.travis.yml

language: python
python:
  - "3.8"

os:
  - linux
dist:
  - bionic
compiler:
  - gcc

# install dependencies

addons:
  apt:
    update: true
    packages:
      - build-essential
      - coinor-libipopt1v5
      - coinor-libipopt-dev
      - gfortran
      - lcov
      - libatlas-base-dev
      - libhdf5-serial-dev
      - pandoc
      - pkg-config
      - python-dev
      - swig3.0
      - zlib1g-dev

install:
  - mkdir -p ~/bin/ && ln -s /usr/bin/swig3.0 ~/bin/swig && export PATH=~/bin/:$PATH
  - pip3 install -r ./.travis_pip_reqs.txt
  - pip3 install .[ipopt,dlib,pyswarm,pymc3]
  - pip3 install https://github.com/petab-dev/petab/archive/develop.zip
  - pip3 install -e
      git+https://github.com/icb-dcm/amici.git@develop#egg=amici\&subdirectory=python/sdist
  - if [ "$TRAVIS_PULL_REQUEST" = "false" ]; then
      git clone --depth 1
        https://github.com/petab-dev/petab_test_suite tmp/petab_test_suite;
      pip3 install -e tmp/petab_test_suite;
    fi
  - if [ "$TRAVIS_PULL_REQUEST" != "false" ]; then
      pip install -r .rtd_pip_reqs.txt;
    fi

# run tests
script:
  - if [ "$TRAVIS_PULL_REQUEST" = "false" ]; then
      ./run_flake8.sh;
    fi
  - if [ "$TRAVIS_PULL_REQUEST" = "false" ]; then
      travis_wait 20 python3 -m pytest --cov=pypesto ./test/test_*;
    fi
  - if [ "$TRAVIS_PULL_REQUEST" = "false" ]; then
      travis_wait 20 xvfb-run -a python3 -m pytest
        --cov=pypesto --cov-append ./test/visualize/test_*;
    fi
  - if [ "$TRAVIS_PULL_REQUEST" != "false" ]; then
      sphinx-build -W -b html -d doc/_build/html doc/ doc/_build/html;
    fi
  - if [ "$TRAVIS_PULL_REQUEST" != "false" ]; then
      test/run_notebook.sh doc/example/;
    fi
  - if [ "$TRAVIS_PULL_REQUEST" = "false" ]; then
      coverage xml;
    fi
  - if [ "$TRAVIS_PULL_REQUEST" = "false" ]; then
      ./test/check_git_size.sh;
    fi

after_success:
  - bash <(curl -s https://codecov.io/bash)

deploy:
  provider: pypi
  username: $TWINE_USERNAME
  password: $TWINE_PASSWORD
  on:
    tags: true
  skip_existing: true

# cache dependencies

cache: pip