Replace CARO anatomical entity with Uberon.

[balhoff]

Leaving the CARO root type for now. For geneontology/go-ontology#25485.

[balhoff]

This change is merged to the dev branch.

[tmushayahama]

@balhoff do I need to change anything on the client side. Does this reflect on the shex document as well
@vanaukenk just to make sure, can you test, I believe CARO was hard coded into ART and also if the behavior still the same, especially ART.

[balhoff]

@tmushayahama I think you may need to look for the Uberon term rather than the CARO term wherever you are checking root types (or, both would be safest).

[balhoff]

@tmushayahama I have a ShEx PR: geneontology/go-shapes#302

[tmushayahama]

@balhoff thank you. So about the ShEx, I think we have confusion of branches. The PR doesn't contain, the exclude_from_extensions which @vanaukenk made, so may branch off dev PR to dev and make it master branch. dk the workflow

[balhoff]

@tmushayahama if you are using some other branch of go-shapes, a PR should be created to merge that into master.