Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Error in build_cutout for Ukraine #669

Open
2 tasks done
Eddy-JV opened this issue Apr 4, 2023 · 6 comments
Open
2 tasks done

Error in build_cutout for Ukraine #669

Eddy-JV opened this issue Apr 4, 2023 · 6 comments
Labels
bug Something isn't working

Comments

@Eddy-JV
Copy link
Collaborator

Eddy-JV commented Apr 4, 2023

Checklist

  • I am using the current main branch or the latest release. Please indicate.
  • I am running on an up-to-date pypsa-earth environment. Update via conda env update -f envs/environment.yaml.

Describe the Bug

  • When running the following full workflow for Ukraine: snakemake -j 8 solve_all_networks, I get the first shown error below when building_cutout.py. The problem comes when saving the cutout.nc file. Then the workflow freezes at step 3 of 15 with @(20%).

  • Previously to that, I get also a Runtimewarning when executing build_shapes.py. The warning is shown below in the second bash window. Could that be the source of the problem?

N.B.: The only changes to the config.yaml file are:

  1. Country to 'UA'
  2. build_cutout: true

Error Message

If applicable, paste any terminal output to help illustrating your problem.
In some cases it may also be useful to share your list of installed packages: conda list.

INFO:atlite.datasets.era5:CDS: Downloading variables                                                                                                                                                    
         * geopotential (2013)

[########################################] | 100% Completed | 14.97 ss                                                                                                                                  
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 476 in H5O__attr_open_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #006: H5Adense.c line 394 in H5A__dense_open(): can't locate attribute in name index
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 476 in H5O__attr_open_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #006: H5Adense.c line 394 in H5A__dense_open(): can't locate attribute in name index
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 476 in H5O__attr_open_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #006: H5Adense.c line 394 in H5A__dense_open(): can't locate attribute in name index
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 476 in H5O__attr_open_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #006: H5Adense.c line 394 in H5A__dense_open(): can't locate attribute in name index
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 476 in H5O__attr_open_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #006: H5Adense.c line 394 in H5A__dense_open(): can't locate attribute in name index
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 476 in H5O__attr_open_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #006: H5Adense.c line 394 in H5A__dense_open(): can't locate attribute in name index
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitGroomNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeGranularBitRoundNumberOfSignificantDigits'
    major: Attribute
    minor: Object not found
HDF5-DIAG: Error detected in HDF5 (1.12.2) thread 1:
  #000: H5A.c line 528 in H5Aopen_by_name(): can't open attribute
    major: Attribute
    minor: Can't open object
  #001: H5VLcallback.c line 1091 in H5VL_attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #002: H5VLcallback.c line 1058 in H5VL__attr_open(): attribute open failed
    major: Virtual Object Layer
    minor: Can't open object
  #003: H5VLnative_attr.c line 130 in H5VL__native_attr_open(): can't open attribute
    major: Attribute
    minor: Can't open object
  #004: H5Aint.c line 545 in H5A__open_by_name(): unable to load attribute info from object header
    major: Attribute
    minor: Unable to initialize object
  #005: H5Oattribute.c line 494 in H5O__attr_open_by_name(): can't locate attribute: '_QuantizeBitRoundNumberOfSignificantBits'
    major: Attribute
    minor: Object not found
[Tue Apr  4 14:19:42 2023]
INFO:snakemake.logging:[Tue Apr  4 14:19:42 2023]
Finished job 12.
INFO:snakemake.logging:Finished job 12.
3 of 15 steps (20%) done
INFO:snakemake.logging:3 of 15 steps (20%) done
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
/opt/local/software/PyPSA-earth/0.1.0/lib/python3.10/site-packages/shapely/set_operations.py:133: RuntimeWarning: invalid value encountered in intersection
  return lib.intersection(a, b, **kwargs)
@Eddy-JV Eddy-JV added the bug Something isn't working label Apr 4, 2023
@Eddy-JV
Copy link
Collaborator Author

Eddy-JV commented Apr 4, 2023

@ekatef Hazem conveyed that you might solve this issue easily.

@ekatef
Copy link
Member

ekatef commented Apr 4, 2023

Hi @Eddy-JV, previously we had some geometry-related issues but they all are (hopefully :) ) fixed now. The error you are experiencing has not been seen yet. Thanks a lot for reporting!

My feeling is that it can be caused by some dependencies conflict as state this and this SO threads. I'd suggest to build a fresh environment to be sure that it doesn't contain any potentially conflicting dependencies. (Be sure please to keep your current environment as a back-up)

@hazemakhalek
Copy link
Collaborator

Hi @ekatef, I was encountered a similar problem with my environment when runing the workflow for Ukraine. It's working for me for other countries. Also, I believe Eddy re installed a fresh environment today and the issue was not solved.. Maybe @davide-f has seen this issue before?

@davide-f
Copy link
Member

davide-f commented Apr 4, 2023

That's surprising.

I've run it for the world recently with no problems.
Some comments:

  • may you find some RAM limitations? How much RAM do you have?
  • may be worth specifying the range of the cutout explicitly to see if that problem is repeatable. You can do by decommenting and adapting these two lines

@ekatef
Copy link
Member

ekatef commented May 5, 2023

Update: the same issue appears for different areas of the world (Oceania and Nigeria, for example) and can be fixed by downgrade of netcdf4 as suggested in this SO answer, like netcdf4<1.6.0.

Generally, such HDF5-DIAG warnings are known in the upstream packages (e.g. there is a discussion in this xarray issue) and are being fixed now. So, the issue we are facing can be probably resolved soon thanks to this work

@Tomkourou Tomkourou mentioned this issue May 30, 2023
Closed
@davide-f
Copy link
Member

Is this still relevant? we should have earth coverage and packages have improved right?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug Something isn't working
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
4 participants
@ekatef @davide-f @Eddy-JV @hazemakhalek