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Here's the command line i use: racon -m 8 -x 6 -g -8 -w 500 -t 4 ../all_reads.fastq Sample_ref.sam ~/REFERENCES/reference.fasta > RACON/racon_ref_Sample.fasta
racon -m 8 -x 6 -g -8 -w 500 -t 4 ../all_reads.fastq Sample_ref.sam ~/REFERENCES/reference.fasta > RACON/racon_ref_Sample.fasta
This is the error:
[racon::Polisher::initialize] loaded target sequences 10.810765 s [racon::Polisher::initialize] loaded sequences 2.468961 s [racon::Polisher::initialize] loaded overlaps 1.142807 s [racon::Polisher::initialize] aligning overlaps [====================] 1.910425 s Segmentation fault (core dumped)
I have 28 G free memory. and this my sam file size: 618033983 Jan 10 12:48 Sample_ref.sam
618033983 Jan 10 12:48 Sample_ref.sam
What is wrong and what should I do?
The text was updated successfully, but these errors were encountered:
I have the same question with you, have you solved it? Could you tell me how to handle it?
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Hello, Did anybody get the solution for the above error ? In my view this is due to big .paf file. Mine is 52G. Don't know how to address this error ?
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Here's the command line i use:
racon -m 8 -x 6 -g -8 -w 500 -t 4 ../all_reads.fastq Sample_ref.sam ~/REFERENCES/reference.fasta > RACON/racon_ref_Sample.fasta
This is the error:
I have 28 G free memory. and this my sam file size:
618033983 Jan 10 12:48 Sample_ref.sam
What is wrong and what should I do?
The text was updated successfully, but these errors were encountered: