From af88835881f7a4ac6b9fb8b8ccb3ae61414b5079 Mon Sep 17 00:00:00 2001 From: github-actions Date: Thu, 19 Sep 2024 23:20:50 +0000 Subject: [PATCH 1/3] update dependencies for ubuntu-latest/py3.10 --- requirements/ubuntu-latest_py3.10.txt | 60 ++++++------- requirements/ubuntu-latest_py3.10_extras.txt | 91 +++++++++++--------- 2 files changed, 79 insertions(+), 72 deletions(-) diff --git a/requirements/ubuntu-latest_py3.10.txt b/requirements/ubuntu-latest_py3.10.txt index 9a506e81..1b24378c 100644 --- a/requirements/ubuntu-latest_py3.10.txt +++ b/requirements/ubuntu-latest_py3.10.txt @@ -2,7 +2,7 @@ # This file is autogenerated by pip-compile with Python 3.10 # by the following command: # -# pip-compile --output-file=./requirements/ubuntu-latest_py3.10.txt pyproject.toml +# pip-compile --output-file=requirements/ubuntu-latest_py3.10.txt pyproject.toml # aiofiles==22.1.0 # via ypy-websocket @@ -12,7 +12,7 @@ aiosqlite==0.20.0 # via ypy-websocket annotated-types==0.7.0 # via pydantic -anyio==4.4.0 +anyio==4.5.0 # via jupyter-server argon2-cffi==23.1.0 # via @@ -39,9 +39,9 @@ bleach==6.1.0 # via nbconvert blinker==1.8.2 # via flask -boto3==1.35.11 +boto3==1.35.23 # via maggma -botocore==1.35.11 +botocore==1.35.23 # via # boto3 # s3transfer @@ -49,7 +49,7 @@ cachelib==0.9.0 # via flask-caching certifi==2024.8.30 # via requests -cffi==1.17.0 +cffi==1.17.1 # via # argon2-cffi-bindings # cryptography @@ -68,13 +68,13 @@ crystaltoolkit-extension==0.6.0 # via crystal_toolkit (pyproject.toml) cycler==0.12.1 # via matplotlib -dash==2.18.0 +dash==2.18.1 # via crystal_toolkit (pyproject.toml) dash-core-components==2.0.0 # via dash dash-html-components==2.0.0 # via dash -dash-mp-components==0.4.45 +dash-mp-components==0.4.46 # via crystal_toolkit (pyproject.toml) dash-table==5.0.0 # via dash @@ -88,7 +88,7 @@ dnspython==2.6.1 # via # maggma # pymongo -emmet-core==0.84.2rc6 +emmet-core==0.84.2rc10 # via mp-api entrypoints==0.4 # via jupyter-client @@ -112,14 +112,14 @@ fqdn==1.5.1 # via jsonschema frozendict==2.4.4 # via crystal_toolkit (pyproject.toml) -idna==3.8 +idna==3.10 # via # anyio # jsonschema # requests imageio==2.35.1 # via scikit-image -importlib-metadata==8.4.0 +importlib-metadata==8.5.0 # via dash ipykernel==6.29.5 # via @@ -195,7 +195,7 @@ jupyter-server==2.14.2 # jupyterlab # jupyterlab-server # notebook-shim -jupyter-server-fileid==0.9.2 +jupyter-server-fileid==0.9.3 # via jupyter-server-ydoc jupyter-server-terminals==0.5.3 # via jupyter-server @@ -232,7 +232,7 @@ matplotlib-inline==0.1.7 # ipython mistune==3.0.2 # via nbconvert -mongomock==4.1.2 +mongomock==4.2.0.post1 # via maggma monty==2024.7.30 # via @@ -240,11 +240,11 @@ monty==2024.7.30 # maggma # mp-api # pymatgen -mp-api==0.42.1 +mp-api==0.42.2 # via crystal_toolkit (pyproject.toml) mpmath==1.3.0 # via sympy -msgpack==1.0.8 +msgpack==1.1.0 # via # maggma # mp-api @@ -318,7 +318,7 @@ pandas==2.2.2 # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.1 +paramiko==3.5.0 # via sshtunnel parso==0.8.4 # via jedi @@ -329,9 +329,9 @@ pillow==10.4.0 # imageio # matplotlib # scikit-image -platformdirs==4.2.2 +platformdirs==4.3.6 # via jupyter-core -plotly==5.24.0 +plotly==5.24.1 # via # dash # pymatgen @@ -355,14 +355,14 @@ pybtex==0.24.0 # pymatgen pycparser==2.22 # via cffi -pydantic==2.8.2 +pydantic==2.9.2 # via # emmet-core # maggma # pydantic-settings -pydantic-core==2.20.1 +pydantic-core==2.23.4 # via pydantic -pydantic-settings==2.4.0 +pydantic-settings==2.5.2 # via # crystal_toolkit (pyproject.toml) # emmet-core @@ -373,12 +373,12 @@ pygments==2.18.0 # via # ipython # nbconvert -pymatgen==2024.8.9 +pymatgen==2024.9.17.1 # via # crystal_toolkit (pyproject.toml) # emmet-core # mp-api -pymongo==4.8.0 +pymongo==4.9.1 # via maggma pynacl==1.5.0 # via paramiko @@ -396,8 +396,10 @@ python-dotenv==1.0.1 # via pydantic-settings python-json-logger==2.0.7 # via jupyter-events -pytz==2024.1 - # via pandas +pytz==2024.2 + # via + # mongomock + # pandas pyyaml==6.0.2 # via # jupyter-events @@ -444,7 +446,7 @@ s3transfer==0.10.2 # via boto3 scikit-image==0.24.0 # via crystal_toolkit (pyproject.toml) -scikit-learn==1.5.1 +scikit-learn==1.5.2 # via crystal_toolkit (pyproject.toml) scipy==1.14.1 # via @@ -479,7 +481,7 @@ sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -sympy==1.13.2 +sympy==1.13.3 # via pymatgen tabulate==0.9.0 # via pymatgen @@ -524,7 +526,7 @@ traitlets==5.14.3 # nbconvert # nbformat # notebook -types-python-dateutil==2.9.0.20240821 +types-python-dateutil==2.9.0.20240906 # via arrow typing-extensions==4.12.2 # via @@ -543,7 +545,7 @@ uncertainties==3.2.2 # via pymatgen uri-template==1.3.0 # via jsonschema -urllib3==2.2.2 +urllib3==2.2.3 # via # botocore # requests @@ -571,7 +573,7 @@ y-py==0.6.2 # ypy-websocket ypy-websocket==0.8.4 # via jupyter-server-ydoc -zipp==3.20.1 +zipp==3.20.2 # via importlib-metadata # The following packages are considered to be unsafe in a requirements file: diff --git a/requirements/ubuntu-latest_py3.10_extras.txt b/requirements/ubuntu-latest_py3.10_extras.txt index 50667739..e2b7d163 100644 --- a/requirements/ubuntu-latest_py3.10_extras.txt +++ b/requirements/ubuntu-latest_py3.10_extras.txt @@ -2,7 +2,7 @@ # This file is autogenerated by pip-compile with Python 3.10 # by the following command: # -# pip-compile --all-extras --output-file=./requirements/ubuntu-latest_py3.10_extras.txt pyproject.toml +# pip-compile --all-extras --output-file=requirements/ubuntu-latest_py3.10_extras.txt pyproject.toml # aiofiles==22.1.0 # via ypy-websocket @@ -20,7 +20,7 @@ alabaster==0.7.16 # via sphinx annotated-types==0.7.0 # via pydantic -anyio==4.4.0 +anyio==4.5.0 # via jupyter-server argon2-cffi==23.1.0 # via @@ -77,9 +77,9 @@ blinker==1.8.2 # via flask boltztrap2==24.7.2 # via ifermi -boto3==1.35.11 +boto3==1.35.23 # via maggma -botocore==1.35.11 +botocore==1.35.23 # via # boto3 # s3transfer @@ -93,7 +93,7 @@ certifi==2024.8.30 # netcdf4 # requests # urllib3 -cffi==1.17.0 +cffi==1.17.1 # via # argon2-cffi-bindings # cryptography @@ -137,7 +137,7 @@ cycler==0.12.1 # via matplotlib cython==3.0.11 # via boltztrap2 -dash[testing]==2.18.0 +dash[testing]==2.18.1 # via # crystal_toolkit (pyproject.toml) # dash-extensions @@ -148,7 +148,7 @@ dash-extensions==1.0.18 # via crystal_toolkit (pyproject.toml) dash-html-components==2.0.0 # via dash -dash-mp-components==0.4.45 +dash-mp-components==0.4.46 # via crystal_toolkit (pyproject.toml) dash-table==5.0.0 # via dash @@ -156,7 +156,7 @@ dash-testing-stub==0.0.2 # via dash dash-vtk==0.0.9 # via crystal_toolkit (pyproject.toml) -dask==2024.8.2 +dask==2024.9.0 # via # distributed # py4dstem @@ -207,7 +207,7 @@ dill==0.3.8 # py4dstem distlib==0.3.8 # via virtualenv -distributed==2024.8.2 +distributed==2024.9.0 # via py4dstem dnspython==2.6.1 # via @@ -225,7 +225,7 @@ editorconfig==0.12.4 # via jsbeautifier emdfile==0.0.15 # via py4dstem -emmet-core==0.84.2rc6 +emmet-core==0.84.2rc10 # via mp-api entrypoints==0.4 # via @@ -242,7 +242,7 @@ executing==2.1.0 # via stack-data fastjsonschema==2.20.0 # via nbformat -filelock==3.15.4 +filelock==3.16.1 # via # gdown # virtualenv @@ -292,9 +292,9 @@ hdf5plugin==5.0.0 # via py4dstem hiphive==1.3.1 # via crystal_toolkit (pyproject.toml) -identify==2.6.0 +identify==2.6.1 # via pre-commit -idna==3.8 +idna==3.10 # via # anyio # jsonschema @@ -308,11 +308,11 @@ imageio==2.35.1 # via scikit-image imagesize==1.4.1 # via sphinx -importlib-metadata==8.4.0 +importlib-metadata==8.5.0 # via # dash # dask -inflect==7.3.1 +inflect==7.4.0 # via robocrys iniconfig==2.0.0 # via pytest @@ -398,7 +398,7 @@ jupyter-server==2.14.2 # jupyterlab # jupyterlab-server # notebook-shim -jupyter-server-fileid==0.9.2 +jupyter-server-fileid==0.9.3 # via jupyter-server-ydoc jupyter-server-terminals==0.5.3 # via jupyter-server @@ -463,7 +463,7 @@ mistune==0.8.4 # via # m2r # nbconvert -mongomock==4.1.2 +mongomock==4.2.0.post1 # via maggma monty==2024.7.30 # via @@ -474,11 +474,11 @@ monty==2024.7.30 # mp-api # pymatgen # robocrys -more-itertools==10.4.0 +more-itertools==10.5.0 # via # dash-extensions # inflect -mp-api==0.42.1 +mp-api==0.42.2 # via # crystal_toolkit (pyproject.toml) # robocrys @@ -486,12 +486,12 @@ mpire==2.10.2 # via py4dstem mpmath==1.3.0 # via sympy -msgpack==1.0.8 +msgpack==1.1.0 # via # distributed # maggma # mp-api -multidict==6.0.5 +multidict==6.1.0 # via # aiohttp # yarl @@ -515,7 +515,7 @@ nbformat==5.10.4 # nbclient # nbconvert # notebook -ncempy==1.11.3 +ncempy==1.11.1 # via py4dstem nest-asyncio==1.6.0 # via @@ -623,7 +623,7 @@ pandas==2.2.2 # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.1 +paramiko==3.5.0 # via sshtunnel parso==0.8.4 # via jedi @@ -637,21 +637,23 @@ pexpect==4.9.0 # via # dephell-shells # ipython +phonopy==2.28.0 + # via crystal_toolkit (pyproject.toml) pillow==10.4.0 # via # imageio # matplotlib # scikit-image -platformdirs==4.2.2 +platformdirs==4.3.6 # via # black # jupyter-core # virtualenv -playwright==1.46.0 +playwright==1.47.0 # via # crystal_toolkit (pyproject.toml) # pytest-playwright -plotly==5.24.0 +plotly==5.24.1 # via # dash # ifermi @@ -680,7 +682,7 @@ pubchempy==1.0.4 # via robocrys pure-eval==0.2.3 # via stack-data -py4dstem==0.14.16 +py4dstem==0.14.17 # via crystal_toolkit (pyproject.toml) pyaml==24.7.0 # via scikit-optimize @@ -691,22 +693,22 @@ pybtex==0.24.0 # robocrys pycparser==2.22 # via cffi -pydantic==2.8.2 +pydantic==2.9.2 # via # dash-extensions # emmet-core # maggma # pydantic-settings -pydantic-core==2.20.1 +pydantic-core==2.23.4 # via pydantic -pydantic-settings==2.4.0 +pydantic-settings==2.5.2 # via # crystal_toolkit (pyproject.toml) # emmet-core # maggma pydash==8.0.3 # via maggma -pyee==11.1.0 +pyee==12.0.0 # via playwright pyfftw==0.14.0 # via @@ -720,7 +722,7 @@ pygments==2.18.0 # sphinx pylops==2.3.1 # via py4dstem -pymatgen==2024.8.9 +pymatgen==2024.9.17.1 # via # crystal_toolkit (pyproject.toml) # emmet-core @@ -728,7 +730,7 @@ pymatgen==2024.8.9 # matminer # mp-api # robocrys -pymongo==4.8.0 +pymongo==4.9.1 # via # maggma # matminer @@ -742,7 +744,7 @@ pysocks==1.7.1 # via # requests # urllib3 -pytest==8.3.2 +pytest==8.3.3 # via # crystal_toolkit (pyproject.toml) # dash @@ -753,7 +755,7 @@ pytest-base-url==2.1.0 # via pytest-playwright pytest-cov==5.0.0 # via crystal_toolkit (pyproject.toml) -pytest-playwright==0.5.1 +pytest-playwright==0.5.2 # via crystal_toolkit (pyproject.toml) python-dateutil==2.9.0.post0 # via @@ -771,8 +773,10 @@ python-slugify==8.0.4 # via pytest-playwright python-utils==3.8.2 # via numpy-stl -pytz==2024.1 - # via pandas +pytz==2024.2 + # via + # mongomock + # pandas pyyaml==6.0.2 # via # dask @@ -946,7 +950,7 @@ sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -sympy==1.13.2 +sympy==1.13.3 # via # hiphive # matminer @@ -1025,7 +1029,7 @@ traitlets==5.14.3 # nbconvert # nbformat # notebook -trimesh==4.4.8 +trimesh==4.4.9 # via ifermi trio==0.26.2 # via @@ -1035,7 +1039,7 @@ trio-websocket==0.11.1 # via selenium typeguard==4.3.0 # via inflect -types-python-dateutil==2.9.0.20240821 +types-python-dateutil==2.9.0.20240906 # via arrow typing-extensions==4.12.2 # via @@ -1046,6 +1050,7 @@ typing-extensions==4.12.2 # emmet-core # ipython # mp-api + # multidict # pydantic # pydantic-core # pydash @@ -1066,7 +1071,7 @@ urllib3[secure,socks]==1.26.20 # selenium urllib3-secure-extra==0.1.0 # via urllib3 -virtualenv==20.26.3 +virtualenv==20.26.5 # via pre-commit vtk==9.3.1 # via dash-vtk @@ -1096,7 +1101,7 @@ y-py==0.6.2 # via # jupyter-ydoc # ypy-websocket -yarl==1.9.8 +yarl==1.11.1 # via aiohttp yaspin==3.0.2 # via dephell @@ -1104,7 +1109,7 @@ ypy-websocket==0.8.4 # via jupyter-server-ydoc zict==3.0.0 # via distributed -zipp==3.20.1 +zipp==3.20.2 # via importlib-metadata zope-event==5.0 # via gevent From 82c773e11625638ccc65f81dee03d7be5b18a91c Mon Sep 17 00:00:00 2001 From: github-actions Date: Thu, 19 Sep 2024 23:20:45 +0000 Subject: [PATCH 2/3] update dependencies for ubuntu-latest/py3.11 --- requirements/ubuntu-latest_py3.11.txt | 60 ++++++------- requirements/ubuntu-latest_py3.11_extras.txt | 88 ++++++++++---------- 2 files changed, 77 insertions(+), 71 deletions(-) diff --git a/requirements/ubuntu-latest_py3.11.txt b/requirements/ubuntu-latest_py3.11.txt index a88e22bd..2236c67e 100644 --- a/requirements/ubuntu-latest_py3.11.txt +++ b/requirements/ubuntu-latest_py3.11.txt @@ -2,7 +2,7 @@ # This file is autogenerated by pip-compile with Python 3.11 # by the following command: # -# pip-compile --output-file=./requirements/ubuntu-latest_py3.11.txt pyproject.toml +# pip-compile --output-file=requirements/ubuntu-latest_py3.11.txt pyproject.toml # aiofiles==22.1.0 # via ypy-websocket @@ -12,7 +12,7 @@ aiosqlite==0.20.0 # via ypy-websocket annotated-types==0.7.0 # via pydantic -anyio==4.4.0 +anyio==4.5.0 # via jupyter-server argon2-cffi==23.1.0 # via @@ -39,9 +39,9 @@ bleach==6.1.0 # via nbconvert blinker==1.8.2 # via flask -boto3==1.35.11 +boto3==1.35.23 # via maggma -botocore==1.35.11 +botocore==1.35.23 # via # boto3 # s3transfer @@ -49,7 +49,7 @@ cachelib==0.9.0 # via flask-caching certifi==2024.8.30 # via requests -cffi==1.17.0 +cffi==1.17.1 # via # argon2-cffi-bindings # cryptography @@ -68,13 +68,13 @@ crystaltoolkit-extension==0.6.0 # via crystal_toolkit (pyproject.toml) cycler==0.12.1 # via matplotlib -dash==2.18.0 +dash==2.18.1 # via crystal_toolkit (pyproject.toml) dash-core-components==2.0.0 # via dash dash-html-components==2.0.0 # via dash -dash-mp-components==0.4.45 +dash-mp-components==0.4.46 # via crystal_toolkit (pyproject.toml) dash-table==5.0.0 # via dash @@ -88,7 +88,7 @@ dnspython==2.6.1 # via # maggma # pymongo -emmet-core==0.84.2rc6 +emmet-core==0.84.2rc10 # via mp-api entrypoints==0.4 # via jupyter-client @@ -108,14 +108,14 @@ fqdn==1.5.1 # via jsonschema frozendict==2.4.4 # via crystal_toolkit (pyproject.toml) -idna==3.8 +idna==3.10 # via # anyio # jsonschema # requests imageio==2.35.1 # via scikit-image -importlib-metadata==8.4.0 +importlib-metadata==8.5.0 # via dash ipykernel==6.29.5 # via @@ -191,7 +191,7 @@ jupyter-server==2.14.2 # jupyterlab # jupyterlab-server # notebook-shim -jupyter-server-fileid==0.9.2 +jupyter-server-fileid==0.9.3 # via jupyter-server-ydoc jupyter-server-terminals==0.5.3 # via jupyter-server @@ -228,7 +228,7 @@ matplotlib-inline==0.1.7 # ipython mistune==3.0.2 # via nbconvert -mongomock==4.1.2 +mongomock==4.2.0.post1 # via maggma monty==2024.7.30 # via @@ -236,11 +236,11 @@ monty==2024.7.30 # maggma # mp-api # pymatgen -mp-api==0.42.1 +mp-api==0.42.2 # via crystal_toolkit (pyproject.toml) mpmath==1.3.0 # via sympy -msgpack==1.0.8 +msgpack==1.1.0 # via # maggma # mp-api @@ -314,7 +314,7 @@ pandas==2.2.2 # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.1 +paramiko==3.5.0 # via sshtunnel parso==0.8.4 # via jedi @@ -325,9 +325,9 @@ pillow==10.4.0 # imageio # matplotlib # scikit-image -platformdirs==4.2.2 +platformdirs==4.3.6 # via jupyter-core -plotly==5.24.0 +plotly==5.24.1 # via # dash # pymatgen @@ -351,14 +351,14 @@ pybtex==0.24.0 # pymatgen pycparser==2.22 # via cffi -pydantic==2.8.2 +pydantic==2.9.2 # via # emmet-core # maggma # pydantic-settings -pydantic-core==2.20.1 +pydantic-core==2.23.4 # via pydantic -pydantic-settings==2.4.0 +pydantic-settings==2.5.2 # via # crystal_toolkit (pyproject.toml) # emmet-core @@ -369,12 +369,12 @@ pygments==2.18.0 # via # ipython # nbconvert -pymatgen==2024.8.9 +pymatgen==2024.9.17.1 # via # crystal_toolkit (pyproject.toml) # emmet-core # mp-api -pymongo==4.8.0 +pymongo==4.9.1 # via maggma pynacl==1.5.0 # via paramiko @@ -392,8 +392,10 @@ python-dotenv==1.0.1 # via pydantic-settings python-json-logger==2.0.7 # via jupyter-events -pytz==2024.1 - # via pandas +pytz==2024.2 + # via + # mongomock + # pandas pyyaml==6.0.2 # via # jupyter-events @@ -440,7 +442,7 @@ s3transfer==0.10.2 # via boto3 scikit-image==0.24.0 # via crystal_toolkit (pyproject.toml) -scikit-learn==1.5.1 +scikit-learn==1.5.2 # via crystal_toolkit (pyproject.toml) scipy==1.14.1 # via @@ -475,7 +477,7 @@ sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -sympy==1.13.2 +sympy==1.13.3 # via pymatgen tabulate==0.9.0 # via pymatgen @@ -518,7 +520,7 @@ traitlets==5.14.3 # nbconvert # nbformat # notebook -types-python-dateutil==2.9.0.20240821 +types-python-dateutil==2.9.0.20240906 # via arrow typing-extensions==4.12.2 # via @@ -536,7 +538,7 @@ uncertainties==3.2.2 # via pymatgen uri-template==1.3.0 # via jsonschema -urllib3==2.2.2 +urllib3==2.2.3 # via # botocore # requests @@ -564,7 +566,7 @@ y-py==0.6.2 # ypy-websocket ypy-websocket==0.8.4 # via jupyter-server-ydoc -zipp==3.20.1 +zipp==3.20.2 # via importlib-metadata # The following packages are considered to be unsafe in a requirements file: diff --git a/requirements/ubuntu-latest_py3.11_extras.txt b/requirements/ubuntu-latest_py3.11_extras.txt index 2fc02979..294608f9 100644 --- a/requirements/ubuntu-latest_py3.11_extras.txt +++ b/requirements/ubuntu-latest_py3.11_extras.txt @@ -20,7 +20,7 @@ alabaster==0.7.16 # via sphinx annotated-types==0.7.0 # via pydantic -anyio==4.4.0 +anyio==4.5.0 # via jupyter-server argon2-cffi==23.1.0 # via @@ -73,9 +73,9 @@ blinker==1.8.2 # via flask boltztrap2==24.7.2 # via ifermi -boto3==1.35.11 +boto3==1.35.23 # via maggma -botocore==1.35.11 +botocore==1.35.23 # via # boto3 # s3transfer @@ -89,7 +89,7 @@ certifi==2024.8.30 # netcdf4 # requests # urllib3 -cffi==1.17.0 +cffi==1.17.1 # via # argon2-cffi-bindings # cryptography @@ -133,7 +133,7 @@ cycler==0.12.1 # via matplotlib cython==3.0.11 # via boltztrap2 -dash[testing]==2.18.0 +dash[testing]==2.18.1 # via # crystal_toolkit (pyproject.toml) # dash-extensions @@ -144,7 +144,7 @@ dash-extensions==1.0.18 # via crystal_toolkit (pyproject.toml) dash-html-components==2.0.0 # via dash -dash-mp-components==0.4.45 +dash-mp-components==0.4.46 # via crystal_toolkit (pyproject.toml) dash-table==5.0.0 # via dash @@ -152,7 +152,7 @@ dash-testing-stub==0.0.2 # via dash dash-vtk==0.0.9 # via crystal_toolkit (pyproject.toml) -dask==2024.8.2 +dask==2024.9.0 # via # distributed # py4dstem @@ -203,7 +203,7 @@ dill==0.3.8 # py4dstem distlib==0.3.8 # via virtualenv -distributed==2024.8.2 +distributed==2024.9.0 # via py4dstem dnspython==2.6.1 # via @@ -221,7 +221,7 @@ editorconfig==0.12.4 # via jsbeautifier emdfile==0.0.15 # via py4dstem -emmet-core==0.84.2rc6 +emmet-core==0.84.2rc10 # via mp-api entrypoints==0.4 # via @@ -231,7 +231,7 @@ executing==2.1.0 # via stack-data fastjsonschema==2.20.0 # via nbformat -filelock==3.15.4 +filelock==3.16.1 # via # gdown # virtualenv @@ -281,9 +281,9 @@ hdf5plugin==5.0.0 # via py4dstem hiphive==1.3.1 # via crystal_toolkit (pyproject.toml) -identify==2.6.0 +identify==2.6.1 # via pre-commit -idna==3.8 +idna==3.10 # via # anyio # jsonschema @@ -297,11 +297,11 @@ imageio==2.35.1 # via scikit-image imagesize==1.4.1 # via sphinx -importlib-metadata==8.4.0 +importlib-metadata==8.5.0 # via # dash # dask -inflect==7.3.1 +inflect==7.4.0 # via robocrys iniconfig==2.0.0 # via pytest @@ -387,7 +387,7 @@ jupyter-server==2.14.2 # jupyterlab # jupyterlab-server # notebook-shim -jupyter-server-fileid==0.9.2 +jupyter-server-fileid==0.9.3 # via jupyter-server-ydoc jupyter-server-terminals==0.5.3 # via jupyter-server @@ -452,7 +452,7 @@ mistune==0.8.4 # via # m2r # nbconvert -mongomock==4.1.2 +mongomock==4.2.0.post1 # via maggma monty==2024.7.30 # via @@ -463,11 +463,11 @@ monty==2024.7.30 # mp-api # pymatgen # robocrys -more-itertools==10.4.0 +more-itertools==10.5.0 # via # dash-extensions # inflect -mp-api==0.42.1 +mp-api==0.42.2 # via # crystal_toolkit (pyproject.toml) # robocrys @@ -475,12 +475,12 @@ mpire==2.10.2 # via py4dstem mpmath==1.3.0 # via sympy -msgpack==1.0.8 +msgpack==1.1.0 # via # distributed # maggma # mp-api -multidict==6.0.5 +multidict==6.1.0 # via # aiohttp # yarl @@ -504,7 +504,7 @@ nbformat==5.10.4 # nbclient # nbconvert # notebook -ncempy==1.11.3 +ncempy==1.11.1 # via py4dstem nest-asyncio==1.6.0 # via @@ -612,7 +612,7 @@ pandas==2.2.2 # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.1 +paramiko==3.5.0 # via sshtunnel parso==0.8.4 # via jedi @@ -626,21 +626,23 @@ pexpect==4.9.0 # via # dephell-shells # ipython +phonopy==2.28.0 + # via crystal_toolkit (pyproject.toml) pillow==10.4.0 # via # imageio # matplotlib # scikit-image -platformdirs==4.2.2 +platformdirs==4.3.6 # via # black # jupyter-core # virtualenv -playwright==1.46.0 +playwright==1.47.0 # via # crystal_toolkit (pyproject.toml) # pytest-playwright -plotly==5.24.0 +plotly==5.24.1 # via # dash # ifermi @@ -669,7 +671,7 @@ pubchempy==1.0.4 # via robocrys pure-eval==0.2.3 # via stack-data -py4dstem==0.14.16 +py4dstem==0.14.17 # via crystal_toolkit (pyproject.toml) pyaml==24.7.0 # via scikit-optimize @@ -680,22 +682,22 @@ pybtex==0.24.0 # robocrys pycparser==2.22 # via cffi -pydantic==2.8.2 +pydantic==2.9.2 # via # dash-extensions # emmet-core # maggma # pydantic-settings -pydantic-core==2.20.1 +pydantic-core==2.23.4 # via pydantic -pydantic-settings==2.4.0 +pydantic-settings==2.5.2 # via # crystal_toolkit (pyproject.toml) # emmet-core # maggma pydash==8.0.3 # via maggma -pyee==11.1.0 +pyee==12.0.0 # via playwright pyfftw==0.14.0 # via @@ -709,7 +711,7 @@ pygments==2.18.0 # sphinx pylops==2.3.1 # via py4dstem -pymatgen==2024.8.9 +pymatgen==2024.9.17.1 # via # crystal_toolkit (pyproject.toml) # emmet-core @@ -717,7 +719,7 @@ pymatgen==2024.8.9 # matminer # mp-api # robocrys -pymongo==4.8.0 +pymongo==4.9.1 # via # maggma # matminer @@ -731,7 +733,7 @@ pysocks==1.7.1 # via # requests # urllib3 -pytest==8.3.2 +pytest==8.3.3 # via # crystal_toolkit (pyproject.toml) # dash @@ -742,7 +744,7 @@ pytest-base-url==2.1.0 # via pytest-playwright pytest-cov==5.0.0 # via crystal_toolkit (pyproject.toml) -pytest-playwright==0.5.1 +pytest-playwright==0.5.2 # via crystal_toolkit (pyproject.toml) python-dateutil==2.9.0.post0 # via @@ -760,8 +762,10 @@ python-slugify==8.0.4 # via pytest-playwright python-utils==3.8.2 # via numpy-stl -pytz==2024.1 - # via pandas +pytz==2024.2 + # via + # mongomock + # pandas pyyaml==6.0.2 # via # dask @@ -935,7 +939,7 @@ sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -sympy==1.13.2 +sympy==1.13.3 # via # hiphive # matminer @@ -1007,7 +1011,7 @@ traitlets==5.14.3 # nbconvert # nbformat # notebook -trimesh==4.4.8 +trimesh==4.4.9 # via ifermi trio==0.26.2 # via @@ -1017,7 +1021,7 @@ trio-websocket==0.11.1 # via selenium typeguard==4.3.0 # via inflect -types-python-dateutil==2.9.0.20240821 +types-python-dateutil==2.9.0.20240906 # via arrow typing-extensions==4.12.2 # via @@ -1046,7 +1050,7 @@ urllib3[secure,socks]==1.26.20 # selenium urllib3-secure-extra==0.1.0 # via urllib3 -virtualenv==20.26.3 +virtualenv==20.26.5 # via pre-commit vtk==9.3.1 # via dash-vtk @@ -1076,7 +1080,7 @@ y-py==0.6.2 # via # jupyter-ydoc # ypy-websocket -yarl==1.9.8 +yarl==1.11.1 # via aiohttp yaspin==3.0.2 # via dephell @@ -1084,7 +1088,7 @@ ypy-websocket==0.8.4 # via jupyter-server-ydoc zict==3.0.0 # via distributed -zipp==3.20.1 +zipp==3.20.2 # via importlib-metadata zope-event==5.0 # via gevent From edebc848704a9f37bad6d89ccf36689ef48d1d27 Mon Sep 17 00:00:00 2001 From: github-actions Date: Thu, 19 Sep 2024 23:21:01 +0000 Subject: [PATCH 3/3] update dependencies for ubuntu-latest/py3.9 --- requirements/ubuntu-latest_py3.9.txt | 56 ++++++------- requirements/ubuntu-latest_py3.9_extras.txt | 88 ++++++++++++--------- 2 files changed, 78 insertions(+), 66 deletions(-) diff --git a/requirements/ubuntu-latest_py3.9.txt b/requirements/ubuntu-latest_py3.9.txt index ba009179..444dde21 100644 --- a/requirements/ubuntu-latest_py3.9.txt +++ b/requirements/ubuntu-latest_py3.9.txt @@ -12,7 +12,7 @@ aiosqlite==0.20.0 # via ypy-websocket annotated-types==0.7.0 # via pydantic -anyio==4.4.0 +anyio==4.5.0 # via jupyter-server argon2-cffi==23.1.0 # via @@ -39,9 +39,9 @@ bleach==6.1.0 # via nbconvert blinker==1.8.2 # via flask -boto3==1.35.11 +boto3==1.35.23 # via maggma -botocore==1.35.11 +botocore==1.35.23 # via # boto3 # s3transfer @@ -49,7 +49,7 @@ cachelib==0.9.0 # via flask-caching certifi==2024.8.30 # via requests -cffi==1.17.0 +cffi==1.17.1 # via # argon2-cffi-bindings # cryptography @@ -68,13 +68,13 @@ crystaltoolkit-extension==0.6.0 # via crystal_toolkit (pyproject.toml) cycler==0.12.1 # via matplotlib -dash==2.18.0 +dash==2.18.1 # via crystal_toolkit (pyproject.toml) dash-core-components==2.0.0 # via dash dash-html-components==2.0.0 # via dash -dash-mp-components==0.4.45 +dash-mp-components==0.4.46 # via crystal_toolkit (pyproject.toml) dash-table==5.0.0 # via dash @@ -88,7 +88,7 @@ dnspython==2.6.1 # via # maggma # pymongo -emmet-core==0.84.2rc6 +emmet-core==0.84.2rc10 # via mp-api entrypoints==0.4 # via jupyter-client @@ -112,21 +112,21 @@ fqdn==1.5.1 # via jsonschema frozendict==2.4.4 # via crystal_toolkit (pyproject.toml) -idna==3.8 +idna==3.10 # via # anyio # jsonschema # requests imageio==2.35.1 # via scikit-image -importlib-metadata==8.4.0 +importlib-metadata==8.5.0 # via # dash # flask # jupyter-ydoc # jupyterlab-server # nbconvert -importlib-resources==6.4.4 +importlib-resources==6.4.5 # via # matplotlib # spglib @@ -204,7 +204,7 @@ jupyter-server==2.14.2 # jupyterlab # jupyterlab-server # notebook-shim -jupyter-server-fileid==0.9.2 +jupyter-server-fileid==0.9.3 # via jupyter-server-ydoc jupyter-server-terminals==0.5.3 # via jupyter-server @@ -241,7 +241,7 @@ matplotlib-inline==0.1.7 # ipython mistune==3.0.2 # via nbconvert -mongomock==4.1.2 +mongomock==4.2.0.post1 # via maggma monty==2024.7.30 # via @@ -249,11 +249,11 @@ monty==2024.7.30 # maggma # mp-api # pymatgen -mp-api==0.42.1 +mp-api==0.42.2 # via crystal_toolkit (pyproject.toml) mpmath==1.3.0 # via sympy -msgpack==1.0.8 +msgpack==1.1.0 # via # maggma # mp-api @@ -327,7 +327,7 @@ pandas==2.2.2 # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.1 +paramiko==3.5.0 # via sshtunnel parso==0.8.4 # via jedi @@ -338,9 +338,9 @@ pillow==10.4.0 # imageio # matplotlib # scikit-image -platformdirs==4.2.2 +platformdirs==4.3.6 # via jupyter-core -plotly==5.24.0 +plotly==5.24.1 # via # dash # pymatgen @@ -364,14 +364,14 @@ pybtex==0.24.0 # pymatgen pycparser==2.22 # via cffi -pydantic==2.8.2 +pydantic==2.9.2 # via # emmet-core # maggma # pydantic-settings -pydantic-core==2.20.1 +pydantic-core==2.23.4 # via pydantic -pydantic-settings==2.4.0 +pydantic-settings==2.5.2 # via # crystal_toolkit (pyproject.toml) # emmet-core @@ -387,7 +387,7 @@ pymatgen==2024.8.9 # crystal_toolkit (pyproject.toml) # emmet-core # mp-api -pymongo==4.8.0 +pymongo==4.9.1 # via maggma pynacl==1.5.0 # via paramiko @@ -405,8 +405,10 @@ python-dotenv==1.0.1 # via pydantic-settings python-json-logger==2.0.7 # via jupyter-events -pytz==2024.1 - # via pandas +pytz==2024.2 + # via + # mongomock + # pandas pyyaml==6.0.2 # via # jupyter-events @@ -453,7 +455,7 @@ s3transfer==0.10.2 # via boto3 scikit-image==0.24.0 # via crystal_toolkit (pyproject.toml) -scikit-learn==1.5.1 +scikit-learn==1.5.2 # via crystal_toolkit (pyproject.toml) scipy==1.13.1 # via @@ -488,7 +490,7 @@ sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -sympy==1.13.2 +sympy==1.13.3 # via pymatgen tabulate==0.9.0 # via pymatgen @@ -533,7 +535,7 @@ traitlets==5.14.3 # nbconvert # nbformat # notebook -types-python-dateutil==2.9.0.20240821 +types-python-dateutil==2.9.0.20240906 # via arrow typing-extensions==4.12.2 # via @@ -582,7 +584,7 @@ y-py==0.6.2 # ypy-websocket ypy-websocket==0.8.4 # via jupyter-server-ydoc -zipp==3.20.1 +zipp==3.20.2 # via # importlib-metadata # importlib-resources diff --git a/requirements/ubuntu-latest_py3.9_extras.txt b/requirements/ubuntu-latest_py3.9_extras.txt index 377ab432..94309f66 100644 --- a/requirements/ubuntu-latest_py3.9_extras.txt +++ b/requirements/ubuntu-latest_py3.9_extras.txt @@ -20,7 +20,7 @@ alabaster==0.7.16 # via sphinx annotated-types==0.7.0 # via pydantic -anyio==4.4.0 +anyio==4.5.0 # via jupyter-server argon2-cffi==23.1.0 # via @@ -77,9 +77,9 @@ blinker==1.8.2 # via flask boltztrap2==24.7.2 # via ifermi -boto3==1.35.11 +boto3==1.35.23 # via maggma -botocore==1.35.11 +botocore==1.35.23 # via # boto3 # s3transfer @@ -93,7 +93,7 @@ certifi==2024.8.30 # netcdf4 # requests # urllib3 -cffi==1.17.0 +cffi==1.17.1 # via # argon2-cffi-bindings # cryptography @@ -137,7 +137,7 @@ cycler==0.12.1 # via matplotlib cython==3.0.11 # via boltztrap2 -dash[testing]==2.18.0 +dash[testing]==2.18.1 # via # crystal_toolkit (pyproject.toml) # dash-extensions @@ -148,7 +148,7 @@ dash-extensions==1.0.18 # via crystal_toolkit (pyproject.toml) dash-html-components==2.0.0 # via dash -dash-mp-components==0.4.45 +dash-mp-components==0.4.46 # via crystal_toolkit (pyproject.toml) dash-table==5.0.0 # via dash @@ -225,7 +225,7 @@ editorconfig==0.12.4 # via jsbeautifier emdfile==0.0.15 # via py4dstem -emmet-core==0.84.2rc6 +emmet-core==0.84.2rc10 # via mp-api entrypoints==0.4 # via @@ -242,7 +242,7 @@ executing==2.1.0 # via stack-data fastjsonschema==2.20.0 # via nbformat -filelock==3.15.4 +filelock==3.16.1 # via # gdown # virtualenv @@ -284,6 +284,7 @@ h5py==3.11.0 # hdf5plugin # hiphive # ncempy + # phonopy # py4dstem habanero==1.2.6 # via crystal_toolkit (pyproject.toml) @@ -291,9 +292,9 @@ hdf5plugin==5.0.0 # via py4dstem hiphive==1.3.1 # via crystal_toolkit (pyproject.toml) -identify==2.6.0 +identify==2.6.1 # via pre-commit -idna==3.8 +idna==3.10 # via # anyio # jsonschema @@ -307,7 +308,7 @@ imageio==2.35.1 # via scikit-image imagesize==1.4.1 # via sphinx -importlib-metadata==8.4.0 +importlib-metadata==8.5.0 # via # dash # dask @@ -316,11 +317,11 @@ importlib-metadata==8.4.0 # jupyterlab-server # sphinx # typeguard -importlib-resources==6.4.4 +importlib-resources==6.4.5 # via # matplotlib # spglib -inflect==7.3.1 +inflect==7.4.0 # via robocrys iniconfig==2.0.0 # via pytest @@ -406,7 +407,7 @@ jupyter-server==2.14.2 # jupyterlab # jupyterlab-server # notebook-shim -jupyter-server-fileid==0.9.2 +jupyter-server-fileid==0.9.3 # via jupyter-server-ydoc jupyter-server-terminals==0.5.3 # via jupyter-server @@ -457,6 +458,7 @@ matplotlib==3.9.2 # boltztrap2 # ifermi # ncempy + # phonopy # py4dstem # pymatgen # vtk @@ -470,7 +472,7 @@ mistune==0.8.4 # via # m2r # nbconvert -mongomock==4.1.2 +mongomock==4.2.0.post1 # via maggma monty==2024.7.30 # via @@ -481,11 +483,11 @@ monty==2024.7.30 # mp-api # pymatgen # robocrys -more-itertools==10.4.0 +more-itertools==10.5.0 # via # dash-extensions # inflect -mp-api==0.42.1 +mp-api==0.42.2 # via # crystal_toolkit (pyproject.toml) # robocrys @@ -493,12 +495,12 @@ mpire==2.10.2 # via py4dstem mpmath==1.3.0 # via sympy -msgpack==1.0.8 +msgpack==1.1.0 # via # distributed # maggma # mp-api -multidict==6.0.5 +multidict==6.1.0 # via # aiohttp # yarl @@ -572,6 +574,7 @@ numpy==1.26.4 # numba # numpy-stl # pandas + # phonopy # py4dstem # pyfftw # pylops @@ -629,7 +632,7 @@ pandas==2.2.2 # pymatgen pandocfilters==1.5.1 # via nbconvert -paramiko==3.4.1 +paramiko==3.5.0 # via sshtunnel parso==0.8.4 # via jedi @@ -643,21 +646,23 @@ pexpect==4.9.0 # via # dephell-shells # ipython +phonopy==2.28.0 + # via crystal_toolkit (pyproject.toml) pillow==10.4.0 # via # imageio # matplotlib # scikit-image -platformdirs==4.2.2 +platformdirs==4.3.6 # via # black # jupyter-core # virtualenv -playwright==1.46.0 +playwright==1.47.0 # via # crystal_toolkit (pyproject.toml) # pytest-playwright -plotly==5.24.0 +plotly==5.24.1 # via # dash # ifermi @@ -697,22 +702,22 @@ pybtex==0.24.0 # robocrys pycparser==2.22 # via cffi -pydantic==2.8.2 +pydantic==2.9.2 # via # dash-extensions # emmet-core # maggma # pydantic-settings -pydantic-core==2.20.1 +pydantic-core==2.23.4 # via pydantic -pydantic-settings==2.4.0 +pydantic-settings==2.5.2 # via # crystal_toolkit (pyproject.toml) # emmet-core # maggma pydash==8.0.3 # via maggma -pyee==11.1.0 +pyee==12.0.0 # via playwright pyfftw==0.14.0 # via @@ -734,7 +739,7 @@ pymatgen==2024.8.9 # matminer # mp-api # robocrys -pymongo==4.8.0 +pymongo==4.9.1 # via # maggma # matminer @@ -748,7 +753,7 @@ pysocks==1.7.1 # via # requests # urllib3 -pytest==8.3.2 +pytest==8.3.3 # via # crystal_toolkit (pyproject.toml) # dash @@ -759,7 +764,7 @@ pytest-base-url==2.1.0 # via pytest-playwright pytest-cov==5.0.0 # via crystal_toolkit (pyproject.toml) -pytest-playwright==0.5.1 +pytest-playwright==0.5.2 # via crystal_toolkit (pyproject.toml) python-dateutil==2.9.0.post0 # via @@ -777,13 +782,16 @@ python-slugify==8.0.4 # via pytest-playwright python-utils==3.8.2 # via numpy-stl -pytz==2024.1 - # via pandas +pytz==2024.2 + # via + # mongomock + # pandas pyyaml==6.0.2 # via # dask # distributed # jupyter-events + # phonopy # pre-commit # pyaml # pybtex @@ -852,7 +860,7 @@ scikit-image==0.24.0 # crystal_toolkit (pyproject.toml) # ifermi # py4dstem -scikit-learn==1.5.1 +scikit-learn==1.5.2 # via # crystal_toolkit (pyproject.toml) # dscribe @@ -923,6 +931,7 @@ spglib==2.5.0 # boltztrap2 # hiphive # ifermi + # phonopy # pymatgen # robocrys sphinx==7.4.7 @@ -950,7 +959,7 @@ sshtunnel==0.4.0 # via maggma stack-data==0.6.3 # via ipython -sympy==1.13.2 +sympy==1.13.3 # via # hiphive # matminer @@ -1029,7 +1038,7 @@ traitlets==5.14.3 # nbconvert # nbformat # notebook -trimesh==4.4.8 +trimesh==4.4.9 # via ifermi trio==0.26.2 # via @@ -1039,7 +1048,7 @@ trio-websocket==0.11.1 # via selenium typeguard==4.3.0 # via inflect -types-python-dateutil==2.9.0.20240821 +types-python-dateutil==2.9.0.20240906 # via arrow typing-extensions==4.12.2 # via @@ -1052,6 +1061,7 @@ typing-extensions==4.12.2 # emmet-core # ipython # mp-api + # multidict # pydantic # pydantic-core # pydash @@ -1073,7 +1083,7 @@ urllib3[secure,socks]==1.26.20 # selenium urllib3-secure-extra==0.1.0 # via urllib3 -virtualenv==20.26.3 +virtualenv==20.26.5 # via pre-commit vtk==9.3.1 # via dash-vtk @@ -1103,7 +1113,7 @@ y-py==0.6.2 # via # jupyter-ydoc # ypy-websocket -yarl==1.9.8 +yarl==1.11.1 # via aiohttp yaspin==3.0.2 # via dephell @@ -1111,7 +1121,7 @@ ypy-websocket==0.8.4 # via jupyter-server-ydoc zict==3.0.0 # via distributed -zipp==3.20.1 +zipp==3.20.2 # via # importlib-metadata # importlib-resources