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defaults.json
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defaults.json
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{
"space": {
"Lx": {
"default": 1.0,
"doc": "Domain length along x",
"type": "float"
},
"Ly": {
"default": 1.0,
"doc": "Domain length along y",
"type": "float"
},
"theta": {
"default": [
0,
6.283185307179586
],
"doc": "Range of azymuth for cylindrical coordinates. Range of latitude for spherical coordinates",
"type": "list"
},
"lat_pole_shift": {
"default": 0.0,
"doc": "Meridional angle shift for the North Pole. Controls the Coriolis parameter",
"type": "float"
},
"r": {
"default": [
0.5,
2
],
"doc": "Range of radius for cylindrical coordinates",
"type": "list"
},
"coordinates": {
"default": "cartesian",
"doc": "type of coordinates",
"avail": "cartesian, cylindrical",
"type": "str"
},
"partialcell": {
"default": false,
"doc": "Activate the partial cell",
"type": "bool"
},
"openbc": {
"default": false,
"doc": "Deactivate the periodicity in the halo",
"type": "bool"
},
"barotropicfilter": {
"default": false,
"doc": "if set apply the barotropic filtering",
"type": "bool"
},
"geometry": {
"avail": "closed, perio_x, perio_y, perio_xy",
"default": "closed",
"doc": "Domain geometry",
"type": "str"
},
"nx": {
"default": 128,
"doc": "Number of gridpoints in x direction in the local subdomain",
"type": "int"
},
"ny": {
"default": 128,
"doc": "Number of gridpoints in y direction in the local subdomain",
"type": "int"
},
"nz": {
"default": 1,
"doc": "Number of layers",
"type": "int"
},
"npx": {
"default": 1,
"doc": "Number of subdomains in x",
"type": "int"
},
"npy": {
"default": 1,
"doc": "Number of subdomains in y",
"type": "int"
},
"npz": {
"default": 1,
"doc": "Number of subdomains in z. It has to be 1",
"type": "int"
}
},
"numerics": {
"nh": {
"default": 3,
"doc": "Number of ghost points in the halo",
"type": "int"
},
"timestepping": {
"avail": "EF, LF, Heun, RK3_SSP, AB2, AB3, RK4_LS",
"default": "RK3_SSP",
"doc": "Time scheme",
"type": "str"
},
"VF_linear": {
"default": false,
"doc": "Use linear interpolation on the vorticity flux",
"type": "bool"
},
"VF_order": {
"default": 5,
"doc": "Interpolation order for the vorticity flux",
"avail": "1, 3, 5",
"type": "int"
},
"MF_linear": {
"default": false,
"doc": "Use linear interpolation on the mass flux",
"type": "bool"
},
"MF_order": {
"default": 5,
"doc": "Interpolation order for the mass flux",
"avail": "1, 3, 5",
"type": "int"
}
},
"output": {
"expname": {
"default": "myexp",
"doc": "Name of the experiment used in the name of the output directory and output files",
"avail": "any valid filename(avoid white spaces)",
"type": "str"
},
"datadir": {
"default": "~/data/pyRSW",
"avail": "any valid path(existent or not) with write access",
"doc": "Folder in which the output files of the simulation are stored",
"type": "str"
},
"filemode": {
"default": "overwrite",
"avail": "overwrite, count, continue",
"doc": "Handling of existing output files with the same name",
"type": "str"
},
"physicalunits": {
"default": true,
"doc": "Transform model native units into physical units",
"type": "bool"
},
"halo_included": {
"default": false,
"doc": "Whether to store the arrays with the halo or not",
"type": "bool"
},
"restart": {
"default": false,
"doc": "Whether to use restarts, if activated, the first batch will use the user initial conditions and write a restart at thend, then when relaunched, the model will start from this last restart.",
"type": "bool"
},
"singlefile": {
"default": true,
"doc": "Whether to write a single history file or one per core",
"type": "bool"
},
"freq_diag": {
"default": 0.05,
"doc": "Interval of time between two outputs in the diag file",
"type": "float"
},
"freq_his": {
"default": 10.0,
"doc": "Interval of time between two outputs in the history file",
"type": "float"
},
"nprint": {
"default": 20,
"doc": "Numer of time steps between two prints",
"type": "int"
},
"var_to_save": {
"default": [
"h",
"u",
"vor",
"pv"
],
"doc": "List of variables names that we want to output in the history file. The variables names have to be consistent with the model",
"type": "str"
},
"hisdtype": {
"default": "f",
"doc": "Numpy dtype for float in the netCDF file. See np.typecodes",
"avail": "efdg",
"type": "str"
}
},
"physics": {
"g": {
"default": 1.0,
"doc": "Acceleration of gravity",
"type": "float"
},
"f0": {
"default": 1.0,
"doc": "Coriolis parameter",
"type": "float"
},
"rho": {
"default": 1.0,
"doc": "Density of each layer",
"type": "list"
},
"H": {
"default": 1.0,
"doc": "Thickness of each layer",
"type": "list"
},
"linear": {
"default": false,
"doc": "If True use the linearized equations",
"type": "bool"
},
"forcing": {
"default": false,
"doc": "Activate a forcing. Needs to provide the name of the forcing routine",
"type": "bool"
},
"noslip": {
"default": false,
"doc": "Add a noslip condition along the boundaries",
"type": "bool"
}
},
"plotting options": {
"cmap": {
"avail": "needs to be in the pyplot list",
"default": "RdBu_r",
"doc": "Set the colormap",
"type": "str"
},
"colorscheme": {
"avail": "auto, imposed",
"default": "auto",
"doc": "Method to adjust the colorscale",
"type": "str"
},
"cax": {
"default": [
-1.0,
1.0
],
"doc": "min, max values for the color range",
"type": "list"
},
"freq_plot": {
"default": 1,
"doc": "Number of iterations between two plotting refresh",
"type": "int"
},
"generate_mp4": {
"default": false,
"doc": "Generate a mp4 video file on the fly",
"type": "bool"
},
"plotlayer": {
"default": 0,
"doc": "Index of the layer to plot",
"type": "int"
},
"plotvar": {
"default": "h",
"doc": "Name of the variable to plot",
"avail": "h, u, vor, pv, p, ke",
"type": "str"
},
"imshow_interpolation": {
"avail": "nearest, bilinear",
"default": "nearest",
"doc": "Interpolation scheme for the imshow rendering",
"type": "str"
},
"plot_type": {
"avail": "imshow, pcolormesh",
"default": "imshow",
"doc": "Type of interactive plot, imshow or pcolormesh",
"type": "str"
},
"plot_interactive": {
"default": true,
"doc": "Set on the interactive plotting. Turn it off to speed up the computation",
"type": "bool"
},
"plotting_module": {
"avail": "a_user_file_name",
"default": "plotting",
"doc": "Give the name of your plotting module(python script). It should look like core/plotting.py",
"type": "str"
}
},
"time": {
"cfl": {
"default": 0.5,
"doc": "Desired cfl that sets the time step in the case of auto_dt",
"type": "float"
},
"auto_dt": {
"default": false,
"doc": "Whether to use a varying time step or a constant one",
"type": "bool"
},
"dt_max": {
"default": 0.01,
"doc": "Maximum time step to use (for the auto_dt case)",
"type": "float"
},
"dt": {
"default": 0.01,
"doc": "Time step to use when it is constant",
"type": "float"
},
"tend": {
"default": 1.0,
"doc": "Integration time",
"type": "float"
},
"duration": {
"default": 1.0,
"doc": "Integration time",
"type": "float"
},
"timeunit": {
"default": 1.0,
"doc": "Time unit, used to print the results",
"type": "float"
}
}
}