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vbsupertree Python package

This package contains the Python implementation of the mutualization and vbsupertree methods presented in the manuscript "Variational Bayesian Supertrees" by Karcher, M. D., Zheng, C., and Matsen IV, F. A.

Examples

To run our examples, decompress the data.zip archive, then read the comments and run the commands in

  • simulation.py: the simulated data analysis,
  • hcv.py: the HCV real world dataset analysis.

License

The license for this code is GPL v3. This package is currently pre-alpha, the API has not yet been finalized, and backward compatibility is not yet assured, so use at your own risk.