diff --git a/devel/sphinx/weave/figures/r_ssi-map-1.png b/devel/sphinx/weave/figures/r_ssi-map-1.png index 9d3e64a6..f2be121a 100644 Binary files a/devel/sphinx/weave/figures/r_ssi-map-1.png and b/devel/sphinx/weave/figures/r_ssi-map-1.png differ diff --git a/devel/sphinx/weave/figures/r_ssi-oecd-dendrogram-1.png b/devel/sphinx/weave/figures/r_ssi-oecd-dendrogram-1.png index e4c85882..11bfb244 100644 Binary files a/devel/sphinx/weave/figures/r_ssi-oecd-dendrogram-1.png and b/devel/sphinx/weave/figures/r_ssi-oecd-dendrogram-1.png differ diff --git a/devel/sphinx/weave/r.Rmd b/devel/sphinx/weave/r.Rmd index 509f96db..258af24a 100644 --- a/devel/sphinx/weave/r.Rmd +++ b/devel/sphinx/weave/r.Rmd @@ -1,7 +1,7 @@ # R Interface Examples -The R package `genieclust` is available on the -`CRAN `_ repository. +The latest stable release of the R package `genieclust` is available from the +[CRAN](https://cran.r-project.org/web/packages/genieclust/) repository. To install it, call: ```{r install, eval=FALSE} diff --git a/devel/sphinx/weave/r.md b/devel/sphinx/weave/r.md index 0265edec..0be0979a 100644 --- a/devel/sphinx/weave/r.md +++ b/devel/sphinx/weave/r.md @@ -1,7 +1,7 @@ # R Interface Examples -The R package `genieclust` is available on the -`CRAN `_ repository. +The latest stable release of the R package `genieclust` is available from the +[CRAN](https://cran.r-project.org/web/packages/genieclust/) repository. To install it, call: diff --git a/devel/sphinx/weave/r.rst b/devel/sphinx/weave/r.rst index ebb35c4f..70f9a6f6 100644 --- a/devel/sphinx/weave/r.rst +++ b/devel/sphinx/weave/r.rst @@ -1,7 +1,7 @@ R Interface Examples ==================== -The R package ``genieclust`` is available on the ``CRAN ``\ \_ repository. To install it, call: +The latest stable release of the R package ``genieclust`` is available from the `CRAN `__ repository. To install it, call: .. code:: r diff --git a/docs/_images/r_ssi-map-1.png b/docs/_images/r_ssi-map-1.png index 9d3e64a6..f2be121a 100644 Binary files a/docs/_images/r_ssi-map-1.png and b/docs/_images/r_ssi-map-1.png differ diff --git a/docs/_images/r_ssi-oecd-dendrogram-1.png b/docs/_images/r_ssi-oecd-dendrogram-1.png index e4c85882..11bfb244 100644 Binary files a/docs/_images/r_ssi-oecd-dendrogram-1.png and b/docs/_images/r_ssi-oecd-dendrogram-1.png differ diff --git a/docs/_sources/weave/r.rst.txt b/docs/_sources/weave/r.rst.txt index ebb35c4f..70f9a6f6 100644 --- a/docs/_sources/weave/r.rst.txt +++ b/docs/_sources/weave/r.rst.txt @@ -1,7 +1,7 @@ R Interface Examples ==================== -The R package ``genieclust`` is available on the ``CRAN ``\ \_ repository. To install it, call: +The latest stable release of the R package ``genieclust`` is available from the `CRAN `__ repository. To install it, call: .. code:: r diff --git a/docs/genieclust_plots-1.pdf b/docs/genieclust_plots-1.pdf index 7f0d4ce1..10cafc9c 100644 Binary files a/docs/genieclust_plots-1.pdf and b/docs/genieclust_plots-1.pdf differ diff --git a/docs/genieclust_plots-2.pdf b/docs/genieclust_plots-2.pdf index 00887d13..440efa1c 100644 Binary files a/docs/genieclust_plots-2.pdf and b/docs/genieclust_plots-2.pdf differ diff --git a/docs/genieclust_plots-3.pdf b/docs/genieclust_plots-3.pdf index 34897eed..3ede8c3a 100644 Binary files a/docs/genieclust_plots-3.pdf and b/docs/genieclust_plots-3.pdf differ diff --git a/docs/genieclust_plots-4.pdf b/docs/genieclust_plots-4.pdf index 3a1e6919..74dc7ac4 100644 Binary files a/docs/genieclust_plots-4.pdf and b/docs/genieclust_plots-4.pdf differ diff --git a/docs/searchindex.js b/docs/searchindex.js index 286ae921..8f464d58 100644 --- a/docs/searchindex.js +++ b/docs/searchindex.js @@ -1 +1 @@ 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v:11,reveal:19,review:22,rezaei:[1,9,25],rf16:[18,25],rich:[3,13,17],right:[3,21],ring:18,ring_noisi:18,ring_outli:18,rmd:23,robinhood:3,robust:[2,11],robustifi:[2,7,11,15],rocket:22,romania:20,round:[1,3,17],routin:[11,22,23,25],row:[1,2,9,14,18,20,22],run:[2,4,6,11,16,21,22,24],rushmor:22,russia:20,rworldmap:20,safe:24,sai:[2,10,20],sake:15,same:[1,4,5,9,15,17,22,24],sampl:[3,13,17,20,21],sander:[2,11,14,25],scale:[2,16,17,18,20,24],scatter:[5,15,19,21],scheme:6,schur:[3,13],scienc:[2,4,11,13,25],scikit:[7,15,17,21,24,25],scipi:[2,5,15,22],score:[1,3,7,8,11,13,15,17,18,20],script:21,search:[7,16,22,23,24],searchsort:22,seber:[3,13],sec:22,second:[4,24],secret:22,section:[15,16,17,18,24],see:[1,2,4,5,7,9,10,12,15,16,17,18,20,23,24],seed:21,seem:15,seen:16,segment:5,select:[11,14,21],self:[2,25],sens:17,separ:14,sequenc:15,seri:[1,24],set:[1,2,3,4,5,7,9,11,13,14,15,17,18,19,20,21,23,24,25],set_data_structur:4,set_param:24,setenv:14,setquerytimeparam:2,shape:[1,2,4,5,15,19],shave:22,shortest:14,should:[2,11,15,17],shouldn:15,show:[5,15,19,21,22],show_leaf_count:15,shut:22,side:15,sieranoja:25,sight:22,sigkdd:[2,10,25],sigma:[1,3],sigmoid:17,signific:17,sim:15,similar:[1,7,8,11,15,16,17,18,20,22,23],similarli:[1,9],simpl:[7,22],simplic:[2,5,7,11],singl:[2,9,11,16,17,18,21,24,25],sipu:[16,18,24],site:19,six:25,size:[2,3,4,7,11,13,14,15,21,24],sklearn:[15,21,24],sklearn_kmean:24,slightli:24,slovak:20,slovenia:20,slow:[4,14,24],slower:24,small:[1,2,6,7,11,16,22,24],smaller:[4,17,20],smallest:[2,4,6,7,11,15],smell:22,smile:18,smooth:[2,7,11,14],smp:24,societi:20,softwar:[2,10,25],solut:[1,2,9,17],solv:[7,24],som:25,some:[1,2,4,7,9,14,17,18,24],somehow:[2,7,11],someth:22,sometim:[1,2,7,9,17],somewhat:15,somewher:15,sonar:18,sort:[2,3,6,13,14,24],sort_valu:22,soup:22,sourc:[2,7,10,17,25],south:20,space:[2,10,11,14,15,16,24,25],spain:20,span:[2,5,7,8,11,17,19,24,25],spars:[2,7],spatial:[2,5,25],specif:[20,21],spectral:17,spectral_rbf_5:[17,18],speed:15,sphinx:[15,20,23],spinal:22,spiral:18,splendid:7,split:15,spoiler:16,sqrt:[2,4,24],squad:22,squar:[2,18],squareform:2,ssfindex:20,ssi:20,ssi_2016_categori:20,ssize_t:4,stabl:[2,15,17,20,25],stage:[2,18],standardis:[2,11],standardscal:21,star:22,stat:20,state:20,statist:[6,16,17,18,25],statistica:[3,13],statlog:18,std:[2,16,17,18],stderr:2,step:19,still:[19,24],sting:22,stop:21,store:[2,22,24],stori:22,str:[2,23],strang:15,strike:22,string:[2,7],stripe:18,structur:[2,24],studi:[17,24,25],style:5,subgroup:15,subject:17,submarin:22,suboptim:14,subplot:[15,19,21],subplots_adjust:21,subset:[1,4,9],subtract:15,suggest:[2,17],suit:[1,7,16,17,18,24,25],suitabl:[2,24],sum:[1,6,9],sum_:[3,4],summari:7,summaris:[1,15,18],support:[2,7,22],surpris:15,sustain:20,sweden:20,switzerland:20,symbol:15,synonym:[2,11,14],synthet:24,syst:14,system:[24,25],tabl:[1,9,22],take:[2,3,11,13,16,22,24],taken:2,tap:22,target:18,task:[2,7,14,24],tataacaaccctgattacatcaagctacgctccggtgcgttgcctcggacgagtgctaatccctccccactgactgtattcatcttgacaata:23,tech:14,temporarili:19,tend:[2,17,19],term:15,terrestri:22,test:[11,17],tetra:18,text:[5,21],thailand:20,than:[2,4,16,20,24],thank:[7,24],thei:[2,3,9,13,16,17,22,24],them:[15,19],themself:2,theoret:[1,9,17,25],theori:25,therefor:[2,5,7,11,24],therein:1,thi:[1,2,4,5,11,14,15,16,17,18,19,20,21,22,23,24],thou:22,thousand:15,thread:[2,7,11,14],three:22,threshold:[2,11,15,17],thrown:4,tile:5,time:[2,3,4,6,7,11,13,14,17,20,21],timestamp:22,tini:[2,16,18,24],tipografia:[3,13],titl:[5,15,19,21,22],tkde:[1,25],to_list:4,to_list_norm:4,tocsr:22,todens:22,togeth:[2,11,15],toi:[7,22],tolist:23,tommi:22,too:[2,14,15],tool:[0,2,7],top:[2,21,22,24],total:[2,3,16,18,24],toward:25,tracker:7,traffic:22,trajectori:[16,18],transact:[1,2,9,11,14,25],transax:21,transform:[1,9,21,22],transit:20,translat:[2,24],trapped_lov:18,treat:2,treatment:2,tree:[2,5,7,8,11,15,17,19,20,21,23,24,25],trouser:22,truncate_mod:15,truth:[1,9,17],ttagagcgcttaaccccacaggaaccgagttcccctcatgtggcaaggttctcccgcctcaggtatcacagaaacaaggtatgtagccctaggctacgagc:23,tune:[15,19],tunisia:20,turkei:20,turn:[2,15,21,24],tutori:7,twist:22,two:[1,2,5,9,15,22,24,25],twodiamond:18,twosplash:18,type:[2,6,22],typic:[2,17],ubuntu:24,uci:[18,25],ukrain:20,ult05:[17,25],ultrametr:[2,11],ultsch:25,unadjust:[1,9],unbal:18,under:[7,19],underli:1,undirect:14,unfortun:15,union:4,uniqu:[2,15,19,22,23],unit:20,unless:[2,24],unlik:5,updat:[4,21],url:25,usabl:[2,7,11],use:[2,4,7,10,11,23,24],used:[1,2,3,6,9,11,13,14,15,17,20,23,24],useful:[6,17,19],usefulness:17,user:[2,15,19,22,25],userid:22,userwarn:21,uses:[3,13,24],using:[2,11,14,25],usual:2,v11:25,valid:[1,9,11,17,20,23,25],valu:[1,2,3,4,6,15,21],vari:21,variabilita:[3,13],variabl:[2,11,14,17],varianc:[2,16,18,21,24],variant:[1,9,15,24],variou:[5,17],veb10:[18,25],vector:[1,2,3,4,5,6,9,11,13,17],verbos:[2,10,11,14,20],veri:[2,6,7,10,11,14,23,24],version:[1,2,7,9,11,15,16,17,18,22,24,25],versu:[1,9],vertex:[2,11],vertic:14,via:7,vietnam:20,vinh10a:25,vinh:[1,9,25],violat:[2,11],visibl:24,visual:[2,11,14,25],voronoi:15,wai:[2,5,17,19,22],wait:22,wallac:22,wanda:22,want:11,war:22,ward:[7,17,18,21,24],warn:[2,21],wdbc:18,weav:[15,20],websit:[21,22],weight:[2,11,14],welcom:7,well:[2,5,14,15,17],wellb:20,wellbalancedsocieti:20,were:[16,18,19,22,24],what:[2,19],whatev:19,when:[2,19],whenev:1,where:[1,2,3,4,5,6,9,11,13,14,16,22],wherea:15,wherev:18,whether:[2,10,11,14],which:[1,2,9,11,14,15,16,17,19,22,24],which_clust:22,whichev:4,white:20,whole:[2,7,11,22],whose:[2,4,6,11],wide:22,wiki:4,wikipedia:4,window:18,wine:18,wingnut:18,wise:18,within:[7,17],won:22,word:15,work:[2,6],workhors:20,workshop:25,worms_2:[18,24],worms_64:[16,18,24],wors:[16,24],worth:[2,11,15,17],would:[15,22],wrapper:1,wrong:22,wspace:21,wut:[16,18],www:[20,25],x86_64:24,x_1:[3,4,13],x_aniso:21,x_i:[3,4,13],x_j:[3,4,13],x_k:4,x_n:[3,13],x_oecd:20,xlim:21,xnn:25,xperienc:25,xtick:21,y_pred:[9,11,20,21],y_test:11,y_true:9,yeast:18,yellow:22,yemen:20,yet:20,yield:[2,3,13,16,22],ylim:[5,21],you:[4,5,11,14],young:22,your:14,ython:25,ytick:21,zealand:20,zenodo:25,zero:22,zhang:[2,10,25],zhong:25,zigzag:18,zigzag_noisi:18,zigzag_outli:18,zimbabw:20,zimek:[2,11,14,25]},titles:["Python Package genieclust Reference","genieclust.compare_partitions","genieclust.Genie","genieclust.inequity","genieclust.internal","genieclust.plots","genieclust.tools","genieclust: Fast and Robust Hierarchical Clustering with Noise Point Detection","R Package genieclust Reference","comparing_partitions: Pairwise Partition Similarity Scores","emst_mlpack: Euclidean Minimum Spanning Tree","gclust: The Genie++ Hierarchical Clustering Algorithm","genieclust-package: The Genie++ Hierarchical Clustering Algorithm (with Extras)","inequity: Inequity (Inequality) Measures","mst: Minimum Spanning Tree of the Pairwise Distance Graph","Basics","Benchmarks \u2014 Approximate Method","Benchmarks (How Good Is It?)","Benchmarks \u2014 Detailed Results","Clustering with Noise Points Detection","R Interface Examples","Comparing Algorithms on Toy Datasets","Example: Sparse Data and Movie Recommendation","Example: String Data and Grouping of DNA","Timings (How Fast Is It?)","References"],titleterms:{"break":15,"function":24,Ice:15,The:[11,12],algorithm:[11,12,21],also:[11,14,25],ami:18,approxim:16,argument:[9,10,11,13,14],author:12,basic:15,benchmark:[16,17,18],cluster:[7,11,12,19],compar:21,compare_partit:1,comparing_partit:9,comparis:19,comparison:15,data:[22,23],dataset:[17,18,21,24],dendrogram:15,descript:[9,10,11,12,13,14],detail:[9,11,13,14,18],detect:[7,19],distanc:14,dna:23,emst_mlpack:10,euclidean:10,exampl:[9,11,13,14,20,22,23],extra:12,factor:19,fast:[7,24],further:15,gclust:11,geni:[2,11,12],genieclust:[0,1,2,3,4,5,6,7,8,12],good:17,graph:14,group:23,hdbscan:[15,19],hierarch:[7,11,12],how:[17,24],indic:7,inequ:[3,13],interfac:20,intern:4,larg:[17,18,24],mean:15,measur:13,method:16,minimum:[10,14],movi:22,mst:14,nacc:18,nmi:18,nois:[7,19],number:24,packag:[0,8,12],pairwis:[9,14],partit:9,plot:5,point:[7,19],psi:18,python:0,read:15,recommend:22,refer:[0,8,9,10,11,13,14,25],result:18,robust:7,score:9,see:[11,14,25],similar:9,small:[17,18],smooth:19,span:[10,14],spars:22,string:23,summari:[17,18,24],tabl:7,thread:24,time:24,toi:21,tool:6,tree:[10,14],usag:[9,10,11,13,14],valu:[9,10,11,13,14]}}) \ No newline at end of file diff --git a/docs/weave/r.html b/docs/weave/r.html index 3fbb5906..2794837d 100644 --- a/docs/weave/r.html +++ b/docs/weave/r.html @@ -193,7 +193,7 @@

R Interface ExamplesΒΆ

-

The R package genieclust is available on the CRAN <https://cran.r-project.org/web/packages/genieclust/>_ repository. To install it, call:

+

The latest stable release of the R package genieclust is available from the CRAN repository. To install it, call:

install.packages("genieclust")
diff --git a/genieclust/genie.py b/genieclust/genie.py index 73e41f1d..10b91f14 100644 --- a/genieclust/genie.py +++ b/genieclust/genie.py @@ -4,7 +4,7 @@ # ############################################################################ # # # -# Copyleft (C) 2018-2020, Marek Gagolewski # +# Copyleft (C) 2018-2021, Marek Gagolewski # # # # # # This program is free software: you can redistribute it and/or modify #