This package contains the Python implementation of
the mutualization and vbsupertree methods presented in the manuscript
"Variational Bayesian Supertrees"
by Karcher, M. D., Zheng, C., and Matsen IV, F. A.
To run our examples, decompress the data.zip archive, then read the comments and run the commands in
simulation.py: the simulated data analysis,hcv.py: the HCV real world dataset analysis.
The license for this code is GPL v3. This package is currently pre-alpha, the API has not yet been finalized, and backward compatibility is not yet assured, so use at your own risk.