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Did a couple hours diving into this, and it's the interplay of a bunch o' things. I either set, or added logic to set, every nginx and php timeout I could find.
For nginx I did:
fastcgi_read_timeout
fastcgi_send_timeout
fastcgi_connect_timeout
proxy_read_timeout
proxy_send_timeout
proxy_connect_timeout
send_timeout
keepalive_timeout
client_body_timeout
lingering_timeout
For PHP I did:
default_socket_timeout
max_execution_time
max_input_time
process_control_timeout
request_terminate_timeout
It also required me to really really really bump up the timeout values for Alpaca that y'all did in Islandora/Alpaca#79. Since they're in milliseconds, it needs to be something super duper high like 999999999999.
This was all done in a fervor to try and make things work, so I'm not sure if it's one, all, or some combination of these settings to do the trick. But I can at least contribute back the stuff I did to allow us to set all these values.
This issue will likely need to be resolve to handle full-scale ingests with large original files:
Islandora/documentation#1896
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