small changes to cli arg help messages, and let benchmark account for…

… labels in run names
medema-group · Nov 22, 2024 · c90b3f4 · c90b3f4
1 parent e3dc848
commit c90b3f4
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Showing 6 changed files with 227 additions and 161 deletions.
diff --git a/big_scape/benchmarking/benchmark_data_loader.py b/big_scape/benchmarking/benchmark_data_loader.py
@@ -111,6 +111,10 @@ def load_computed_bs2_labels(self, data_path: Path) -> None:
         run_times = [
             p.stem.replace("_full", "") for p in data_path.glob("*_full.network")
         ]
+
+        # assume date-time is the last element, remove eventual labels
+        run_times = [rt[-19:] for rt in run_times]
+
         if len(run_times) == 0:
             raise FileNotFoundError("No BiG-SCAPE 2 output found")
         elif len(run_times) == 1: