diff --git a/doc/whatsnew/fragments/9883.bugfix b/doc/whatsnew/fragments/9883.bugfix
new file mode 100644
index 0000000000..51a1a935c0
--- /dev/null
+++ b/doc/whatsnew/fragments/9883.bugfix
@@ -0,0 +1,3 @@
+Fix to address indeterminacy of error message in case a module name is same as another in a separate namespace.
+
+Refs #9883
diff --git a/pylint/lint/pylinter.py b/pylint/lint/pylinter.py
index eff15cc444..dce95e0036 100644
--- a/pylint/lint/pylinter.py
+++ b/pylint/lint/pylinter.py
@@ -666,10 +666,12 @@ def check(self, files_or_modules: Sequence[str]) -> None:
                 )
 
         extra_packages_paths = list(
-            {
-                discover_package_path(file_or_module, self.config.source_roots)
-                for file_or_module in files_or_modules
-            }
+            dict.fromkeys(
+                [
+                    discover_package_path(file_or_module, self.config.source_roots)
+                    for file_or_module in files_or_modules
+                ]
+            ).keys()
         )
 
         # TODO: Move the parallel invocation into step 3 of the checking process
diff --git a/tests/functional/r/recursion/recursion_error_3152.py b/tests/functional/r/recursion/recursion_error_3152.py
index 97ec190e8f..2d7de55079 100644
--- a/tests/functional/r/recursion/recursion_error_3152.py
+++ b/tests/functional/r/recursion/recursion_error_3152.py
@@ -2,6 +2,6 @@
 import setuptools
 
 
-# pylint: disable=missing-docstring,too-few-public-methods
+# pylint: disable=missing-docstring,too-few-public-methods,abstract-method
 class Custom(setuptools.Command):
     pass