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Run problem - enzymes of my organism keeps appearing in genome column of web interface #1

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ajd542 opened this issue Nov 27, 2018 · 2 comments
Open

Run problem - enzymes of my organism keeps appearing in genome column of web interface #1

ajd542 opened this issue Nov 27, 2018 · 2 comments

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@ajd542
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ajd542 commented Nov 27, 2018

Hi there,

I have been following the EvoMining wiki tutorial and have added my genome at the end of the Genome DB. When I run the program and launch the web interface to look at the results the enzymes from my organism are appearing in the genome column. I think the issue might lie with the CONTIG_id as this has been allocated the value of 1 by RAST as it is a completely new sequence microbe. Any suggestions for trying to fix this? I can provide my data if needed. Thanks
@nselem
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nselem commented Nov 29, 2018

Hello, Yes, please if it is ok with you provide me your data, I will be glad to help you. Currently I'm working on EvoMining to also accept gbk files, but it is not yet ready. My email is [email protected]
Which data base were you using? Actinobacteria?

@nselem
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nselem commented Dec 12, 2018

I updated the tutorial please let me know if the solution worked for you!
Nelly

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@nselem @ajd542