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how to to add isoform IDs to the dbxrefs file #2367

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ValWood opened this issue Sep 26, 2024 · 2 comments
Closed

how to to add isoform IDs to the dbxrefs file #2367

ValWood opened this issue Sep 26, 2024 · 2 comments

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@ValWood
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ValWood commented Sep 26, 2024

PomBase needs to add isoform IDs to the dbxrefs file

WARNING - Invalid identifier:GORULE:0000027: SPCC548.03c.2 does not match any id_syntax patterns for PomBase in dbxrefs--PomBase SPCC1906.03 wtf19 is_active_in GO:0005737 PMID:32032353 ISS PomBase:SPCC548.03c.2 C wtf meiotic drive antidote Wtf19 wts1920a protein taxon:4896 20200914 PomBase part_of(CL:0000607)

can you point us to the place to do that?

@kimrutherford

@kimrutherford
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can you point us to the place to do that?

It needs to go in the PomBase entry in the db-xref.yaml file: https://github.com/geneontology/go-site/blob/master/metadata/db-xrefs.yaml

I'll add configuration for PomBase transcript IDs and make a pull request.

kimrutherford referenced this issue in kimrutherford/go-site Sep 26, 2024
Refs geneontology/helpdesk#503
@kltm
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kltm commented Sep 26, 2024

Merged.

@kltm kltm closed this as completed Sep 26, 2024
@kltm kltm transferred this issue from geneontology/helpdesk Sep 26, 2024
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