diff --git a/src/config-utils.test.ts b/src/config-utils.test.ts
index 3ab4ca60a3..7971994396 100644
--- a/src/config-utils.test.ts
+++ b/src/config-utils.test.ts
@@ -2504,9 +2504,6 @@ test("no generateRegistries when CLI is too old", async (t) => {
       undefined,
       "'registries' input is not supported on CodeQL versions less than 2.10.4."
     );
-
-    // t.is(registriesAuthTokens, undefined);
-    // t.is(qlconfigFile, undefined);
   });
 });
 test("no generateRegistries when registries is undefined", async (t) => {
diff --git a/src/init.ts b/src/init.ts
index a50846d769..a2a9c1bf11 100644
--- a/src/init.ts
+++ b/src/init.ts
@@ -111,7 +111,8 @@ export async function runInit(
 
   try {
     if (await codeQlVersionAbove(codeql, CODEQL_VERSION_NEW_TRACING)) {
-      // Only create the qlconfig file if we haven't already created it.
+      // When parsing the codeql config in the CLI, we have not yet created the qlconfig file. 
+      // So, create it now.
       // If we are parsing the config file in the Action, then we already created the qlconfig
       // file in `configUtils.generateRegistries`.
       let registriesAuthTokens: string | undefined;