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@SynBioDex Synthetic Biology Data Exchange Group

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    55 repositories

    • pySBOL2

      Public
      A pure Python implementation of the SBOL standard.
      Python
      •
      Apache License 2.0
      •7•21•29•1•Updated Feb 13, 2025Feb 13, 2025

    • tyto

      Public
      Use ontology terms in your Python application
      Python
      •
      Apache License 2.0
      •4•19•22•0•Updated Feb 13, 2025Feb 13, 2025

    • pySBOL3

      Public
      Native python implementation of SBOL 3.0 specification
      Python
      •
      MIT License
      •16•37•45•1•Updated Feb 13, 2025Feb 13, 2025

    • Excel-utilities

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•5•1•Updated Feb 12, 2025Feb 12, 2025

    • SBOLCanvas

      Public
      HTML
      •
      Apache License 2.0
      •6•12•25•0•Updated Feb 9, 2025Feb 9, 2025

    • Excel-to-SBOL

      Public
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•4•25•0•Updated Feb 7, 2025Feb 7, 2025

    • SBOL-Notebooks

      Public
      A repository containing Jupyter Notebooks for SBOL
      Jupyter Notebook
      •0•0•17•3•Updated Feb 4, 2025Feb 4, 2025

    • SbolStandardWebsite

      Public
      TeX
      •
      Creative Commons Zero v1.0 Universal
      •3•4•12•0•Updated Feb 4, 2025Feb 4, 2025

    • SBOL-examples

      Public
      A repository to share/discuss/ask/propose how to represent examples using SBOL and SBOLVisual.
      Jupyter Notebook
      •
      Apache License 2.0
      •4•3•16•1•Updated Jan 30, 2025Jan 30, 2025

    • SBOL-Validator

      Public
      A web application to validate SBOL files
      pythonflasksynthetic-biologystandardssbol
      HTML
      •
      Apache License 2.0
      •3•8•15•2•Updated Dec 24, 2024Dec 24, 2024

    • SBOLExplorer

      Public
      synthetic-biology
      UnrealScript
      •
      MIT License
      •2•4•22•7•Updated Nov 13, 2024Nov 13, 2024

    • Xperimental-Data-Connector

      Public
      XDC uses excel2flapjack and excel2sbol and interlinks the data
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •8•2•6•0•Updated Nov 7, 2024Nov 7, 2024

    • Community-Media

      Public
      This repository is intended to be a "one stop" location for finding all of the publicly presented papers, posters, and talks that have been given on SBOL.
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •14•9•3•0•Updated Nov 4, 2024Nov 4, 2024

    • Xperimental-Data-Connector-Server

      Public
      This runs a submission to flapjack and synbiohub from an excel file
      HTML
      •
      BSD 3-Clause "New" or "Revised" License
      •2•0•3•2•Updated Oct 24, 2024Oct 24, 2024

    • SBOL-utilities

      Public
      Command-line utilities and scripts for manipulating SBOL data
      JavaScript
      •
      MIT License
      •26•16•109•11•Updated Sep 3, 2024Sep 3, 2024

    • SBOL-Devs

      Public
      SBOL Devs repository, a place to plan the software development that SBOL needs.
      MIT License
      •0•1•0•0•Updated Aug 8, 2024Aug 8, 2024

    • Excel-to-Flapjack

      Public
      Jupyter Notebook
      •1•0•0•1•Updated Apr 26, 2024Apr 26, 2024

    • libSBOLj3

      Public
      A Java library for the Synthetic Biology Open Language version 3
      Java
      •
      Apache License 2.0
      •3•1•0•0•Updated Apr 9, 2024Apr 9, 2024

    • hugo-blox-builder

      Public
      Hugo Academic - Theme
      HTML
      •
      MIT License
      •2.9k•0•0•0•Updated Mar 19, 2024Mar 19, 2024

    • sboljs3

      Public
      A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js
      bioinformaticsbiologysbolsynbio
      TypeScript
      •1•6•16•0•Updated Jul 3, 2023Jul 3, 2023

    • SEPs

      Public
      SBOL Enhancement Proposals
      Python
      •16•11•5•0•Updated May 5, 2023May 5, 2023

    • SBOLTestSuite

      Public
      Java
      •10•6•9•3•Updated Apr 28, 2023Apr 28, 2023

    • SBOL-specification

      Public
      The Synthetic Biology Open Language (SBOL)
      TeX
      •9•16•14•0•Updated Apr 25, 2023Apr 25, 2023

    • SBOL-visual

      Public
      The reference implementation of the SBOL Visual standard
      HTML
      •
      Other
      •16•33•25•0•Updated Mar 20, 2023Mar 20, 2023

    • .github

      Public
      1•0•0•0•Updated Jan 25, 2023Jan 25, 2023

    • activity-summaries

      Public
      HTML
      •0•0•0•0•Updated Jan 25, 2023Jan 25, 2023

    • SBOL_website

      Public archive
      Repository for documenting issues with the SBOL website at http://www.sbolstandard.org/
      0•2•16•0•Updated Jan 12, 2023Jan 12, 2023

    • sbol_factory

      Public
      The SBOLFactory provides a mechanism for automatically generating an interactive, object-oriented API from a declarative data model specification encoded in OWL.
      Python
      •
      MIT License
      •3•6•16•1•Updated Jan 12, 2023Jan 12, 2023

    • dnaplotlib2

      Public
      DNA plotting library for Python
      Python
      •
      MIT License
      •1•1•1•1•Updated Dec 8, 2022Dec 8, 2022

    • libSBOLj

      Public
      Java Library for Synthetic Biology Open Language (SBOL)
      Java
      •
      Apache License 2.0
      •24•38•64•7•Updated Nov 6, 2022Nov 6, 2022