Java: add test cases for Maven and Gradle stalling in buildless mode

java/ql/integration-tests/all-platforms/java/buildless-gradle-timeout/.gitattributes

@@ -0,0 +1,6 @@
+#
+# https://help.github.com/articles/dealing-with-line-endings/
+#
+# These are explicitly windows files and should use crlf
+*.bat           text eol=crlf
+

java/ql/integration-tests/all-platforms/java/buildless-gradle-timeout/.gitignore

@@ -0,0 +1,5 @@
+# Ignore Gradle project-specific cache directory
+.gradle
+
+# Ignore Gradle build output directory
+build

java/ql/integration-tests/all-platforms/java/buildless-gradle-timeout/build.gradle

@@ -0,0 +1,30 @@
+/*
+ * This build file was auto generated by running the Gradle 'init' task
+ * by 'arthur' at '28/11/20 22:29' with Gradle 3.0
+ *
+ * This generated file contains a sample Java project to get you started.
+ * For more details take a look at the Java Quickstart chapter in the Gradle
+ * user guide available at https://docs.gradle.org/3.0/userguide/tutorial_java_projects.html
+ */
+
+// Apply the java plugin to add support for Java
+apply plugin: 'java'
+
+// In this section you declare where to find the dependencies of your project
+repositories {
+    // Use 'jcenter' for resolving your dependencies.
+    // You can declare any Maven/Ivy/file repository here.
+    jcenter()
+}
+
+// In this section you declare the dependencies for your production and test code
+dependencies {
+    // The production code uses the SLF4J logging API at compile time
+    compile 'org.slf4j:slf4j-api:1.7.21'
+
+    // Declare the dependency for your favourite test framework you want to use in your tests.
+    // TestNG is also supported by the Gradle Test task. Just change the
+    // testCompile dependency to testCompile 'org.testng:testng:6.8.1' and add
+    // 'test.useTestNG()' to your build script.
+    testCompile 'junit:junit:4.12'
+}

java/ql/integration-tests/all-platforms/java/buildless-gradle-timeout/diagnostics.expected

@@ -0,0 +1,98 @@
+{
+  "markdownMessage": "A Gradle process was aborted because it didn't write to the console for 5 seconds. Consider either lengthening the timeout if appropriate by setting CODEQL_EXTRACTOR_JAVA_BUILDLESS_CHILD_PROCESS_IDLE_TIMEOUT to a higher value or zero for no timeout, or else investigate why Gradle timed out. Java analysis will continue, but the analysis may be of reduced quality.",
+  "severity": "warning",
+  "source": {
+    "extractorName": "java",
+    "id": "java/autobuilder/buildless/gradle-timed-out",
+    "name": "Java analysis timed out running Gradle"
+  },
+  "visibility": {
+    "cliSummaryTable": true,
+    "statusPage": true,
+    "telemetry": true
+  }
+}
+{
+  "markdownMessage": "Build tool(s) should have been able to provide a recommended classpath but the attempt failed. Extraction will continue, but external dependencies will be inferred from the Java package names used. Consider troubleshooting the build tool error or using a build mode other than 'none'.",
+  "severity": "warning",
+  "source": {
+    "extractorName": "java",
+    "id": "java/autobuilder/buildless/classpath-from-tool-failed",
+    "name": "Failed to extract dependency information from build tool tool Gradle"
+  },
+  "visibility": {
+    "cliSummaryTable": true,
+    "statusPage": true,
+    "telemetry": true
+  }
+}
+{
+  "markdownMessage": "Java analysis used build tool Gradle to pick a JDK version and/or to recommend external dependencies.",
+  "severity": "unknown",
+  "source": {
+    "extractorName": "java",
+    "id": "java/autobuilder/buildless/using-build-tool-advice",
+    "name": "Java analysis used build tool Gradle to pick a JDK version and/or to recommend external dependencies"
+  },
+  "visibility": {
+    "cliSummaryTable": true,
+    "statusPage": false,
+    "telemetry": true
+  }
+}
+{
+  "markdownMessage": "Java analysis used the system default JDK.",
+  "severity": "unknown",
+  "source": {
+    "extractorName": "java",
+    "id": "java/autobuilder/buildless/jdk-system-default",
+    "name": "Java analysis used the system default JDK"
+  },
+  "visibility": {
+    "cliSummaryTable": true,
+    "statusPage": false,
+    "telemetry": true
+  }
+}
+{
+  "markdownMessage": "Java analysis with build-mode 'none' completed.",
+  "severity": "unknown",
+  "source": {
+    "extractorName": "java",
+    "id": "java/autobuilder/buildless/complete",
+    "name": "Java analysis with build-mode 'none' completed"
+  },
+  "visibility": {
+    "cliSummaryTable": true,
+    "statusPage": false,
+    "telemetry": true
+  }
+}
+{
+  "markdownMessage": "Java was extracted with build-mode set to 'none'. This means that all Java source in the working directory will be scanned, with build tools such as Maven and Gradle only contributing information about external dependencies.",
+  "severity": "note",
+  "source": {
+    "extractorName": "java",
+    "id": "java/autobuilder/buildless/mode-active",
+    "name": "Java was extracted with build-mode set to 'none'"
+  },
+  "visibility": {
+    "cliSummaryTable": true,
+    "statusPage": true,
+    "telemetry": true
+  }
+}
+{
+  "markdownMessage": "Running the Gradle plugin `org.gradle:github-dependency-graph-gradle-plugin` failed. This means precise dependency information will be unavailable, and so dependencies will be guessed based on Java package names. Consider investigating why this plugin fails to run.",
+  "severity": "warning",
+  "source": {
+    "extractorName": "java",
+    "id": "java/autobuilder/buildless/github-dependency-graph-gradle-plugin-failed",
+    "name": "Java analysis failed to extract a dependency graph from Gradle"
+  },
+  "visibility": {
+    "cliSummaryTable": true,
+    "statusPage": true,
+    "telemetry": true
+  }
+}

java/ql/integration-tests/all-platforms/java/buildless-gradle-timeout/force_sequential_test_execution

@@ -0,0 +1,3 @@
+# We currently have a bug where gradle tests become flaky when executed in parallel
+# - sometimes, gradle fails to connect to the gradle daemon.
+# Therefore, force this test to run sequentially.

java/ql/integration-tests/all-platforms/java/buildless-gradle-timeout/gradle/verification-metadata.xml

@@ -0,0 +1,7 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<verification-metadata>
+    <configuration>
+        <verify-metadata>true</verify-metadata>
+        <verify-signatures>false</verify-signatures>
+    </configuration>
+</verification-metadata>

java/ql/integration-tests/all-platforms/java/buildless-gradle-timeout/gradle/wrapper/gradle-wrapper.properties

@@ -0,0 +1,5 @@
+distributionBase=GRADLE_USER_HOME
+distributionPath=wrapper/dists
+distributionUrl=https\://240.0.0.0/distributions/gradle-99.99.99-bin.zip
+zipStoreBase=GRADLE_USER_HOME
+zipStorePath=wrapper/dists

java/ql/integration-tests/all-platforms/java/buildless-gradle-timeout/gradlew

@@ -0,0 +1,185 @@
+#!/usr/bin/env sh
+
+#
+# Copyright 2015 the original author or authors.
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#      https://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+#
+
+##############################################################################
+##
+##  Gradle start up script for UN*X
+##
+##############################################################################
+
+# Attempt to set APP_HOME
+# Resolve links: $0 may be a link
+PRG="$0"
+# Need this for relative symlinks.
+while [ -h "$PRG" ] ; do
+    ls=`ls -ld "$PRG"`
+    link=`expr "$ls" : '.*-> \(.*\)$'`
+    if expr "$link" : '/.*' > /dev/null; then
+        PRG="$link"
+    else
+        PRG=`dirname "$PRG"`"/$link"
+    fi
+done
+SAVED="`pwd`"
+cd "`dirname \"$PRG\"`/" >/dev/null
+APP_HOME="`pwd -P`"
+cd "$SAVED" >/dev/null
+
+APP_NAME="Gradle"
+APP_BASE_NAME=`basename "$0"`
+
+# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
+DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
+
+# Use the maximum available, or set MAX_FD != -1 to use that value.
+MAX_FD="maximum"
+
+warn () {
+    echo "$*"
+}
+
+die () {
+    echo
+    echo "$*"
+    echo
+    exit 1
+}
+
+# OS specific support (must be 'true' or 'false').
+cygwin=false
+msys=false
+darwin=false
+nonstop=false
+case "`uname`" in
+  CYGWIN* )
+    cygwin=true
+    ;;
+  Darwin* )
+    darwin=true
+    ;;
+  MINGW* )
+    msys=true
+    ;;
+  NONSTOP* )
+    nonstop=true
+    ;;
+esac
+
+CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
+
+
+# Determine the Java command to use to start the JVM.
+if [ -n "$JAVA_HOME" ] ; then
+    if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
+        # IBM's JDK on AIX uses strange locations for the executables
+        JAVACMD="$JAVA_HOME/jre/sh/java"
+    else
+        JAVACMD="$JAVA_HOME/bin/java"
+    fi
+    if [ ! -x "$JAVACMD" ] ; then
+        die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+    fi
+else
+    JAVACMD="java"
+    which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
+
+Please set the JAVA_HOME variable in your environment to match the
+location of your Java installation."
+fi
+
+# Increase the maximum file descriptors if we can.
+if [ "$cygwin" = "false" -a "$darwin" = "false" -a "$nonstop" = "false" ] ; then
+    MAX_FD_LIMIT=`ulimit -H -n`
+    if [ $? -eq 0 ] ; then
+        if [ "$MAX_FD" = "maximum" -o "$MAX_FD" = "max" ] ; then
+            MAX_FD="$MAX_FD_LIMIT"
+        fi
+        ulimit -n $MAX_FD
+        if [ $? -ne 0 ] ; then
+            warn "Could not set maximum file descriptor limit: $MAX_FD"
+        fi
+    else
+        warn "Could not query maximum file descriptor limit: $MAX_FD_LIMIT"
+    fi
+fi
+
+# For Darwin, add options to specify how the application appears in the dock
+if $darwin; then
+    GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\""
+fi
+
+# For Cygwin or MSYS, switch paths to Windows format before running java
+if [ "$cygwin" = "true" -o "$msys" = "true" ] ; then
+    APP_HOME=`cygpath --path --mixed "$APP_HOME"`
+    CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
+
+    JAVACMD=`cygpath --unix "$JAVACMD"`
+
+    # We build the pattern for arguments to be converted via cygpath
+    ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null`
+    SEP=""
+    for dir in $ROOTDIRSRAW ; do
+        ROOTDIRS="$ROOTDIRS$SEP$dir"
+        SEP="|"
+    done
+    OURCYGPATTERN="(^($ROOTDIRS))"
+    # Add a user-defined pattern to the cygpath arguments
+    if [ "$GRADLE_CYGPATTERN" != "" ] ; then
+        OURCYGPATTERN="$OURCYGPATTERN|($GRADLE_CYGPATTERN)"
+    fi
+    # Now convert the arguments - kludge to limit ourselves to /bin/sh
+    i=0
+    for arg in "$@" ; do
+        CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -`
+        CHECK2=`echo "$arg"|egrep -c "^-"`                                 ### Determine if an option
+
+        if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then                    ### Added a condition
+            eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"`
+        else
+            eval `echo args$i`="\"$arg\""
+        fi
+        i=`expr $i + 1`
+    done
+    case $i in
+        0) set -- ;;
+        1) set -- "$args0" ;;
+        2) set -- "$args0" "$args1" ;;
+        3) set -- "$args0" "$args1" "$args2" ;;
+        4) set -- "$args0" "$args1" "$args2" "$args3" ;;
+        5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;;
+        6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;;
+        7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;;
+        8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;;
+        9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;;
+    esac
+fi
+
+# Escape application args
+save () {
+    for i do printf %s\\n "$i" | sed "s/'/'\\\\''/g;1s/^/'/;\$s/\$/' \\\\/" ; done
+    echo " "
+}
+APP_ARGS=`save "$@"`
+
+# Collect all arguments for the java command, following the shell quoting and substitution rules
+eval set -- $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS "\"-Dorg.gradle.appname=$APP_BASE_NAME\"" -classpath "\"$CLASSPATH\"" org.gradle.wrapper.GradleWrapperMain "$APP_ARGS"
+
+exec "$JAVACMD" "$@"