From 3233ac99ce2ecc59c92090755752122110a5f674 Mon Sep 17 00:00:00 2001 From: Lampros Mouselimis Date: Tue, 5 Dec 2023 08:37:41 +0000 Subject: [PATCH] Deploy from Github Actions build 7098043232 [ci skip] Build URL: https://github.com/mlampros/ClusterR/actions/runs/7098043232 Commit: 414a14614fe2a75ccf1f60c615fe798c1c4d662c --- 404.html | 2 +- articles/index.html | 2 +- articles/the_clusterR_package.html | 15 ++++++++------- authors.html | 10 +++++----- index.html | 4 ++-- news/index.html | 2 +- pkgdown.yml | 2 +- reference/AP_affinity_propagation.html | 2 +- reference/AP_preferenceRange.html | 2 +- reference/Clara_Medoids.html | 2 +- reference/Cluster_Medoids.html | 2 +- reference/GMM.html | 2 +- reference/KMeans_arma.html | 2 +- reference/KMeans_rcpp.html | 2 +- reference/MiniBatchKmeans.html | 2 +- reference/Optimal_Clusters_GMM.html | 2 +- reference/Optimal_Clusters_KMeans.html | 2 +- reference/Optimal_Clusters_Medoids.html | 2 +- reference/Silhouette_Dissimilarity_Plot.html | 2 +- reference/center_scale.html | 2 +- reference/cost_clusters_from_dissim_medoids.html | 2 +- reference/dietary_survey_IBS.html | 2 +- reference/distance_matrix.html | 2 +- reference/entropy_formula.html | 2 +- reference/external_validation.html | 2 +- reference/function_interactive.html | 2 +- reference/index.html | 2 +- reference/mushroom.html | 2 +- reference/plot_2d.html | 2 +- reference/predict_GMM.html | 2 +- reference/predict_KMeans.html | 2 +- reference/predict_MBatchKMeans.html | 2 +- reference/predict_Medoids.html | 2 +- reference/silhouette_of_clusters.html | 2 +- reference/soybean.html | 2 +- reference/tryCatch_GMM.html | 2 +- reference/tryCatch_KMEANS_arma.html | 2 +- reference/tryCatch_optimal_clust_GMM.html | 2 +- 38 files changed, 50 insertions(+), 49 deletions(-) diff --git a/404.html b/404.html index bebca8a..eae001a 100644 --- a/404.html +++ b/404.html @@ -32,7 +32,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/articles/index.html b/articles/index.html index f85c8e1..cefed44 100644 --- a/articles/index.html +++ b/articles/index.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/articles/the_clusterR_package.html b/articles/the_clusterR_package.html index f4b4928..baf9c95 100644 --- a/articles/the_clusterR_package.html +++ b/articles/the_clusterR_package.html @@ -33,7 +33,7 @@ ClusterR - 1.3.1 + 1.3.2 @@ -82,7 +82,7 @@

Functionality of the ClusterR package

Lampros Mouselimis

-

2023-05-27

+

2023-12-05

Source: vignettes/the_clusterR_package.Rmd @@ -373,7 +373,8 @@
k-meansMini-batch-kmeans


-

Mini-batch-kmeans +

Mini-batch-kmeans +(http://www.eecs.tufts.edu/~dsculley/papers/fastkmeans.pdf) is a variation of the classical k-means algorithm. It is particularly useful for big data sets because rather than using the whole data (as k-means does) it uses mini-batches from random data samples to optimize @@ -413,7 +414,7 @@

Mini-batch-kmeanst = end - start cat('time to complete :', t, attributes(t)$units, '\n') -
## time to complete : 2.089431 secs
+
## time to complete : 1.581756 secs
 getcent_init = km_init$centroids
 
@@ -450,7 +451,7 @@ 
Mini-batch-kmeanst = end - start
   
 cat('time to complete :', t, attributes(t)$units, '\n')
-
## time to complete : 1.209606 secs
+
## time to complete : 0.8714654 secs
 getcent_mb = km_mb$centroids
 
@@ -716,7 +717,7 @@ 
K-Medoidst = end - start
   
 cat('time to complete :', t, attributes(t)$units, '\n')
-
## time to complete : 2.412783 secs
+
## time to complete : 1.756408 secs


@@ -741,7 +742,7 @@
K-Medoidst = end - start cat('time to complete :', t, attributes(t)$units, '\n') -
## time to complete : 12.08728 secs
+
## time to complete : 8.201057 secs


hamming-Clara-Medoids
diff --git a/authors.html b/authors.html index 6bf6aa5..3ef330d 100644 --- a/authors.html +++ b/authors.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 @@ -97,13 +97,13 @@

Citation

Mouselimis L (2023). ClusterR: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering. -R package version 1.3.1, https://CRAN.R-project.org/package=ClusterR. +R package version 1.3.2, https://CRAN.R-project.org/package=ClusterR. 

@Manual{,
   title = {{ClusterR}: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering},
   author = {Lampros Mouselimis},
   year = {2023},
-  note = {R package version 1.3.1},
+  note = {R package version 1.3.2},
   url = {https://CRAN.R-project.org/package=ClusterR},
 }

Sanderson C, Curtin R (2016). @@ -159,14 +159,14 @@

Citation

Dueck D (2009). Affinity Propagation: Clustering Data by Passing Messages. Ph.D. thesis, University of Toronto. -http://old.psi.toronto.edu/~psi/pubs2/2009/DDueck-thesis_printable.pdf. +https://hdl.handle.net/1807/17755. 

@PhdThesis{,
   title = {Affinity Propagation: Clustering Data by Passing Messages},
   author = {Delbert Dueck},
   year = {2009},
   school = {University of Toronto},
-  url = {http://old.psi.toronto.edu/~psi/pubs2/2009/DDueck-thesis_printable.pdf},
+  url = {https://hdl.handle.net/1807/17755},
 }

Frey B, Dueck D (2007). “Clustering by Passing Messages Between Data Points.” diff --git a/index.html b/index.html index 44008f9..4a382ce 100644 --- a/index.html +++ b/index.html @@ -33,7 +33,7 @@ ClusterR - 1.3.1 + 1.3.2 @@ -230,7 +230,7 @@

title = {{ClusterR}: Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans, K-Medoids and Affinity Propagation Clustering}, author = {Lampros Mouselimis}, year = {2023}, - note = {R package version 1.3.1}, + note = {R package version 1.3.2}, url = {https://CRAN.R-project.org/package=ClusterR}, }


diff --git a/news/index.html b/news/index.html index 1c6ccc4..f461381 100644 --- a/news/index.html +++ b/news/index.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/pkgdown.yml b/pkgdown.yml index 8cf2da2..83f8892 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -3,5 +3,5 @@ pkgdown: 2.0.7 pkgdown_sha: ~ articles: the_clusterR_package: the_clusterR_package.html -last_built: 2023-05-27T04:21Z +last_built: 2023-12-05T08:36Z diff --git a/reference/AP_affinity_propagation.html b/reference/AP_affinity_propagation.html index c1bca51..ef31cd7 100644 --- a/reference/AP_affinity_propagation.html +++ b/reference/AP_affinity_propagation.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/AP_preferenceRange.html b/reference/AP_preferenceRange.html index 46bf42e..955ffea 100644 --- a/reference/AP_preferenceRange.html +++ b/reference/AP_preferenceRange.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/Clara_Medoids.html b/reference/Clara_Medoids.html index a7b188e..8bda015 100644 --- a/reference/Clara_Medoids.html +++ b/reference/Clara_Medoids.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/Cluster_Medoids.html b/reference/Cluster_Medoids.html index 8c23a00..428c4e6 100644 --- a/reference/Cluster_Medoids.html +++ b/reference/Cluster_Medoids.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/GMM.html b/reference/GMM.html index 343ec9e..0d8e4b7 100644 --- a/reference/GMM.html +++ b/reference/GMM.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/KMeans_arma.html b/reference/KMeans_arma.html index e0fed80..f4a4159 100644 --- a/reference/KMeans_arma.html +++ b/reference/KMeans_arma.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/KMeans_rcpp.html b/reference/KMeans_rcpp.html index a330c7f..9f9fa16 100644 --- a/reference/KMeans_rcpp.html +++ b/reference/KMeans_rcpp.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/MiniBatchKmeans.html b/reference/MiniBatchKmeans.html index 4fbb327..bf97498 100644 --- a/reference/MiniBatchKmeans.html +++ b/reference/MiniBatchKmeans.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/Optimal_Clusters_GMM.html b/reference/Optimal_Clusters_GMM.html index 8694df0..1684c70 100644 --- a/reference/Optimal_Clusters_GMM.html +++ b/reference/Optimal_Clusters_GMM.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/Optimal_Clusters_KMeans.html b/reference/Optimal_Clusters_KMeans.html index 9084f0e..b7b7c1f 100644 --- a/reference/Optimal_Clusters_KMeans.html +++ b/reference/Optimal_Clusters_KMeans.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/Optimal_Clusters_Medoids.html b/reference/Optimal_Clusters_Medoids.html index b3622e6..02744ed 100644 --- a/reference/Optimal_Clusters_Medoids.html +++ b/reference/Optimal_Clusters_Medoids.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/Silhouette_Dissimilarity_Plot.html b/reference/Silhouette_Dissimilarity_Plot.html index 664abce..8458f85 100644 --- a/reference/Silhouette_Dissimilarity_Plot.html +++ b/reference/Silhouette_Dissimilarity_Plot.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/center_scale.html b/reference/center_scale.html index bef5a45..b5d0a95 100644 --- a/reference/center_scale.html +++ b/reference/center_scale.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/cost_clusters_from_dissim_medoids.html b/reference/cost_clusters_from_dissim_medoids.html index b32010a..1c2900e 100644 --- a/reference/cost_clusters_from_dissim_medoids.html +++ b/reference/cost_clusters_from_dissim_medoids.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/dietary_survey_IBS.html b/reference/dietary_survey_IBS.html index e281f2e..5474cff 100644 --- a/reference/dietary_survey_IBS.html +++ b/reference/dietary_survey_IBS.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/distance_matrix.html b/reference/distance_matrix.html index a485cac..df8f84a 100644 --- a/reference/distance_matrix.html +++ b/reference/distance_matrix.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/entropy_formula.html b/reference/entropy_formula.html index 209ff94..96baa9a 100644 --- a/reference/entropy_formula.html +++ b/reference/entropy_formula.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/external_validation.html b/reference/external_validation.html index 10aea87..e0e7ab3 100644 --- a/reference/external_validation.html +++ b/reference/external_validation.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/function_interactive.html b/reference/function_interactive.html index 393f9bf..917fc5a 100644 --- a/reference/function_interactive.html +++ b/reference/function_interactive.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/index.html b/reference/index.html index 78004dd..ac1bb9e 100644 --- a/reference/index.html +++ b/reference/index.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/mushroom.html b/reference/mushroom.html index 3f4ffb1..a5d2e39 100644 --- a/reference/mushroom.html +++ b/reference/mushroom.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/plot_2d.html b/reference/plot_2d.html index 5f87982..7e44c7c 100644 --- a/reference/plot_2d.html +++ b/reference/plot_2d.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/predict_GMM.html b/reference/predict_GMM.html index e90a57f..c54888d 100644 --- a/reference/predict_GMM.html +++ b/reference/predict_GMM.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/predict_KMeans.html b/reference/predict_KMeans.html index 07f743d..488e75f 100644 --- a/reference/predict_KMeans.html +++ b/reference/predict_KMeans.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/predict_MBatchKMeans.html b/reference/predict_MBatchKMeans.html index c68d4f3..482825a 100644 --- a/reference/predict_MBatchKMeans.html +++ b/reference/predict_MBatchKMeans.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/predict_Medoids.html b/reference/predict_Medoids.html index 481a94d..7ac9c9a 100644 --- a/reference/predict_Medoids.html +++ b/reference/predict_Medoids.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/silhouette_of_clusters.html b/reference/silhouette_of_clusters.html index aa085ae..312c6af 100644 --- a/reference/silhouette_of_clusters.html +++ b/reference/silhouette_of_clusters.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/soybean.html b/reference/soybean.html index d191e7b..adedbbd 100644 --- a/reference/soybean.html +++ b/reference/soybean.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/tryCatch_GMM.html b/reference/tryCatch_GMM.html index a60453e..477ae5f 100644 --- a/reference/tryCatch_GMM.html +++ b/reference/tryCatch_GMM.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/tryCatch_KMEANS_arma.html b/reference/tryCatch_KMEANS_arma.html index d4fa4d6..872e6a5 100644 --- a/reference/tryCatch_KMEANS_arma.html +++ b/reference/tryCatch_KMEANS_arma.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2 diff --git a/reference/tryCatch_optimal_clust_GMM.html b/reference/tryCatch_optimal_clust_GMM.html index be15a40..dd23aff 100644 --- a/reference/tryCatch_optimal_clust_GMM.html +++ b/reference/tryCatch_optimal_clust_GMM.html @@ -17,7 +17,7 @@ ClusterR - 1.3.1 + 1.3.2

hamming-Cluster-Medoids