INSTALL.md

Installing software to build & test this book

Create conda environment with base software

mamba create -n mdbook -y rust snakemake-minimal pandas sourmash

and activate:

mamba activate mdbook

Clone the repository

cd ~/
git clone https://github.com/ngs-docs/2023-snakemake-book-draft
cd 2023-snakemake-book-draft

Install mdbook & plugins:

We use mdbook as well as mdbook-admonish and mdbook-cmdrun.

cargo install mdbook mdbook-admonish mdbook-cmdrun

Build book

make

Run snakemake tests

make test