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QC check for annotations to retracted publications #1479

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vanaukenk opened this issue Dec 19, 2016 · 1 comment
Closed

QC check for annotations to retracted publications #1479

vanaukenk opened this issue Dec 19, 2016 · 1 comment
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@vanaukenk
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vanaukenk commented Dec 19, 2016

Hi,
Following on from a help desk ticket:
http://jira.geneontology.org/browse/GO-1431

Can we explore adding a QC check for annotations to retracted publications?

A possible approach might be:

PubMed indexes retracted publications in the PublicationTypeList tag. Here's an example (XML formatting not coming through):

PublicationTypeList

PublicationType UI="D016428" Journal Article PublicationType

PublicationType UI="D013485" Research Support, Non-U.S. Gov't PublicationType

PublicationType UI="D013486" Research Support, U.S. Gov't, Non-P.H.S. PublicationType

PublicationType UI="D016441" Retracted Publication PublicationType

PublicationTypeList

Perhaps implementing a periodic query to PubMed for articles with Type "Retracted Publication" and then checking those PMIDs against the PMIDs in the GO database would work.

Thx.

@pgaudet
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pgaudet commented Jun 6, 2018

This issue was moved to geneontology/go-site#676

@pgaudet pgaudet closed this as completed Jun 6, 2018
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