Build fails for sphinx=6.2.1, claiming "requires docutils >=0.18.1,<0.20, but none of the providers can be installed"

[michaelweinold]

Details

• Read the Docs project URL: https://readthedocs.org/projects/brightway-documentation/
• Build URL (if applicable): https://readthedocs.org/projects/brightway-documentation/builds/21130710/
• Read the Docs username (if applicable): https://readthedocs.org/profiles/michaelweinold/

Expected Result

No issues - if I create the environment locally using conda env create -f environment.yml, I don't get any errors either. My environment file:

name: sphinx
channels:
  - conda-forge
  - nodefaults
dependencies:
  # core functionality
  - python=3.11
  - ipython
  # sphinx
  - sphinx=6.2.1 # sphinx-design currently requires sphinx[version>=2,<5] # https://github.com/sphinx-doc/sphinx/releases
  # theme and extensions
  - pydata-sphinx-theme=0.13.3 # website theme # https://github.com/pydata/pydata-sphinx-theme/releases
  - myst-parser=2.0.0 # Markdown support # https://github.com/executablebooks/MyST-Parser/releases
  - nbsphinx=0.9.2 # Jupyter notebook support # https://github.com/spatialaudio/nbsphinx/releases
  - sphinx-autoapi=2.1.0 # to build docs from source code instead of package import # https://github.com/readthedocs/sphinx-autoapi/tags
  - sphinx-design=0.4.1 # responsive web component support # https://github.com/executablebooks/sphinx-design/releases
  - sphinx-notfound-page=0.8.3 # custom 404 page # https://github.com/readthedocs/sphinx-notfound-page/tags
  - graphviz=8.0.5 # for plotting dependency diagrams with sphinx-autoapi # https://anaconda.org/conda-forge/graphviz/files
  - sphinx-favicon=1.0.1 # for custom favicons # https://github.com/tcmetzger/sphinx-favicon/releases
  - sphinx-copybutton=0.5.2 # for copy button in code blocks # https://github.com/executablebooks/sphinx-copybutton/releases
  # build process
  - sphinx-autobuild=2021.3.14 # live-html support # https://github.com/executablebooks/sphinx-autobuild/releases

Actual Result

mamba env create --quiet --name latest --file environment.yml
Warning: you have pip-installed dependencies in your environment file, but you do not list pip itself as one of your conda dependencies.  Conda may not use the correct pip to install your packages, and they may end up in the wrong place.  Please add an explicit pip dependency.  I'm adding one for you, but still nagging you.
Encountered problems while solving:
  - package sphinx-6.2.1-pyhd8ed1ab_0 requires docutils >=0.18.1,<0.20, but none of the providers can be installed

[michaelweinold]

...I've tried the local install with micromamba as well - works fine:

Terminal Output

``` michaelweinold@Michaels-MBP ~ % micromamba env create -f ~/github/brightway-documentation/environment.yml

                                       __
      __  ______ ___  ____ _____ ___  / /_  ____ _
     / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
    / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
   / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
  /_/

conda-forge/osx-arm64 6.7MB @ 3.3MB/s 2.3s
conda-forge/noarch 13.1MB @ 3.8MB/s 3.8s

Transaction

Prefix: /Users/michaelweinold/micromamba/envs/sphinx

Updating specs:

• python=3.11
• ipython
• sphinx=6.2.1
• pydata-sphinx-theme=0.13.3
• myst-parser=2.0.0
• nbsphinx=0.9.2
• sphinx-autoapi=2.1.0
• sphinx-design=0.4.1
• sphinx-notfound-page=0.8.3
• graphviz=8.0.5
• sphinx-favicon=1.0.1
• sphinx-copybutton=0.5.2
• sphinx-autobuild=2021.3.14

Package Version Build Channel Size
───────────────────────────────────────────────────────────────────────────────────────────
Install:
───────────────────────────────────────────────────────────────────────────────────────────

• accessible-pygments 0.0.4 pyhd8ed1ab_0 conda-forge 16kB
• alabaster 0.7.13 pyhd8ed1ab_0 conda-forge 18kB
• appnope 0.1.3 pyhd8ed1ab_0 conda-forge 8kB
• astroid 2.15.5 py311h267d04e_0 conda-forge 513kB
• asttokens 2.2.1 pyhd8ed1ab_0 conda-forge 28kB
• atk-1.0 2.38.0 hcb7b3dd_1 conda-forge 373kB
• attrs 23.1.0 pyh71513ae_1 conda-forge 55kB
• babel 2.12.1 pyhd8ed1ab_1 conda-forge 7MB
• backcall 0.2.0 pyh9f0ad1d_0 conda-forge 14kB
• backports 1.0 pyhd8ed1ab_3 conda-forge 6kB
• backports.functools_lru_cache 1.6.5 pyhd8ed1ab_0 conda-forge 12kB
• beautifulsoup4 4.12.2 pyha770c72_0 conda-forge 115kB
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• bzip2 1.0.8 h3422bc3_4 conda-forge 152kB
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• cairo 1.16.0 h1e71087_1016 conda-forge 997kB
• certifi 2023.5.7 pyhd8ed1ab_0 conda-forge 152kB
• charset-normalizer 3.1.0 pyhd8ed1ab_0 conda-forge 45kB
• colorama 0.4.6 pyhd8ed1ab_0 conda-forge 25kB
• decorator 5.1.1 pyhd8ed1ab_0 conda-forge 12kB
• defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge 24kB
• docutils 0.19 py311h267d04e_1 conda-forge 975kB
• entrypoints 0.4 pyhd8ed1ab_0 conda-forge 9kB
• executing 1.2.0 pyhd8ed1ab_0 conda-forge 25kB
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• font-ttf-source-code-pro 2.038 h77eed37_0 conda-forge 701kB
• font-ttf-ubuntu 0.83 hab24e00_0 conda-forge 2MB
• fontconfig 2.14.2 h82840c6_0 conda-forge 238kB
• fonts-conda-ecosystem 1 0 conda-forge 4kB
• fonts-conda-forge 1 0 conda-forge 4kB
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• gdk-pixbuf 2.42.10 h1ac0d0d_2 conda-forge 547kB
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• graphite2 1.3.13 h9f76cd9_1001 conda-forge 83kB
• graphviz 8.0.5 h10878c0_0 conda-forge 5MB
• gtk2 2.24.33 h57013de_2 conda-forge 7MB
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• icu 72.1 he12128b_0 conda-forge 12MB
• idna 3.4 pyhd8ed1ab_0 conda-forge 57kB
• imagesize 1.4.1 pyhd8ed1ab_0 conda-forge 10kB
• importlib-metadata 6.7.0 pyha770c72_0 conda-forge 26kB
• importlib_metadata 6.7.0 hd8ed1ab_0 conda-forge 9kB
• importlib_resources 5.12.0 pyhd8ed1ab_0 conda-forge 31kB
• ipython 8.14.0 pyhd1c38e8_0 conda-forge 585kB
• jedi 0.18.2 pyhd8ed1ab_0 conda-forge 804kB
• jinja2 3.1.2 pyhd8ed1ab_1 conda-forge 101kB
• jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge 70kB
• jupyter_client 8.3.0 pyhd8ed1ab_0 conda-forge 104kB
• jupyter_core 5.3.1 py311h267d04e_0 conda-forge 117kB
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• libbrotlienc 1.0.9 h1a8c8d9_8 conda-forge 305kB
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• libglib 2.76.3 h24e9cb9_0 conda-forge 3MB
• libiconv 1.17 he4db4b2_0 conda-forge 1MB
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• libpng 1.6.39 h76d750c_0 conda-forge 259kB
• librsvg 2.56.1 h0db3404_0 conda-forge 4MB
• libsodium 1.0.18 h27ca646_1 conda-forge 325kB
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• libtiff 4.5.1 h23a1a89_0 conda-forge 365kB
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• libzlib 1.2.13 h53f4e23_5 conda-forge 48kB
• livereload 2.6.3 pyh9f0ad1d_0 conda-forge 25kB
• markdown-it-py 3.0.0 pyhd8ed1ab_0 conda-forge 64kB
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• nbconvert-core 7.6.0 pyhd8ed1ab_0 conda-forge 212kB
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• nbsphinx 0.9.2 pyhd8ed1ab_0 conda-forge 33kB
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• packaging 23.1 pyhd8ed1ab_0 conda-forge 46kB
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• pcre2 10.40 hb34f9b4_0 conda-forge 1MB
• pexpect 4.8.0 pyh9f0ad1d_2 conda-forge 48kB
• pickleshare 0.7.5 py_1003 conda-forge 9kB
• pip 23.1.2 pyhd8ed1ab_0 conda-forge 1MB
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• pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge 9kB
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• prompt_toolkit 3.0.38 hd8ed1ab_0 conda-forge 6kB
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• pydata-sphinx-theme 0.13.3 pyhd8ed1ab_0 conda-forge 802kB
• pygments 2.15.1 pyhd8ed1ab_0 conda-forge 841kB
• pyrsistent 0.19.3 py311he2be06e_0 conda-forge 119kB
• pysocks 1.7.1 pyha2e5f31_6 conda-forge 19kB
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• pytz 2023.3 pyhd8ed1ab_0 conda-forge 187kB
• pyyaml 6.0 py311he2be06e_5 conda-forge 193kB
• pyzmq 25.1.0 py311hb1af645_0 conda-forge 507kB
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• requests 2.31.0 pyhd8ed1ab_0 conda-forge 57kB
• setuptools 68.0.0 pyhd8ed1ab_0 conda-forge 464kB
• six 1.16.0 pyh6c4a22f_0 conda-forge 14kB
• snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge 59kB
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• sphinx 6.2.1 pyhd8ed1ab_0 conda-forge 1MB
• sphinx-autoapi 2.1.0 pyhd8ed1ab_0 conda-forge 44kB
• sphinx-autobuild 2021.3.14 pyhd8ed1ab_0 conda-forge 13kB
• sphinx-copybutton 0.5.2 pyhd8ed1ab_0 conda-forge 18kB
• sphinx-design 0.4.1 pyhd8ed1ab_1 conda-forge 885kB
• sphinx-favicon 1.0.1 pyhd8ed1ab_0 conda-forge 13kB
• sphinx-notfound-page 0.8.3 pyhd8ed1ab_0 conda-forge 12kB
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• sphinxcontrib-dotnetdomain 0.4 py_0 conda-forge 9kB
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• sphinxcontrib-jsmath 1.0.1 py_0 conda-forge 7kB
• sphinxcontrib-qthelp 1.0.3 py_0 conda-forge 26kB
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• stack_data 0.6.2 pyhd8ed1ab_0 conda-forge 26kB
• tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge 23kB
• tk 8.6.12 he1e0b03_0 conda-forge 3MB
• tornado 6.3.2 py311heffc1b2_0 conda-forge 841kB
• traitlets 5.9.0 pyhd8ed1ab_0 conda-forge 98kB
• typing-extensions 4.6.3 hd8ed1ab_0 conda-forge 10kB
• typing_extensions 4.6.3 pyha770c72_0 conda-forge 35kB
• tzdata 2023c h71feb2d_0 conda-forge 118kB
• unidecode 1.3.6 pyhd8ed1ab_0 conda-forge 164kB
• urllib3 2.0.3 pyhd8ed1ab_0 conda-forge 98kB
• wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge 29kB
• webencodings 0.5.1 py_1 conda-forge 12kB
• wheel 0.40.0 pyhd8ed1ab_0 conda-forge 56kB
• wrapt 1.15.0 py311he2be06e_0 conda-forge 59kB
• xz 5.2.6 h57fd34a_0 conda-forge 236kB
• yaml 0.2.5 h3422bc3_2 conda-forge 88kB
• zeromq 4.3.4 hbdafb3b_1 conda-forge 318kB
• zipp 3.15.0 pyhd8ed1ab_0 conda-forge 17kB
• zlib 1.2.13 h53f4e23_5 conda-forge 80kB
• zstd 1.5.2 hf913c23_6 conda-forge 308kB

Summary:

Install: 164 packages

Total download: 121MB

───────────────────────────────────────────────────────────────────────────────────────────

Confirm changes: [Y/n] Y

Transaction starting
libwebp-base 266.0kB @ 1.6MB/s 0.2s
xz 235.7kB @ 1.1MB/s 0.2s
libzlib 48.1kB @ 223.3kB/s 0.0s
libexpat 63.4kB @ 283.3kB/s 0.2s
ncurses 799.2kB @ 3.2MB/s 0.2s
yaml 88.0kB @ 303.3kB/s 0.1s
lerc 215.7kB @ 613.5kB/s 0.1s
expat 117.9kB @ 299.7kB/s 0.1s
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setuptools 463.7kB @ 530.2kB/s 0.1s
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matplotlib-inline 12.3kB @ 10.5kB/s 0.0s
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executing 25.0kB @ 13.2kB/s 0.0s
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jsonschema 70.5kB @ 33.0kB/s 0.0s
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pyzmq 507.1kB @ 234.8kB/s 0.1s
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libsodium 324.9kB @ 147.3kB/s 0.0s
fribidi 60.3kB @ 26.9kB/s 0.0s
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cairo 996.9kB @ 405.9kB/s 0.1s
typing_extensions 34.9kB @ 14.1kB/s 0.0s
entrypoints 9.2kB @ 3.7kB/s 0.0s
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nbformat 101.0kB @ 33.0kB/s 0.0s
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Transaction finished

To activate this environment, use:

micromamba activate sphinx

Or to execute a single command in this environment, use:

micromamba run -n sphinx mycommand

<\details>

[humitos]

This seems related to Read the Docs in particular. It automatically adds sphinx_rtd_theme to the pip dependencies. That seems to break your environment. I just try using the environment.yaml shown on your build and it breaks. I'll see if I can this in your project.

[michaelweinold]

@humitos, would it be possible for you to set the feature flag CONDA_APPEND_CORE_REQUIREMENTS in our project to false (or whatever value this would need to take) as an intermediate solution?

[humitos]

We will be deploying this work soon: #10508. Once it's deployed I will enable it in your project. I think it should make Conda to resolve properly.

[michaelweinold]

Hey, @humitos! Could you enable that flag for us, now that #10508 has been merged? Many thanks!

[humitos]

Hi @michaelweinold. The PR was just merged, but it's not deployed yet. It will be deployed next Tuesday. I wanted to deployed yesterday but I wasn't able to get a review before doing the deploy.

[michaelweinold]

Understood - looking forward to it! Many thanks for staying on this 🙏

[humitos]

Hi @michaelweinold! I enabled the feature flag in your project and it seems the Conda environment is created successfully. However, it seems you have an issue your YAML file regarding the Sphinx conf.py file: https://readthedocs.org/projects/brightway-documentation/builds/21336554/

Let me know if everything is working as expected after solving that issue 👍🏼

[michaelweinold]

Our build works fine now, many thanks for your help!