We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
The trestletech/plumber image also sets an ENTRYPOINT, which breaks detection of installed packages:
trestletech/plumber
ENTRYPOINT
> containerit::get_installed_packages("trestletech/plumber") Detected API version '1.40' is above max version '1.39'; downgrading INFO [2019-11-12 12:29:31] Running command Rscript -e write.csv(x = as.data.frame(installed.packages())[,c("Version")]) in trestletech/plumber Detected API version '1.40' is above max version '1.39'; downgrading ARGUMENT 'Rscript' __ignored__ R version 3.6.0 (2019-04-26) -- "Planting of a Tree" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. Natural language support but running in an English locale R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > pr <- plumber::plumb(commandArgs()[4]); pr$run(host='0.0.0.0', port=8000) Error in plumber::plumb(commandArgs()[4]) : File does not exist: Rscript Execution halted
Here are a few attempts to fix that, none of them working yet:
cmd = c("Rscript", "-e", "write.csv(x = as.data.frame(installed.packages())[,c(\"Version\")])") > client$container$run(image = "trestletech/plumber", cmd = cmd, rm = TRUE, entrypoint = "/bin/bash") /usr/bin/Rscript: /usr/bin/Rscript: cannot execute binary file Error: Command 'Rscript -e write.csv(x = as.data.frame(installed.packages())[,c("Version")])' in image 'trestletech/plumber:latest' returned non-zero exit status 126 /usr/bin/Rscript: /usr/bin/Rscript: cannot execute binary file > client$container$run(image = "trestletech/plumber", cmd = cmd, rm = TRUE, entrypoint = "/bin/sh") /bin/sh: 0: Can't open Rscript Error: Command 'Rscript -e write.csv(x = as.data.frame(installed.packages())[,c("Version")])' in image 'trestletech/plumber:latest' returned non-zero exit status 127 /bin/sh: 0: Can't open Rscript > client$container$run(image = "trestletech/plumber", cmd = cmd, rm = TRUE, entrypoint = "bash") /usr/bin/Rscript: /usr/bin/Rscript: cannot execute binary file Error: Command 'Rscript -e write.csv(x = as.data.frame(installed.packages())[,c("Version")])' in image 'trestletech/plumber:latest' returned non-zero exit status 126 /usr/bin/Rscript: /usr/bin/Rscript: cannot execute binary file > client$container$run(image = "trestletech/plumber", cmd = cmd, rm = TRUE, entrypoint = "/bin/sh") /bin/sh: 0: Can't open Rscript Error: Command 'Rscript -e write.csv(x = as.data.frame(installed.packages())[,c("Version")])' in image 'trestletech/plumber:latest' returned non-zero exit status 127 /bin/sh: 0: Can't open Rscript > client$container$run(image = "trestletech/plumber", cmd = c("Rscript", "-e", "sessionInfo()"), rm = TRUE, entrypoint = "/bin/sh") /bin/sh: 0: Can't open Rscript Error: Command 'Rscript -e sessionInfo()' in image 'trestletech/plumber:latest' returned non-zero exit status 127 /bin/sh: 0: Can't open Rscript > client$container$run(image = "trestletech/plumber", cmd = c("Rscript -e 'sessionInfo()'"), rm = TRUE, entrypoint = "/bin/sh") /bin/sh: 0: Can't open Rscript -e 'sessionInfo()' Error: Command 'Rscript -e 'sessionInfo()'' in image 'trestletech/plumber:latest' returned non-zero exit status 127 /bin/sh: 0: Can't open Rscript -e 'sessionInfo()'
The text was updated successfully, but these errors were encountered:
No branches or pull requests
The
trestletech/plumber
image also sets anENTRYPOINT
, which breaks detection of installed packages:Here are a few attempts to fix that, none of them working yet:
The text was updated successfully, but these errors were encountered: