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Issues: oushujun/EDTA

How to install EDTA?
#497 by zyy36920 was closed Oct 7, 2024
Closed 8
How to run EDTA in large genomes (>10Gb)?
#61 by benedictcoombes was closed Apr 19, 2021
Closed 21
TEanno.sum generation
#169 by wyim-pgl was closed Apr 2, 2021
Closed 1
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Issues list

EDTA 2.2 stalling early in LTR discovery
#519 opened Nov 13, 2024 by Chriswinefield
2
ERROR: Raw TIR results not found in sample_ragtag.fa.mod.EDTA.raw/sample_ragtag.fa.mod.TIR.intact.raw.fa
#518 opened Nov 10, 2024 by wangguiqian
3
Test is failing after install
#517 opened Nov 2, 2024 by etwatson
4
error in Identify TIR candidates
#516 opened Nov 1, 2024 by qfh20m20m
2
LAI values could not be calculated
#515 opened Nov 1, 2024 by sunshichao0916
3
No chromosome_density_plots.pdf
#514 opened Oct 23, 2024 by bijendrabio
4
Request for Software Recommendations for Protein Annotation
#513 opened Oct 22, 2024 by Flooooooooooooower
Error with add -w $genome_file_real_path.EDTA.raw/TIR
#512 opened Oct 22, 2024 by lpzoaa
@lutianyu2001
can't find LTR and NO SINE on Split Genome
#510 opened Oct 11, 2024 by rr9002
1
NO SINE,EDTA v2.2.0
#509 opened Oct 9, 2024 by Apl-cc
9
Chr9 of Rice(NIP) 4M do not have TE ?
#508 opened Sep 23, 2024 by GooLey1025
2
Error: Error while loading sequence perl filter_gff3.pl file.gff3 file.list > new.gff3
#506 opened Sep 20, 2024 by huaixiaolu
1
EDTA_2.2.x.yml relies on anaconda channel
#500 opened Aug 26, 2024 by SwiftSeal
4
combine_RMrows.pl erro
#498 opened Aug 26, 2024 by jwli-code
1
gff2bed.pl doesn't recognize "snRNA" repeat class; leads to an empty .sum file
#494 opened Aug 20, 2024 by malia-is-a-squid
1
unknown/NA not found in the TE_SO database, it will not be used to rename sequences in the final annotation.
#493 opened Aug 17, 2024 by jwli-code
An error when running ‘test’, probably related to 'bedtools'
#489 opened Aug 5, 2024 by liangchengbo
17
When I run PanEDTA, it seems to rerun EDTA from scratch for each chromosome instead of starting the merging process directly.
#487 opened Jul 23, 2024 by dongaoqian
How to identify the structure feature of a TE sequence question Further information is requested
#486 opened Jul 22, 2024 by leon945945
1
Warning: LOC list - is empty
#483 opened Jul 19, 2024 by wangyangXie
7
Repeat masker stalling question Further information is requested
#480 opened Jul 10, 2024 by yanarizzieri
3
CrossmatchSearchEngine::parseOutput issue
#479 opened Jul 9, 2024 by cai1991
5
Same ID for LTR-RT _LTR and _INT families in panEDTA
#477 opened Jul 3, 2024 by lanasushko
Can I concatenate EDTA library and Repbase library manually?
#472 opened Jun 20, 2024 by Marh32
1
several issues in the ruuning of EDTA2
#466 opened May 22, 2024 by yanyew
1
ProTip! Updated in the last three days: updated:>2024-11-20.