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    653 repositories

    • schematic

      Public
      Package for biomedical data model and metadata ingress management
      schemabiomedical-informaticsdata-ingress
      Python
      •
      MIT License
      •26•22•0•10•Updated Nov 23, 2024Nov 23, 2024

    • genie-bpc-bladder-landscape-manu

      Public
      Analyses related to the GENIE BPC Bladder cohort. Intended for a landscape manuscript.
      R
      •0•0•0•0•Updated Nov 23, 2024Nov 23, 2024

    • snowflake

      Public
      Snowflake Administration, Transformations, and Analytics
      snowflake
      Python
      •
      Apache License 2.0
      •4•4•0•3•Updated Nov 23, 2024Nov 23, 2024

    • Genie

      Public
      Validation and processing of GENIE files
      pythonetlgeniedpecomponc
      Python
      •
      MIT License
      •9•12•1•3•Updated Nov 23, 2024Nov 23, 2024

    • agora-data-tools

      Public
      A place for Agora's ETL and Data Testing
      Jupyter Notebook
      •
      Apache License 2.0
      •3•1•0•2•Updated Nov 23, 2024Nov 23, 2024

    • genie-bpc-drug-off-label

      Public
      Repository for the code relating to off-label and off-guideline use of drugs in the BPC data.
      R
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • recover

      Public
      A data pipeline for processing data from the RECOVER project.
      Python
      •
      Apache License 2.0
      •1•5•0•0•Updated Nov 22, 2024Nov 22, 2024

    • SynapseWebClient

      Public
      The web client of the Synapse REST service core
      JavaScript
      •
      Apache License 2.0
      •37•23•1•6•Updated Nov 22, 2024Nov 22, 2024

    • synapse-web-monorepo

      Public
      Monorepo for Synapse Web projects
      TypeScript
      •23•5•3•27•Updated Nov 22, 2024Nov 22, 2024

    • Synapse-Stack-Builder

      Public
      Project for building a complete Synapse Stack
      Java
      •
      Apache License 2.0
      •19•5•0•0•Updated Nov 22, 2024Nov 22, 2024

    • sage-monorepo

      Public
      Where OpenChallenges, Schematic, and other Sage open source apps are built
      angularopenapischematicmonorepofull-stackfairdeveloper-experiencenxagoraspecification-first
      TypeScript
      •
      Apache License 2.0
      •12•23•152•4•Updated Nov 22, 2024Nov 22, 2024

    • porTools

      Public
      This package helps maintain content in Sage portals.
      R
      •4•0•5•1•Updated Nov 22, 2024Nov 22, 2024

    • Synapse-Repository-Services

      Public
      The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
      Java
      •
      Apache License 2.0
      •53•36•0•5•Updated Nov 22, 2024Nov 22, 2024

    • core-models

      Public
      Sage repository for data models and core models work
      Python
      •1•0•3•0•Updated Nov 22, 2024Nov 22, 2024

    • BridgeServer2

      Public
      Bridge Server 2.0 running on Spring Boot
      Java
      •
      Other
      •22•5•0•1•Updated Nov 21, 2024Nov 21, 2024

    • genie-project-requests

      Public
      Stand-alone scripts for quick checks or tasks for GENIE
      genie
      R
      •
      MIT License
      •1•0•0•0•Updated Nov 21, 2024Nov 21, 2024

    • Exceptional-Longevity

      Public
      Repository to store scripts for data curation and backend portal drivers for the ELITE Portal.
      R
      •0•1•0•0•Updated Nov 19, 2024Nov 19, 2024

    • schematic-infra

      Public
      CDK-based template for deploying a containerized application to AWS
      Python
      •5•0•0•2•Updated Nov 19, 2024Nov 19, 2024

    • governanceDUO

      Public
      1•0•0•1•Updated Nov 18, 2024Nov 18, 2024

    • Synapse-ETL-Jobs

      Public
      Synapse ETL jobs project will be maintaining all the ETL jobs for Synapse
      Python
      •5•0•0•0•Updated Nov 18, 2024Nov 18, 2024

    • synapse-docker-registry

      Public
      ECS deployment for the Synapse Docker registry
      Python
      •2•0•0•0•Updated Nov 17, 2024Nov 17, 2024

    • GENIE-Sponsored-Projects

      Public
      This repository contains processing code for GENIE sponsored projects used for creating cBioPortal files
      genie
      Python
      •
      MIT License
      •1•5•5•3•Updated Nov 16, 2024Nov 16, 2024

    • data_curator_config

      Public
      Project configurations for the Data Curator App
      19•2•0•0•Updated Nov 14, 2024Nov 14, 2024

    • service-catalog-library

      Public
      Library of service catalog templates
      scipool
      Apache License 2.0
      •9•0•0•1•Updated Nov 14, 2024Nov 14, 2024

    • data_curator-infra

      Public
      CDK-based template for deploying a containerized application to AWS
      Python
      •6•1•0•0•Updated Nov 14, 2024Nov 14, 2024

    • synapser

      Public
      An R package providing programmatic access to Synapse
      rsynapse
      R
      •
      Apache License 2.0
      •22•32•7•1•Updated Nov 13, 2024Nov 13, 2024

    • genie-bpc-pipeline

      Public
      GENIE BPC pipeline scripts
      genie
      R
      •
      MIT License
      •1•2•0•5•Updated Nov 13, 2024Nov 13, 2024

    • data_curator

      Public
      Data and metadata ingress app
      R
      •
      Apache License 2.0
      •21•10•49•1•Updated Nov 13, 2024Nov 13, 2024

    • sage-otel-collector

      Public archive
      Simple storage for a custom opentelemetry collector image for deploying an opentelemetry collector to AWS ECS
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Nov 13, 2024Nov 13, 2024

    • ADPortalWorkshops

      Public
      Materials and planning for AD Knowledge Portal user workshops
      JavaScript
      •14•1•0•0•Updated Nov 12, 2024Nov 12, 2024