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PhyloData

Repository of data files for phylodynamics research

Datasets

  1. New York influenza BEAST XML for inferring genealogy using sequence data from [1].

    • NewYork.xml

  2. Regional influenza BEAST XML for inferring genealogy using sequence data from [2].

    • Europe.xml
    • India.xml
    • JapanKorea.xml
    • NorthChina.xml
    • Oceania.xml
    • SouthAmerica.xml
    • SouthChina.xml
    • SoutheastAsia.xml
    • USACanada.xml

References

  1. A. Rambaut, O. G. Pybus, M. I. Nelson, C. Viboud, J. K. Taubenberger, E. C. Holmes The genomic and epidemiological dynamics of human influenza A virus. Nature, 453(7195): 615–619, 2008.

  2. D. Zinder, T. Bedford, E. B. Baskerville, R. J. Woods, M. Roy, M. Pascual. Seasonality in the migration and establishment of H3N2 Influenza lineages with epidemic growth and decline. BMC Evolutionary Biology, 14(1): 272, 2014.