack_leaf_s:2,mnist:[19,25],model:26,modul:[0,7,26],monath:26,monti:23,more:[1,2,3,6,7,13,16,18,19,20,21,25],moreov:[1,2,15,18,20,25],most:[12,16,22,25],moulavi:[2,12,15,26],movi:7,movieid:23,movielen:23,mrg10:[25,26],mrk:5,mrk_recycl:5,msnowozinl12:[18,26],mss:20,mst:[2,5,7,9,11,12,21,25,26],mst_from_dist:5,much:[2,8,16,17,18,25],mul13:[18,25,26],multipl:[1,15,18,26],must:[2,4,5],mutabilita:[3,14],mutual:[1,2,7,8,10,12,15,19,20],n_cluster:[2,7,16,18,20,22,23,24,25],n_clusters_:2,n_featur:2,n_features_:2,n_init:[18,25],n_neighbor:22,n_sampl:[2,22],n_samples_:2,nacc:1,naidan:[2,26],naiv:4,nake:23,name:[2,15,21,22,23],namecolumntoplot:21,namejoincolumn:21,namibia:21,nan:19,natur:20,naturalresourc:21,nbmn19:[7,25,26],ncl:16,ncol:5,ncs:20,ndarrai:[1,2,3,4,6],ndmin:[16,20,25],nearest:[2,7,8,12,15,16,17],neat:20,necessarili:[6,17],need:[2,4,25],neg:[1,3,10,14],negdotprod:2,negdotprod_spars:2,neighbour:[2,7,8,12,15,16,17,23,24,25],neither:4,nest:16,net:26,netherland:21,network:15,nicaragua:21,nice:[16,22,25],night:23,nip:26,nmi:1,nmi_:10,nmrk:5,nmslib:[2,7,8,17,23,24,25,26],nmslib_n_neighbor:2,nmslib_params_index:[2,24],nmslib_params_init:2,nmslib_params_queri:2,no_label:16,no_structur:22,nois:[2,12,15,16,17,19,21,22,25,26],noisy_circl:22,noisy_moon:22,non:[2,3,14,20,23,26],non_nois:20,nondecreasingli:[4,15],none:[2,5,12,22],nonempti:[1,10],nor:4,normal:[1,10,22,26],normalis:[1,3,4,14,19],normalize_confusion_matrix:1,normalized_accuraci:[1,10],normalized_confusion_matrix:[1,16],normalized_mi_scor:[1,10],normleven:2,north:21,norwai:21,note:[1,2,3,4,5,6,7,10,12,15,16,17,21,22,25,26],noteworthi:17,notion:[2,12,16],novak:[2,26],now:[2,8,12,20,23,25],nowozin:26,number:[2,3,4,7,12,14,15,16,18,20,21,22],numer:[2,3,11,12,14,15],numpi:[2,6,8,16,20,22,23,24,25],object:[2,10,11,12,15,16,21,22,23],observ:[1,2,10,15,17,18,23,25],obtain:[2,12,16,20,21,24],occur:12,octob:23,oecd:21,off:5,often:[2,7,12,16],old:[20,23],old_movieid_map:23,oliv:23,ols95:[25,26],olson:[2,15,26],olymp:19,omit:18,omp_num_thread:[2,12,15],onc:[2,5,12,20,25],one:[2,3,5,7,11,12,14,15,16,17,19,20,23,24,25],ones:[2,17,20],onli:[2,5,7,12,16,17,18,21,22,23,25],onto:1,open:[2,7,11,26],openmp:8,oper:4,option:2,order:[2,3,4,6,12,14,21,25],org:[4,11,26],organ:26,orient:16,origin:[1,2,7,12,15,16,17,20,22,25],other:[2,3,4,7,11,12,14,15,16,18,19,23,25,26],otherwis:[2,4,12,14,15],our:[2,17,20,23,25],ourselv:[18,21],out:[2,16,21,22,23,25],outcom:[17,18],outlier:[2,4,7,12,14,15,26],outperform:[2,7,12,16,18],output:[1,2,10,16,17,18,22],over:[4,11,18],overal:[18,25],own:7,packag:[2,4,5,7,8,16,18,19,20,21,23,24,25],page:[7,26],pair:[1,5,7,10,19,21],pair_sets_index:[1,10,12],pairwis:[1,2,7,9,12,25],palett:21,panama:21,panda:[16,20,23],paolo:[3,14],paper:[11,26],parabol:19,parallel:[2,15,26],parallelis:[2,8,11,12,15,25],param:22,paramet:[1,2,3,4,5,6,7,12,16,17,18,20,22,25],parameteris:20,parametr:18,parent:4,part:[2,18,23,25],partial:21,particular:[5,14,16,17],partit:[1,2,4,7,9,12,16,18,19,20,21,22,25,26],pass:[2,12,15],path:4,pathbas:19,patriot:23,pattern:26,pch:12,pdf:[2,5,11,26],pdist:2,pedregosa:26,pedrycz:26,penalis:[2,12],peopl:23,perceiv:[3,14],perfect:[3,14,16,18,19],perfectli:7,perform:[2,12,17,19,23,24,25],perhap:18,permut:[1,3,10,14],person:6,personaldevelopmentandhealth:21,pessimist:4,phantom:23,phd:8,physic:25,pictur:16,pigou:[3,14],pivot:[1,16],pkdd:26,plai:20,plausibl:18,plot:[0,2,7,12,16,20,21,22],plot_num:22,plot_scatt:[5,16,20],plot_seg:5,plt:[5,16,20,22],png:5,point:[2,5,12,15,16,17,18,21,25],poland:21,poli:18,polic:23,policeman:23,polici:8,pool:25,poor:[3,14],popul:18,popular:16,portug:21,posit:6,possibl:[1,10,16,21],post:[2,24],postprocess:[2,12],power:7,practic:[6,16],precis:[2,12,15,17],precomput:2,predecessor:2,predefin:[2,7,12],predict:[16,17,18,20,22],prefer:[1,6,10],preprocess:[2,19,22],presenc:10,present:19,pretti:5,prevent:[2,7,12],preview:[21,24],previou:[17,25],prim:[2,8,11,15,25],princess:23,principl:[3,14,26],print:[2,11,12,15,21,23,24,25],probabl:[1,10,26],problem:[1,10,25],proc:[2,11,26],procedur:[2,20,22],process:2,produc:[8,23],product:6,progress:[2,12,15],project:[20,23,26],properti:[1,2,5,10,12,26],propos:8,provid:[2,11,12,18,20,25],psi:[1,10],publish:[2,7],pull:[2,12,15],puriti:[1,10,19],pypi:[7,8],pyplot:[5,16,20,22],python:[7,8,16,21,23,25,26],python_bind:26,quadrophenia:23,qualiti:[16,18,25],quantifi:[1,2,3,10,14,17,18],question:25,quickli:25,quiroz:[1,10],quit:18,r15:19,rabb:23,rais:[2,12],ram:[2,11,23,26],rand:[1,10,16,17,18,19,21,22,24],rand_scor:[1,10],randn:5,random:[5,6,22],random_st:22,randomli:6,rang:[5,16,17,20],rank:[4,18,19],rate:23,rather:2,raw:[2,12,15,19],rbf:18,rcppmlpack:8,reachabl:[2,7,8,12,15,20],read:[7,19,21,23],read_csv:23,readabl:21,real:[2,10],realli:4,reason:[18,21],recal:[17,25],recognit:26,recommend:[7,16,17,18,25],recomput:[4,25],record:2,recurs:4,red:[5,23],refer:[1,2,3,7,16,17,18,19,20,21,24,25],regard:21,region:16,reimplement:12,rel:7,relat:22,releas:[8,21],reli:[2,4,8,16,17,20,23,24],reloc:1,remap:1,remov:[17,19,20,25],rendon:[1,10],rennt:23,repeat:5,replac:20,report:18,repositori:[21,26],repr:23,repres:[1,4,10,15],republ:21,request:[2,15,25],requir:[2,8],research:[1,10,26],reserv:8,resist:[2,4,7,12,14,26],resourc:25,respect:[1,2,5,7,8,10,12,15,17,19,20,23,25],restart:25,restrict:[18,21],result:[1,2,4,7,10,12,16,17,18,20,22,25],rev:12,reveal:20,review:23,rewritten:8,rezaei:[1,10,26],rf16:[19,26],rich:[3,14,18],right:[3,22],ring:19,ring_noisi:19,ring_outli:19,rmd:24,robinhood:3,robust:[2,12],robustifi:[2,7,12,16],rocket:23,romania:21,round:[1,3,18],routin:[12,23,24,26],row:[1,2,10,15,19,21,23],run:[2,4,6,12,17,22,23,25],rushmor:23,russia:21,rworldmap:21,safe:25,sai:[2,11,21],sake:16,same:[1,4,5,10,16,18,23,25],sampl:[3,14,18,21,22],sander:[2,12,15,26],scale:[2,17,18,19,21,25],scatter:[5,16,20,22],scheme:6,schur:[3,14],scienc:[2,4,12,14,26],scikit:[7,16,18,22,25,26],scipi:[2,5,16,23],score:[1,3,7,9,12,14,16,18,19,21],script:[8,22],search:[7,17,23,24,25],searchsort:23,seber:[3,14],sec:23,second:[4,25],secret:23,section:[16,17,18,19,25],see:[1,2,4,5,7,10,11,13,16,17,18,19,21,24,25],seed:22,seem:16,seen:17,segment:5,select:[12,15,22],self:[2,26],sens:18,separ:15,sequenc:16,seri:[1,25],set:[1,2,3,4,5,7,10,12,14,15,16,18,19,20,21,22,24,25,26],set_data_structur:4,set_param:25,setenv:15,setquerytimeparam:2,shape:[1,2,4,5,16,20],shave:23,shortest:15,should:[2,12,16,18],shouldn:16,show:[5,16,20,22,23],show_leaf_count:16,shut:23,side:16,sieranoja:26,sight:23,sigkdd:[2,11,26],sigma:[1,3],sigmoid:18,signific:18,sim:16,similar:[1,7,9,12,16,17,18,19,21,23,24],similarli:[1,10],simpl:[7,23],simplic:[2,5,7,12],singl:[2,10,12,17,18,19,22,25,26],sipu:[17,19,25],site:20,six:26,size:[2,3,4,7,12,14,15,16,22,25],sklearn:[16,22,25],sklearn_kmean:25,slightli:25,slovak:21,slovenia:21,slow:[4,15,25],slower:25,small:[1,2,6,7,12,17,23,25],smaller:[4,18,21],smallest:[2,4,6,7,12,16],smell:23,smile:19,smooth:[2,7,12,15],smp:25,societi:21,softwar:[2,11,26],solari:8,solut:[1,2,10,18],solv:[7,25],som:26,some:[1,2,4,7,8,10,15,18,19,25],somehow:[2,7,12],someth:23,sometim:[1,2,7,10,18],somewhat:16,somewher:16,sonar:19,sort:[2,3,6,14,15,25],sort_valu:23,soup:23,sourc:[2,7,11,18,26],south:21,space:[2,8,11,12,15,16,17,25,26],spain:21,span:[2,5,7,8,9,12,18,20,25,26],spars:[2,7],spatial:[2,5,26],specif:[21,22],spectral:18,spectral_rbf_5:[18,19],speed:16,sphinx:[16,21,24],spinal:23,spiral:19,splendid:7,split:16,spoiler:17,sqrt:[2,4,25],squad:23,squar:[2,19],squareform:2,ssfindex:21,ssi:21,ssi_2016_categori:21,ssize_t:4,stabl:[2,16,18,21,26],stage:[2,19],standardis:[2,12],standardscal:22,star:23,stat:21,state:21,statist:[6,17,18,19,26],statistica:[3,14],statlog:19,std:[2,17,18,19],stderr:2,step:20,still:[20,25],sting:23,stop:22,store:[2,23,25],stori:23,str:[2,24],strang:16,strike:23,string:[2,7],stripe:19,structur:[2,25],studi:[18,25,26],style:5,subgroup:16,subject:18,submarin:23,suboptim:15,subplot:[16,20,22],subplots_adjust:22,subset:[1,4,10],subtract:16,suggest:[2,18],suit:[1,7,17,18,19,25,26],suitabl:[2,25],sum:[1,6,10],sum_:[3,4],summari:7,summaris:[1,16,19],support:[2,7,8,23],surpris:16,sustain:21,sweden:21,switzerland:21,symbol:16,synonym:[2,12,15],synthet:25,syst:15,system:[25,26],tabl:[1,10,23],take:[2,3,12,14,17,23,25],taken:2,tap:23,target:19,task:[2,7,15,25],tataacaaccctgattacatcaagctacgctccggtgcgttgcctcggacgagtgctaatccctccccactgactgtattcatcttgacaata:24,tech:15,temporarili:20,tend:[2,18,20],term:16,terrestri:23,test:[8,12,18],tetra:19,text:[5,22],thailand:21,than:[2,4,17,21,25],thank:[7,25],thei:[2,3,10,14,17,18,23,25],them:[16,20],themself:2,theoret:[1,10,18,26],theori:26,therefor:[2,5,7,12,25],therein:1,thesi:8,thi:[1,2,4,5,12,15,16,17,18,19,20,21,22,23,24,25],thou:23,thousand:16,thread:[2,7,12,15],three:23,threshold:[2,12,16,18],thrown:4,tile:5,time:[2,3,4,6,7,12,14,15,18,21,22],timestamp:23,tini:[2,17,19,25],tinytest:8,tipografia:[3,14],titl:[5,16,20,22,23],tkde:[1,26],to_list:4,to_list_norm:4,tocsr:23,todens:23,togeth:[2,12,16],toi:[7,23],tolist:24,tommi:23,too:[2,15,16],tool:[0,2,7],top:[2,22,23,25],total:[2,3,17,19,25],toward:26,tracker:7,traffic:23,trajectori:[17,19],transact:[1,2,10,12,15,26],transax:22,transform:[1,10,22,23],transit:21,translat:[2,25],trapped_lov:19,treat:2,treatment:2,tree:[2,5,7,8,9,12,16,18,20,21,22,24,25,26],trouser:23,truncate_mod:16,truth:[1,10,18],ttagagcgcttaaccccacaggaaccgagttcccctcatgtggcaaggttctcccgcctcaggtatcacagaaacaaggtatgtagccctaggctacgagc:24,tune:[16,20],tunisia:21,turkei:21,turn:[2,16,22,25],tutori:7,twist:23,two:[1,2,5,10,16,23,25,26],twodiamond:19,twosplash:19,type:[2,6,23],typic:[2,18],ubuntu:25,uci:[19,26],ukrain:21,ult05:[18,26],ultrametr:[2,12],ultsch:26,unadjust:[1,10],unbal:19,under:[7,20],underli:1,undirect:15,unfortun:16,union:4,uniqu:[2,16,20,23,24],unit:[8,21],unless:[2,25],unlik:5,updat:[4,8,22],url:26,usabl:[2,7,12],use:[2,4,7,11,12,24,25],used:[1,2,3,6,10,12,14,15,16,18,21,24,25],useful:[6,18,20],usefulness:18,user:[2,16,20,23,26],userid:23,userwarn:22,uses:[3,14,25],using:[2,12,15,26],usual:2,v11:26,valid:[1,10,12,18,21,24,26],valu:[1,2,3,4,6,16,22],vari:22,variabilita:[3,14],variabl:[2,12,15,18],varianc:[2,17,19,22,25],variant:[1,10,16,25],variou:[5,18],veb10:[19,26],vector:[1,2,3,4,5,6,10,12,14,18],verbos:[2,11,12,15,21],veri:[2,6,7,11,12,15,24,25],version:[1,2,7,8,10,12,16,17,18,19,23,25,26],versu:[1,10],vertex:[2,12],vertic:15,via:[7,8],vietnam:21,vinh10a:26,vinh:[1,10,26],violat:[2,12],visibl:25,visual:[2,12,15,26],voronoi:16,wai:[2,5,18,20,23],wait:23,wallac:23,wanda:23,want:12,war:23,ward:[7,18,19,22,25],warn:[2,22],wdbc:19,weav:[16,21],websit:[22,23],weight:[2,12,15],welcom:7,well:[2,5,15,16,18],wellb:21,wellbalancedsocieti:21,were:[17,19,20,23,25],what:[2,7,20],whatev:20,when:[2,20],whenev:1,where:[1,2,3,4,5,6,10,12,14,15,17,23],wherea:16,wherev:19,whether:[2,11,12,15],which:[1,2,8,10,12,15,16,17,18,20,23,25],which_clust:23,whichev:4,white:21,whole:[2,7,12,23],whose:[2,4,6,12],wide:23,wiki:4,wikipedia:4,window:19,wine:19,wingnut:19,wise:19,within:[7,18],won:23,word:16,work:[2,6],workhors:21,workshop:26,worms_2:[19,25],worms_64:[17,19,25],wors:[17,25],worth:[2,12,16,18],would:[16,23],wrapper:[1,8],wrong:23,wspace:22,wut:[17,19],www:[21,26],x86_64:25,x_1:[3,4,14],x_aniso:22,x_i:[3,4,14],x_j:[3,4,14],x_k:4,x_n:[3,14],x_oecd:21,xlim:22,xnn:26,xperienc:26,xtick:22,y_pred:[10,12,21,22],y_test:12,y_true:10,yeast:19,yellow:23,yemen:21,yet:21,yield:[2,3,14,17,23],ylim:[5,22],you:[4,5,12,15],young:23,your:15,ython:26,ytick:22,zealand:21,zenodo:26,zero:23,zhang:[2,11,26],zhong:26,zigzag:19,zigzag_noisi:19,zigzag_outli:19,zimbabw:21,zimek:[2,12,15,26]},titles:["Python Package <cite>genieclust</cite> Reference","genieclust.compare_partitions","genieclust.Genie","genieclust.inequity","genieclust.internal","genieclust.plots","genieclust.tools","<cite>genieclust</cite>: Fast and Robust Hierarchical Clustering with Noise Point Detection","What\u2019s New in <em>genieclust</em>","R Package <em>genieclust</em> Reference","comparing_partitions: Pairwise Partition Similarity Scores","emst_mlpack: Euclidean Minimum Spanning Tree","gclust: The Genie++ Hierarchical Clustering Algorithm","genieclust-package: The Genie++ Hierarchical Clustering Algorithm (with Extras)","inequity: Inequity (Inequality) Measures","mst: Minimum Spanning Tree of the Pairwise Distance Graph","Basics","Benchmarks \u2014 Approximate Method","Benchmarks (How Good Is It?)","Benchmarks \u2014 Detailed Results","Clustering with Noise Points Detection","R Interface Examples","Comparing Algorithms on Toy Datasets","Example: Sparse Data and Movie Recommendation","Example: String Data and Grouping of DNA","Timings (How Fast Is It?)","References"],titleterms:{"1a2":8,"2018":8,"2020":8,"2021":8,"break":16,"function":25,"new":8,Ice:16,The:[12,13],algorithm:[12,13,22],also:[12,15,26],ami:19,approxim:17,argument:[10,11,12,14,15],author:13,basic:16,benchmark:[17,18,19],cluster:[7,12,13,20],compar:22,compare_partit:1,comparing_partit:10,comparis:20,comparison:16,data:[23,24],dataset:[18,19,22,25],dendrogram:16,descript:[10,11,12,13,14,15],detail:[10,12,14,15,19],detect:[7,20],distanc:15,dna:24,emst_mlpack:11,euclidean:11,exampl:[10,12,14,15,21,23,24],extra:13,factor:20,fast:[7,25],further:16,gclust:12,geni:[2,12,13],genieclust:[0,1,2,3,4,5,6,7,8,9,13],good:18,graph:15,group:24,hdbscan:[16,20],hierarch:[7,12,13],how:[18,25],indic:7,inequ:[3,14],interfac:21,intern:4,larg:[18,19,25],mean:16,measur:14,method:17,minimum:[11,15],movi:23,mst:15,nacc:19,nmi:19,nois:[7,20],number:25,packag:[0,9,13],pairwis:[10,15],partit:10,plot:5,point:[7,20],psi:19,python:0,read:16,recommend:23,refer:[0,9,10,11,12,14,15,26],result:19,robust:7,score:10,see:[12,15,26],similar:10,small:[18,19],smooth:20,span:[11,15],spars:23,string:24,summari:[18,19,25],tabl:7,thread:25,time:25,toi:22,tool:6,tree:[11,15],usag:[10,11,12,14,15],valu:[10,11,12,14,15],what:8}})
\ No newline at end of file
diff --git a/docs/weave/basics.html b/docs/weave/basics.html
index bdab5f52..791c8463 100644
--- a/docs/weave/basics.html
+++ b/docs/weave/basics.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Basics &mdash; genieclust 0.9.6 documentation</title>
+  <title>Basics &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -113,6 +113,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/weave/benchmarks_approx.html b/docs/weave/benchmarks_approx.html
index ce57164b..8b4d0d1e 100644
--- a/docs/weave/benchmarks_approx.html
+++ b/docs/weave/benchmarks_approx.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Benchmarks — Approximate Method &mdash; genieclust 0.9.6 documentation</title>
+  <title>Benchmarks — Approximate Method &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -106,6 +106,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/weave/benchmarks_ar.html b/docs/weave/benchmarks_ar.html
index 4bb1cbfe..1e24b755 100644
--- a/docs/weave/benchmarks_ar.html
+++ b/docs/weave/benchmarks_ar.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Benchmarks (How Good Is It?) &mdash; genieclust 0.9.6 documentation</title>
+  <title>Benchmarks (How Good Is It?) &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -111,6 +111,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/weave/benchmarks_details.html b/docs/weave/benchmarks_details.html
index 9a693719..7357c61a 100644
--- a/docs/weave/benchmarks_details.html
+++ b/docs/weave/benchmarks_details.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Benchmarks — Detailed Results &mdash; genieclust 0.9.6 documentation</title>
+  <title>Benchmarks — Detailed Results &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -42,7 +42,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="Benchmarks — Approximate Method" href="benchmarks_approx.html" />
-    <link rel="prev" title="mst: Minimum Spanning Tree of the Pairwise Distance Graph" href="../rapi/mst.html" /> 
+    <link rel="prev" title="What’s New in genieclust" href="../news.html" /> 
 </head>
 
 <body class="wy-body-for-nav">
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -106,6 +106,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
@@ -204,7 +205,7 @@
         <a href="benchmarks_approx.html" class="btn btn-neutral float-right" title="Benchmarks — Approximate Method" accesskey="n">Next <span class="fa fa-arrow-circle-right"></span></a>
       
       
-        <a href="../rapi/mst.html" class="btn btn-neutral float-left" title="mst: Minimum Spanning Tree of the Pairwise Distance Graph" accesskey="p"><span class="fa fa-arrow-circle-left"></span> Previous</a>
+        <a href="../news.html" class="btn btn-neutral float-left" title="What’s New in genieclust" accesskey="p"><span class="fa fa-arrow-circle-left"></span> Previous</a>
       
   </div>
   
@@ -10822,7 +10823,7 @@ <h3>Summary<a class="headerlink" href="#id12" title="Permalink to this headline"
         <a href="benchmarks_approx.html" class="btn btn-neutral float-right" title="Benchmarks — Approximate Method" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a>
       
       
-        <a href="../rapi/mst.html" class="btn btn-neutral float-left" title="mst: Minimum Spanning Tree of the Pairwise Distance Graph" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
+        <a href="../news.html" class="btn btn-neutral float-left" title="What’s New in genieclust" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a>
       
     </div>
   
diff --git a/docs/weave/noise.html b/docs/weave/noise.html
index 254daded..f2195a7d 100644
--- a/docs/weave/noise.html
+++ b/docs/weave/noise.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Clustering with Noise Points Detection &mdash; genieclust 0.9.6 documentation</title>
+  <title>Clustering with Noise Points Detection &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -110,6 +110,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/weave/r.html b/docs/weave/r.html
index 2794837d..09fbf313 100644
--- a/docs/weave/r.html
+++ b/docs/weave/r.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>R Interface Examples &mdash; genieclust 0.9.6 documentation</title>
+  <title>R Interface Examples &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -106,6 +106,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/weave/sklearn_toy_example.html b/docs/weave/sklearn_toy_example.html
index 98e3f692..a3dde637 100644
--- a/docs/weave/sklearn_toy_example.html
+++ b/docs/weave/sklearn_toy_example.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Comparing Algorithms on Toy Datasets &mdash; genieclust 0.9.6 documentation</title>
+  <title>Comparing Algorithms on Toy Datasets &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -106,6 +106,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/weave/sparse.html b/docs/weave/sparse.html
index f9215834..d379cd57 100644
--- a/docs/weave/sparse.html
+++ b/docs/weave/sparse.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Example: Sparse Data and Movie Recommendation &mdash; genieclust 0.9.6 documentation</title>
+  <title>Example: Sparse Data and Movie Recommendation &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -106,6 +106,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/weave/string.html b/docs/weave/string.html
index 7718c6a7..5bea34b8 100644
--- a/docs/weave/string.html
+++ b/docs/weave/string.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Example: String Data and Grouping of DNA &mdash; genieclust 0.9.6 documentation</title>
+  <title>Example: String Data and Grouping of DNA &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -106,6 +106,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/weave/timings.html b/docs/weave/timings.html
index 05ea245d..9cab512e 100644
--- a/docs/weave/timings.html
+++ b/docs/weave/timings.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>Timings (How Fast Is It?) &mdash; genieclust 0.9.6 documentation</title>
+  <title>Timings (How Fast Is It?) &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -66,7 +66,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -112,6 +112,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/docs/z_bibliography.html b/docs/z_bibliography.html
index 5f658d43..adeb7484 100644
--- a/docs/z_bibliography.html
+++ b/docs/z_bibliography.html
@@ -7,7 +7,7 @@
   
   <meta name="viewport" content="width=device-width, initial-scale=1.0">
   
-  <title>References &mdash; genieclust 0.9.6 documentation</title>
+  <title>References &mdash; genieclust 0.9.8 documentation</title>
   
 
   
@@ -65,7 +65,7 @@
             
             
               <div class="version">
-                0.9.6
+                0.9.8
               </div>
             
           
@@ -105,6 +105,7 @@
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="genieclust.html">Python Package <cite>genieclust</cite> Reference</a></li>
 <li class="toctree-l1"><a class="reference internal" href="rapi.html">R Package <em>genieclust</em> Reference</a></li>
+<li class="toctree-l1"><a class="reference internal" href="news.html">What’s New in <em>genieclust</em></a></li>
 </ul>
 <p class="caption"><span class="caption-text">External Links</span></p>
 <ul>
diff --git a/genieclust/__init__.py b/genieclust/__init__.py
index 245c1bd8..ad0d554d 100644
--- a/genieclust/__init__.py
+++ b/genieclust/__init__.py
@@ -5,7 +5,7 @@
 
 # ############################################################################ #
 #                                                                              #
-#   Copyleft (C) 2020, Marek Gagolewski <https://www.gagolewski.com>           #
+#   Copyleft (C) 2020-2021, Marek Gagolewski <https://www.gagolewski.com>      #
 #                                                                              #
 #                                                                              #
 #   This program is free software: you can redistribute it and/or modify       #
@@ -28,4 +28,4 @@
 from . import internal
 from .genie import Genie, GIc
 
-__version__ = '0.9.8.dev0'  # see also ../setup.py; e.g., '0.9.6.dev0'
+__version__ = '0.9.8'  # see also ../setup.py; e.g., '0.9.6.dev0'
diff --git a/setup.py b/setup.py
index 16487be8..3a03c061 100644
--- a/setup.py
+++ b/setup.py
@@ -135,7 +135,7 @@ def build_extensions(self):
 
 setuptools.setup(
     name="genieclust",
-    version="0.9.8.dev0",  # see also genieclust/__init__.py; e.g., 0.9.4.dev0
+    version="0.9.8",  # see also genieclust/__init__.py; e.g., 0.9.4.dev0
     description="The Genie++ Hierarchical Clustering Algorithm (with Extras)",
     long_description=long_description,
     long_description_content_type="text/x-rst",
diff --git a/src/RcppExports.cpp b/src/RcppExports.cpp
index 8bda704e..1e463d90 100644
--- a/src/RcppExports.cpp
+++ b/src/RcppExports.cpp
@@ -115,71 +115,71 @@ BEGIN_RCPP
     return rcpp_result_gen;
 END_RCPP
 }
-// __emst_mlpack
-Rcpp::NumericMatrix __emst_mlpack(Rcpp::NumericMatrix X);
-RcppExport SEXP _genieclust___emst_mlpack(SEXP XSEXP) {
+// dot_emst_mlpack
+Rcpp::NumericMatrix dot_emst_mlpack(Rcpp::NumericMatrix X);
+RcppExport SEXP _genieclust_dot_emst_mlpack(SEXP XSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
     Rcpp::RNGScope rcpp_rngScope_gen;
     Rcpp::traits::input_parameter< Rcpp::NumericMatrix >::type X(XSEXP);
-    rcpp_result_gen = Rcpp::wrap(__emst_mlpack(X));
+    rcpp_result_gen = Rcpp::wrap(dot_emst_mlpack(X));
     return rcpp_result_gen;
 END_RCPP
 }
-// __gclust
-List __gclust(NumericMatrix mst, double gini_threshold, bool verbose);
-RcppExport SEXP _genieclust___gclust(SEXP mstSEXP, SEXP gini_thresholdSEXP, SEXP verboseSEXP) {
+// dot_mst_default
+NumericMatrix dot_mst_default(NumericMatrix X, String distance, int M, bool cast_float32, bool verbose);
+RcppExport SEXP _genieclust_dot_mst_default(SEXP XSEXP, SEXP distanceSEXP, SEXP MSEXP, SEXP cast_float32SEXP, SEXP verboseSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
     Rcpp::RNGScope rcpp_rngScope_gen;
-    Rcpp::traits::input_parameter< NumericMatrix >::type mst(mstSEXP);
-    Rcpp::traits::input_parameter< double >::type gini_threshold(gini_thresholdSEXP);
+    Rcpp::traits::input_parameter< NumericMatrix >::type X(XSEXP);
+    Rcpp::traits::input_parameter< String >::type distance(distanceSEXP);
+    Rcpp::traits::input_parameter< int >::type M(MSEXP);
+    Rcpp::traits::input_parameter< bool >::type cast_float32(cast_float32SEXP);
     Rcpp::traits::input_parameter< bool >::type verbose(verboseSEXP);
-    rcpp_result_gen = Rcpp::wrap(__gclust(mst, gini_threshold, verbose));
+    rcpp_result_gen = Rcpp::wrap(dot_mst_default(X, distance, M, cast_float32, verbose));
     return rcpp_result_gen;
 END_RCPP
 }
-// __genie
-IntegerVector __genie(NumericMatrix mst, int k, double gini_threshold, String postprocess, bool detect_noise, bool verbose);
-RcppExport SEXP _genieclust___genie(SEXP mstSEXP, SEXP kSEXP, SEXP gini_thresholdSEXP, SEXP postprocessSEXP, SEXP detect_noiseSEXP, SEXP verboseSEXP) {
+// dot_mst_dist
+NumericMatrix dot_mst_dist(NumericVector d, int M, bool verbose);
+RcppExport SEXP _genieclust_dot_mst_dist(SEXP dSEXP, SEXP MSEXP, SEXP verboseSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
     Rcpp::RNGScope rcpp_rngScope_gen;
-    Rcpp::traits::input_parameter< NumericMatrix >::type mst(mstSEXP);
-    Rcpp::traits::input_parameter< int >::type k(kSEXP);
-    Rcpp::traits::input_parameter< double >::type gini_threshold(gini_thresholdSEXP);
-    Rcpp::traits::input_parameter< String >::type postprocess(postprocessSEXP);
-    Rcpp::traits::input_parameter< bool >::type detect_noise(detect_noiseSEXP);
+    Rcpp::traits::input_parameter< NumericVector >::type d(dSEXP);
+    Rcpp::traits::input_parameter< int >::type M(MSEXP);
     Rcpp::traits::input_parameter< bool >::type verbose(verboseSEXP);
-    rcpp_result_gen = Rcpp::wrap(__genie(mst, k, gini_threshold, postprocess, detect_noise, verbose));
+    rcpp_result_gen = Rcpp::wrap(dot_mst_dist(d, M, verbose));
     return rcpp_result_gen;
 END_RCPP
 }
-// mst_default
-NumericMatrix mst_default(NumericMatrix X, String distance, int M, bool cast_float32, bool verbose);
-RcppExport SEXP _genieclust_mst_default(SEXP XSEXP, SEXP distanceSEXP, SEXP MSEXP, SEXP cast_float32SEXP, SEXP verboseSEXP) {
+// dot_genie
+IntegerVector dot_genie(NumericMatrix mst, int k, double gini_threshold, String postprocess, bool detect_noise, bool verbose);
+RcppExport SEXP _genieclust_dot_genie(SEXP mstSEXP, SEXP kSEXP, SEXP gini_thresholdSEXP, SEXP postprocessSEXP, SEXP detect_noiseSEXP, SEXP verboseSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
     Rcpp::RNGScope rcpp_rngScope_gen;
-    Rcpp::traits::input_parameter< NumericMatrix >::type X(XSEXP);
-    Rcpp::traits::input_parameter< String >::type distance(distanceSEXP);
-    Rcpp::traits::input_parameter< int >::type M(MSEXP);
-    Rcpp::traits::input_parameter< bool >::type cast_float32(cast_float32SEXP);
+    Rcpp::traits::input_parameter< NumericMatrix >::type mst(mstSEXP);
+    Rcpp::traits::input_parameter< int >::type k(kSEXP);
+    Rcpp::traits::input_parameter< double >::type gini_threshold(gini_thresholdSEXP);
+    Rcpp::traits::input_parameter< String >::type postprocess(postprocessSEXP);
+    Rcpp::traits::input_parameter< bool >::type detect_noise(detect_noiseSEXP);
     Rcpp::traits::input_parameter< bool >::type verbose(verboseSEXP);
-    rcpp_result_gen = Rcpp::wrap(mst_default(X, distance, M, cast_float32, verbose));
+    rcpp_result_gen = Rcpp::wrap(dot_genie(mst, k, gini_threshold, postprocess, detect_noise, verbose));
     return rcpp_result_gen;
 END_RCPP
 }
-// mst_dist
-NumericMatrix mst_dist(NumericVector d, int M, bool verbose);
-RcppExport SEXP _genieclust_mst_dist(SEXP dSEXP, SEXP MSEXP, SEXP verboseSEXP) {
+// dot_gclust
+List dot_gclust(NumericMatrix mst, double gini_threshold, bool verbose);
+RcppExport SEXP _genieclust_dot_gclust(SEXP mstSEXP, SEXP gini_thresholdSEXP, SEXP verboseSEXP) {
 BEGIN_RCPP
     Rcpp::RObject rcpp_result_gen;
     Rcpp::RNGScope rcpp_rngScope_gen;
-    Rcpp::traits::input_parameter< NumericVector >::type d(dSEXP);
-    Rcpp::traits::input_parameter< int >::type M(MSEXP);
+    Rcpp::traits::input_parameter< NumericMatrix >::type mst(mstSEXP);
+    Rcpp::traits::input_parameter< double >::type gini_threshold(gini_thresholdSEXP);
     Rcpp::traits::input_parameter< bool >::type verbose(verboseSEXP);
-    rcpp_result_gen = Rcpp::wrap(mst_dist(d, M, verbose));
+    rcpp_result_gen = Rcpp::wrap(dot_gclust(mst, gini_threshold, verbose));
     return rcpp_result_gen;
 END_RCPP
 }
@@ -216,11 +216,11 @@ static const R_CallMethodDef CallEntries[] = {
     {"_genieclust_adjusted_mi_score", (DL_FUNC) &_genieclust_adjusted_mi_score, 2},
     {"_genieclust_normalized_accuracy", (DL_FUNC) &_genieclust_normalized_accuracy, 2},
     {"_genieclust_pair_sets_index", (DL_FUNC) &_genieclust_pair_sets_index, 2},
-    {"_genieclust___emst_mlpack", (DL_FUNC) &_genieclust___emst_mlpack, 1},
-    {"_genieclust___gclust", (DL_FUNC) &_genieclust___gclust, 3},
-    {"_genieclust___genie", (DL_FUNC) &_genieclust___genie, 6},
-    {"_genieclust_mst_default", (DL_FUNC) &_genieclust_mst_default, 5},
-    {"_genieclust_mst_dist", (DL_FUNC) &_genieclust_mst_dist, 3},
+    {"_genieclust_dot_emst_mlpack", (DL_FUNC) &_genieclust_dot_emst_mlpack, 1},
+    {"_genieclust_dot_mst_default", (DL_FUNC) &_genieclust_dot_mst_default, 5},
+    {"_genieclust_dot_mst_dist", (DL_FUNC) &_genieclust_dot_mst_dist, 3},
+    {"_genieclust_dot_genie", (DL_FUNC) &_genieclust_dot_genie, 6},
+    {"_genieclust_dot_gclust", (DL_FUNC) &_genieclust_dot_gclust, 3},
     {"_genieclust_gini_index", (DL_FUNC) &_genieclust_gini_index, 1},
     {"_genieclust_bonferroni_index", (DL_FUNC) &_genieclust_bonferroni_index, 1},
     {NULL, NULL, 0}
diff --git a/src/r_compare_partitions.cpp b/src/r_compare_partitions.cpp
index 0efab95f..339db13f 100644
--- a/src/r_compare_partitions.cpp
+++ b/src/r_compare_partitions.cpp
@@ -31,7 +31,7 @@ using namespace Rcpp;
  *  @return flat, contiguous c_style vector representing the contingency table
  *   with xc rows and yc columns
  */
-std::vector<int> __get_contingency_matrix(RObject x, RObject y,
+std::vector<int> get_contingency_matrix(RObject x, RObject y,
                                           ssize_t* xc, ssize_t* yc)
 {
     if (Rf_isMatrix(x)) {
@@ -58,29 +58,29 @@ std::vector<int> __get_contingency_matrix(RObject x, RObject y,
         if (!(Rf_isInteger(x) | Rf_isReal(x) | Rf_isLogical(x) | Rf_isFactor(x)))
             stop("y must be of type numeric");
 
-        IntegerVector _x(x);
-        IntegerVector _y(y);
+        IntegerVector rx(x);
+        IntegerVector ry(y);
 
-        ssize_t n = _x.size();
-        if (_y.size() != n)
+        ssize_t n = rx.size();
+        if (ry.size() != n)
             stop("x and y must be of equal lengths");
 
         for (ssize_t i=0; i<n; ++i) {
-            if (_x[i] == NA_INTEGER || _y[i] == NA_INTEGER)
+            if (rx[i] == NA_INTEGER || ry[i] == NA_INTEGER)
                 stop("missing values not allowed");
         }
 
         int xmin, xmax;
-        Cminmax(INTEGER(SEXP(_x)), n, &xmin, &xmax);
+        Cminmax(INTEGER(SEXP(rx)), n, &xmin, &xmax);
         *xc = (xmax-xmin+1);
 
         int ymin, ymax;
-        Cminmax(INTEGER(SEXP(_y)), n, &ymin, &ymax);
+        Cminmax(INTEGER(SEXP(ry)), n, &ymin, &ymax);
         *yc = (ymax-ymin+1);
 
         std::vector<int> C((*xc)*(*yc));
         Ccontingency_table(C.data(), *xc, *yc,
-            xmin, ymin, INTEGER(SEXP(_x)), INTEGER(SEXP(_y)), n);
+            xmin, ymin, INTEGER(SEXP(rx)), INTEGER(SEXP(ry)), n);
         return C;
     }
 }
@@ -188,7 +188,7 @@ double adjusted_rand_score(RObject x, RObject y=R_NilValue)
 {
     ssize_t xc, yc;
     std::vector<int> C(
-        __get_contingency_matrix(x, y, &xc, &yc)
+        get_contingency_matrix(x, y, &xc, &yc)
     );
 
     return Ccompare_partitions_pairs(C.data(), xc, yc).ar;
@@ -202,7 +202,7 @@ double rand_score(RObject x, RObject y=R_NilValue)
 {
     ssize_t xc, yc;
     std::vector<int> C(
-        __get_contingency_matrix(x, y, &xc, &yc)
+        get_contingency_matrix(x, y, &xc, &yc)
     );
 
     return Ccompare_partitions_pairs(C.data(), xc, yc).r;
@@ -216,7 +216,7 @@ double adjusted_fm_score(RObject x, RObject y=R_NilValue)
 {
     ssize_t xc, yc;
     std::vector<int> C(
-        __get_contingency_matrix(x, y, &xc, &yc)
+        get_contingency_matrix(x, y, &xc, &yc)
     );
 
     return Ccompare_partitions_pairs(C.data(), xc, yc).afm;
@@ -230,7 +230,7 @@ double fm_score(RObject x, RObject y=R_NilValue)
 {
     ssize_t xc, yc;
     std::vector<int> C(
-        __get_contingency_matrix(x, y, &xc, &yc)
+        get_contingency_matrix(x, y, &xc, &yc)
     );
 
     return Ccompare_partitions_pairs(C.data(), xc, yc).fm;
@@ -244,7 +244,7 @@ double mi_score(RObject x, RObject y=R_NilValue)
 {
     ssize_t xc, yc;
     std::vector<int> C(
-        __get_contingency_matrix(x, y, &xc, &yc)
+        get_contingency_matrix(x, y, &xc, &yc)
     );
 
     return Ccompare_partitions_info(C.data(), xc, yc).mi;
@@ -259,7 +259,7 @@ double normalized_mi_score(RObject x, RObject y=R_NilValue)
 {
     ssize_t xc, yc;
     std::vector<int> C(
-        __get_contingency_matrix(x, y, &xc, &yc)
+        get_contingency_matrix(x, y, &xc, &yc)
     );
 
     return Ccompare_partitions_info(C.data(), xc, yc).nmi;
@@ -274,7 +274,7 @@ double adjusted_mi_score(RObject x, RObject y=R_NilValue)
 {
     ssize_t xc, yc;
     std::vector<int> C(
-        __get_contingency_matrix(x, y, &xc, &yc)
+        get_contingency_matrix(x, y, &xc, &yc)
     );
 
     return Ccompare_partitions_info(C.data(), xc, yc).ami;
@@ -289,7 +289,7 @@ double normalized_accuracy(RObject x, RObject y=R_NilValue)
 {
     ssize_t xc, yc;
     std::vector<int> C(
-        __get_contingency_matrix(x, y, &xc, &yc)
+        get_contingency_matrix(x, y, &xc, &yc)
     );
 
     return Ccompare_partitions_nacc(C.data(), xc, yc);
@@ -303,7 +303,7 @@ double pair_sets_index(RObject x, RObject y=R_NilValue)
 {
     ssize_t xc, yc;
     std::vector<int> C(
-        __get_contingency_matrix(x, y, &xc, &yc)
+        get_contingency_matrix(x, y, &xc, &yc)
     );
 
     return Ccompare_partitions_psi(C.data(), xc, yc);
diff --git a/src/r_emst.cpp b/src/r_emst.cpp
index 6922c73a..efb75b2c 100644
--- a/src/r_emst.cpp
+++ b/src/r_emst.cpp
@@ -23,25 +23,25 @@
 // Euclidean MST via MLPACK
 // Calls RcppMLPACK::DualTreeBoruvka::ComputeMST
 // [[Rcpp::export(".emst_mlpack")]]
-Rcpp::NumericMatrix __emst_mlpack(Rcpp::NumericMatrix X)
+Rcpp::NumericMatrix dot_emst_mlpack(Rcpp::NumericMatrix X)
 {
     ssize_t n = X.nrow();
     ssize_t d = X.ncol();
 
-    // Let _X = transpose(X)
-    arma::Mat<double> _X(d, n);
+    // Let aX = transpose(X)
+    arma::Mat<double> aX(d, n);
     for (ssize_t i=0; i<n; ++i)
         for (ssize_t j=0; j<d; ++j)
-            _X(j, i) = X(i, j);
+            aX(j, i) = X(i, j);
 
-    arma::Mat<double> _ret;
-    mlpack::emst::DualTreeBoruvka<>(_X).ComputeMST(_ret);
+    arma::Mat<double> aret;
+    mlpack::emst::DualTreeBoruvka<>(aX).ComputeMST(aret);
 
     Rcpp::NumericMatrix ret(n-1, 3);
     for (ssize_t i=0; i<n-1; ++i) {
-        ret(i, 0) = _ret(0, i)+1; // lesser edge index (0-based -> 1-based)
-        ret(i, 1) = _ret(1, i)+1; // greater edge index
-        ret(i, 2) = _ret(2, i);   // distance between the pair of points
+        ret(i, 0) = aret(0, i)+1; // lesser edge index (0-based -> 1-based)
+        ret(i, 1) = aret(1, i)+1; // greater edge index
+        ret(i, 2) = aret(2, i);   // distance between the pair of points
         GENIECLUST_ASSERT(ret(i, 0) < ret(i, 1));
         GENIECLUST_ASSERT(i == 0 || ret(i-1, 2) <= ret(i, 2));
     }
diff --git a/src/r_gclust.cpp b/src/r_gclust.cpp
index 0d45d365..9d16d06a 100644
--- a/src/r_gclust.cpp
+++ b/src/r_gclust.cpp
@@ -28,7 +28,7 @@ using namespace Rcpp;
 
 
 /* This function was originally part of our `genie` package for R */
-void __generate_merge(ssize_t n, NumericMatrix links, NumericMatrix merge)
+void internal_generate_merge(ssize_t n, NumericMatrix links, NumericMatrix merge)
 {
     std::vector<ssize_t> elements(n+1, 0);
     std::vector<ssize_t> parents(n+1, 0);
@@ -79,7 +79,7 @@ void __generate_merge(ssize_t n, NumericMatrix links, NumericMatrix merge)
 
 
 /* Originally, this function was part of our `genie` package for R */
-void __generate_order(ssize_t n, NumericMatrix merge, NumericVector order)
+void internal_generate_order(ssize_t n, NumericMatrix merge, NumericVector order)
 {
    std::vector< std::list<double> > relord(n+1);
    ssize_t clusterNumber = 1;
@@ -106,161 +106,8 @@ void __generate_order(ssize_t n, NumericMatrix merge, NumericVector order)
 }
 
 
-
-// [[Rcpp::export(".gclust")]]
-List __gclust(
-        NumericMatrix mst,
-        double gini_threshold,
-        bool verbose)
-{
-    if (verbose) GENIECLUST_PRINT("[genieclust] Determining clusters.\n");
-
-    if (gini_threshold < 0.0 || gini_threshold > 1.0)
-        stop("`gini_threshold` must be in [0, 1]");
-
-    ssize_t n = mst.nrow()+1;
-    matrix<ssize_t> mst_i(n-1, 2);
-    std::vector<double>  mst_d(n-1);
-
-    for (ssize_t i=0; i<n-1; ++i) {
-        mst_i(i, 0) = (ssize_t)mst(i, 0)-1; // 1-based to 0-based indices
-        mst_i(i, 1) = (ssize_t)mst(i, 1)-1; // 1-based to 0-based indices
-        mst_d[i] = mst(i, 2);
-    }
-
-    CGenie<double> g(mst_d.data(), mst_i.data(), n/*, noise_leaves=M>1*/);
-    g.apply_genie(1, gini_threshold);
-
-
-    if (verbose) GENIECLUST_PRINT("[genieclust] Postprocessing the outputs.\n");
-
-    std::vector<ssize_t> links(n-1);
-    g.get_links(links.data());
-
-
-
-    NumericMatrix links2(n-1, 2);
-    NumericVector height(n-1, NA_REAL);
-    ssize_t k = 0;
-    for (ssize_t i=0; i<n-1; ++i) {
-        if (links[i] >= 0) {
-            links2(k, 0) = mst_i(links[i], 0) + 1;
-            links2(k, 1) = mst_i(links[i], 1) + 1;
-            height(k) = mst_d[ links[i] ];
-            ++k;
-        }
-    }
-    for (; k<n-1; ++k) {
-        links2(k, 0) = links2(k, 1) = NA_REAL;
-    }
-
-
-    NumericMatrix merge(n-1, 2);
-    __generate_merge(n, links2, merge);
-
-    NumericVector order(n, NA_REAL);
-    __generate_order(n, merge, order);
-
-    if (verbose) GENIECLUST_PRINT("[genieclust] Done.\n");
-
-    return List::create(
-        _["merge"]  = merge,
-        _["height"] = height,
-        _["order"]  = order
-    );
-}
-
-
-
-
-
-// [[Rcpp::export(".genie")]]
-IntegerVector __genie(
-        NumericMatrix mst,
-        int k,
-        double gini_threshold,
-        String postprocess,
-        bool detect_noise,
-        bool verbose)
-{
-    if (verbose) GENIECLUST_PRINT("[genieclust] Determining clusters.\n");
-
-    if (gini_threshold < 0.0 || gini_threshold > 1.0)
-        stop("`gini_threshold` must be in [0, 1]");
-
-    if (postprocess == "boundary" && detect_noise && Rf_isNull(mst.attr("nn")))
-        stop("`nn` attribute of the MST not set; unable to proceed with this postprocessing action");
-
-    ssize_t n = mst.nrow()+1;
-
-    if (k < 1 || k > n) stop("invalid requested number of clusters, `k`");
-
-    matrix<ssize_t> mst_i(n-1, 2);
-    std::vector<double>  mst_d(n-1);
-
-    for (ssize_t i=0; i<n-1; ++i) {
-        mst_i(i, 0) = (ssize_t)mst(i, 0)-1; // 1-based to 0-based indices
-        mst_i(i, 1) = (ssize_t)mst(i, 1)-1; // 1-based to 0-based indices
-        mst_d[i] = mst(i, 2);
-    }
-
-    CGenie<double> g(mst_d.data(), mst_i.data(), n, detect_noise);
-    g.apply_genie(k, gini_threshold);
-
-
-
-
-    if (verbose) GENIECLUST_PRINT("[genieclust] Postprocessing the outputs.\n");
-
-    std::vector<ssize_t> __res(n);
-    ssize_t k_detected = g.get_labels(k, __res.data());
-
-    if (k_detected != k)
-        Rf_warning("Number of clusters detected is different than the requested one due to the presence of noise points.");
-
-    if (detect_noise && postprocess == "boundary") {
-        NumericMatrix nn_r = mst.attr("nn");
-        GENIECLUST_ASSERT(nn_r.nrow() == n);
-        ssize_t M = nn_r.ncol()+1;
-        GENIECLUST_ASSERT(M < n);
-        matrix<ssize_t> nn_i(n, M-1);
-        for (ssize_t i=0; i<n; ++i) {
-            for (ssize_t j=0; j<M-1; ++j) {
-                GENIECLUST_ASSERT(nn_r(i,j) >= 1);
-                GENIECLUST_ASSERT(nn_r(i,j) <= n);
-                nn_i(i,j) = (ssize_t)nn_r(i,j)-1; // 0-based indexing
-            }
-        }
-
-        Cmerge_boundary_points(mst_i.data(), n-1, nn_i.data(),
-                               M-1, M, __res.data(), n);
-    }
-    else if (detect_noise && postprocess == "all") {
-        Cmerge_noise_points(mst_i.data(), n-1, __res.data(), n);
-    }
-
-    IntegerVector res(n);
-    for (ssize_t i=0; i<n; ++i) {
-        if (__res[i] < 0) res[i] = NA_INTEGER; // noise point
-        else res[i] = __res[i] + 1;
-    }
-
-    if (verbose) GENIECLUST_PRINT("[genieclust] Done.\n");
-
-    return res;
-}
-
-
-
-
-
-
-
-
-
-
 template<typename T>
-NumericMatrix __compute_mst(CDistance<T>* D, ssize_t n, ssize_t M, bool verbose)
+NumericMatrix internal_compute_mst(CDistance<T>* D, ssize_t n, ssize_t M, bool verbose)
 {
     if (M < 1 || M >= n-1)
         stop("`M` must be an integer in [1, n-1)");
@@ -318,8 +165,9 @@ NumericMatrix __compute_mst(CDistance<T>* D, ssize_t n, ssize_t M, bool verbose)
 
 
 
+
 template<typename T>
-NumericMatrix __mst_default(
+NumericMatrix internal_mst_default(
     NumericMatrix X,
     String distance,
     ssize_t M,
@@ -341,7 +189,7 @@ NumericMatrix __mst_default(
     else
         stop("given `distance` is not supported (yet)");
 
-    ret = __compute_mst<T>(D, n, M, verbose);
+    ret = internal_compute_mst<T>(D, n, M, verbose);
     delete D;
 
     if (distance == "euclidean" || distance == "l2") {
@@ -359,7 +207,7 @@ NumericMatrix __mst_default(
 
 
 // [[Rcpp::export(".mst.default")]]
-NumericMatrix mst_default(
+NumericMatrix dot_mst_default(
     NumericMatrix X,
     String distance="euclidean",
     int M=1,
@@ -367,15 +215,15 @@ NumericMatrix mst_default(
     bool verbose=false)
 {
     if (cast_float32)
-        return __mst_default<float >(X, distance, M, verbose);
+        return internal_mst_default<float >(X, distance, M, verbose);
     else
-        return __mst_default<double>(X, distance, M, verbose);
+        return internal_mst_default<double>(X, distance, M, verbose);
 }
 
 
 
 // [[Rcpp::export(".mst.dist")]]
-NumericMatrix mst_dist(
+NumericMatrix dot_mst_dist(
     NumericVector d,
     int M=1,
     bool verbose=false)
@@ -385,5 +233,147 @@ NumericMatrix mst_dist(
 
     CDistancePrecomputedVector<double> D(REAL(SEXP(d)), n);
 
-    return __compute_mst<double>(&D, n, M, verbose);
+    return internal_compute_mst<double>(&D, n, M, verbose);
+}
+
+
+
+// [[Rcpp::export(".genie")]]
+IntegerVector dot_genie(
+        NumericMatrix mst,
+        int k,
+        double gini_threshold,
+        String postprocess,
+        bool detect_noise,
+        bool verbose)
+{
+    if (verbose) GENIECLUST_PRINT("[genieclust] Determining clusters.\n");
+
+    if (gini_threshold < 0.0 || gini_threshold > 1.0)
+        stop("`gini_threshold` must be in [0, 1]");
+
+    if (postprocess == "boundary" && detect_noise && Rf_isNull(mst.attr("nn")))
+        stop("`nn` attribute of the MST not set; unable to proceed with this postprocessing action");
+
+    ssize_t n = mst.nrow()+1;
+
+    if (k < 1 || k > n) stop("invalid requested number of clusters, `k`");
+
+    matrix<ssize_t> mst_i(n-1, 2);
+    std::vector<double>  mst_d(n-1);
+
+    for (ssize_t i=0; i<n-1; ++i) {
+        mst_i(i, 0) = (ssize_t)mst(i, 0)-1; // 1-based to 0-based indices
+        mst_i(i, 1) = (ssize_t)mst(i, 1)-1; // 1-based to 0-based indices
+        mst_d[i] = mst(i, 2);
+    }
+
+    CGenie<double> g(mst_d.data(), mst_i.data(), n, detect_noise);
+    g.apply_genie(k, gini_threshold);
+
+
+    if (verbose) GENIECLUST_PRINT("[genieclust] Postprocessing the outputs.\n");
+
+    std::vector<ssize_t> xres(n);
+    ssize_t k_detected = g.get_labels(k, xres.data());
+
+    if (k_detected != k)
+        Rf_warning("Number of clusters detected is different than the requested one due to the presence of noise points.");
+
+    if (detect_noise && postprocess == "boundary") {
+        NumericMatrix nn_r = mst.attr("nn");
+        GENIECLUST_ASSERT(nn_r.nrow() == n);
+        ssize_t M = nn_r.ncol()+1;
+        GENIECLUST_ASSERT(M < n);
+        matrix<ssize_t> nn_i(n, M-1);
+        for (ssize_t i=0; i<n; ++i) {
+            for (ssize_t j=0; j<M-1; ++j) {
+                GENIECLUST_ASSERT(nn_r(i,j) >= 1);
+                GENIECLUST_ASSERT(nn_r(i,j) <= n);
+                nn_i(i,j) = (ssize_t)nn_r(i,j)-1; // 0-based indexing
+            }
+        }
+
+        Cmerge_boundary_points(mst_i.data(), n-1, nn_i.data(),
+                               M-1, M, xres.data(), n);
+    }
+    else if (detect_noise && postprocess == "all") {
+        Cmerge_noise_points(mst_i.data(), n-1, xres.data(), n);
+    }
+
+    IntegerVector res(n);
+    for (ssize_t i=0; i<n; ++i) {
+        if (xres[i] < 0) res[i] = NA_INTEGER; // noise point
+        else res[i] = xres[i] + 1;
+    }
+
+    if (verbose) GENIECLUST_PRINT("[genieclust] Done.\n");
+
+    return res;
 }
+
+
+
+// [[Rcpp::export(".gclust")]]
+List dot_gclust(
+        NumericMatrix mst,
+        double gini_threshold,
+        bool verbose)
+{
+    if (verbose) GENIECLUST_PRINT("[genieclust] Determining clusters.\n");
+
+    if (gini_threshold < 0.0 || gini_threshold > 1.0)
+        stop("`gini_threshold` must be in [0, 1]");
+
+    ssize_t n = mst.nrow()+1;
+    matrix<ssize_t> mst_i(n-1, 2);
+    std::vector<double>  mst_d(n-1);
+
+    for (ssize_t i=0; i<n-1; ++i) {
+        mst_i(i, 0) = (ssize_t)mst(i, 0)-1; // 1-based to 0-based indices
+        mst_i(i, 1) = (ssize_t)mst(i, 1)-1; // 1-based to 0-based indices
+        mst_d[i] = mst(i, 2);
+    }
+
+    CGenie<double> g(mst_d.data(), mst_i.data(), n/*, noise_leaves=M>1*/);
+    g.apply_genie(1, gini_threshold);
+
+
+    if (verbose) GENIECLUST_PRINT("[genieclust] Postprocessing the outputs.\n");
+
+    std::vector<ssize_t> links(n-1);
+    g.get_links(links.data());
+
+
+
+    NumericMatrix links2(n-1, 2);
+    NumericVector height(n-1, NA_REAL);
+    ssize_t k = 0;
+    for (ssize_t i=0; i<n-1; ++i) {
+        if (links[i] >= 0) {
+            links2(k, 0) = mst_i(links[i], 0) + 1;
+            links2(k, 1) = mst_i(links[i], 1) + 1;
+            height(k) = mst_d[ links[i] ];
+            ++k;
+        }
+    }
+    for (; k<n-1; ++k) {
+        links2(k, 0) = links2(k, 1) = NA_REAL;
+    }
+
+
+    NumericMatrix merge(n-1, 2);
+    internal_generate_merge(n, links2, merge);
+
+    NumericVector order(n, NA_REAL);
+    internal_generate_order(n, merge, order);
+
+    if (verbose) GENIECLUST_PRINT("[genieclust] Done.\n");
+
+    return List::create(
+        _["merge"]  = merge,
+        _["height"] = height,
+        _["order"]  = order
+    );
+}
+