pytest.yml

name: Tests

on:
  push:
    branches:
      - master
      - development
  pull_request:
    branches:
      - master
      - development

jobs:
  test:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-22.04, windows-2019]
        python-version: [3.11.9]
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v5
      with:
        python-version: ${{ matrix.python-version }}
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install -r requirements.txt
        pip install -r requirements_extra.txt
        pip install pytest pytest-cov topacedo anndata pcst_fast
    - name: Test with pytest
      run: |
        pytest --cov=.
    - name: Upload coverage to Codecov
      uses: codecov/codecov-action@v3
      with:
        fail_ci_if_error: false