module 'tensorflow' has no attribute 'reset_default_graph'

[skatragadda-nygc]

Would you know how to fix this issue?

Constructing tensorflow graph
Error in py_get_attr_impl(x, name, silent) :
AttributeError: module 'tensorflow' has no attribute 'reset_default_graph'
Calls: run_clonealign ... py_get_attr_or_item -> py_get_attr -> py_get_attr_impl
Execution halted

Thanks

[kieranrcampbell]

This should be fixed in 205d8b8 - can you reinstall and try again? Note that this now requires tensorflow 2.1.0, readme updated with installation instructions

[Toseph]

Hello, I am having a similar issue. The latest update today did resolve the "no attribute" error, but now I see this.

Error in (function (gene_expression_data, copy_number_data, max_iter = 200, : unused argument (seed = 1392) Calls: run_clonealign -> do.call Execution halted

The Rscript looks like this,
`library(Matrix)
library(tensorflow)
library(clonealign)

#Load Rdata file.

load("HPNE_clonealign.Rdata")
reticulate::py_config()
Sys.getenv()
Sys.unsetenv('VIRTUAL_ENV')
Sys.unsetenv('PATH')
Sys.unsetenv('RETICULATE_REQUIRED_MODULE')
Sys.getenv()

#Fit model.
model_from_clonealign <- run_clonealign(ca_data$gene_expression_data,
ca_data$copy_number_data,
seed = 1392)

#Save.`

[kieranrcampbell]

Hi @Toseph

I removed the seed argument to clonealign so you can now set.seed(...) beforehand as per bioconductor guidelines.

Thanks,

Kieran

[Toseph]

Thanks for the update @kieranrcampbell! We will test this today and get back to you.