Repositories list

• FunAnnotationCommon

  Public
  Funannotate quick annotation

  Shell

  •0•0•0•0•Updated Sep 18, 2024Sep 18, 2024

• NCBI_fungi

  Public
  Download NCBI fungi and process for stats

  Python

  •0•0•0•0•Updated Aug 18, 2024Aug 18, 2024

• 1kfg_phylo_paper

  Public
  1000 Fungal Genomes Phylogeny and phylogenomics paper

  Shell

  •1•0•0•0•Updated Dec 13, 2023Dec 13, 2023

• 1kfg.github.io

  Public
  1000 Fungal Genomes Project

  SCSS

  •

  BSD 3-Clause "New" or "Revised" License

  •315•0•0•0•Updated Mar 17, 2023Mar 17, 2023

• 2019_dataset

  Public
  Try again creating frozen dataset

  Python

  •0•0•0•0•Updated Mar 23, 2021Mar 23, 2021

• PHYling_HMMs_fungi

  Public
  PHYling HMM datasets for Fungi

  MIT License

  •0•0•0•0•Updated May 18, 2020May 18, 2020

• Phylogenomics_HMMs

  Public
  HMMs for Phylogenomics projects

  MIT License

  •1•0•0•0•Updated Sep 11, 2018Sep 11, 2018

• Phylogenomics

  Public
  Phylogenomics analyses for 1KFG project

  bioinformaticscomparative-genomicsphylogenomics

  Shell

  •

  MIT License

  •0•6•0•0•Updated Nov 16, 2017Nov 16, 2017

• analyses

  Public
  1KFG analyses

  Shell

  •0•1•0•0•Updated Jul 3, 2017Jul 3, 2017

• genome_stats

  Public
  Summary Statistics about fungal genomes

  Perl

  •2•3•0•0•Updated May 16, 2017May 16, 2017

• Freeze1_Phylogenomics

  Public
  Freeze of 351 genome set for first 1KFG genome paper

  0•0•0•0•Updated Jan 16, 2017Jan 16, 2017

• genome_sizes

  Public
  Fungal Genome Sizes

  R

  •

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Oct 31, 2016Oct 31, 2016

• annotate_genomes

  Public
  Genome annotation for unannotated projects

  Shell

  •0•1•1•0•Updated Jul 25, 2016Jul 25, 2016

• AFTOL_resources

  Public
  Resources related to AFTOL1 and AFTOL2 projects

  MIT License

  •1•1•0•0•Updated Jul 19, 2015Jul 19, 2015

• outgroups

  Public
  Outgroups genomes and data

  0•0•0•0•Updated Jun 3, 2015Jun 3, 2015