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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>NRNB: People</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="">
<meta name="author" content="">
<!-- Le styles -->
<link href="assets/css/bootstrap.css" rel="stylesheet">
<link href="assets/css/bootstrap-responsive.css" rel="stylesheet">
<link href="assets/css/nrnb.css" rel="stylesheet">
<!-- HTML5 shim, for IE6-8 support of HTML5 elements -->
<!--[if lt IE 9]>
<script src="http://html5shim.googlecode.com/svn/trunk/html5.js"></script>
<![endif]-->
<!-- Fav and touch icons -->
<link rel="shortcut icon" href="assets/ico/favicon.ico">
<link rel="apple-touch-icon-precomposed" sizes="144x144"
href="assets/ico/apple-touch-icon-144-precomposed.png">
<link rel="apple-touch-icon-precomposed" sizes="114x114"
href="assets/ico/apple-touch-icon-114-precomposed.png">
<link rel="apple-touch-icon-precomposed" sizes="72x72"
href="assets/ico/apple-touch-icon-72-precomposed.png">
<link rel="apple-touch-icon-precomposed"
href="assets/ico/apple-touch-icon-57-precomposed.png">
</head>
<body>
<div class="belt snow-shite" id="team">
<div class="container">
<h2>NRNB Team</h2>
<div class="row section">
<h3>Leadership</h3>
</div>
<div class="row">
<div class="span6">
<a class="pull-left" href="http://chianti.ucsd.edu/idekerlab/"
name="trey"> <img class="media" src="images/treyideker2.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="http://chianti.ucsd.edu/idekerlab/" target="_blank"><b>Trey
Ideker, Ph.D.</b></a> is known for pioneering work in systems biology and a
track record of innovative and widely-used bioinformatic tools. Ideker received bachelor’s
and master’s degrees in computer science from MIT and a PhD in biomedical sciences working
with Dr. Lee Hood at the University of Washington. During graduate work, he developed a general
framework for how biological systems can be systematically perturbed and modeled which laid the
foundation for many systems biology studies. Using Cytoscape, he demonstrated that biological
networks could be integrated with gene expression to systematically map pathways and aligned, like
sequences, to reveal conserved and divergent functions. He showed that the best biomarkers of
disease may not be single proteins but aggregates of proteins in networks. Most recently, his group
demonstrated that protein networks contain deep hierarchical structure that recapitulates the majority
of cellular components in the Gene Ontology (data-driven ontologies) and provides a basis for deep
learning models of cell structure and function. Ideker was named a Top Innovator by Tech Review, is
recipient of the Overton Prize from the International Society for Computational Biology and is a fellow of
the American Association for the Advancement of Science. He serves on the Editorial Boards of Cell, Cell
Systems, Molecular Systems Biology, and PLoS Comp Bio. Directing NRNB builds on leadership positions such
as Director of the UCSD Bioinformatics Program and the San Diego Center for Systems Biology, and former
Chief of Genetics in the Department of Medicine.
</p>
</div>
</div>
<div class="span6">
<a class="pull-left"
href="http://www.gladstoneinstitutes.org/scientist/pico"
name="alex" target="_blank"> <img class="media"
src="images/alexpico2.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="http://www.gladstoneinstitutes.org/scientist/pico"><b>Alexander
Pico, Ph.D.</b></a> is the Associate Director of Bioinformatics at the Gladstone Institutes
on the UCSF Mission Bay Campus where he leads a systems biology technology development group.
After obtaining a PhD in
molecular neurobiology and biophysics from Rockefeller University in 2003, Dr. Pico joined
Gladstone as a postdoctoral fellow in the laboratory of Dr. Bruce Conklin, where he lead
the development of GenMAPP and joined the Cytoscape development team. As a Senior
Staff Research Scientist, Dr. Pico develops software tools and resources that help analyze,
visualize and explore biomedical data in the context of biomolecular networks. He co-founded
WikiPathways in 2007 and has contributed to the development and leadership
of Cytoscape since 2006. Since 2007, he has organized the annual
Google Summer of Code program for Cytoscape and for NRNB starting in 2011. Dr. Pico received
the David Rockefeller Award in 2001, the Howard Hughes Medical Institute Predoctoral Fellowship
from 1999-2003, the David and the Mary Phillips Distinguished Postdoctoral Fellowship for 2005-2006.
He was recognized by Web of Science and Clarivate as a researcher "with substantial influence across
several fields" as part of Highly Cited Researchers 2018 (www.highlycited.com).
</p>
</div>
</div>
</div>
<div class="row section">
<h3>Investigators</h3>
</div>
<div class="row">
<div class="span6">
<a class="pull-left" href="http://baderlab.org" name="bader" target="_blank"> <img
class="media"
src="images/garybader2.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="http://baderlab.org" target="_blank"><b>Gary Bader, Ph.D.</b></a> works on biological network
analysis and pathway information resources as a Professor at The Donnelly Centre at the University of
Toronto. He helped found the field of network biology with early contributions to network visualization
and modeling, database resources and analysis. He was included twice (for Biology/Biochemistry
and Computer Science) on the Thomson Reuters list of most influential scientists worldwide in 2014 and
once again in 2018 (www.highlycited.com). His research focuses on identifying causal pathways in disease
and in precision medicine (predicting patient outcome based on genetic, molecular, pathway and clinical
data). For example, using his methods, his team identified novel pathways involved in autism spectrum
disorder and the first potential therapy for a devastating pediatric brain cancer. He completed
post-doctoral work in Chris Sander’s group in the Computational Biology Center at Memorial Sloan-Kettering
Cancer Center in New York. Gary developed the Biomolecular Interaction Network Database (BIND) during his
Ph.D.
</p>
</div>
</div>
<div class="span6">
<a class="pull-left"
href="http://www.sanderlab.org" name="sander" target="_blank">
<img class="media"
src="images/chrissander2.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="http://www.sanderlab.org" target="_blank"><b>Chris
Sander, Ph.D.</b></a> is director of the cBio Center in the Department of Data Sciences
at the Dana-Farber Cancer Institute, professor in the Department of Cell Biology at Harvard
Medical School, and affiliated with the Broad Institute and Ludwig Center at Harvard. Earlier,
he was founding department chair of the Biocomputing Program at the European Molecular Biology
Laboratories (EMBL) in Heidelberg and, with Michael Ashburner, co-founder of the research program
at the European Bioinformatics Institute. He was a founding member of the International Society for
Computational Biology (ISCB) and, with Gary Stormo, founding Executive Editor for the journal
Bioinformatics. In 2010 he was awarded the ISCB Accomplishment by a Senior Scientist Award.
</p>
</div>
</div>
</div>
<div class="row section">
<h3>Staff</h3>
</div>
<div class="row">
<div class="span4">
<a class="pull-left" href="http://labs.gladstone.ucsf.edu/bioinformatics/people/kristina-hanspers"
name="kristina" target="_blank"> <img class="media"
src="images/kristinahanspers2.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="http://labs.gladstone.ucsf.edu/bioinformatics/people/kristina-hanspers" target="_blank"><b>Kristina
Hanspers, M.E.</b></a> is the Outreach Coordinator for the
National Resource for Network Biology. She is a senior research
associate at the Gladstone Institute. Kristina writes and
organizes documentation, tracks NRNB activities and assists in
the preparation of the annual report.
</p>
</div>
</div>
<div class="span4">
<a class="pull-left" href="http://www.cgl.ucsf.edu/home/scooter/"
name="scooter" target="_blank"> <img class="media"
src="images/scootermorris2.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="http://www.cgl.ucsf.edu/home/scooter/" target="_blank"><b>Scooter
Morris, Ph.D.</b></a> is the Roving Engineer for the National Resource
for Network Biology and a core developer of Cytoscape. He is the
Executive Director of the <a href="http://www.rbvi.ucsf.edu/">
Resource for Biocomputing, Visualization, and Informatics</a> at
UCSF. He has created several Cytoscape apps for visualizing
diverse biological data types on networks.
</p>
</div>
</div>
<div class="span4">
<a class="pull-left" href="http://www.home.ndexbio.org/team-members/" name="dexter" target="_blank">
<img class="media"
src="images/dexter_pratt.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="http://www.home.ndexbio.org/team-members/" target="_blank"><b>Dexter Pratt, B.S.</b></a>
is the Infrastructure Guru for the National Resource for Network
Biology. He is director of the NDEx project in the Ideker Lab at UCSD.
</p>
</div>
</div>
<!--
<div class="span4">
<a class="pull-left"
href="https://sosa.ucsd.edu/confluence/display/~bdemchak/Home;jsessionid=6946EC63382994E43B564EE685173F7D" name="demchak" target="_blank">
<img class="media"
src="images/barrydemchak.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="https://sosa.ucsd.edu/confluence/display/~bdemchak/Home;jsessionid=6946EC63382994E43B564EE685173F7D"><b>Barry
Demchak, Ph.D.</b></a> is the Chief Architect for the National
Resource for Network Biology. He is also the Chief Architect and Project Manager of the
Cytoscape Project, where he leads a development team in the Ideker
Lab at UCSD. Dr Demchak is responsible for the overall architecture and development
plan for Cytoscape, including the emergence of the Cytoscape Cyberinfrastructure.
</p>
</div>
</div>
-->
</div>
</div>
</div>
<div class="belt white" id="eac">
<div class="container">
<div class="row section">
<h3>External Advisory Committee</h3>
</div>
<div class="row">
<div class="span3">
<a class="pull-left" href="https://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/index.cgi#research"
name="przytyck" target="_blank"> <img class="media"
src="images/TeresaPrzytyck.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="https://www.ncbi.nlm.nih.gov/CBBresearch/Przytycka/index.cgi#research" target="_blank">
<b>Teresa Przytycka, Ph.D.</b></a> is a Senior Investigator in the Computational Biology Branch of <a href="https://www.nlm.nih.gov/" target="_blank">NLM</a>
at the National Institutes of Health.
</p>
</div>
</div>
<div class="span3">
<a class="pull-left"
href="http://ccsb.dfci.harvard.edu/web/www/ccsb/personals/"
name="hill" target="_blank"> <img class="media"
src="images/davidhill2.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="http://ccsb.dfci.harvard.edu/web/www/ccsb/personals/" target="_blank"><b>David
Hill, Ph.D.</b></a> is Associate Director of the Harvard Center for Cancer
Systems Biology at the <a href="http://www.dana-farber.org/">Dana-Farber
Cancer Institute</a> where he is also co-leader of the Pathogen Host
Interactomes group.
</p>
</div>
</div>
<div class="span3">
<a class="pull-left" href="http://www.cs.ubc.ca/~tmm/"
name="munzner" target="_blank"> <img class="media"
src="images/tamaramunzner2.png" alt="image">
</a>
<div class="media-body">
<p>
<a href="http://www.cs.ubc.ca/~tmm/" target="_blank"><b>Tamara Munzner,
Ph.D.</b></a> is a Professor in the Department of Computer
Science at the <a href="http://www.ubc.ca/">University of
British Columbia</a> and is a member of the <a
href="http://www.cs.ubc.ca/labs/imager/imager.php" target="_blank">IMAGER</a>
Graphics, Visualization and HCI research group.
</p>
</div>
</div>
<div class="span3">
<a class="pull-left"
href="http://domino.research.ibm.com/comm/research_people.nsf/pages/gustavo.index.html"
name="stolovitzky" target="_blank"> <img class="media"
src="images/gustavostolovitzky2.png" alt="image"
>
</a>
<div class="media-body">
<p>
<a
href="http://domino.research.ibm.com/comm/research_people.nsf/pages/gustavo.index.html" target="_blank"><b>Gustavo
Stolovitzky, Ph.D.</b></a> is Manager of the Functional Genomics and
Systems Biology group at the <a
href="https://researcher.ibm.com/researcher/view_project.php?id=1080">IBM
Computational Biology Center</a>. He is a Fellow of the American
Physical Society, a Fellow of the New York Academy of Sciences,
and an adjunct Associate Professor at Columbia University.
</p>
</div>
</div>
</div>
</div>
</div>
</div>
<div class="belt white" id="partners">
<div class="container">
<div class="row">
<div class="section">
<h3>Partners and Collaborators</h3>
</div>
<div class="row belt">
<div class="span3">
<a href="http://www.gladstone.org" target="_blank"> <img
src="images/gladstone_logo_200.png"/>
</a>
</div>
<div class="span3 offset1">
<a href="http://www.ucsf.edu/" target="_blank"> <img
src="images/ucsf_logo_web.png"/>
</a>
</div>
<div class="span3 offset1">
<a href="http://www.ucsd.edu/" target="_blank"> <img
src="images/ucsd_logo_web.png"/>
</a>
</div>
</div>
<!-- SECOND ROW -->
<div class="row belt">
<div class="span3">
<a href="http://hms.harvard.edu/" target="_blank"> <img
src="images/hms_logo_web.png"/>
</a>
</div>
<div class="span3 offset1">
<a href="https://www.dana-farber.org/" target="_blank"> <img
src="images/dana_farber_logo_200.png"/>
</a>
</div>
<div class="span3 offset1">
<a href="http://www.utoronto.ca/" target="_blank"> <img
src="images/university-of-toronto_200.png"/>
</a>
</div>
</div>
<!-- THIRD ROW -->
<div class="row belt">
<div class="span3">
<a href="https://developers.google.com/open-source/soc/" target="_blank">
<img src="images/google-logo-official_200.png"/>
</a>
</div>
<div class="span3 offset1">
<a href="https://www.iu.edu/" target="_blank">
<img src="images/official-sig-iu.png"/>
</a>
</div>
<div class="span3 offset1">
<a href="https://www.ku.dk/" target="_blank">
<img src="images/ku_logo_uk_h_200.png"/>
</a>
</div>
</div>
<!-- FOURTH ROW -->
<div class="row belt">
<div class="span3">
<a href="https://cancercollaboratory.org/" target="_blank">
<img src="images/cancer_genome_collaboratory.png"/>
</a>
</div>
<div class="span3 offset1">
<a href="https://www.broadinstitute.org/" target="_blank">
<img src="images/BroadInstLogoforDigitalRGB_200.png"/>
</a>
</div>
<div class="span3 offset1">
<a href="http://geneontology.org/" target="_blank">
<img src="images/go-logo_200.png"/>
</a>
</div>
</div>
<!-- FIFTH ROW -->
<div class="row belt">
<div class="span3">
<a href="https://www.pfizer.com/" target="_blank">
<img src="images/Logo-Pfizer.png"/>
</a>
</div>
<div class="span3 offset1">
<a href="https://www.bu.edu/" target="_blank">
<img src="images/Boston_University_wordmark.png"/>
</a>
</div>
</div>
<!-- end rows -->
</div>
</div>
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