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ENH: Better error message #1080

Merged
merged 3 commits into from
Oct 13, 2022
Merged

ENH: Better error message #1080

merged 3 commits into from
Oct 13, 2022

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larsoner
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Running MNE-BIDS-Pipeline I got a slightly cryptic error:

  File "/home/larsoner/python/mne-bids-pipeline/mne_bids_pipeline/scripts/preprocessing/_02_frequency_filter.py", line 101, in get_input_fnames_frequency_filter
    in_files[f'raw_run-{run}'].find_empty_room()
  File "/home/larsoner/python/mne-bids/mne_bids/path.py", line 957, in find_empty_room
    assert er_bids_path.fpath.exists()

AssertionError

I realized the problem with my dataset (I excluded some files while downloading), but I think this new error message would have helped:

  File "/home/larsoner/python/mne-bids-pipeline/mne_bids_pipeline/scripts/preprocessing/_02_frequency_filter.py", line 101, in get_input_fnames_frequency_filter
    in_files[f'raw_run-{run}'].find_empty_room()
  File "/home/larsoner/python/mne-bids/mne_bids/path.py", line 957, in find_empty_room
    raise FileNotFoundError(

FileNotFoundError: Empty-room BIDS path resolved but not found:
/home/larsoner/mne_data/ds000247/sub-emptyroom/ses-18901014/meg/sub-emptyroom_ses-18901014_task-noise_run-01_meg.ds
Check your BIDS dataset for completeness.

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codecov bot commented Oct 13, 2022

Codecov Report

Merging #1080 (a74c895) into main (b522269) will not change coverage.
The diff coverage is 100.00%.

@@           Coverage Diff           @@
##             main    #1080   +/-   ##
=======================================
  Coverage   95.19%   95.19%           
=======================================
  Files          24       24           
  Lines        3847     3847           
=======================================
  Hits         3662     3662           
  Misses        185      185           
Impacted Files Coverage Δ
mne_bids/path.py 97.58% <100.00%> (ø)

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@larsoner
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CI failure is coverage, but I'm not sure there is a good way to test this, unless it's easy to fake a BIDS dataset that should have an associated empty-room data based on its sidecar but doesn't...

@larsoner
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Nice testing infrastructure, it was easy 👍

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@sappelhoff sappelhoff left a comment

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Nice and clean, thanks @larsoner!

@sappelhoff sappelhoff merged commit 76cc65f into mne-tools:main Oct 13, 2022
@larsoner larsoner deleted the err branch October 13, 2022 21:47
sappelhoff pushed a commit to sappelhoff/mne-bids that referenced this pull request Oct 21, 2022
* ENH: Better error message

* FIX: Beautiful infrastructure

* FIX: Spacing
sappelhoff added a commit that referenced this pull request Oct 21, 2022
* avoid creating many Annotations objects in for loop (#1079)

* ENH: Better error message (#1080)

* ENH: Better error message

* FIX: Beautiful infrastructure

* FIX: Spacing

* ENH: Improve error message (#1081)

* ENH: Improve error message

* FIX: Use working openneuro-py

* FIX: Install

* FIX: Name

* ENH: Make suggestion (#1087)

* MRG: Enforce specification of all annotation descriptions in event_id if event_id is passed to write_raw_bids() (#1086)

* Write all annotations even if event_id was passed

* Implement new logic

* Update changelog

* Fix tests

* Style

* REL: v0.11.1

Co-authored-by: Alexandre Gramfort <[email protected]>
Co-authored-by: Eric Larson <[email protected]>
Co-authored-by: Richard Höchenberger <[email protected]>
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2 participants