DEMO
Folders and files
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Simulated data and example scripts for performing the analyses. Overview of simulated data: - two sets of channels (mimicking ECoG and STN signals) interacting in the high beta (20-30 Hz) band - there are simulations for three example subjects (each using a different random seed for the simulation) - for each subject, there are two sessions, one with strong connectivity (mimicking OFF therapy recordings) and one with weak connectivity (mimicking ON therapy recordings) - data is stored in the BIDS format Overview of files for analysing the simulated data: - "0_simulate_data_demo": a script for simulating the demo data; note that this does not need to be run as the simulated data is already included, however the script is provided for transparency - "1_data_preprocessing_preset_demo": an example preprocessing script (similar to those in the "processing" folder) with filepaths and settings filled in - "2_data_processing_coh_preset_demo": an example processing script (similar to those in the "processing" folder) with filepath and settings filled in - "3_analyse_results_demo": an example analysis script (similar to those in the "analysis" folder) with filepaths and settings filled in - "4_plot_results_demo": an example plotting notebook (similar to those in the "plotting" folder) with code for plotting the simulated imaginary coherency To check reproducibility, an image "Demo_ImCoh.png" is also present which should be treated as an expected output and used to compare the results of the above files. Running all the demo files should not take more than a few minutes.