diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md
index 8cea0f744..ccd8ae3d6 100644
--- a/.github/PULL_REQUEST_TEMPLATE.md
+++ b/.github/PULL_REQUEST_TEMPLATE.md
@@ -20,5 +20,5 @@ If applicable:
- [ ] All CIs are happy
- [ ] PR title starts with [MRG]
- [ ] [whats_new.rst](https://github.com/mne-tools/mne-bids/blob/main/doc/whats_new.rst) is updated
-- [ ] New contributors have been added to [.zenodo.json](https://github.com/mne-tools/mne-bids/blob/main/.zenodo.json)
+- [ ] New contributors have been added to [CITATION.cff](https://github.com/mne-tools/mne-bids/blob/main/CITATION.cff)
- [ ] PR description includes phrase "closes <#issue-number>"
diff --git a/.github/workflows/cffconvert.yml b/.github/workflows/cffconvert.yml
new file mode 100644
index 000000000..6851c52d3
--- /dev/null
+++ b/.github/workflows/cffconvert.yml
@@ -0,0 +1,19 @@
+name: cffconvert
+
+on:
+ push:
+ paths:
+ - CITATION.cff
+
+jobs:
+ validate:
+ name: "validate"
+ runs-on: ubuntu-latest
+ steps:
+ - name: Check out a copy of the repository
+ uses: actions/checkout@v3
+
+ - name: Check whether the citation metadata from CITATION.cff is valid
+ uses: citation-file-format/cffconvert-github-action@2.0.0
+ with:
+ args: "--validate"
diff --git a/.zenodo.json b/.zenodo.json
deleted file mode 100644
index dbaa67a19..000000000
--- a/.zenodo.json
+++ /dev/null
@@ -1,230 +0,0 @@
-{
- "title": "MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis",
- "description": "MNE-BIDS is a Python library to facilitate the analysis of MEG, EEG, and iEEG data with MNE-Python for data conforming to the BIDS (Brain Imaging Data Structure) format. More information about BIDS and MNE-Python can be found at bids.neuroimaging.io and mne.tools, respectively.",
- "creators": [
- {
- "affiliation": "Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany",
- "name": "Appelhoff, Stefan",
- "orcid": "0000-0001-8002-0877"
- },
- {
- "affiliation": "Department of Cognitive Sciences, Macquarie University, Sydney, Australia",
- "name": "Sanderson, Matthew",
- "orcid": "0000-0002-4645-8979"
- },
- {
- "affiliation": "Mozilla",
- "name":"Brooks, Teon L.",
- "orcid": "0000-0001-7344-3230"
- },
- {
- "affiliation": "Department of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland",
- "name": "van Vliet, Marijn",
- "orcid": "0000-0002-6537-6899"
- },
- {
- "affiliation": "Human Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 20892",
- "name": "Quentin, Romain",
- "orcid": "0000-0001-7659-3605"
- },
- {
- "affiliation": "UC Berkeley, Project Jupyter",
- "name": "Holdgraf, Chris",
- "orcid": "0000-0002-2391-0678"
- },
- {
- "affiliation": "Institut du cerveau et de la moelle épinière (ICM), Paris, France",
- "name": "Chaumon, Maximilien",
- "orcid": "0000-0001-9664-8861"
- },
- {
- "affiliation": "Department of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy",
- "name": "Mikulan, Ezequiel",
- "orcid": "0000-0001-7259-6120"
- },
- {
- "affiliation": "Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA",
- "name": "Tavabi, Kambiz",
- "orcid": "0000-0003-1881-892X"
- },
- {
- "affiliation": "Institute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany",
- "name": "Höchenberger, Richard",
- "orcid": "0000-0002-0380-4798"
- },
- {
- "affiliation": "Max-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany",
- "name": "Welke, Dominik",
- "orcid": "0000-0002-5529-1998"
- },
- {
- "affiliation": "Institute of Psychology, University of Graz, Austria",
- "name": "Brunner, Clemens",
- "orcid": "0000-0002-6030-2233"
- },
- {
- "affiliation": "University of Oregon, Eugene OR, USA",
- "name": "Rockhill, Alexander P.",
- "orcid": "0000-0003-3868-7453"
- },
- {
- "affiliation": "Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA",
- "name": "Larson, Eric",
- "orcid": "0000-0003-4782-5360"
- },
- {
- "affiliation": "Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA",
- "name": "Li, Adam",
- "orcid": "0000-0001-8421-365X"
- },
- {
- "affiliation": "Department of Psychology, University of Washington, Seattle WA, USA",
- "name": "Rokem, Ariel",
- "orcid": "0000-0003-0679-1985"
- },
- {
- "affiliation": "Institute for Learning & Brain Sciences, University of Washington, Seattle WA, USA",
- "name": "McCloy, Daniel",
- "orcid": "0000-0002-7572-3241"
- },
- {
- "affiliation": "Dalhousie University, Halifax, Nova Scotia",
- "name": "Hurst, Austin J.",
- "orcid": "0000-0002-0219-4131"
- },
- {
- "affiliation": "Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain",
- "name": "Lozano-Soldevilla, Diego",
- "orcid": "0000-0003-1794-8204"
- },
- {
- "affiliation": "Institute of Experimental Psychology, Heinrich Heine University Düsseldorf, Germany",
- "name": "Ort, Eduard",
- "orcid": "0000-0001-5546-3561"
- },
- {
- "affiliation": "Medical Research Council Cognition & Brain Sciences Unit, University of Cambridge",
- "name": "Knights, Ethan",
- "orcid": "0000-0001-6078-9160"
- },
- {
- "affiliation": "HSE University, Centre for Cognition and Decision Making, Institute for Cognitive Neuroscience, National Research University Higher School of Economics, Russian Federation",
- "name": "Kalenkovich, Evgenii",
- "orcid": "0000-0002-4606-4179"
- },
- {
- "name": "von Albedyll, Franziska"
- },
- {
- "name": "Wong, Fu-Te"
- },
- {
- "affiliation": "Facebook AI Research, Paris, France",
- "name": "King, Jean-Rémi",
- "orcid": "0000-0002-2121-170X"
- },
- {
- "affiliation": "Psychological & Brain Sciences, Indiana University, Bloomington, IN, USA",
- "name": "Niso Galán, Julia Guiomar",
- "orcid": "0000-0001-5872-8924"
- },
- {
- "name": "Koehler, Richard",
- "orcid": "0000-0002-5219-1289"
- },
- {
- "name": "Luke, Robert",
- "orcid": "0000-0002-4930-8351"
- },
- {
- "affiliation": "Central Institute of Mental Health, Mannheim, Germany",
- "name": "Kern, Simon",
- "orcid": "0000-0002-9050-9040"
- },
- {
- "affiliation": "Korea Advanced Institute of Science and Technology",
- "name": "Kim, Sin",
- "orcid": "0000-0003-4652-3758"
- },
- {
- "affiliation": "NeuroSpin, CEA, DRF/Joliot, INSERM, Cognitive Neuroimaging Unit, Université Paris-Saclay, 91191Gif/Yvette, France",
- "name": "Herbst, Sophie",
- "orcid": "0000-0001-8502-0366"
- },
- {
- "name": "Gupta, Swastika"
- },
- {
- "affiliation": "Department of Biomedical Engineering, Columbia University",
- "name": "Donoghue, Thomas",
- "orcid": "0000-0001-5911-0472"
- },
- {
- "affiliation": "Grupo Neuropsicología y Conducta, Universidad de Antioquia, Medellín, Colombia",
- "name": "Mantilla Ramos, Yorguin José",
- "orcid": "0000-0003-4473-0876"
- },
- {
- "affiliation": "McGill University, Montréal, QC, Canada",
- "name": "Huberty, Scott",
- "orcid": "0000-0003-2637-031X"
- },
- {
- "affiliation": "Human Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland",
- "name": "Scheltienne, Mathieu",
- "orcid": "0000-0001-8316-7436"
- },
- {
- "name": "Saini, Anand"
- },
- {
- "affiliation": "Université Paris-Saclay, Inria, CEA, Palaiseau, France",
- "name": "Gramfort, Alexandre",
- "orcid": "0000-0001-9791-4404"
- },
- {
- "affiliation": "Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA",
- "name": "Jas, Mainak",
- "orcid": "0000-0002-3199-9027"
- }
- ],
- "keywords": [
- "BIDS",
- "brain imaging data structure",
- "neuroscience",
- "neuroimaging",
- "mne",
- "python",
- "magnetoencephalography",
- "meg",
- "electroencephalography",
- "eeg",
- "ieeg"
- ],
- "license": "BSD-3-Clause",
- "upload_type": "software",
- "access_right": "open",
- "language": "eng",
- "related_identifiers": [
- {
- "relation": "isSupplementedBy",
- "identifier": "https://github.com/mne-tools/mne-bids/",
- "resource_type": "software"
- },
- {
- "relation": "isSupplementedBy",
- "identifier": "10.21105/joss.01896",
- "resource_type": "publication-article"
- },
- {
- "relation": "isSupplementedBy",
- "identifier": "10.5281/zenodo.3890934",
- "resource_type": "poster"
- },
- {
- "relation": "isSupplementedBy",
- "identifier": "10.5281/zenodo.3245427",
- "resource_type": "poster"
- }
- ]
-}
diff --git a/CITATION.cff b/CITATION.cff
new file mode 100644
index 000000000..6036f222f
--- /dev/null
+++ b/CITATION.cff
@@ -0,0 +1,251 @@
+# YAML 1.2
+---
+# Metadata for citation of this software according to the CFF format (https://citation-file-format.github.io/)
+cff-version: 1.2.0
+title: 'MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis'
+abstract: 'MNE-BIDS is a Python library to facilitate the analysis of MEG, EEG, and iEEG data with MNE-Python for data conforming to the BIDS (Brain Imaging Data Structure) format. More information about BIDS and MNE-Python can be found at bids.neuroimaging.io and mne.tools, respectively.'
+authors:
+ - given-names: Stefan
+ family-names: Appelhoff
+ affiliation: 'Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany'
+ orcid: 'https://orcid.org/0000-0001-8002-0877'
+ - given-names: Matthew
+ family-names: Sanderson
+ affiliation: 'Department of Cognitive Sciences, Macquarie University, Sydney, Australia'
+ orcid: 'https://orcid.org/0000-0002-4645-8979'
+ - given-names: Teon L.
+ family-names: Brooks
+ affiliation: 'Mozilla'
+ orcid: 'https://orcid.org/0000-0001-7344-3230'
+ - given-names: Marijn
+ family-names: van Vliet
+ affiliation: 'Department of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland'
+ orcid: 'https://orcid.org/0000-0002-6537-6899'
+ - given-names: Romain
+ family-names: Quentin
+ affiliation: 'Human Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 20892'
+ orcid: 'https://orcid.org/0000-0001-7659-3605'
+ - given-names: Chris
+ family-names: Holdgraf
+ affiliation: 'UC Berkeley, Project Jupyter'
+ orcid: 'https://orcid.org/0000-0002-2391-0678'
+ - given-names: Maximilien
+ family-names: Chaumon
+ affiliation: 'Institut du cerveau et de la moelle épinière (ICM), Paris, France'
+ orcid: 'https://orcid.org/0000-0001-9664-8861'
+ - given-names: Ezequiel
+ family-names: Mikulan
+ affiliation: "Department of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy"
+ orcid: 'https://orcid.org/0000-0001-7259-6120'
+ - given-names: Kambiz
+ family-names: Tavabi
+ affiliation: 'Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA'
+ orcid: 'https://orcid.org/0000-0003-1881-892X'
+ - given-names: Richard
+ family-names: Höchenberger
+ affiliation: 'Institute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany'
+ orcid: 'https://orcid.org/0000-0002-0380-4798'
+ - given-names: Dominik
+ family-names: Welke
+ affiliation: 'Max-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany'
+ orcid: 'https://orcid.org/0000-0002-5529-1998'
+ - given-names: Clemens
+ family-names: Brunner
+ affiliation: 'Institute of Psychology, University of Graz, Austria'
+ orcid: 'https://orcid.org/0000-0002-6030-2233'
+ - given-names: Alexander P.
+ family-names: Rockhill
+ affiliation: 'University of Oregon, Eugene OR, USA'
+ orcid: 'https://orcid.org/0000-0003-3868-7453'
+ - given-names: Eric
+ family-names: Larson
+ affiliation: 'Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA'
+ orcid: 'https://orcid.org/0000-0003-4782-5360'
+ - given-names: Adam
+ family-names: Li
+ affiliation: 'Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA'
+ orcid: 'https://orcid.org/0000-0001-8421-365X'
+ - given-names: Ariel
+ family-names: Rokem
+ affiliation: 'Department of Psychology, University of Washington, Seattle WA, USA'
+ orcid: 'https://orcid.org/0000-0003-0679-1985'
+ - given-names: Daniel
+ family-names: McCloy
+ affiliation: 'Institute for Learning & Brain Sciences, University of Washington, Seattle WA, USA'
+ orcid: 'https://orcid.org/0000-0002-7572-3241'
+ - given-names: Austin J.
+ family-names: Hurst
+ affiliation: 'Dalhousie University, Halifax, Nova Scotia'
+ orcid: 'https://orcid.org/0000-0002-0219-4131'
+ - given-names: Diego
+ family-names: Lozano-Soldevilla
+ affiliation: "Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS), Barcelona, Spain"
+ orcid: 'https://orcid.org/0000-0003-1794-8204'
+ - given-names: Eduard
+ family-names: Ort
+ affiliation: 'Institute of Experimental Psychology, Heinrich Heine University Düsseldorf, Germany'
+ orcid: 'https://orcid.org/0000-0001-5546-3561'
+ - given-names: Ethan
+ family-names: Knights
+ affiliation: 'Medical Research Council Cognition & Brain Sciences Unit, University of Cambridge'
+ orcid: 'https://orcid.org/0000-0001-6078-9160'
+ - given-names: Evgenii
+ family-names: Kalenkovich
+ affiliation: 'HSE University, Centre for Cognition and Decision Making, Institute for Cognitive Neuroscience, National Research University Higher School of Economics, Russian Federation'
+ orcid: 'https://orcid.org/0000-0002-4606-4179'
+ - given-names: Franziska
+ family-names: von Albedyll
+ - given-names: Fu-Te
+ family-names: Wong
+ - given-names: Jean-Rémi
+ family-names: King
+ affiliation: 'Facebook AI Research, Paris, France'
+ orcid: 'https://orcid.org/0000-0002-2121-170X'
+ - given-names: Julia Guiomar
+ family-names: Niso Galán
+ affiliation: 'Psychological & Brain Sciences, Indiana University, Bloomington, IN, USA'
+ orcid: 'https://orcid.org/0000-0001-5872-8924'
+ - given-names: Richard
+ family-names: Koehler
+ orcid: 'https://orcid.org/0000-0002-5219-1289'
+ - given-names: Robert
+ family-names: Luke
+ orcid: 'https://orcid.org/0000-0002-4930-8351'
+ - given-names: Simon
+ family-names: Kern
+ affiliation: 'Central Institute of Mental Health, Mannheim, Germany'
+ orcid: 'https://orcid.org/0000-0002-9050-9040'
+ - given-names: Sin
+ family-names: Kim
+ affiliation: 'Korea Advanced Institute of Science and Technology'
+ orcid: 'https://orcid.org/0000-0003-4652-3758'
+ - given-names: Sophie
+ family-names: Herbst
+ affiliation: 'NeuroSpin, CEA, DRF/Joliot, INSERM, Cognitive Neuroimaging Unit, Université Paris-Saclay, 91191Gif/Yvette, France'
+ orcid: 'https://orcid.org/0000-0001-8502-0366'
+ - given-names: Swastika
+ family-names: Gupta
+ - given-names: Thomas
+ family-names: Donoghue
+ affiliation: 'Department of Biomedical Engineering, Columbia University'
+ orcid: 'https://orcid.org/0000-0001-5911-0472'
+ - given-names: Yorguin José
+ family-names: Mantilla Ramos
+ affiliation: 'Grupo Neuropsicología y Conducta, Universidad de Antioquia, Medellín, Colombia'
+ orcid: 'https://orcid.org/0000-0003-4473-0876'
+ - given-names: Scott
+ family-names: Huberty
+ affiliation: 'McGill University, Montréal, QC, Canada'
+ orcid: 'https://orcid.org/0000-0003-2637-031X'
+ - given-names: Mathieu
+ family-names: Scheltienne
+ affiliation: 'Human Neuroscience Platform, Fondation Campus Biotech Geneva, Geneva, Switzerland'
+ orcid: 'https://orcid.org/0000-0001-8316-7436'
+ - given-names: Anand
+ family-names: Saini
+ - given-names: Alexandre
+ family-names: Gramfort
+ affiliation: 'Université Paris-Saclay, Inria, CEA, Palaiseau, France'
+ orcid: 'https://orcid.org/0000-0001-9791-4404'
+ - given-names: Mainak
+ family-names: Jas
+ affiliation: 'Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA'
+ orcid: 'https://orcid.org/0000-0002-3199-9027'
+type: software
+repository-code: 'https://github.com/mne-tools/mne-bids'
+license: BSD-3-Clause
+keywords:
+ - BIDS
+ - brain imaging data structure
+ - neuroscience
+ - neuroimaging
+ - mne
+ - python
+ - magnetoencephalography
+ - meg
+ - electroencephalography
+ - eeg
+ - ieeg
+message: >-
+ Please cite this software using the metadata from
+ 'preferred-citation' in the CITATION.cff file.
+preferred-citation:
+ title: >-
+ MNE-BIDS: Organizing electrophysiological data into the BIDS format and facilitating their analysis
+ journal: Journal of Open Source Software
+ type: article
+ year: 2019
+ volume: 4
+ issue: 44
+ start: 1896
+ doi: 10.21105/joss.01896
+ authors:
+ - given-names: Stefan
+ family-names: Appelhoff
+ affiliation: 'Center for Adaptive Rationality, Max Planck Institute for Human Development, Berlin, Germany'
+ orcid: 'https://orcid.org/0000-0001-8002-0877'
+ - given-names: Matthew
+ family-names: Sanderson
+ affiliation: 'Department of Cognitive Sciences, Macquarie University, Sydney, Australia'
+ orcid: 'https://orcid.org/0000-0002-4645-8979'
+ - given-names: Teon L.
+ family-names: Brooks
+ affiliation: 'Mozilla'
+ orcid: 'https://orcid.org/0000-0001-7344-3230'
+ - given-names: Marijn
+ family-names: van Vliet
+ affiliation: 'Department of Neuroscience and Biomedical Engineering, Aalto University, Espoo, Finland'
+ orcid: 'https://orcid.org/0000-0002-6537-6899'
+ - given-names: Romain
+ family-names: Quentin
+ affiliation: 'Human Cortical Physiology and Neurorehabilitation Section, NINDS, NIH, Bethesda, Maryland 20892'
+ orcid: 'https://orcid.org/0000-0001-7659-3605'
+ - given-names: Chris
+ family-names: Holdgraf
+ affiliation: 'UC Berkeley, Project Jupyter'
+ orcid: 'https://orcid.org/0000-0002-2391-0678'
+ - given-names: Maximilien
+ family-names: Chaumon
+ affiliation: 'Institut du cerveau et de la moelle épinière (ICM), Paris, France'
+ orcid: 'https://orcid.org/0000-0001-9664-8861'
+ - given-names: Ezequiel
+ family-names: Mikulan
+ affiliation: "Department of Biomedical and Clinical Sciences 'L. Sacco', University of Milan, Milan, Italy"
+ orcid: 'https://orcid.org/0000-0001-7259-6120'
+ - given-names: Kambiz
+ family-names: Tavabi
+ affiliation: 'Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA'
+ orcid: 'https://orcid.org/0000-0003-1881-892X'
+ - given-names: Richard
+ family-names: Höchenberger
+ affiliation: 'Institute of Neuroscience and Medicine (INM-3), Research Center Jülich, Germany'
+ orcid: 'https://orcid.org/0000-0002-0380-4798'
+ - given-names: Dominik
+ family-names: Welke
+ affiliation: 'Max-Planck-Institute for Empirical Aesthetics, Frankfurt a.M., Germany'
+ orcid: 'https://orcid.org/0000-0002-5529-1998'
+ - given-names: Clemens
+ family-names: Brunner
+ affiliation: 'Institute of Psychology, University of Graz, Austria'
+ orcid: 'https://orcid.org/0000-0002-6030-2233'
+ - given-names: Alexander P.
+ family-names: Rockhill
+ affiliation: 'University of Oregon, Eugene OR, USA'
+ orcid: 'https://orcid.org/0000-0003-3868-7453'
+ - given-names: Eric
+ family-names: Larson
+ affiliation: 'Institute for Learning and Brain Sciences, University of Washington, Seattle, WA, USA'
+ orcid: 'https://orcid.org/0000-0003-4782-5360'
+ - given-names: Alexandre
+ family-names: Gramfort
+ affiliation: 'Université Paris-Saclay, Inria, CEA, Palaiseau, France'
+ orcid: 'https://orcid.org/0000-0001-9791-4404'
+ - given-names: Mainak
+ family-names: Jas
+ affiliation: 'Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA'
+ orcid: 'https://orcid.org/0000-0002-3199-9027'
+identifiers:
+ - description: "Code archive on Zenodo"
+ type: doi
+ value: 10.5281/zenodo.3580272
+...
diff --git a/MANIFEST.in b/MANIFEST.in
index 596a4354f..ba04ee528 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -23,7 +23,7 @@ exclude tools
prune .circleci
prune paper
-exclude .zenodo.json
+exclude CITATION.cff
exclude Makefile
exclude CONTRIBUTING.md
exclude *.yml