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Segmentation Fault (core dumped) #227

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iremdnzl opened this issue Jan 10, 2023 · 2 comments
Open

Segmentation Fault (core dumped) #227

iremdnzl opened this issue Jan 10, 2023 · 2 comments

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@iremdnzl
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Here's the command line i use:
racon -m 8 -x 6 -g -8 -w 500 -t 4 ../all_reads.fastq Sample_ref.sam ~/REFERENCES/reference.fasta > RACON/racon_ref_Sample.fasta

This is the error:

[racon::Polisher::initialize] loaded target sequences 10.810765 s
[racon::Polisher::initialize] loaded sequences 2.468961 s
[racon::Polisher::initialize] loaded overlaps 1.142807 s
[racon::Polisher::initialize] aligning overlaps [====================] 1.910425 s
Segmentation fault (core dumped)

I have 28 G free memory. and this my sam file size:
618033983 Jan 10 12:48 Sample_ref.sam

What is wrong and what should I do?

@aewrwdw
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aewrwdw commented Jun 7, 2023

I have the same question with you, have you solved it? Could you tell me how to handle it?

@Ain-Ali
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Ain-Ali commented Sep 30, 2024

Hello, Did anybody get the solution for the above error ? In my view this is due to big .paf file. Mine is 52G. Don't know how to address this error ?

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3 participants