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  1. RepEnrich2 RepEnrich2 Public

    RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.

    Python 36 9

  2. GINOM GINOM Public

    GINOM is a statistical framework for assessing interval overlap of multiple genomic features.

    MATLAB 4 2

  3. 3DC-Browser 3DC-Browser Public

    A visualization and annotation tool for 3D structures of chromosomes

    JavaScript 2

  4. SIMBA3D SIMBA3D Public

    Structure Inference (from) Multiscale BAyes in 3D

    Python 2 3

  5. scRNA_seq scRNA_seq Public

    Utilities scripts for the analysis of single cell transcriptomics

    Jupyter Notebook 1

  6. FISH_MDS FISH_MDS Public

    A Julia package that models 3D structures from Hi-C contact matrices

    Julia

Repositories

Showing 10 of 11 repositories
  • SenescenceGenomicArchitecture Public
    nerettilab/SenescenceGenomicArchitecture’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jun 4, 2024
  • SenGuiDe Public

    Software to generate figures in the SenGuiDe manuscript

    nerettilab/SenGuiDe’s past year of commit activity
    0 MIT 0 0 0 Updated Nov 17, 2023
  • RepEnrich2 Public

    RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.

    nerettilab/RepEnrich2’s past year of commit activity
    Python 36 9 6 1 Updated Feb 14, 2022
  • scRNA_seq Public

    Utilities scripts for the analysis of single cell transcriptomics

    nerettilab/scRNA_seq’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jun 2, 2021
  • Intro_ML_AI Public

    Introduction to Machine Learning and Artificial Intelligence

    nerettilab/Intro_ML_AI’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 9, 2021
  • SIMBA3D Public

    Structure Inference (from) Multiscale BAyes in 3D

    nerettilab/SIMBA3D’s past year of commit activity
    Python 2 BSD-3-Clause 3 0 0 Updated Sep 4, 2020
  • WPSCalc Public

    Calculates Window-Protection Score from aligned sequencing data over a given Chromosome & interval

    nerettilab/WPSCalc’s past year of commit activity
    Python 0 0 0 0 Updated Jun 18, 2019
  • GenArch Public

    GenArch software for whole genome 3D reconstruction

    nerettilab/GenArch’s past year of commit activity
    MATLAB 0 0 0 0 Updated Feb 1, 2018
  • GINOM Public

    GINOM is a statistical framework for assessing interval overlap of multiple genomic features.

    nerettilab/GINOM’s past year of commit activity
    MATLAB 4 MIT 2 0 0 Updated Dec 18, 2017
  • FISH_MDS Public

    A Julia package that models 3D structures from Hi-C contact matrices

    nerettilab/FISH_MDS’s past year of commit activity
    Julia 0 0 0 0 Updated Jan 26, 2017
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