From 4032201def19b4263833d957d708f6b92c7bd624 Mon Sep 17 00:00:00 2001 From: Oleg Zharkov Date: Fri, 28 Feb 2020 18:08:55 +0100 Subject: [PATCH 1/2] remove 10.1038/nmeth.3252 from bioconda --- data/a4base/bioconda_a4base.yaml | 1 - data/a4core/bioconda_a4core.yaml | 1 - data/a4preproc/bioconda_a4preproc.yaml | 1 - data/a4reporting/bioconda_a4reporting.yaml | 1 - data/affycompatible/bioconda_affycompatible.yaml | 1 - data/affycontam/bioconda_affycontam.yaml | 1 - data/affycoretools/bioconda_affycoretools.yaml | 1 - data/affyexpress/bioconda_affyexpress.yaml | 1 - data/affyio/bioconda_affyio.yaml | 1 - data/annaffy/bioconda_annaffy.yaml | 1 - data/annotate/bioconda_annotate.yaml | 1 - data/annotationdbi/bioconda_annotationdbi.yaml | 1 - data/annotationforge/bioconda_annotationforge.yaml | 1 - data/annotationfuncs/bioconda_annotationfuncs.yaml | 1 - data/annotationhub/bioconda_annotationhub.yaml | 1 - data/annotationhubdata/bioconda_annotationhubdata.yaml | 1 - data/arraytools/bioconda_arraytools.yaml | 1 - data/aspli/bioconda_aspli.yaml | 1 - data/bader/bioconda_bader.yaml | 1 - data/badregionfinder/bioconda_badregionfinder.yaml | 1 - data/bamsignals/bioconda_bamsignals.yaml | 1 - data/basespacer/bioconda_basespacer.yaml | 1 - data/beat/bioconda_beat.yaml | 1 - data/bgafun/bioconda_bgafun.yaml | 1 - data/bicare/bioconda_bicare.yaml | 1 - data/biocgraph/bioconda_biocgraph.yaml | 1 - data/biocstyle/bioconda_biocstyle.yaml | 1 - data/biocviews/bioconda_biocviews.yaml | 1 - data/biodist/bioconda_biodist.yaml | 1 - data/biomformat/bioconda_biomformat.yaml | 1 - data/biomvcclass/bioconda_biomvcclass.yaml | 1 - data/biostrings/bioconda_biostrings.yaml | 1 - data/biosvd/bioconda_biosvd.yaml | 1 - data/biovizbase/bioconda_biovizbase.yaml | 1 - data/blima/bioconda_blima.yaml | 1 - data/bsgenome/bioconda_bsgenome.yaml | 1 - data/bufferedmatrix/bioconda_bufferedmatrix.yaml | 1 - data/bufferedmatrixmethods/bioconda_bufferedmatrixmethods.yaml | 1 - data/bus/bioconda_bus.yaml | 1 - data/cancerinsilico/bioconda_cancerinsilico.yaml | 1 - data/cancersubtypes/bioconda_cancersubtypes.yaml | 1 - data/category/bioconda_category.yaml | 1 - data/causalr/bioconda_causalr.yaml | 1 - data/cellgrowth/bioconda_cellgrowth.yaml | 1 - data/chipseq/bioconda_chipseq.yaml | 1 - data/chipsim/bioconda_chipsim.yaml | 1 - data/chopsticks/bioconda_chopsticks.yaml | 1 - data/chromheatmap/bioconda_chromheatmap.yaml | 1 - data/cindex/bioconda_cindex.yaml | 1 - data/cleaver/bioconda_cleaver.yaml | 1 - data/clst/bioconda_clst.yaml | 1 - data/clstutils/bioconda_clstutils.yaml | 1 - data/clustcomp/bioconda_clustcomp.yaml | 1 - data/clustersignificance/bioconda_clustersignificance.yaml | 1 - data/clusterstab/bioconda_clusterstab.yaml | 1 - data/cner/bioconda_cner.yaml | 1 - data/cntools/bioconda_cntools.yaml | 1 - data/cnvgsa/bioconda_cnvgsa.yaml | 1 - data/cnvpanelizer/bioconda_cnvpanelizer.yaml | 1 - data/cogps/bioconda_cogps.yaml | 1 - data/convert/bioconda_convert.yaml | 1 - data/correp/bioconda_correp.yaml | 1 - data/covrna/bioconda_covrna.yaml | 1 - data/cpvsnp/bioconda_cpvsnp.yaml | 1 - data/ctc/bioconda_ctc.yaml | 1 - data/dcgsa/bioconda_dcgsa.yaml | 1 - data/ddct/bioconda_ddct.yaml | 1 - data/deformats/bioconda_deformats.yaml | 1 - data/degreport/bioconda_degreport.yaml | 1 - data/demand/bioconda_demand.yaml | 1 - data/dfp/bioconda_dfp.yaml | 1 - data/diffgeneanalysis/bioconda_diffgeneanalysis.yaml | 1 - data/director/bioconda_director.yaml | 1 - data/dnacopy/bioconda_dnacopy.yaml | 1 - data/drugvsdisease/bioconda_drugvsdisease.yaml | 1 - data/dyndoc/bioconda_dyndoc.yaml | 1 - data/ebsea/bioconda_ebsea.yaml | 1 - data/encodexplorer/bioconda_encodexplorer.yaml | 1 - data/ensembldb/bioconda_ensembldb.yaml | 1 - data/epivizrdata/bioconda_epivizrdata.yaml | 1 - data/epivizrserver/bioconda_epivizrserver.yaml | 1 - data/epivizrstandalone/bioconda_epivizrstandalone.yaml | 1 - data/esetvis/bioconda_esetvis.yaml | 1 - data/findmyfriends/bioconda_findmyfriends.yaml | 1 - data/fishalyser/bioconda_fishalyser.yaml | 1 - data/flagme/bioconda_flagme.yaml | 1 - data/flowbeads/bioconda_flowbeads.yaml | 1 - data/flowmatch/bioconda_flowmatch.yaml | 1 - data/flowploidy/bioconda_flowploidy.yaml | 1 - data/gcrisprtools/bioconda_gcrisprtools.yaml | 1 - data/genbankr/bioconda_genbankr.yaml | 1 - data/genefilter/bioconda_genefilter.yaml | 1 - data/genemeta/bioconda_genemeta.yaml | 1 - data/geneplast/bioconda_geneplast.yaml | 1 - data/geneplotter/bioconda_geneplotter.yaml | 1 - data/geneticsdesign/bioconda_geneticsdesign.yaml | 1 - data/genomeinfodb/bioconda_genomeinfodb.yaml | 1 - data/genomeintervals/bioconda_genomeintervals.yaml | 1 - data/genomicfiles/bioconda_genomicfiles.yaml | 1 - data/genominator/bioconda_genominator.yaml | 1 - data/genoset/bioconda_genoset.yaml | 1 - data/geosubmission/bioconda_geosubmission.yaml | 1 - data/ggbase/bioconda_ggbase.yaml | 1 - data/ggcyto/bioconda_ggcyto.yaml | 1 - data/gmrp/bioconda_gmrp.yaml | 1 - data/gotools/bioconda_gotools.yaml | 1 - data/graph/bioconda_graph.yaml | 1 - data/grmetrics/bioconda_grmetrics.yaml | 1 - data/gseabase/bioconda_gseabase.yaml | 1 - data/gsri/bioconda_gsri.yaml | 1 - data/hdf5array/bioconda_hdf5array.yaml | 1 - data/heatplus/bioconda_heatplus.yaml | 1 - data/helloranges/bioconda_helloranges.yaml | 1 - data/help/bioconda_help.yaml | 1 - data/hiannotator/bioconda_hiannotator.yaml | 1 - data/hmmcopy/bioconda_hmmcopy.yaml | 1 - data/hopach/bioconda_hopach.yaml | 1 - data/hpar/bioconda_hpar.yaml | 1 - data/hybridmtest/bioconda_hybridmtest.yaml | 1 - data/hyperdraw/bioconda_hyperdraw.yaml | 1 - data/hypergraph/bioconda_hypergraph.yaml | 1 - data/ibh/bioconda_ibh.yaml | 1 - data/icens/bioconda_icens.yaml | 1 - data/ideoviz/bioconda_ideoviz.yaml | 1 - data/idiogram/bioconda_idiogram.yaml | 1 - data/imagehts/bioconda_imagehts.yaml | 1 - data/inpower/bioconda_inpower.yaml | 1 - data/interactivedisplay/bioconda_interactivedisplay.yaml | 1 - data/interactivedisplaybase/bioconda_interactivedisplaybase.yaml | 1 - data/ioniser/bioconda_ioniser.yaml | 1 - data/isolde/bioconda_isolde.yaml | 1 - data/keggorthology/bioconda_keggorthology.yaml | 1 - data/kimod/bioconda_kimod.yaml | 1 - data/linc/bioconda_linc.yaml | 1 - data/liquidassociation/bioconda_liquidassociation.yaml | 1 - data/lmgene/bioconda_lmgene.yaml | 1 - data/logitt/bioconda_logitt.yaml | 1 - data/lol/bioconda_lol.yaml | 1 - data/lpeadj/bioconda_lpeadj.yaml | 1 - data/macorrplot/bioconda_macorrplot.yaml | 1 - data/maigespack/bioconda_maigespack.yaml | 1 - data/manta/bioconda_manta.yaml | 1 - data/mantelcorr/bioconda_mantelcorr.yaml | 1 - data/matter/bioconda_matter.yaml | 1 - data/mcrestimate/bioconda_mcrestimate.yaml | 1 - data/measurementerror.cor/bioconda_measurementerror.cor.yaml | 1 - data/meshes/bioconda_meshes.yaml | 1 - data/metaseq/bioconda_metaseq.yaml | 1 - data/methtargetedngs/bioconda_methtargetedngs.yaml | 1 - data/methyanalysis/bioconda_methyanalysis.yaml | 1 - data/michip/bioconda_michip.yaml | 1 - data/microrna/bioconda_microrna.yaml | 1 - data/mirnatap/bioconda_mirnatap.yaml | 1 - data/mlinterfaces/bioconda_mlinterfaces.yaml | 1 - data/mlseq/bioconda_mlseq.yaml | 1 - data/mmdiff2/bioconda_mmdiff2.yaml | 1 - data/motifdb/bioconda_motifdb.yaml | 1 - data/motifstack/bioconda_motifstack.yaml | 1 - data/motiv/bioconda_motiv.yaml | 1 - data/msmseda/bioconda_msmseda.yaml | 1 - data/msnid/bioconda_msnid.yaml | 1 - data/multiscan/bioconda_multiscan.yaml | 1 - data/mvcclass/bioconda_mvcclass.yaml | 1 - data/mzid/bioconda_mzid.yaml | 1 - data/ncigraph/bioconda_ncigraph.yaml | 1 - data/oligoclasses/bioconda_oligoclasses.yaml | 1 - data/organismdbi/bioconda_organismdbi.yaml | 1 - data/paircompviz/bioconda_paircompviz.yaml | 1 - data/parody/bioconda_parody.yaml | 1 - data/pathostat/bioconda_pathostat.yaml | 1 - data/pathrender/bioconda_pathrender.yaml | 1 - data/pcot2/bioconda_pcot2.yaml | 1 - data/pcpheno/bioconda_pcpheno.yaml | 1 - data/pepxmltab/bioconda_pepxmltab.yaml | 1 - data/pgsea/bioconda_pgsea.yaml | 1 - data/pint/bioconda_pint.yaml | 1 - data/pkgdeptools/bioconda_pkgdeptools.yaml | 1 - data/plier/bioconda_plier.yaml | 1 - data/plpe/bioconda_plpe.yaml | 1 - data/podkat/bioconda_podkat.yaml | 1 - data/prada/bioconda_prada.yaml | 1 - data/preprocesscore/bioconda_preprocesscore.yaml | 1 - data/prize/bioconda_prize.yaml | 1 - data/process/bioconda_process.yaml | 1 - data/profia/bioconda_profia.yaml | 1 - .../bioconda_proteomicsannotationhubdata.yaml | 1 - data/protgenerics/bioconda_protgenerics.yaml | 1 - data/psicquic/bioconda_psicquic.yaml | 1 - data/pwmenrich/bioconda_pwmenrich.yaml | 1 - data/qcmetrics/bioconda_qcmetrics.yaml | 1 - data/qrqc/bioconda_qrqc.yaml | 1 - data/quantsmooth/bioconda_quantsmooth.yaml | 1 - data/randpack/bioconda_randpack.yaml | 1 - data/rariant/bioconda_rariant.yaml | 1 - data/rbcbook1/bioconda_rbcbook1.yaml | 1 - data/rbioinf/bioconda_rbioinf.yaml | 1 - data/rbm/bioconda_rbm.yaml | 1 - data/rbowtie/bioconda_rbowtie.yaml | 1 - data/rcaspar/bioconda_rcaspar.yaml | 1 - data/recoup/bioconda_recoup.yaml | 1 - data/refnet/bioconda_refnet.yaml | 1 - data/regsplice/bioconda_regsplice.yaml | 1 - data/rgalaxy/bioconda_rgalaxy.yaml | 1 - data/rgraph2js/bioconda_rgraph2js.yaml | 1 - data/rgreat/bioconda_rgreat.yaml | 1 - data/rgsea/bioconda_rgsea.yaml | 1 - data/rgsepd/bioconda_rgsepd.yaml | 1 - data/rhtslib/bioconda_rhtslib.yaml | 1 - data/rmir/bioconda_rmir.yaml | 1 - data/rnits/bioconda_rnits.yaml | 1 - data/roar/bioconda_roar.yaml | 1 - data/roc/bioconda_roc.yaml | 1 - data/rols/bioconda_rols.yaml | 1 - data/rrdp/bioconda_rrdp.yaml | 1 - data/rrho/bioconda_rrho.yaml | 1 - data/rsamtools/bioconda_rsamtools.yaml | 1 - data/rtcga/bioconda_rtcga.yaml | 1 - data/rtrmui/bioconda_rtrmui.yaml | 1 - data/s4vectors/bioconda_s4vectors.yaml | 1 - data/sagenhaft/bioconda_sagenhaft.yaml | 1 - data/sagx/bioconda_sagx.yaml | 1 - data/savr/bioconda_savr.yaml | 1 - data/scisi/bioconda_scisi.yaml | 1 - data/semdist/bioconda_semdist.yaml | 1 - data/sepa/bioconda_sepa.yaml | 1 - data/seqlogo/bioconda_seqlogo.yaml | 1 - data/seqpattern/bioconda_seqpattern.yaml | 1 - data/seqtools/bioconda_seqtools.yaml | 1 - data/sigar/bioconda_sigar.yaml | 1 - data/sigpathway/bioconda_sigpathway.yaml | 1 - data/simbindprofiles/bioconda_simbindprofiles.yaml | 1 - data/sizepower/bioconda_sizepower.yaml | 1 - data/slqpcr/bioconda_slqpcr.yaml | 1 - data/snpstats/bioconda_snpstats.yaml | 1 - data/soggi/bioconda_soggi.yaml | 1 - data/spikeli/bioconda_spikeli.yaml | 1 - data/splicegear/bioconda_splicegear.yaml | 1 - data/splinter/bioconda_splinter.yaml | 1 - data/splots/bioconda_splots.yaml | 1 - data/squadd/bioconda_squadd.yaml | 1 - data/sscu/bioconda_sscu.yaml | 1 - data/ssize/bioconda_ssize.yaml | 1 - data/ssviz/bioconda_ssviz.yaml | 1 - data/streamer/bioconda_streamer.yaml | 1 - data/summarizedexperiment/bioconda_summarizedexperiment.yaml | 1 - data/timecourse/bioconda_timecourse.yaml | 1 - data/tracktables/bioconda_tracktables.yaml | 1 - data/trackviewer/bioconda_trackviewer.yaml | 1 - data/transcriptr/bioconda_transcriptr.yaml | 1 - data/transview/bioconda_transview.yaml | 1 - data/trigger/bioconda_trigger.yaml | 1 - data/trio/bioconda_trio.yaml | 1 - data/tvtb/bioconda_tvtb.yaml | 1 - data/uniprot.ws/bioconda_uniprot.ws.yaml | 1 - data/variantfiltering/bioconda_variantfiltering.yaml | 1 - data/weaver/bioconda_weaver.yaml | 1 - data/xvector/bioconda_xvector.yaml | 1 - data/yapsa/bioconda_yapsa.yaml | 1 - data/yaqcaffy/bioconda_yaqcaffy.yaml | 1 - data/zlibbioc/bioconda_zlibbioc.yaml | 1 - 260 files changed, 260 deletions(-) diff --git a/data/a4base/bioconda_a4base.yaml b/data/a4base/bioconda_a4base.yaml index 4e9fa49016ce1..769bacf8fb943 100644 --- a/data/a4base/bioconda_a4base.yaml +++ b/data/a4base/bioconda_a4base.yaml @@ -3,7 +3,6 @@ description: Automated Affymetrix Array Analysis home: https://bioconductor.org/packages/3.10/bioc/html/a4Base.html identifiers: - biotools:a4base -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-a4base diff --git a/data/a4core/bioconda_a4core.yaml b/data/a4core/bioconda_a4core.yaml index 7d0fd069569c4..1334e26a78163 100644 --- a/data/a4core/bioconda_a4core.yaml +++ b/data/a4core/bioconda_a4core.yaml @@ -3,7 +3,6 @@ description: Automated Affymetrix Array Analysis Core Package home: https://bioconductor.org/packages/3.10/bioc/html/a4Core.html identifiers: - biotools:a4core -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-a4core diff --git a/data/a4preproc/bioconda_a4preproc.yaml b/data/a4preproc/bioconda_a4preproc.yaml index 891c52b9135bb..87e91acf85f16 100644 --- a/data/a4preproc/bioconda_a4preproc.yaml +++ b/data/a4preproc/bioconda_a4preproc.yaml @@ -3,7 +3,6 @@ description: Automated Affymetrix Array Analysis Preprocessing Package home: https://bioconductor.org/packages/3.10/bioc/html/a4Preproc.html identifiers: - biotools:a4preproc -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-a4preproc diff --git a/data/a4reporting/bioconda_a4reporting.yaml b/data/a4reporting/bioconda_a4reporting.yaml index 825aec23cd814..cc00205c7675f 100644 --- a/data/a4reporting/bioconda_a4reporting.yaml +++ b/data/a4reporting/bioconda_a4reporting.yaml @@ -3,7 +3,6 @@ description: Automated Affymetrix Array Analysis Reporting Package home: https://bioconductor.org/packages/3.10/bioc/html/a4Reporting.html identifiers: - biotools:a4reporting -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-a4reporting diff --git a/data/affycompatible/bioconda_affycompatible.yaml b/data/affycompatible/bioconda_affycompatible.yaml index b629f83b7643b..4ccf459f14684 100644 --- a/data/affycompatible/bioconda_affycompatible.yaml +++ b/data/affycompatible/bioconda_affycompatible.yaml @@ -7,7 +7,6 @@ description: This package provides an interface to Affymetrix chip annotation an home: https://bioconductor.org/packages/3.10/bioc/html/AffyCompatible.html identifiers: - biotools:affycompatible -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-affycompatible summary: Affymetrix GeneChip software compatibility diff --git a/data/affycontam/bioconda_affycontam.yaml b/data/affycontam/bioconda_affycontam.yaml index 08534c2bf6e97..ff97652ed225d 100644 --- a/data/affycontam/bioconda_affycontam.yaml +++ b/data/affycontam/bioconda_affycontam.yaml @@ -3,7 +3,6 @@ description: structured corruption of cel file data to demonstrate QA effectiven home: https://bioconductor.org/packages/3.10/bioc/html/affyContam.html identifiers: - biotools:affycontam -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-affycontam summary: structured corruption of affymetrix cel file data diff --git a/data/affycoretools/bioconda_affycoretools.yaml b/data/affycoretools/bioconda_affycoretools.yaml index a9283951af825..b43c17a7dde42 100644 --- a/data/affycoretools/bioconda_affycoretools.yaml +++ b/data/affycoretools/bioconda_affycoretools.yaml @@ -4,7 +4,6 @@ description: Various wrapper functions that have been written to streamline the home: https://bioconductor.org/packages/3.10/bioc/html/affycoretools.html identifiers: - biotools:affycoretools -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-affycoretools summary: Functions useful for those doing repetitive analyses with Affymetrix GeneChips diff --git a/data/affyexpress/bioconda_affyexpress.yaml b/data/affyexpress/bioconda_affyexpress.yaml index cc1060e852d48..aef2fc7724e26 100644 --- a/data/affyexpress/bioconda_affyexpress.yaml +++ b/data/affyexpress/bioconda_affyexpress.yaml @@ -5,7 +5,6 @@ description: The purpose of this package is to provide a comprehensive and easy- home: https://bioconductor.org/packages/3.10/bioc/html/AffyExpress.html identifiers: - biotools:affyexpress -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-affyexpress diff --git a/data/affyio/bioconda_affyio.yaml b/data/affyio/bioconda_affyio.yaml index 5aebe4b2fb86e..8a9749e5f2121 100644 --- a/data/affyio/bioconda_affyio.yaml +++ b/data/affyio/bioconda_affyio.yaml @@ -4,7 +4,6 @@ description: Routines for parsing Affymetrix data files based upon file format i home: https://bioconductor.org/packages/3.10/bioc/html/affyio.html identifiers: - biotools:affyio -- doi:10.1038/nmeth.3252 license: LGPL (>= 2) license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-affyio diff --git a/data/annaffy/bioconda_annaffy.yaml b/data/annaffy/bioconda_annaffy.yaml index ef2b403fbcebf..4097a325a60c1 100644 --- a/data/annaffy/bioconda_annaffy.yaml +++ b/data/annaffy/bioconda_annaffy.yaml @@ -6,7 +6,6 @@ description: Functions for handling data from Bioconductor Affymetrix annotation home: https://bioconductor.org/packages/3.10/bioc/html/annaffy.html identifiers: - biotools:annaffy -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-annaffy diff --git a/data/annotate/bioconda_annotate.yaml b/data/annotate/bioconda_annotate.yaml index 4275538c580be..3f050c1e66cd8 100644 --- a/data/annotate/bioconda_annotate.yaml +++ b/data/annotate/bioconda_annotate.yaml @@ -3,7 +3,6 @@ description: Using R enviroments for annotation. home: https://bioconductor.org/packages/3.10/bioc/html/annotate.html identifiers: - biotools:annotate -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-annotate summary: Annotation for microarrays diff --git a/data/annotationdbi/bioconda_annotationdbi.yaml b/data/annotationdbi/bioconda_annotationdbi.yaml index e695a0a3cd54f..836b879a72602 100644 --- a/data/annotationdbi/bioconda_annotationdbi.yaml +++ b/data/annotationdbi/bioconda_annotationdbi.yaml @@ -4,7 +4,6 @@ description: Implements a user-friendly interface for querying SQLite-based anno home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationDbi.html identifiers: - biotools:annotationdbi -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-annotationdbi summary: Manipulation of SQLite-based annotations in Bioconductor diff --git a/data/annotationforge/bioconda_annotationforge.yaml b/data/annotationforge/bioconda_annotationforge.yaml index f3fa58c27243c..5a8d9f6d09148 100644 --- a/data/annotationforge/bioconda_annotationforge.yaml +++ b/data/annotationforge/bioconda_annotationforge.yaml @@ -4,7 +4,6 @@ description: Provides code for generating Annotation packages and their database home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationForge.html identifiers: - biotools:annotationforge -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-annotationforge summary: Tools for building SQLite-based annotation data packages diff --git a/data/annotationfuncs/bioconda_annotationfuncs.yaml b/data/annotationfuncs/bioconda_annotationfuncs.yaml index ab46c6eca27d6..fa18d91c52787 100644 --- a/data/annotationfuncs/bioconda_annotationfuncs.yaml +++ b/data/annotationfuncs/bioconda_annotationfuncs.yaml @@ -4,7 +4,6 @@ description: Functions for handling translating between different identifieres u home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationFuncs.html identifiers: - biotools:annotationfuncs -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-annotationfuncs diff --git a/data/annotationhub/bioconda_annotationhub.yaml b/data/annotationhub/bioconda_annotationhub.yaml index 56213aec16adb..1ae3d1ec9edd4 100644 --- a/data/annotationhub/bioconda_annotationhub.yaml +++ b/data/annotationhub/bioconda_annotationhub.yaml @@ -9,7 +9,6 @@ description: This package provides a client for the Bioconductor AnnotationHub w home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationHub.html identifiers: - biotools:annotationhub -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-annotationhub summary: Client to access AnnotationHub resources diff --git a/data/annotationhubdata/bioconda_annotationhubdata.yaml b/data/annotationhubdata/bioconda_annotationhubdata.yaml index f1d2d27b71f1a..8e8f23ac5d611 100644 --- a/data/annotationhubdata/bioconda_annotationhubdata.yaml +++ b/data/annotationhubdata/bioconda_annotationhubdata.yaml @@ -4,7 +4,6 @@ description: These recipes convert a wide variety and a growing number of public home: https://bioconductor.org/packages/3.10/bioc/html/AnnotationHubData.html identifiers: - biotools:annotationhubdata -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-annotationhubdata summary: Transform public data resources into Bioconductor Data Structures diff --git a/data/arraytools/bioconda_arraytools.yaml b/data/arraytools/bioconda_arraytools.yaml index e4ce18b9e0f71..3e4eacd67f1fb 100644 --- a/data/arraytools/bioconda_arraytools.yaml +++ b/data/arraytools/bioconda_arraytools.yaml @@ -9,7 +9,6 @@ description: This package is designed to provide solutions for quality assessmen home: https://bioconductor.org/packages/3.10/bioc/html/ArrayTools.html identifiers: - biotools:arraytools -- doi:10.1038/nmeth.3252 license: LGPL (>= 2.0) license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-arraytools diff --git a/data/aspli/bioconda_aspli.yaml b/data/aspli/bioconda_aspli.yaml index bcbfc3d7600b5..e64b21095fcc7 100644 --- a/data/aspli/bioconda_aspli.yaml +++ b/data/aspli/bioconda_aspli.yaml @@ -3,7 +3,6 @@ description: Integrative pipeline for the analysis of alternative splicing using home: https://bioconductor.org/packages/3.10/bioc/html/ASpli.html identifiers: - biotools:aspli -- doi:10.1038/nmeth.3252 license: GPL license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-aspli diff --git a/data/bader/bioconda_bader.yaml b/data/bader/bioconda_bader.yaml index 722b13670258e..e1fb996a19c75 100644 --- a/data/bader/bioconda_bader.yaml +++ b/data/bader/bioconda_bader.yaml @@ -7,7 +7,6 @@ description: For RNA sequencing count data, BADER fits a Bayesian hierarchical m home: https://bioconductor.org/packages/3.10/bioc/html/BADER.html identifiers: - biotools:bader -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-bader diff --git a/data/badregionfinder/bioconda_badregionfinder.yaml b/data/badregionfinder/bioconda_badregionfinder.yaml index 0669a39c4d15b..c78e5763c66fc 100644 --- a/data/badregionfinder/bioconda_badregionfinder.yaml +++ b/data/badregionfinder/bioconda_badregionfinder.yaml @@ -6,7 +6,6 @@ description: BadRegionFinder is a package for identifying regions with a bad, ac home: https://bioconductor.org/packages/3.10/bioc/html/BadRegionFinder.html identifiers: - biotools:badregionfinder -- doi:10.1038/nmeth.3252 license: LGPL-3 license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-badregionfinder diff --git a/data/bamsignals/bioconda_bamsignals.yaml b/data/bamsignals/bioconda_bamsignals.yaml index af114fdcc2737..5f11655d8144a 100644 --- a/data/bamsignals/bioconda_bamsignals.yaml +++ b/data/bamsignals/bioconda_bamsignals.yaml @@ -5,7 +5,6 @@ description: This package allows to efficiently obtain count vectors from indexe home: https://bioconductor.org/packages/3.10/bioc/html/bamsignals.html identifiers: - biotools:bamsignals -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-bamsignals diff --git a/data/basespacer/bioconda_basespacer.yaml b/data/basespacer/bioconda_basespacer.yaml index 3565dc04f86e3..2ab7b0dd9b53d 100644 --- a/data/basespacer/bioconda_basespacer.yaml +++ b/data/basespacer/bioconda_basespacer.yaml @@ -4,7 +4,6 @@ description: A rich R interface to Illumina's BaseSpace cloud computing environm home: https://bioconductor.org/packages/3.10/bioc/html/BaseSpaceR.html identifiers: - biotools:basespacer -- doi:10.1038/nmeth.3252 license: Apache License 2.0 name: bioconductor-basespacer summary: R SDK for BaseSpace RESTful API diff --git a/data/beat/bioconda_beat.yaml b/data/beat/bioconda_beat.yaml index 542fb1a092787..a4f9b4f1d2ab8 100644 --- a/data/beat/bioconda_beat.yaml +++ b/data/beat/bioconda_beat.yaml @@ -3,7 +3,6 @@ description: Model-based analysis of single-cell methylation data home: https://bioconductor.org/packages/3.10/bioc/html/BEAT.html identifiers: - biotools:beat -- doi:10.1038/nmeth.3252 license: LGPL (>= 3.0) license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-beat diff --git a/data/bgafun/bioconda_bgafun.yaml b/data/bgafun/bioconda_bgafun.yaml index 153cdc37a9835..7ebb68f8f3c0a 100644 --- a/data/bgafun/bioconda_bgafun.yaml +++ b/data/bgafun/bioconda_bgafun.yaml @@ -4,7 +4,6 @@ description: A method to identify specifity determining residues in protein fami home: https://bioconductor.org/packages/3.10/bioc/html/bgafun.html identifiers: - biotools:bgafun -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-bgafun summary: BGAfun A method to identify specifity determining residues in protein families diff --git a/data/bicare/bioconda_bicare.yaml b/data/bicare/bioconda_bicare.yaml index f3fa713eeeb43..878d2b00330a5 100644 --- a/data/bicare/bioconda_bicare.yaml +++ b/data/bicare/bioconda_bicare.yaml @@ -3,7 +3,6 @@ description: Biclustering Analysis and Results Exploration home: https://bioconductor.org/packages/3.10/bioc/html/BicARE.html identifiers: - biotools:bicare -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-bicare diff --git a/data/biocgraph/bioconda_biocgraph.yaml b/data/biocgraph/bioconda_biocgraph.yaml index 446c67fe0d470..14c23c9f49926 100644 --- a/data/biocgraph/bioconda_biocgraph.yaml +++ b/data/biocgraph/bioconda_biocgraph.yaml @@ -4,7 +4,6 @@ description: This package provides examples and code that make use of the differ home: https://bioconductor.org/packages/3.10/bioc/html/biocGraph.html identifiers: - biotools:biocgraph -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-biocgraph summary: Graph examples and use cases in Bioinformatics diff --git a/data/biocstyle/bioconda_biocstyle.yaml b/data/biocstyle/bioconda_biocstyle.yaml index 137b8a431fec5..48dad0e532fc5 100644 --- a/data/biocstyle/bioconda_biocstyle.yaml +++ b/data/biocstyle/bioconda_biocstyle.yaml @@ -4,7 +4,6 @@ description: Provides standard formatting styles for Bioconductor PDF and HTML d home: https://bioconductor.org/packages/3.10/bioc/html/BiocStyle.html identifiers: - biotools:biocstyle -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-biocstyle summary: Standard styles for vignettes and other Bioconductor documents diff --git a/data/biocviews/bioconda_biocviews.yaml b/data/biocviews/bioconda_biocviews.yaml index 82bb212d45ee6..0eddf9ef766fb 100644 --- a/data/biocviews/bioconda_biocviews.yaml +++ b/data/biocviews/bioconda_biocviews.yaml @@ -6,7 +6,6 @@ description: Infrastructure to support 'views' used to classify Bioconductor pac home: https://bioconductor.org/packages/3.10/bioc/html/biocViews.html identifiers: - biotools:biocviews -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-biocviews summary: Categorized views of R package repositories diff --git a/data/biodist/bioconda_biodist.yaml b/data/biodist/bioconda_biodist.yaml index bc4a9ae4f995d..7b49d570acc7e 100644 --- a/data/biodist/bioconda_biodist.yaml +++ b/data/biodist/bioconda_biodist.yaml @@ -3,7 +3,6 @@ description: A collection of software tools for calculating distance measures. home: https://bioconductor.org/packages/3.10/bioc/html/bioDist.html identifiers: - biotools:biodist -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-biodist summary: Different distance measures diff --git a/data/biomformat/bioconda_biomformat.yaml b/data/biomformat/bioconda_biomformat.yaml index 3cf5555b217f4..c331b55eb87ee 100644 --- a/data/biomformat/bioconda_biomformat.yaml +++ b/data/biomformat/bioconda_biomformat.yaml @@ -10,7 +10,6 @@ description: This is an R package for interfacing with the BIOM format. This pac home: https://bioconductor.org/packages/3.10/bioc/html/biomformat.html identifiers: - biotools:biomformat -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-biomformat diff --git a/data/biomvcclass/bioconda_biomvcclass.yaml b/data/biomvcclass/bioconda_biomvcclass.yaml index fe5e70023fc79..257b3ddd07c6a 100644 --- a/data/biomvcclass/bioconda_biomvcclass.yaml +++ b/data/biomvcclass/bioconda_biomvcclass.yaml @@ -3,7 +3,6 @@ description: Creates classes used in model-view-controller (MVC) design home: https://bioconductor.org/packages/3.10/bioc/html/BioMVCClass.html identifiers: - biotools:biomvcclass -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-biomvcclass diff --git a/data/biostrings/bioconda_biostrings.yaml b/data/biostrings/bioconda_biostrings.yaml index 80f6cf60cb050..9bb90c23c4e89 100644 --- a/data/biostrings/bioconda_biostrings.yaml +++ b/data/biostrings/bioconda_biostrings.yaml @@ -4,7 +4,6 @@ description: Memory efficient string containers, string matching algorithms, and home: https://bioconductor.org/packages/3.10/bioc/html/Biostrings.html identifiers: - biotools:biostrings -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-biostrings summary: Efficient manipulation of biological strings diff --git a/data/biosvd/bioconda_biosvd.yaml b/data/biosvd/bioconda_biosvd.yaml index d86ab677cda01..45906f5e50373 100644 --- a/data/biosvd/bioconda_biosvd.yaml +++ b/data/biosvd/bioconda_biosvd.yaml @@ -21,7 +21,6 @@ description: The biosvd package contains functions to reduce the input data set home: https://bioconductor.org/packages/3.10/bioc/html/biosvd.html identifiers: - biotools:biosvd -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-biosvd summary: Package for high-throughput data processing, outlier detection, noise removal diff --git a/data/biovizbase/bioconda_biovizbase.yaml b/data/biovizbase/bioconda_biovizbase.yaml index 5bf691c6544ca..31a2bf5c4ca83 100644 --- a/data/biovizbase/bioconda_biovizbase.yaml +++ b/data/biovizbase/bioconda_biovizbase.yaml @@ -6,7 +6,6 @@ description: The biovizBase package is designed to provide a set of utilities, c home: https://bioconductor.org/packages/3.10/bioc/html/biovizBase.html identifiers: - biotools:biovizbase -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-biovizbase summary: Basic graphic utilities for visualization of genomic data. diff --git a/data/blima/bioconda_blima.yaml b/data/blima/bioconda_blima.yaml index 66a36d09597b6..4acb19abcf944 100644 --- a/data/blima/bioconda_blima.yaml +++ b/data/blima/bioconda_blima.yaml @@ -10,7 +10,6 @@ description: Package blima includes several algorithms for the preprocessing of home: https://bioconductor.org/packages/3.10/bioc/html/blima.html identifiers: - biotools:blima -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-blima diff --git a/data/bsgenome/bioconda_bsgenome.yaml b/data/bsgenome/bioconda_bsgenome.yaml index 35f85d436d885..2a7877bdcc1c3 100644 --- a/data/bsgenome/bioconda_bsgenome.yaml +++ b/data/bsgenome/bioconda_bsgenome.yaml @@ -3,7 +3,6 @@ description: Infrastructure shared by all the Biostrings-based genome data packa home: https://bioconductor.org/packages/3.10/bioc/html/BSgenome.html identifiers: - biotools:bsgenome -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-bsgenome summary: Software infrastructure for efficient representation of full genomes and diff --git a/data/bufferedmatrix/bioconda_bufferedmatrix.yaml b/data/bufferedmatrix/bioconda_bufferedmatrix.yaml index c1bb59901ee2f..eb5869f28850a 100644 --- a/data/bufferedmatrix/bioconda_bufferedmatrix.yaml +++ b/data/bufferedmatrix/bioconda_bufferedmatrix.yaml @@ -4,7 +4,6 @@ description: A tabular style data object where most data is stored outside main home: https://bioconductor.org/packages/3.10/bioc/html/BufferedMatrix.html identifiers: - biotools:bufferedmatrix -- doi:10.1038/nmeth.3252 license: LGPL (>= 2) license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-bufferedmatrix diff --git a/data/bufferedmatrixmethods/bioconda_bufferedmatrixmethods.yaml b/data/bufferedmatrixmethods/bioconda_bufferedmatrixmethods.yaml index 69ce4ccd1267b..822220246e37c 100644 --- a/data/bufferedmatrixmethods/bioconda_bufferedmatrixmethods.yaml +++ b/data/bufferedmatrixmethods/bioconda_bufferedmatrixmethods.yaml @@ -3,7 +3,6 @@ description: Microarray analysis methods that use BufferedMatrix objects home: https://bioconductor.org/packages/3.10/bioc/html/BufferedMatrixMethods.html identifiers: - biotools:bufferedmatrixmethods -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-bufferedmatrixmethods diff --git a/data/bus/bioconda_bus.yaml b/data/bus/bioconda_bus.yaml index a4394c01d4bc1..369b0bf01c18d 100644 --- a/data/bus/bioconda_bus.yaml +++ b/data/bus/bioconda_bus.yaml @@ -4,7 +4,6 @@ description: This package can be used to compute associations among genes (gene- home: https://bioconductor.org/packages/3.10/bioc/html/BUS.html identifiers: - biotools:bus -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-bus diff --git a/data/cancerinsilico/bioconda_cancerinsilico.yaml b/data/cancerinsilico/bioconda_cancerinsilico.yaml index cc99b45b2ca8d..adc78d53e51a1 100644 --- a/data/cancerinsilico/bioconda_cancerinsilico.yaml +++ b/data/cancerinsilico/bioconda_cancerinsilico.yaml @@ -6,7 +6,6 @@ description: The CancerInSilico package provides an R interface for running math home: https://bioconductor.org/packages/3.10/bioc/html/CancerInSilico.html identifiers: - biotools:cancerinsilico -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-cancerinsilico diff --git a/data/cancersubtypes/bioconda_cancersubtypes.yaml b/data/cancersubtypes/bioconda_cancersubtypes.yaml index 6e742e386e9f0..d2aaeec892c28 100644 --- a/data/cancersubtypes/bioconda_cancersubtypes.yaml +++ b/data/cancersubtypes/bioconda_cancersubtypes.yaml @@ -6,7 +6,6 @@ description: CancerSubtypes integrates the current common computational biology home: https://bioconductor.org/packages/3.10/bioc/html/CancerSubtypes.html identifiers: - biotools:cancersubtypes -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-cancersubtypes diff --git a/data/category/bioconda_category.yaml b/data/category/bioconda_category.yaml index 3b926110dedf0..e396ed5568051 100644 --- a/data/category/bioconda_category.yaml +++ b/data/category/bioconda_category.yaml @@ -3,7 +3,6 @@ description: A collection of tools for performing category (gene set enrichment) home: https://bioconductor.org/packages/3.10/bioc/html/Category.html identifiers: - biotools:category -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-category summary: Category Analysis diff --git a/data/causalr/bioconda_causalr.yaml b/data/causalr/bioconda_causalr.yaml index 69eaa11119d0f..ec2a0f08545a4 100644 --- a/data/causalr/bioconda_causalr.yaml +++ b/data/causalr/bioconda_causalr.yaml @@ -4,7 +4,6 @@ description: Causal network analysis methods for regulator prediction and networ home: https://bioconductor.org/packages/3.10/bioc/html/CausalR.html identifiers: - biotools:causalr -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-causalr diff --git a/data/cellgrowth/bioconda_cellgrowth.yaml b/data/cellgrowth/bioconda_cellgrowth.yaml index 83d2ae0eda6da..6a80bd6809769 100644 --- a/data/cellgrowth/bioconda_cellgrowth.yaml +++ b/data/cellgrowth/bioconda_cellgrowth.yaml @@ -4,7 +4,6 @@ description: This package provides functionalities for the fitting of cell popul home: https://bioconductor.org/packages/3.10/bioc/html/cellGrowth.html identifiers: - biotools:cellgrowth -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-cellgrowth summary: Fitting cell population growth models diff --git a/data/chipseq/bioconda_chipseq.yaml b/data/chipseq/bioconda_chipseq.yaml index c568c10937e08..a98eb7585e16e 100644 --- a/data/chipseq/bioconda_chipseq.yaml +++ b/data/chipseq/bioconda_chipseq.yaml @@ -3,7 +3,6 @@ description: Tools for helping process short read data for chipseq experiments home: https://bioconductor.org/packages/3.10/bioc/html/chipseq.html identifiers: - biotools:chipseq -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-chipseq summary: 'chipseq: A package for analyzing chipseq data' diff --git a/data/chipsim/bioconda_chipsim.yaml b/data/chipsim/bioconda_chipsim.yaml index e8e2ca0795511..7c3a01c807e01 100644 --- a/data/chipsim/bioconda_chipsim.yaml +++ b/data/chipsim/bioconda_chipsim.yaml @@ -5,7 +5,6 @@ description: A general framework for the simulation of ChIP-seq data. Although c home: https://bioconductor.org/packages/3.10/bioc/html/ChIPsim.html identifiers: - biotools:chipsim -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-chipsim diff --git a/data/chopsticks/bioconda_chopsticks.yaml b/data/chopsticks/bioconda_chopsticks.yaml index 339c219303ecb..c4dc8beaa1ace 100644 --- a/data/chopsticks/bioconda_chopsticks.yaml +++ b/data/chopsticks/bioconda_chopsticks.yaml @@ -3,7 +3,6 @@ description: Implements classes and methods for large-scale SNP association stud home: https://bioconductor.org/packages/3.10/bioc/html/chopsticks.html identifiers: - biotools:chopsticks -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-chopsticks diff --git a/data/chromheatmap/bioconda_chromheatmap.yaml b/data/chromheatmap/bioconda_chromheatmap.yaml index 614321d356a7f..bcc151bb219c2 100644 --- a/data/chromheatmap/bioconda_chromheatmap.yaml +++ b/data/chromheatmap/bioconda_chromheatmap.yaml @@ -5,7 +5,6 @@ description: The ChromHeatMap package can be used to plot genome-wide data (e.g. home: https://bioconductor.org/packages/3.10/bioc/html/ChromHeatMap.html identifiers: - biotools:chromheatmap -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-chromheatmap summary: Heat map plotting by genome coordinate diff --git a/data/cindex/bioconda_cindex.yaml b/data/cindex/bioconda_cindex.yaml index e26d74b2db98b..27fafe20bfc2c 100644 --- a/data/cindex/bioconda_cindex.yaml +++ b/data/cindex/bioconda_cindex.yaml @@ -10,7 +10,6 @@ description: The CINdex package addresses important area of high-throughput geno home: https://bioconductor.org/packages/3.10/bioc/html/CINdex.html identifiers: - biotools:cindex -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-cindex diff --git a/data/cleaver/bioconda_cleaver.yaml b/data/cleaver/bioconda_cleaver.yaml index 6dead78bf7674..b0a9b1eb93e0b 100644 --- a/data/cleaver/bioconda_cleaver.yaml +++ b/data/cleaver/bioconda_cleaver.yaml @@ -4,7 +4,6 @@ description: 'In-silico cleavage of polypeptide sequences. The cleavage rules ar home: https://bioconductor.org/packages/3.10/bioc/html/cleaver.html identifiers: - biotools:cleaver -- doi:10.1038/nmeth.3252 license: GPL (>= 3) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-cleaver diff --git a/data/clst/bioconda_clst.yaml b/data/clst/bioconda_clst.yaml index 77a8169846517..51605eb834423 100644 --- a/data/clst/bioconda_clst.yaml +++ b/data/clst/bioconda_clst.yaml @@ -4,7 +4,6 @@ description: Package for modified nearest-neighbor classification based on calcu home: https://bioconductor.org/packages/3.10/bioc/html/clst.html identifiers: - biotools:clst -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-clst diff --git a/data/clstutils/bioconda_clstutils.yaml b/data/clstutils/bioconda_clstutils.yaml index 07871e44e99b0..7db48c4d5aa6f 100644 --- a/data/clstutils/bioconda_clstutils.yaml +++ b/data/clstutils/bioconda_clstutils.yaml @@ -4,7 +4,6 @@ description: Tools for performing taxonomic assignment based on phylogeny using home: https://bioconductor.org/packages/3.10/bioc/html/clstutils.html identifiers: - biotools:clstutils -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-clstutils diff --git a/data/clustcomp/bioconda_clustcomp.yaml b/data/clustcomp/bioconda_clustcomp.yaml index e56fe03a16ce8..2b891e7a69796 100644 --- a/data/clustcomp/bioconda_clustcomp.yaml +++ b/data/clustcomp/bioconda_clustcomp.yaml @@ -16,7 +16,6 @@ description: clustComp is a package that implements several techniques for the c home: https://bioconductor.org/packages/3.10/bioc/html/clustComp.html identifiers: - biotools:clustcomp -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-clustcomp diff --git a/data/clustersignificance/bioconda_clustersignificance.yaml b/data/clustersignificance/bioconda_clustersignificance.yaml index 01886a21a1c4d..4d3e24383efc5 100644 --- a/data/clustersignificance/bioconda_clustersignificance.yaml +++ b/data/clustersignificance/bioconda_clustersignificance.yaml @@ -11,7 +11,6 @@ description: The ClusterSignificance package provides tools to assess if class c home: https://bioconductor.org/packages/3.10/bioc/html/ClusterSignificance.html identifiers: - biotools:clustersignificance -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-clustersignificance diff --git a/data/clusterstab/bioconda_clusterstab.yaml b/data/clusterstab/bioconda_clusterstab.yaml index b2dbe95ebae61..4ff0ae81d483a 100644 --- a/data/clusterstab/bioconda_clusterstab.yaml +++ b/data/clusterstab/bioconda_clusterstab.yaml @@ -4,7 +4,6 @@ description: This package can be used to estimate the number of clusters in a se home: https://bioconductor.org/packages/3.10/bioc/html/clusterStab.html identifiers: - biotools:clusterstab -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-clusterstab summary: Compute cluster stability scores for microarray data diff --git a/data/cner/bioconda_cner.yaml b/data/cner/bioconda_cner.yaml index d6e2400377ee3..1d3b766d4e2fc 100644 --- a/data/cner/bioconda_cner.yaml +++ b/data/cner/bioconda_cner.yaml @@ -4,7 +4,6 @@ description: Large-scale identification and advanced visualization of sets of co home: https://bioconductor.org/packages/3.10/bioc/html/CNEr.html identifiers: - biotools:cner -- doi:10.1038/nmeth.3252 license: GPL-2 | file LICENSE license_file: LICENSE name: bioconductor-cner diff --git a/data/cntools/bioconda_cntools.yaml b/data/cntools/bioconda_cntools.yaml index f38864fdc03e6..18fada4140a1f 100644 --- a/data/cntools/bioconda_cntools.yaml +++ b/data/cntools/bioconda_cntools.yaml @@ -5,7 +5,6 @@ description: This package provides tools to convert the output of segmentation a home: https://bioconductor.org/packages/3.10/bioc/html/CNTools.html identifiers: - biotools:cntools -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-cntools diff --git a/data/cnvgsa/bioconda_cnvgsa.yaml b/data/cnvgsa/bioconda_cnvgsa.yaml index 774dcac3edd76..aa936181314ef 100644 --- a/data/cnvgsa/bioconda_cnvgsa.yaml +++ b/data/cnvgsa/bioconda_cnvgsa.yaml @@ -4,7 +4,6 @@ description: This package is intended to facilitate gene-set association with ra home: https://bioconductor.org/packages/3.10/bioc/html/cnvGSA.html identifiers: - biotools:cnvgsa -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-cnvgsa diff --git a/data/cnvpanelizer/bioconda_cnvpanelizer.yaml b/data/cnvpanelizer/bioconda_cnvpanelizer.yaml index 6957386b24497..658d65d35676c 100644 --- a/data/cnvpanelizer/bioconda_cnvpanelizer.yaml +++ b/data/cnvpanelizer/bioconda_cnvpanelizer.yaml @@ -9,7 +9,6 @@ description: A method that allows for the use of a collection of non-matched nor home: https://bioconductor.org/packages/3.10/bioc/html/CNVPanelizer.html identifiers: - biotools:cnvpanelizer -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-cnvpanelizer diff --git a/data/cogps/bioconda_cogps.yaml b/data/cogps/bioconda_cogps.yaml index a99f5390cb544..6b7488bf3ce19 100644 --- a/data/cogps/bioconda_cogps.yaml +++ b/data/cogps/bioconda_cogps.yaml @@ -4,7 +4,6 @@ description: Gene Set Enrichment Analysis of P-value based statistics for outlie home: https://bioconductor.org/packages/3.10/bioc/html/coGPS.html identifiers: - biotools:cogps -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-cogps diff --git a/data/convert/bioconda_convert.yaml b/data/convert/bioconda_convert.yaml index 6ef424901d98e..44fa2e6447a59 100644 --- a/data/convert/bioconda_convert.yaml +++ b/data/convert/bioconda_convert.yaml @@ -3,7 +3,6 @@ description: Define coerce methods for microarray data objects. home: https://bioconductor.org/packages/3.10/bioc/html/convert.html identifiers: - biotools:convert -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-convert diff --git a/data/correp/bioconda_correp.yaml b/data/correp/bioconda_correp.yaml index 1fb71025fcc8e..4ebb8c6c06f51 100644 --- a/data/correp/bioconda_correp.yaml +++ b/data/correp/bioconda_correp.yaml @@ -4,7 +4,6 @@ description: Multivariate correlation estimation and statistical inference. See home: https://bioconductor.org/packages/3.10/bioc/html/CORREP.html identifiers: - biotools:correp -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-correp diff --git a/data/covrna/bioconda_covrna.yaml b/data/covrna/bioconda_covrna.yaml index fd9c53c3656e4..424b3b31f6273 100644 --- a/data/covrna/bioconda_covrna.yaml +++ b/data/covrna/bioconda_covrna.yaml @@ -4,7 +4,6 @@ description: This package provides the analysis methods fourthcorner and RLQ ana home: https://bioconductor.org/packages/3.10/bioc/html/covRNA.html identifiers: - biotools:covrna -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-covrna diff --git a/data/cpvsnp/bioconda_cpvsnp.yaml b/data/cpvsnp/bioconda_cpvsnp.yaml index 232aea355d375..c1cf5e3a93928 100644 --- a/data/cpvsnp/bioconda_cpvsnp.yaml +++ b/data/cpvsnp/bioconda_cpvsnp.yaml @@ -9,7 +9,6 @@ description: Gene set analysis methods exist to combine SNP-level association p- home: https://bioconductor.org/packages/3.10/bioc/html/cpvSNP.html identifiers: - biotools:cpvsnp -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-cpvsnp summary: Gene set analysis methods for SNP association p-values that lie in genes diff --git a/data/ctc/bioconda_ctc.yaml b/data/ctc/bioconda_ctc.yaml index 2e53389b033c0..0d386d76ed31d 100644 --- a/data/ctc/bioconda_ctc.yaml +++ b/data/ctc/bioconda_ctc.yaml @@ -4,7 +4,6 @@ description: Tools for export and import classification trees and clusters to ot home: https://bioconductor.org/packages/3.10/bioc/html/ctc.html identifiers: - biotools:ctc -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-ctc diff --git a/data/dcgsa/bioconda_dcgsa.yaml b/data/dcgsa/bioconda_dcgsa.yaml index b51586f3b66fa..21b8d19877a96 100644 --- a/data/dcgsa/bioconda_dcgsa.yaml +++ b/data/dcgsa/bioconda_dcgsa.yaml @@ -9,7 +9,6 @@ description: Distance-correlation based Gene Set Analysis for longitudinal gene home: https://bioconductor.org/packages/3.10/bioc/html/dcGSA.html identifiers: - biotools:dcgsa -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-dcgsa diff --git a/data/ddct/bioconda_ddct.yaml b/data/ddct/bioconda_ddct.yaml index 8194bc9b64a95..cfaa8ad3cc29a 100644 --- a/data/ddct/bioconda_ddct.yaml +++ b/data/ddct/bioconda_ddct.yaml @@ -11,7 +11,6 @@ description: The Delta-Delta-Ct (ddCt) Algorithm is an approximation method to d home: https://bioconductor.org/packages/3.10/bioc/html/ddCt.html identifiers: - biotools:ddct -- doi:10.1038/nmeth.3252 license: LGPL-3 license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-ddct diff --git a/data/deformats/bioconda_deformats.yaml b/data/deformats/bioconda_deformats.yaml index 20a5175eb5faf..c9b2a34327272 100644 --- a/data/deformats/bioconda_deformats.yaml +++ b/data/deformats/bioconda_deformats.yaml @@ -4,7 +4,6 @@ description: Convert between different data formats used by differential gene ex home: https://bioconductor.org/packages/3.10/bioc/html/DEFormats.html identifiers: - biotools:deformats -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-deformats diff --git a/data/degreport/bioconda_degreport.yaml b/data/degreport/bioconda_degreport.yaml index d1834162d84e6..3826a7ed5a25e 100644 --- a/data/degreport/bioconda_degreport.yaml +++ b/data/degreport/bioconda_degreport.yaml @@ -6,7 +6,6 @@ description: Creation of a HTML report of differential expression analyses of co home: https://bioconductor.org/packages/3.10/bioc/html/DEGreport.html identifiers: - biotools:degreport -- doi:10.1038/nmeth.3252 license: MIT + file LICENSE license_file: LICENSE name: bioconductor-degreport diff --git a/data/demand/bioconda_demand.yaml b/data/demand/bioconda_demand.yaml index 585b2d185553c..f0756d5b444b9 100644 --- a/data/demand/bioconda_demand.yaml +++ b/data/demand/bioconda_demand.yaml @@ -6,7 +6,6 @@ description: DEMAND predicts Drug MoA by interrogating a cell context specific r home: https://bioconductor.org/packages/3.10/bioc/html/DeMAND.html identifiers: - biotools:demand -- doi:10.1038/nmeth.3252 license: file LICENSE license_file: LICENSE name: bioconductor-demand diff --git a/data/dfp/bioconda_dfp.yaml b/data/dfp/bioconda_dfp.yaml index 2eae76c44b4d9..15de95439f1d7 100644 --- a/data/dfp/bioconda_dfp.yaml +++ b/data/dfp/bioconda_dfp.yaml @@ -6,7 +6,6 @@ description: This package provides a supervised technique able to identify diffe home: https://bioconductor.org/packages/3.10/bioc/html/DFP.html identifiers: - biotools:dfp -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-dfp diff --git a/data/diffgeneanalysis/bioconda_diffgeneanalysis.yaml b/data/diffgeneanalysis/bioconda_diffgeneanalysis.yaml index ba773cec18bde..fa72e9c42d8a4 100644 --- a/data/diffgeneanalysis/bioconda_diffgeneanalysis.yaml +++ b/data/diffgeneanalysis/bioconda_diffgeneanalysis.yaml @@ -3,7 +3,6 @@ description: Analyze microarray data home: https://bioconductor.org/packages/3.10/bioc/html/diffGeneAnalysis.html identifiers: - biotools:diffgeneanalysis -- doi:10.1038/nmeth.3252 license: GPL license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-diffgeneanalysis diff --git a/data/director/bioconda_director.yaml b/data/director/bioconda_director.yaml index e6d12e15656b1..f76bdf4d2cfff 100644 --- a/data/director/bioconda_director.yaml +++ b/data/director/bioconda_director.yaml @@ -11,7 +11,6 @@ description: Director is an R package designed to streamline the visualization o home: https://bioconductor.org/packages/3.10/bioc/html/Director.html identifiers: - biotools:director -- doi:10.1038/nmeth.3252 license: GPL-3 + file LICENSE license_file: LICENSE name: bioconductor-director diff --git a/data/dnacopy/bioconda_dnacopy.yaml b/data/dnacopy/bioconda_dnacopy.yaml index 075842bf98920..d60b0a4ba795c 100644 --- a/data/dnacopy/bioconda_dnacopy.yaml +++ b/data/dnacopy/bioconda_dnacopy.yaml @@ -4,7 +4,6 @@ description: Implements the circular binary segmentation (CBS) algorithm to segm home: https://bioconductor.org/packages/3.10/bioc/html/DNAcopy.html identifiers: - biotools:dnacopy -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-dnacopy diff --git a/data/drugvsdisease/bioconda_drugvsdisease.yaml b/data/drugvsdisease/bioconda_drugvsdisease.yaml index b974d9a7d20be..3c28bbe1b2691 100644 --- a/data/drugvsdisease/bioconda_drugvsdisease.yaml +++ b/data/drugvsdisease/bioconda_drugvsdisease.yaml @@ -9,7 +9,6 @@ description: This package generates ranked lists of differential gene expression home: https://bioconductor.org/packages/3.10/bioc/html/DrugVsDisease.html identifiers: - biotools:drugvsdisease -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-drugvsdisease diff --git a/data/dyndoc/bioconda_dyndoc.yaml b/data/dyndoc/bioconda_dyndoc.yaml index ce48f29f4825e..d7879bc01857e 100644 --- a/data/dyndoc/bioconda_dyndoc.yaml +++ b/data/dyndoc/bioconda_dyndoc.yaml @@ -4,7 +4,6 @@ description: A set of functions to create and interact with dynamic documents an home: https://bioconductor.org/packages/3.10/bioc/html/DynDoc.html identifiers: - biotools:dyndoc -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-dyndoc summary: Dynamic document tools diff --git a/data/ebsea/bioconda_ebsea.yaml b/data/ebsea/bioconda_ebsea.yaml index 6ba4dcb2420fe..abce180096559 100644 --- a/data/ebsea/bioconda_ebsea.yaml +++ b/data/ebsea/bioconda_ebsea.yaml @@ -4,7 +4,6 @@ description: Calculates differential expression of genes based on exon counts of home: https://bioconductor.org/packages/3.10/bioc/html/EBSEA.html identifiers: - biotools:ebsea -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-ebsea diff --git a/data/encodexplorer/bioconda_encodexplorer.yaml b/data/encodexplorer/bioconda_encodexplorer.yaml index a5af9acf85e81..1b6b58d0356a9 100644 --- a/data/encodexplorer/bioconda_encodexplorer.yaml +++ b/data/encodexplorer/bioconda_encodexplorer.yaml @@ -5,7 +5,6 @@ description: This package allows user to quickly access ENCODE project files met home: https://bioconductor.org/packages/3.10/bioc/html/ENCODExplorer.html identifiers: - biotools:encodexplorer -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-encodexplorer summary: A compilation of ENCODE metadata diff --git a/data/ensembldb/bioconda_ensembldb.yaml b/data/ensembldb/bioconda_ensembldb.yaml index fd2c000b42d69..94a5722a2d83f 100644 --- a/data/ensembldb/bioconda_ensembldb.yaml +++ b/data/ensembldb/bioconda_ensembldb.yaml @@ -12,7 +12,6 @@ description: The package provides functions to create and use transcript centric home: https://bioconductor.org/packages/3.10/bioc/html/ensembldb.html identifiers: - biotools:ensembldb -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-ensembldb diff --git a/data/epivizrdata/bioconda_epivizrdata.yaml b/data/epivizrdata/bioconda_epivizrdata.yaml index 525770b0b0daf..673af036d0c32 100644 --- a/data/epivizrdata/bioconda_epivizrdata.yaml +++ b/data/epivizrdata/bioconda_epivizrdata.yaml @@ -3,7 +3,6 @@ description: Serve data from Bioconductor Objects through a WebSocket connection home: https://bioconductor.org/packages/3.10/bioc/html/epivizrData.html identifiers: - biotools:epivizrdata -- doi:10.1038/nmeth.3252 license: MIT + file LICENSE license_file: LICENSE name: bioconductor-epivizrdata diff --git a/data/epivizrserver/bioconda_epivizrserver.yaml b/data/epivizrserver/bioconda_epivizrserver.yaml index b07b194e2d81d..e2aeb7484a6f8 100644 --- a/data/epivizrserver/bioconda_epivizrserver.yaml +++ b/data/epivizrserver/bioconda_epivizrserver.yaml @@ -4,7 +4,6 @@ description: This package provides objects to manage WebSocket connections to ep home: https://bioconductor.org/packages/3.10/bioc/html/epivizrServer.html identifiers: - biotools:epivizrserver -- doi:10.1038/nmeth.3252 license: MIT + file LICENSE license_file: LICENSE name: bioconductor-epivizrserver diff --git a/data/epivizrstandalone/bioconda_epivizrstandalone.yaml b/data/epivizrstandalone/bioconda_epivizrstandalone.yaml index 36b3d7631ccff..3f7912d43bc28 100644 --- a/data/epivizrstandalone/bioconda_epivizrstandalone.yaml +++ b/data/epivizrstandalone/bioconda_epivizrstandalone.yaml @@ -6,7 +6,6 @@ description: This package imports the epiviz visualization JavaScript app for ge home: https://bioconductor.org/packages/3.10/bioc/html/epivizrStandalone.html identifiers: - biotools:epivizrstandalone -- doi:10.1038/nmeth.3252 license: MIT + file LICENSE license_file: LICENSE name: bioconductor-epivizrstandalone diff --git a/data/esetvis/bioconda_esetvis.yaml b/data/esetvis/bioconda_esetvis.yaml index 81262efcbb8f1..d8946c67d867d 100644 --- a/data/esetvis/bioconda_esetvis.yaml +++ b/data/esetvis/bioconda_esetvis.yaml @@ -6,7 +6,6 @@ description: Utility functions for visualization of expressionSet (or Summarized home: https://bioconductor.org/packages/3.10/bioc/html/esetVis.html identifiers: - biotools:esetvis -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-esetvis diff --git a/data/findmyfriends/bioconda_findmyfriends.yaml b/data/findmyfriends/bioconda_findmyfriends.yaml index b418f7be0de61..c9a987aba56ff 100644 --- a/data/findmyfriends/bioconda_findmyfriends.yaml +++ b/data/findmyfriends/bioconda_findmyfriends.yaml @@ -8,7 +8,6 @@ description: A framework for doing microbial comparative genomics in R. The main home: https://bioconductor.org/packages/3.10/bioc/html/FindMyFriends.html identifiers: - biotools:findmyfriends -- doi:10.1038/nmeth.3252 license: GPL (>=2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-findmyfriends diff --git a/data/fishalyser/bioconda_fishalyser.yaml b/data/fishalyser/bioconda_fishalyser.yaml index 3f5bd71e5e24c..1417e37993347 100644 --- a/data/fishalyser/bioconda_fishalyser.yaml +++ b/data/fishalyser/bioconda_fishalyser.yaml @@ -6,7 +6,6 @@ description: FISHalyseR provides functionality to process and analyse digital ce home: https://bioconductor.org/packages/3.10/bioc/html/FISHalyseR.html identifiers: - biotools:fishalyser -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-fishalyser summary: FISHalyseR a package for automated FISH quantification diff --git a/data/flagme/bioconda_flagme.yaml b/data/flagme/bioconda_flagme.yaml index b25328b0fa37d..9ab93ec661d86 100644 --- a/data/flagme/bioconda_flagme.yaml +++ b/data/flagme/bioconda_flagme.yaml @@ -4,7 +4,6 @@ description: Fragment-level analysis of gas chromatography - mass spectrometry m home: https://bioconductor.org/packages/3.10/bioc/html/flagme.html identifiers: - biotools:flagme -- doi:10.1038/nmeth.3252 license: LGPL (>= 2) license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-flagme diff --git a/data/flowbeads/bioconda_flowbeads.yaml b/data/flowbeads/bioconda_flowbeads.yaml index 233fb7b27fa8f..3c5b960b91a29 100644 --- a/data/flowbeads/bioconda_flowbeads.yaml +++ b/data/flowbeads/bioconda_flowbeads.yaml @@ -5,7 +5,6 @@ description: This package extends flowCore to provide functionality specific to home: https://bioconductor.org/packages/3.10/bioc/html/flowBeads.html identifiers: - biotools:flowbeads -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-flowbeads summary: 'flowBeads: Analysis of flow bead data' diff --git a/data/flowmatch/bioconda_flowmatch.yaml b/data/flowmatch/bioconda_flowmatch.yaml index 1a5cb6012377f..44e3714ae9f7f 100644 --- a/data/flowmatch/bioconda_flowmatch.yaml +++ b/data/flowmatch/bioconda_flowmatch.yaml @@ -4,7 +4,6 @@ description: Matching cell populations and building meta-clusters and templates home: https://bioconductor.org/packages/3.10/bioc/html/flowMatch.html identifiers: - biotools:flowmatch -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-flowmatch summary: Matching and meta-clustering in flow cytometry diff --git a/data/flowploidy/bioconda_flowploidy.yaml b/data/flowploidy/bioconda_flowploidy.yaml index c9a40c1c277db..3cddc5ac4ed29 100644 --- a/data/flowploidy/bioconda_flowploidy.yaml +++ b/data/flowploidy/bioconda_flowploidy.yaml @@ -5,7 +5,6 @@ description: Determine sample ploidy via flow cytometry histogram analysis. Read home: https://bioconductor.org/packages/3.10/bioc/html/flowPloidy.html identifiers: - biotools:flowploidy -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-flowploidy diff --git a/data/gcrisprtools/bioconda_gcrisprtools.yaml b/data/gcrisprtools/bioconda_gcrisprtools.yaml index b15018bfe51d2..88e9475e89df3 100644 --- a/data/gcrisprtools/bioconda_gcrisprtools.yaml +++ b/data/gcrisprtools/bioconda_gcrisprtools.yaml @@ -7,7 +7,6 @@ description: Set of tools for evaluating pooled high-throughput screening experi home: https://bioconductor.org/packages/3.10/bioc/html/gCrisprTools.html identifiers: - biotools:gcrisprtools -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-gcrisprtools summary: Suite of Functions for Pooled Crispr Screen QC and Analysis diff --git a/data/genbankr/bioconda_genbankr.yaml b/data/genbankr/bioconda_genbankr.yaml index 10242b77b4e6f..821d9ff871b1c 100644 --- a/data/genbankr/bioconda_genbankr.yaml +++ b/data/genbankr/bioconda_genbankr.yaml @@ -3,7 +3,6 @@ description: Reads Genbank files. home: https://bioconductor.org/packages/3.10/bioc/html/genbankr.html identifiers: - biotools:genbankr -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-genbankr summary: Parsing GenBank files into semantically useful objects diff --git a/data/genefilter/bioconda_genefilter.yaml b/data/genefilter/bioconda_genefilter.yaml index b9fd7945a6e72..f344bc13d0f14 100644 --- a/data/genefilter/bioconda_genefilter.yaml +++ b/data/genefilter/bioconda_genefilter.yaml @@ -3,7 +3,6 @@ description: Some basic functions for filtering genes. home: https://bioconductor.org/packages/3.10/bioc/html/genefilter.html identifiers: - biotools:genefilter -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-genefilter summary: 'genefilter: methods for filtering genes from high-throughput experiments' diff --git a/data/genemeta/bioconda_genemeta.yaml b/data/genemeta/bioconda_genemeta.yaml index ca5e52298701d..53c7964ebff1f 100644 --- a/data/genemeta/bioconda_genemeta.yaml +++ b/data/genemeta/bioconda_genemeta.yaml @@ -4,7 +4,6 @@ description: A collection of meta-analysis tools for analysing high throughput e home: https://bioconductor.org/packages/3.10/bioc/html/GeneMeta.html identifiers: - biotools:genemeta -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-genemeta summary: MetaAnalysis for High Throughput Experiments diff --git a/data/geneplast/bioconda_geneplast.yaml b/data/geneplast/bioconda_geneplast.yaml index 656e7332fffe1..40f5353042d48 100644 --- a/data/geneplast/bioconda_geneplast.yaml +++ b/data/geneplast/bioconda_geneplast.yaml @@ -7,7 +7,6 @@ description: Geneplast is designed for evolutionary and plasticity analysis base home: https://bioconductor.org/packages/3.10/bioc/html/geneplast.html identifiers: - biotools:geneplast -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-geneplast diff --git a/data/geneplotter/bioconda_geneplotter.yaml b/data/geneplotter/bioconda_geneplotter.yaml index 469a66720e2b2..d8c3c3a2b16be 100644 --- a/data/geneplotter/bioconda_geneplotter.yaml +++ b/data/geneplotter/bioconda_geneplotter.yaml @@ -3,7 +3,6 @@ description: Functions for plotting genomic data home: https://bioconductor.org/packages/3.10/bioc/html/geneplotter.html identifiers: - biotools:geneplotter -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-geneplotter summary: Graphics related functions for Bioconductor diff --git a/data/geneticsdesign/bioconda_geneticsdesign.yaml b/data/geneticsdesign/bioconda_geneticsdesign.yaml index ce0b35c438422..a38938baf49f2 100644 --- a/data/geneticsdesign/bioconda_geneticsdesign.yaml +++ b/data/geneticsdesign/bioconda_geneticsdesign.yaml @@ -4,7 +4,6 @@ description: This package contains functions useful for designing genetics studi home: https://bioconductor.org/packages/3.10/bioc/html/GeneticsDesign.html identifiers: - biotools:geneticsdesign -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-geneticsdesign diff --git a/data/genomeinfodb/bioconda_genomeinfodb.yaml b/data/genomeinfodb/bioconda_genomeinfodb.yaml index 878730d3670ee..5c0ccc5d44e35 100644 --- a/data/genomeinfodb/bioconda_genomeinfodb.yaml +++ b/data/genomeinfodb/bioconda_genomeinfodb.yaml @@ -6,7 +6,6 @@ description: Contains data and functions that define and allow translation betwe home: https://bioconductor.org/packages/3.10/bioc/html/GenomeInfoDb.html identifiers: - biotools:genomeinfodb -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-genomeinfodb summary: Utilities for manipulating chromosome names, including modifying them to diff --git a/data/genomeintervals/bioconda_genomeintervals.yaml b/data/genomeintervals/bioconda_genomeintervals.yaml index 3e358ab018467..286f9c959b08f 100644 --- a/data/genomeintervals/bioconda_genomeintervals.yaml +++ b/data/genomeintervals/bioconda_genomeintervals.yaml @@ -5,7 +5,6 @@ description: 'This package defines classes for representing genomic intervals an home: https://bioconductor.org/packages/3.10/bioc/html/genomeIntervals.html identifiers: - biotools:genomeintervals -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-genomeintervals summary: Operations on genomic intervals diff --git a/data/genomicfiles/bioconda_genomicfiles.yaml b/data/genomicfiles/bioconda_genomicfiles.yaml index 22bb0a4821b94..17951a3917c44 100644 --- a/data/genomicfiles/bioconda_genomicfiles.yaml +++ b/data/genomicfiles/bioconda_genomicfiles.yaml @@ -5,7 +5,6 @@ description: This package provides infrastructure for parallel computations dist home: https://bioconductor.org/packages/3.10/bioc/html/GenomicFiles.html identifiers: - biotools:genomicfiles -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-genomicfiles summary: Distributed computing by file or by range diff --git a/data/genominator/bioconda_genominator.yaml b/data/genominator/bioconda_genominator.yaml index ab0eb7f144513..d317d24dff085 100644 --- a/data/genominator/bioconda_genominator.yaml +++ b/data/genominator/bioconda_genominator.yaml @@ -3,7 +3,6 @@ description: Tools for storing, accessing, analyzing and visualizing genomic dat home: https://bioconductor.org/packages/3.10/bioc/html/Genominator.html identifiers: - biotools:genominator -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-genominator summary: Analyze, manage and store genomic data diff --git a/data/genoset/bioconda_genoset.yaml b/data/genoset/bioconda_genoset.yaml index 84bb19ad576f8..a914f14eb66ea 100644 --- a/data/genoset/bioconda_genoset.yaml +++ b/data/genoset/bioconda_genoset.yaml @@ -7,7 +7,6 @@ description: GenoSet provides an extension of the RangedSummarizedExperiment cla home: https://bioconductor.org/packages/3.10/bioc/html/genoset.html identifiers: - biotools:genoset -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-genoset summary: A RangedSummarizedExperiment with methods for copy number analysis diff --git a/data/geosubmission/bioconda_geosubmission.yaml b/data/geosubmission/bioconda_geosubmission.yaml index ad30ac1824819..721d30c1dc102 100644 --- a/data/geosubmission/bioconda_geosubmission.yaml +++ b/data/geosubmission/bioconda_geosubmission.yaml @@ -4,7 +4,6 @@ description: Helps to easily submit a microarray dataset and the associated samp home: https://bioconductor.org/packages/3.10/bioc/html/GEOsubmission.html identifiers: - biotools:geosubmission -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-geosubmission diff --git a/data/ggbase/bioconda_ggbase.yaml b/data/ggbase/bioconda_ggbase.yaml index b9e79abc18b67..8e36e01774e0a 100644 --- a/data/ggbase/bioconda_ggbase.yaml +++ b/data/ggbase/bioconda_ggbase.yaml @@ -3,7 +3,6 @@ description: infrastructure home: https://bioconductor.org/packages/3.10/bioc/html/GGBase.html identifiers: - biotools:ggbase -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-ggbase summary: GGBase infrastructure for genetics of gene expression package GGtools diff --git a/data/ggcyto/bioconda_ggcyto.yaml b/data/ggcyto/bioconda_ggcyto.yaml index 524a20f8973a5..8e6171f2c46f3 100644 --- a/data/ggcyto/bioconda_ggcyto.yaml +++ b/data/ggcyto/bioconda_ggcyto.yaml @@ -6,7 +6,6 @@ description: With the dedicated fortify method implemented for flowSet, ncdfFlow home: https://bioconductor.org/packages/3.10/bioc/html/ggcyto.html identifiers: - biotools:ggcyto -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-ggcyto summary: Visualize Cytometry data with ggplot diff --git a/data/gmrp/bioconda_gmrp.yaml b/data/gmrp/bioconda_gmrp.yaml index b1b975daeecf0..489a4fccbbdeb 100644 --- a/data/gmrp/bioconda_gmrp.yaml +++ b/data/gmrp/bioconda_gmrp.yaml @@ -5,7 +5,6 @@ description: Perform Mendelian randomization analysis of multiple SNPs to determ home: https://bioconductor.org/packages/3.10/bioc/html/GMRP.html identifiers: - biotools:gmrp -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-gmrp diff --git a/data/gotools/bioconda_gotools.yaml b/data/gotools/bioconda_gotools.yaml index fa04086c0ee20..075df8e930885 100644 --- a/data/gotools/bioconda_gotools.yaml +++ b/data/gotools/bioconda_gotools.yaml @@ -4,7 +4,6 @@ description: Wraper functions for description/comparison of oligo ID list using home: https://bioconductor.org/packages/3.10/bioc/html/goTools.html identifiers: - biotools:gotools -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-gotools diff --git a/data/graph/bioconda_graph.yaml b/data/graph/bioconda_graph.yaml index 2a19b196aed57..888da34a9a1b6 100644 --- a/data/graph/bioconda_graph.yaml +++ b/data/graph/bioconda_graph.yaml @@ -3,7 +3,6 @@ description: A package that implements some simple graph handling capabilities. home: https://bioconductor.org/packages/3.10/bioc/html/graph.html identifiers: - biotools:graph -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-graph summary: 'graph: A package to handle graph data structures' diff --git a/data/grmetrics/bioconda_grmetrics.yaml b/data/grmetrics/bioconda_grmetrics.yaml index d21a7be3c63e7..c4f69b3973fad 100644 --- a/data/grmetrics/bioconda_grmetrics.yaml +++ b/data/grmetrics/bioconda_grmetrics.yaml @@ -4,7 +4,6 @@ description: Functions for calculating and visualizing growth-rate inhibition (G home: https://bioconductor.org/packages/3.10/bioc/html/GRmetrics.html identifiers: - biotools:grmetrics -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-grmetrics diff --git a/data/gseabase/bioconda_gseabase.yaml b/data/gseabase/bioconda_gseabase.yaml index 4a3a4a2044eeb..ac591c8217c37 100644 --- a/data/gseabase/bioconda_gseabase.yaml +++ b/data/gseabase/bioconda_gseabase.yaml @@ -4,7 +4,6 @@ description: This package provides classes and methods to support Gene Set Enric home: https://bioconductor.org/packages/3.10/bioc/html/GSEABase.html identifiers: - biotools:gseabase -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-gseabase summary: Gene set enrichment data structures and methods diff --git a/data/gsri/bioconda_gsri.yaml b/data/gsri/bioconda_gsri.yaml index ebdcb882105d8..3bad325df2977 100644 --- a/data/gsri/bioconda_gsri.yaml +++ b/data/gsri/bioconda_gsri.yaml @@ -4,7 +4,6 @@ description: The GSRI package estimates the number of differentially expressed g home: https://bioconductor.org/packages/3.10/bioc/html/GSRI.html identifiers: - biotools:gsri -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-gsri diff --git a/data/hdf5array/bioconda_hdf5array.yaml b/data/hdf5array/bioconda_hdf5array.yaml index f494ec763a1a3..934ef5e1c2608 100644 --- a/data/hdf5array/bioconda_hdf5array.yaml +++ b/data/hdf5array/bioconda_hdf5array.yaml @@ -9,7 +9,6 @@ description: Implements the HDF5Array and TENxMatrix classes, 2 convenient and m home: https://bioconductor.org/packages/3.10/bioc/html/HDF5Array.html identifiers: - biotools:hdf5array -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-hdf5array summary: HDF5 backend for DelayedArray objects diff --git a/data/heatplus/bioconda_heatplus.yaml b/data/heatplus/bioconda_heatplus.yaml index 56e6546e4a00c..3ab7c08739483 100644 --- a/data/heatplus/bioconda_heatplus.yaml +++ b/data/heatplus/bioconda_heatplus.yaml @@ -7,7 +7,6 @@ description: Display a rectangular heatmap (intensity plot) of a data matrix. By home: https://bioconductor.org/packages/3.10/bioc/html/Heatplus.html identifiers: - biotools:heatplus -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-heatplus diff --git a/data/helloranges/bioconda_helloranges.yaml b/data/helloranges/bioconda_helloranges.yaml index edd5522abe8e5..a01a63d248652 100644 --- a/data/helloranges/bioconda_helloranges.yaml +++ b/data/helloranges/bioconda_helloranges.yaml @@ -5,7 +5,6 @@ description: Translates bedtools command-line invocations to R code calling func home: https://bioconductor.org/packages/3.10/bioc/html/HelloRanges.html identifiers: - biotools:helloranges -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-helloranges diff --git a/data/help/bioconda_help.yaml b/data/help/bioconda_help.yaml index ba11a2bbc7e76..7bc3ecc9550a1 100644 --- a/data/help/bioconda_help.yaml +++ b/data/help/bioconda_help.yaml @@ -4,7 +4,6 @@ description: The package contains a modular pipeline for analysis of HELP microa home: https://bioconductor.org/packages/3.10/bioc/html/HELP.html identifiers: - biotools:help -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-help diff --git a/data/hiannotator/bioconda_hiannotator.yaml b/data/hiannotator/bioconda_hiannotator.yaml index a41ad5a70b954..127a0b766c749 100644 --- a/data/hiannotator/bioconda_hiannotator.yaml +++ b/data/hiannotator/bioconda_hiannotator.yaml @@ -12,7 +12,6 @@ description: 'hiAnnotator contains set of functions which allow users to annotat home: https://bioconductor.org/packages/3.10/bioc/html/hiAnnotator.html identifiers: - biotools:hiannotator -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-hiannotator diff --git a/data/hmmcopy/bioconda_hmmcopy.yaml b/data/hmmcopy/bioconda_hmmcopy.yaml index 7ecbc62913150..238f6d709b04f 100644 --- a/data/hmmcopy/bioconda_hmmcopy.yaml +++ b/data/hmmcopy/bioconda_hmmcopy.yaml @@ -6,7 +6,6 @@ description: Corrects GC and mappability biases for readcounts (i.e. coverage) i home: https://bioconductor.org/packages/3.10/bioc/html/HMMcopy.html identifiers: - biotools:hmmcopy -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-hmmcopy diff --git a/data/hopach/bioconda_hopach.yaml b/data/hopach/bioconda_hopach.yaml index eb70ce664cd53..e2f580bdd9e70 100644 --- a/data/hopach/bioconda_hopach.yaml +++ b/data/hopach/bioconda_hopach.yaml @@ -9,7 +9,6 @@ description: The HOPACH clustering algorithm builds a hierarchical tree of clust home: https://bioconductor.org/packages/3.10/bioc/html/hopach.html identifiers: - biotools:hopach -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-hopach diff --git a/data/hpar/bioconda_hpar.yaml b/data/hpar/bioconda_hpar.yaml index e7d591756fba9..fe6aaebe15ee9 100644 --- a/data/hpar/bioconda_hpar.yaml +++ b/data/hpar/bioconda_hpar.yaml @@ -4,7 +4,6 @@ description: The hpar package provides a simple R interface to and data from the home: https://bioconductor.org/packages/3.10/bioc/html/hpar.html identifiers: - biotools:hpar -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-hpar summary: Human Protein Atlas in R diff --git a/data/hybridmtest/bioconda_hybridmtest.yaml b/data/hybridmtest/bioconda_hybridmtest.yaml index 0c851c92e07b3..72d6385938ed4 100644 --- a/data/hybridmtest/bioconda_hybridmtest.yaml +++ b/data/hybridmtest/bioconda_hybridmtest.yaml @@ -10,7 +10,6 @@ description: Performs hybrid multiple testing that incorporates method selection home: https://bioconductor.org/packages/3.10/bioc/html/HybridMTest.html identifiers: - biotools:hybridmtest -- doi:10.1038/nmeth.3252 license: GPL Version 2 or later license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-hybridmtest diff --git a/data/hyperdraw/bioconda_hyperdraw.yaml b/data/hyperdraw/bioconda_hyperdraw.yaml index 889c54b76c336..7e6890de9356e 100644 --- a/data/hyperdraw/bioconda_hyperdraw.yaml +++ b/data/hyperdraw/bioconda_hyperdraw.yaml @@ -3,7 +3,6 @@ description: Functions for visualizing hypergraphs. home: https://bioconductor.org/packages/3.10/bioc/html/hyperdraw.html identifiers: - biotools:hyperdraw -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-hyperdraw diff --git a/data/hypergraph/bioconda_hypergraph.yaml b/data/hypergraph/bioconda_hypergraph.yaml index c7391147bc4bf..b384e73094f09 100644 --- a/data/hypergraph/bioconda_hypergraph.yaml +++ b/data/hypergraph/bioconda_hypergraph.yaml @@ -4,7 +4,6 @@ description: A package that implements some simple capabilities for representing home: https://bioconductor.org/packages/3.10/bioc/html/hypergraph.html identifiers: - biotools:hypergraph -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-hypergraph summary: A package providing hypergraph data structures diff --git a/data/ibh/bioconda_ibh.yaml b/data/ibh/bioconda_ibh.yaml index 449cfdca17ce2..b4b4ecc8e2c16 100644 --- a/data/ibh/bioconda_ibh.yaml +++ b/data/ibh/bioconda_ibh.yaml @@ -6,7 +6,6 @@ description: This package contains methods for calculating Interaction Based Hom home: https://bioconductor.org/packages/3.10/bioc/html/ibh.html identifiers: - biotools:ibh -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-ibh diff --git a/data/icens/bioconda_icens.yaml b/data/icens/bioconda_icens.yaml index 65e6d79dc446e..1df61685a9eea 100644 --- a/data/icens/bioconda_icens.yaml +++ b/data/icens/bioconda_icens.yaml @@ -3,7 +3,6 @@ description: Many functions for computing the NPMLE for censored and truncated d home: https://bioconductor.org/packages/3.10/bioc/html/Icens.html identifiers: - biotools:icens -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-icens summary: NPMLE for Censored and Truncated Data diff --git a/data/ideoviz/bioconda_ideoviz.yaml b/data/ideoviz/bioconda_ideoviz.yaml index 5aad3108f3439..0694ba63a1d22 100644 --- a/data/ideoviz/bioconda_ideoviz.yaml +++ b/data/ideoviz/bioconda_ideoviz.yaml @@ -4,7 +4,6 @@ description: Plots data associated with arbitrary genomic intervals along chromo home: https://bioconductor.org/packages/3.10/bioc/html/IdeoViz.html identifiers: - biotools:ideoviz -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-ideoviz diff --git a/data/idiogram/bioconda_idiogram.yaml b/data/idiogram/bioconda_idiogram.yaml index 8f53602b0f437..b9cb451c91f9a 100644 --- a/data/idiogram/bioconda_idiogram.yaml +++ b/data/idiogram/bioconda_idiogram.yaml @@ -3,7 +3,6 @@ description: A package for plotting genomic data by chromosomal location home: https://bioconductor.org/packages/3.10/bioc/html/idiogram.html identifiers: - biotools:idiogram -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-idiogram diff --git a/data/imagehts/bioconda_imagehts.yaml b/data/imagehts/bioconda_imagehts.yaml index 11cb687c69dc1..33a14f0906a35 100644 --- a/data/imagehts/bioconda_imagehts.yaml +++ b/data/imagehts/bioconda_imagehts.yaml @@ -8,7 +8,6 @@ description: imageHTS is an R package dedicated to the analysis of high-throughp home: https://bioconductor.org/packages/3.10/bioc/html/imageHTS.html identifiers: - biotools:imagehts -- doi:10.1038/nmeth.3252 license: LGPL-2.1 license_file: /lib/R/share/licenses/LGPL-2.1 name: bioconductor-imagehts diff --git a/data/inpower/bioconda_inpower.yaml b/data/inpower/bioconda_inpower.yaml index 6cf3575b673ff..ded11eaf49273 100644 --- a/data/inpower/bioconda_inpower.yaml +++ b/data/inpower/bioconda_inpower.yaml @@ -4,7 +4,6 @@ description: An R package for computing the number of susceptibility SNPs and po home: https://bioconductor.org/packages/3.10/bioc/html/INPower.html identifiers: - biotools:inpower -- doi:10.1038/nmeth.3252 license: GPL-2 + file LICENSE license_file: LICENSE name: bioconductor-inpower diff --git a/data/interactivedisplay/bioconda_interactivedisplay.yaml b/data/interactivedisplay/bioconda_interactivedisplay.yaml index 5e36697abc908..240ac885bb9ac 100644 --- a/data/interactivedisplay/bioconda_interactivedisplay.yaml +++ b/data/interactivedisplay/bioconda_interactivedisplay.yaml @@ -4,7 +4,6 @@ description: The interactiveDisplay package contains the methods needed to gener home: https://bioconductor.org/packages/3.10/bioc/html/interactiveDisplay.html identifiers: - biotools:interactivedisplay -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-interactivedisplay summary: Package for enabling powerful shiny web displays of Bioconductor objects diff --git a/data/interactivedisplaybase/bioconda_interactivedisplaybase.yaml b/data/interactivedisplaybase/bioconda_interactivedisplaybase.yaml index 248b3285b9a0d..89083fd4cbe07 100644 --- a/data/interactivedisplaybase/bioconda_interactivedisplaybase.yaml +++ b/data/interactivedisplaybase/bioconda_interactivedisplaybase.yaml @@ -4,7 +4,6 @@ description: The interactiveDisplayBase package contains the the basic methods n home: https://bioconductor.org/packages/3.10/bioc/html/interactiveDisplayBase.html identifiers: - biotools:interactivedisplaybase -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-interactivedisplaybase summary: Base package for enabling powerful shiny web displays of Bioconductor objects diff --git a/data/ioniser/bioconda_ioniser.yaml b/data/ioniser/bioconda_ioniser.yaml index be6d8a5010cef..df8f661767911 100644 --- a/data/ioniser/bioconda_ioniser.yaml +++ b/data/ioniser/bioconda_ioniser.yaml @@ -7,7 +7,6 @@ description: IONiseR provides tools for the quality assessment of Oxford Nanopor home: https://bioconductor.org/packages/3.10/bioc/html/IONiseR.html identifiers: - biotools:ioniser -- doi:10.1038/nmeth.3252 license: MIT + file LICENSE license_file: LICENSE name: bioconductor-ioniser diff --git a/data/isolde/bioconda_isolde.yaml b/data/isolde/bioconda_isolde.yaml index 57afb7e9d37f9..1beeaac689ecc 100644 --- a/data/isolde/bioconda_isolde.yaml +++ b/data/isolde/bioconda_isolde.yaml @@ -6,7 +6,6 @@ description: This package provides ISoLDE a new method for identifying imprinted home: https://bioconductor.org/packages/3.10/bioc/html/ISoLDE.html identifiers: - biotools:isolde -- doi:10.1038/nmeth.3252 license: GPL (>= 2.0) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-isolde diff --git a/data/keggorthology/bioconda_keggorthology.yaml b/data/keggorthology/bioconda_keggorthology.yaml index 7d5b1319689b2..9ee4c621bff00 100644 --- a/data/keggorthology/bioconda_keggorthology.yaml +++ b/data/keggorthology/bioconda_keggorthology.yaml @@ -4,7 +4,6 @@ description: graphical representation of the Feb 2010 KEGG Orthology. The KEGG o home: https://bioconductor.org/packages/3.10/bioc/html/keggorthology.html identifiers: - biotools:keggorthology -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-keggorthology summary: graph support for KO, KEGG Orthology diff --git a/data/kimod/bioconda_kimod.yaml b/data/kimod/bioconda_kimod.yaml index 449e1e1006dc0..7f8840611e365 100644 --- a/data/kimod/bioconda_kimod.yaml +++ b/data/kimod/bioconda_kimod.yaml @@ -16,7 +16,6 @@ description: 'This package allows to work with mixed omics data (transcriptomics home: https://bioconductor.org/packages/3.10/bioc/html/kimod.html identifiers: - biotools:kimod -- doi:10.1038/nmeth.3252 license: GPL (>=2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-kimod diff --git a/data/linc/bioconda_linc.yaml b/data/linc/bioconda_linc.yaml index 0becd678c150e..0d4950249f2f6 100644 --- a/data/linc/bioconda_linc.yaml +++ b/data/linc/bioconda_linc.yaml @@ -6,7 +6,6 @@ description: This package provides methods to compute co-expression networks of home: https://bioconductor.org/packages/3.10/bioc/html/LINC.html identifiers: - biotools:linc -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-linc summary: co-expression of lincRNAs and protein-coding genes diff --git a/data/liquidassociation/bioconda_liquidassociation.yaml b/data/liquidassociation/bioconda_liquidassociation.yaml index 280a5f664bdf6..9e480a9a72694 100644 --- a/data/liquidassociation/bioconda_liquidassociation.yaml +++ b/data/liquidassociation/bioconda_liquidassociation.yaml @@ -5,7 +5,6 @@ description: The package contains functions for calculate direct and model-based home: https://bioconductor.org/packages/3.10/bioc/html/LiquidAssociation.html identifiers: - biotools:liquidassociation -- doi:10.1038/nmeth.3252 license: GPL (>=3) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-liquidassociation diff --git a/data/lmgene/bioconda_lmgene.yaml b/data/lmgene/bioconda_lmgene.yaml index d2abbca742baa..576dd416af95e 100644 --- a/data/lmgene/bioconda_lmgene.yaml +++ b/data/lmgene/bioconda_lmgene.yaml @@ -4,7 +4,6 @@ description: LMGene package for analysis of microarray data using a linear model home: https://bioconductor.org/packages/3.10/bioc/html/LMGene.html identifiers: - biotools:lmgene -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-lmgene diff --git a/data/logitt/bioconda_logitt.yaml b/data/logitt/bioconda_logitt.yaml index bdfcfaeb02bf8..16cabda9961a4 100644 --- a/data/logitt/bioconda_logitt.yaml +++ b/data/logitt/bioconda_logitt.yaml @@ -6,7 +6,6 @@ description: The logitT library implements the Logit-t algorithm introduced in - home: https://bioconductor.org/packages/3.10/bioc/html/logitT.html identifiers: - biotools:logitt -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-logitt diff --git a/data/lol/bioconda_lol.yaml b/data/lol/bioconda_lol.yaml index db4e27c1dd833..76b67fa341239 100644 --- a/data/lol/bioconda_lol.yaml +++ b/data/lol/bioconda_lol.yaml @@ -3,7 +3,6 @@ description: Various optimization methods for Lasso inference with matrix warppe home: https://bioconductor.org/packages/3.10/bioc/html/lol.html identifiers: - biotools:lol -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-lol diff --git a/data/lpeadj/bioconda_lpeadj.yaml b/data/lpeadj/bioconda_lpeadj.yaml index 0bc576e6bfccc..17bdb90313876 100644 --- a/data/lpeadj/bioconda_lpeadj.yaml +++ b/data/lpeadj/bioconda_lpeadj.yaml @@ -7,7 +7,6 @@ description: Two options are added to the LPE algorithm. The original LPE method home: https://bioconductor.org/packages/3.10/bioc/html/LPEadj.html identifiers: - biotools:lpeadj -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-lpeadj diff --git a/data/macorrplot/bioconda_macorrplot.yaml b/data/macorrplot/bioconda_macorrplot.yaml index d116bcba3beae..306efa867df33 100644 --- a/data/macorrplot/bioconda_macorrplot.yaml +++ b/data/macorrplot/bioconda_macorrplot.yaml @@ -4,7 +4,6 @@ description: Graphically displays correlation in microarray data that is due to home: https://bioconductor.org/packages/3.10/bioc/html/maCorrPlot.html identifiers: - biotools:macorrplot -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-macorrplot diff --git a/data/maigespack/bioconda_maigespack.yaml b/data/maigespack/bioconda_maigespack.yaml index 96c32f0970a4e..b040c359e7da3 100644 --- a/data/maigespack/bioconda_maigespack.yaml +++ b/data/maigespack/bioconda_maigespack.yaml @@ -4,7 +4,6 @@ description: This package uses functions of various other packages together with home: https://bioconductor.org/packages/3.10/bioc/html/maigesPack.html identifiers: - biotools:maigespack -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-maigespack diff --git a/data/manta/bioconda_manta.yaml b/data/manta/bioconda_manta.yaml index 2ac49b1740e9c..13b181599a46f 100644 --- a/data/manta/bioconda_manta.yaml +++ b/data/manta/bioconda_manta.yaml @@ -3,7 +3,6 @@ description: Tools for robust comparative metatranscriptomics. home: https://bioconductor.org/packages/3.10/bioc/html/manta.html identifiers: - biotools:manta -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-manta summary: Microbial Assemblage Normalized Transcript Analysis diff --git a/data/mantelcorr/bioconda_mantelcorr.yaml b/data/mantelcorr/bioconda_mantelcorr.yaml index a630a6c5c979c..b49b1f859340c 100644 --- a/data/mantelcorr/bioconda_mantelcorr.yaml +++ b/data/mantelcorr/bioconda_mantelcorr.yaml @@ -4,7 +4,6 @@ description: Computes Mantel cluster correlations from a (p x n) numeric data ma home: https://bioconductor.org/packages/3.10/bioc/html/MantelCorr.html identifiers: - biotools:mantelcorr -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-mantelcorr diff --git a/data/matter/bioconda_matter.yaml b/data/matter/bioconda_matter.yaml index 5b142efd5a2d1..da50c9e55c4d4 100644 --- a/data/matter/bioconda_matter.yaml +++ b/data/matter/bioconda_matter.yaml @@ -4,7 +4,6 @@ description: Memory-efficient reading, writing, and manipulation of structured b home: https://bioconductor.org/packages/3.10/bioc/html/matter.html identifiers: - biotools:matter -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-matter summary: A framework for rapid prototyping with file-based data structures diff --git a/data/mcrestimate/bioconda_mcrestimate.yaml b/data/mcrestimate/bioconda_mcrestimate.yaml index f1101c62cb090..b4d298b1cb494 100644 --- a/data/mcrestimate/bioconda_mcrestimate.yaml +++ b/data/mcrestimate/bioconda_mcrestimate.yaml @@ -4,7 +4,6 @@ description: This package includes a function for combining preprocessing and cl home: https://bioconductor.org/packages/3.10/bioc/html/MCRestimate.html identifiers: - biotools:mcrestimate -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-mcrestimate diff --git a/data/measurementerror.cor/bioconda_measurementerror.cor.yaml b/data/measurementerror.cor/bioconda_measurementerror.cor.yaml index 4c3ed6b14efa1..1f5945806570f 100644 --- a/data/measurementerror.cor/bioconda_measurementerror.cor.yaml +++ b/data/measurementerror.cor/bioconda_measurementerror.cor.yaml @@ -4,7 +4,6 @@ description: Two-stage measurement error model for correlation estimation with s home: https://bioconductor.org/packages/3.10/bioc/html/MeasurementError.cor.html identifiers: - biotools:measurementerror.cor -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-measurementerror.cor diff --git a/data/meshes/bioconda_meshes.yaml b/data/meshes/bioconda_meshes.yaml index 87e03c5d0cd1a..699615c081555 100644 --- a/data/meshes/bioconda_meshes.yaml +++ b/data/meshes/bioconda_meshes.yaml @@ -10,7 +10,6 @@ description: MeSH (Medical Subject Headings) is the NLM controlled vocabulary us home: https://bioconductor.org/packages/3.10/bioc/html/meshes.html identifiers: - biotools:meshes -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-meshes summary: MeSH Enrichment and Semantic analyses diff --git a/data/metaseq/bioconda_metaseq.yaml b/data/metaseq/bioconda_metaseq.yaml index 043dab458f4f5..409336456c6d2 100644 --- a/data/metaseq/bioconda_metaseq.yaml +++ b/data/metaseq/bioconda_metaseq.yaml @@ -4,7 +4,6 @@ description: The probabilities by one-sided NOISeq are combined by Fisher's meth home: https://bioconductor.org/packages/3.10/bioc/html/metaSeq.html identifiers: - biotools:metaseq -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-metaseq summary: Meta-analysis of RNA-Seq count data in multiple studies diff --git a/data/methtargetedngs/bioconda_methtargetedngs.yaml b/data/methtargetedngs/bioconda_methtargetedngs.yaml index 918b9330c29d5..4a68f2b696ec3 100644 --- a/data/methtargetedngs/bioconda_methtargetedngs.yaml +++ b/data/methtargetedngs/bioconda_methtargetedngs.yaml @@ -4,7 +4,6 @@ description: Perform step by step methylation analysis of Next Generation Sequen home: https://bioconductor.org/packages/3.10/bioc/html/MethTargetedNGS.html identifiers: - biotools:methtargetedngs -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-methtargetedngs summary: Perform Methylation Analysis on Next Generation Sequencing Data diff --git a/data/methyanalysis/bioconda_methyanalysis.yaml b/data/methyanalysis/bioconda_methyanalysis.yaml index 49aa13b12662a..296975876ffb2 100644 --- a/data/methyanalysis/bioconda_methyanalysis.yaml +++ b/data/methyanalysis/bioconda_methyanalysis.yaml @@ -6,7 +6,6 @@ description: The methyAnalysis package aims for the DNA methylation data analysi home: https://bioconductor.org/packages/3.10/bioc/html/methyAnalysis.html identifiers: - biotools:methyanalysis -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-methyanalysis summary: DNA methylation data analysis and visualization diff --git a/data/michip/bioconda_michip.yaml b/data/michip/bioconda_michip.yaml index a510adcb174bd..fe9d200edbdbc 100644 --- a/data/michip/bioconda_michip.yaml +++ b/data/michip/bioconda_michip.yaml @@ -6,7 +6,6 @@ description: This package takes the MiChip miRNA microarray .grp scanner output home: https://bioconductor.org/packages/3.10/bioc/html/MiChip.html identifiers: - biotools:michip -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-michip diff --git a/data/microrna/bioconda_microrna.yaml b/data/microrna/bioconda_microrna.yaml index 6c11b41592106..4f817ee2db7df 100644 --- a/data/microrna/bioconda_microrna.yaml +++ b/data/microrna/bioconda_microrna.yaml @@ -4,7 +4,6 @@ description: Different data resources for microRNAs and some functions for manip home: https://bioconductor.org/packages/3.10/bioc/html/microRNA.html identifiers: - biotools:microrna -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-microrna summary: Data and functions for dealing with microRNAs diff --git a/data/mirnatap/bioconda_mirnatap.yaml b/data/mirnatap/bioconda_mirnatap.yaml index 3f1d8860bf233..377b437ab7505 100644 --- a/data/mirnatap/bioconda_mirnatap.yaml +++ b/data/mirnatap/bioconda_mirnatap.yaml @@ -7,7 +7,6 @@ description: The package facilitates implementation of workflows requiring miRNA home: https://bioconductor.org/packages/3.10/bioc/html/miRNAtap.html identifiers: - biotools:mirnatap -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-mirnatap diff --git a/data/mlinterfaces/bioconda_mlinterfaces.yaml b/data/mlinterfaces/bioconda_mlinterfaces.yaml index b342af9f591fd..c66e772062a23 100644 --- a/data/mlinterfaces/bioconda_mlinterfaces.yaml +++ b/data/mlinterfaces/bioconda_mlinterfaces.yaml @@ -4,7 +4,6 @@ description: This package provides uniform interfaces to machine learning code f home: https://bioconductor.org/packages/3.10/bioc/html/MLInterfaces.html identifiers: - biotools:mlinterfaces -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-mlinterfaces diff --git a/data/mlseq/bioconda_mlseq.yaml b/data/mlseq/bioconda_mlseq.yaml index 6578955c57454..1aa98b74b3574 100644 --- a/data/mlseq/bioconda_mlseq.yaml +++ b/data/mlseq/bioconda_mlseq.yaml @@ -4,7 +4,6 @@ description: This package applies several machine learning methods, including SV home: https://bioconductor.org/packages/3.10/bioc/html/MLSeq.html identifiers: - biotools:mlseq -- doi:10.1038/nmeth.3252 license: GPL(>=2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-mlseq diff --git a/data/mmdiff2/bioconda_mmdiff2.yaml b/data/mmdiff2/bioconda_mmdiff2.yaml index 98cdb17d07c74..cb7720d2b69d1 100644 --- a/data/mmdiff2/bioconda_mmdiff2.yaml +++ b/data/mmdiff2/bioconda_mmdiff2.yaml @@ -5,7 +5,6 @@ description: This package detects statistically significant differences between home: https://bioconductor.org/packages/3.10/bioc/html/MMDiff2.html identifiers: - biotools:mmdiff2 -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-mmdiff2 summary: Statistical Testing for ChIP-Seq data sets diff --git a/data/motifdb/bioconda_motifdb.yaml b/data/motifdb/bioconda_motifdb.yaml index a85c91052bdca..cb43cfb01c2b7 100644 --- a/data/motifdb/bioconda_motifdb.yaml +++ b/data/motifdb/bioconda_motifdb.yaml @@ -4,7 +4,6 @@ description: More than 9900 annotated position frequency matrices from 14 public home: https://bioconductor.org/packages/3.10/bioc/html/MotifDb.html identifiers: - biotools:motifdb -- doi:10.1038/nmeth.3252 license: Artistic-2.0 | file LICENSE license_file: LICENSE name: bioconductor-motifdb diff --git a/data/motifstack/bioconda_motifstack.yaml b/data/motifstack/bioconda_motifstack.yaml index 0c71a5f9dd136..bc5a15e666ac0 100644 --- a/data/motifstack/bioconda_motifstack.yaml +++ b/data/motifstack/bioconda_motifstack.yaml @@ -6,7 +6,6 @@ description: The motifStack package is designed for graphic representation of mu home: https://bioconductor.org/packages/3.10/bioc/html/motifStack.html identifiers: - biotools:motifstack -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-motifstack diff --git a/data/motiv/bioconda_motiv.yaml b/data/motiv/bioconda_motiv.yaml index f6ae5daa0276a..35705f8a6172b 100644 --- a/data/motiv/bioconda_motiv.yaml +++ b/data/motiv/bioconda_motiv.yaml @@ -5,7 +5,6 @@ description: This package makes use of STAMP for comparing a set of motifs to a home: https://bioconductor.org/packages/3.10/bioc/html/MotIV.html identifiers: - biotools:motiv -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-motiv diff --git a/data/msmseda/bioconda_msmseda.yaml b/data/msmseda/bioconda_msmseda.yaml index bb46a577003cb..51a54376cba66 100644 --- a/data/msmseda/bioconda_msmseda.yaml +++ b/data/msmseda/bioconda_msmseda.yaml @@ -4,7 +4,6 @@ description: Exploratory data analysis to assess the quality of a set of LC-MS/M home: https://bioconductor.org/packages/3.10/bioc/html/msmsEDA.html identifiers: - biotools:msmseda -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-msmseda diff --git a/data/msnid/bioconda_msnid.yaml b/data/msnid/bioconda_msnid.yaml index b78336db6aacf..e4716620ee665 100644 --- a/data/msnid/bioconda_msnid.yaml +++ b/data/msnid/bioconda_msnid.yaml @@ -8,7 +8,6 @@ description: Extracts MS/MS ID data from mzIdentML (leveraging mzID package) or home: https://bioconductor.org/packages/3.10/bioc/html/MSnID.html identifiers: - biotools:msnid -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-msnid summary: Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics diff --git a/data/multiscan/bioconda_multiscan.yaml b/data/multiscan/bioconda_multiscan.yaml index ff346b658eb9f..f48f5f767e87f 100644 --- a/data/multiscan/bioconda_multiscan.yaml +++ b/data/multiscan/bioconda_multiscan.yaml @@ -3,7 +3,6 @@ description: Estimates gene expressions from several laser scans of the same mic home: https://bioconductor.org/packages/3.10/bioc/html/multiscan.html identifiers: - biotools:multiscan -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-multiscan diff --git a/data/mvcclass/bioconda_mvcclass.yaml b/data/mvcclass/bioconda_mvcclass.yaml index 0077632fb1fcb..be71dbde69d92 100644 --- a/data/mvcclass/bioconda_mvcclass.yaml +++ b/data/mvcclass/bioconda_mvcclass.yaml @@ -3,7 +3,6 @@ description: Creates classes used in model-view-controller (MVC) design home: https://bioconductor.org/packages/3.10/bioc/html/MVCClass.html identifiers: - biotools:mvcclass -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-mvcclass diff --git a/data/mzid/bioconda_mzid.yaml b/data/mzid/bioconda_mzid.yaml index ceafd7ec57f85..230e9e3f75638 100644 --- a/data/mzid/bioconda_mzid.yaml +++ b/data/mzid/bioconda_mzid.yaml @@ -7,7 +7,6 @@ description: A parser for mzIdentML files implemented using the XML package. The home: https://bioconductor.org/packages/3.10/bioc/html/mzID.html identifiers: - biotools:mzid -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-mzid diff --git a/data/ncigraph/bioconda_ncigraph.yaml b/data/ncigraph/bioconda_ncigraph.yaml index 54bcb8fa35535..79cd7a7985b2b 100644 --- a/data/ncigraph/bioconda_ncigraph.yaml +++ b/data/ncigraph/bioconda_ncigraph.yaml @@ -4,7 +4,6 @@ description: Provides various methods to load the pathways from the NCI Pathways home: https://bioconductor.org/packages/3.10/bioc/html/NCIgraph.html identifiers: - biotools:ncigraph -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-ncigraph diff --git a/data/oligoclasses/bioconda_oligoclasses.yaml b/data/oligoclasses/bioconda_oligoclasses.yaml index a797f95fb83d3..d56a35ccb5987 100644 --- a/data/oligoclasses/bioconda_oligoclasses.yaml +++ b/data/oligoclasses/bioconda_oligoclasses.yaml @@ -4,7 +4,6 @@ description: This package contains class definitions, validity checks, and initi home: https://bioconductor.org/packages/3.10/bioc/html/oligoClasses.html identifiers: - biotools:oligoclasses -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-oligoclasses diff --git a/data/organismdbi/bioconda_organismdbi.yaml b/data/organismdbi/bioconda_organismdbi.yaml index 8e14f90c8534e..0e10ac3a90f4e 100644 --- a/data/organismdbi/bioconda_organismdbi.yaml +++ b/data/organismdbi/bioconda_organismdbi.yaml @@ -5,7 +5,6 @@ description: The package enables a simple unified interface to several annotatio home: https://bioconductor.org/packages/3.10/bioc/html/OrganismDbi.html identifiers: - biotools:organismdbi -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-organismdbi summary: Software to enable the smooth interfacing of different database packages diff --git a/data/paircompviz/bioconda_paircompviz.yaml b/data/paircompviz/bioconda_paircompviz.yaml index f7f1532878c51..c27d1cb9d352d 100644 --- a/data/paircompviz/bioconda_paircompviz.yaml +++ b/data/paircompviz/bioconda_paircompviz.yaml @@ -8,7 +8,6 @@ description: This package provides visualization of the results from the multipl home: https://bioconductor.org/packages/3.10/bioc/html/paircompviz.html identifiers: - biotools:paircompviz -- doi:10.1038/nmeth.3252 license: GPL (>=3.0) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-paircompviz diff --git a/data/parody/bioconda_parody.yaml b/data/parody/bioconda_parody.yaml index c892df3814730..14f9415375736 100644 --- a/data/parody/bioconda_parody.yaml +++ b/data/parody/bioconda_parody.yaml @@ -4,7 +4,6 @@ description: routines for univariate and multivariate outlier detection with a f home: https://bioconductor.org/packages/3.10/bioc/html/parody.html identifiers: - biotools:parody -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-parody summary: Parametric And Resistant Outlier DYtection diff --git a/data/pathostat/bioconda_pathostat.yaml b/data/pathostat/bioconda_pathostat.yaml index 948c736128a78..82592d0011cab 100644 --- a/data/pathostat/bioconda_pathostat.yaml +++ b/data/pathostat/bioconda_pathostat.yaml @@ -7,7 +7,6 @@ description: The purpose of this package is to perform Statistical Microbiome An home: https://bioconductor.org/packages/3.10/bioc/html/PathoStat.html identifiers: - biotools:pathostat -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-pathostat diff --git a/data/pathrender/bioconda_pathrender.yaml b/data/pathrender/bioconda_pathrender.yaml index 409d495392978..4d9b1d5a8cfc2 100644 --- a/data/pathrender/bioconda_pathrender.yaml +++ b/data/pathrender/bioconda_pathrender.yaml @@ -3,7 +3,6 @@ description: build graphs from pathway databases, render them by Rgraphviz. home: https://bioconductor.org/packages/3.10/bioc/html/pathRender.html identifiers: - biotools:pathrender -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-pathrender diff --git a/data/pcot2/bioconda_pcot2.yaml b/data/pcot2/bioconda_pcot2.yaml index 8db4e0ee44c74..03b0e4bc78208 100644 --- a/data/pcot2/bioconda_pcot2.yaml +++ b/data/pcot2/bioconda_pcot2.yaml @@ -6,7 +6,6 @@ description: PCOT2 is a permutation-based method for investigating changes in th home: https://bioconductor.org/packages/3.10/bioc/html/pcot2.html identifiers: - biotools:pcot2 -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-pcot2 diff --git a/data/pcpheno/bioconda_pcpheno.yaml b/data/pcpheno/bioconda_pcpheno.yaml index 40d1ff37f9924..b0900f887616e 100644 --- a/data/pcpheno/bioconda_pcpheno.yaml +++ b/data/pcpheno/bioconda_pcpheno.yaml @@ -4,7 +4,6 @@ description: Tools to integrate, annotate, and link phenotypes to cellular organ home: https://bioconductor.org/packages/3.10/bioc/html/PCpheno.html identifiers: - biotools:pcpheno -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-pcpheno summary: Phenotypes and cellular organizational units diff --git a/data/pepxmltab/bioconda_pepxmltab.yaml b/data/pepxmltab/bioconda_pepxmltab.yaml index f4f5a2c39dcd3..46d9602575e16 100644 --- a/data/pepxmltab/bioconda_pepxmltab.yaml +++ b/data/pepxmltab/bioconda_pepxmltab.yaml @@ -5,7 +5,6 @@ description: Parsing pepXML files based one XML package. The package tries to ha home: https://bioconductor.org/packages/3.10/bioc/html/pepXMLTab.html identifiers: - biotools:pepxmltab -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-pepxmltab summary: Parsing pepXML files and filter based on peptide FDR. diff --git a/data/pgsea/bioconda_pgsea.yaml b/data/pgsea/bioconda_pgsea.yaml index 4884a0fd07c4f..28ef6371374a9 100644 --- a/data/pgsea/bioconda_pgsea.yaml +++ b/data/pgsea/bioconda_pgsea.yaml @@ -3,7 +3,6 @@ description: Parametric Analysis of Gene Set Enrichment home: https://bioconductor.org/packages/3.10/bioc/html/PGSEA.html identifiers: - biotools:pgsea -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-pgsea diff --git a/data/pint/bioconda_pint.yaml b/data/pint/bioconda_pint.yaml index cd47f156c832a..97a21c98e5134 100644 --- a/data/pint/bioconda_pint.yaml +++ b/data/pint/bioconda_pint.yaml @@ -4,7 +4,6 @@ description: Pairwise data integration for functional genomics, including tools home: https://bioconductor.org/packages/3.10/bioc/html/pint.html identifiers: - biotools:pint -- doi:10.1038/nmeth.3252 license: BSD_2_clause + file LICENSE license_file: LICENSE name: bioconductor-pint diff --git a/data/pkgdeptools/bioconda_pkgdeptools.yaml b/data/pkgdeptools/bioconda_pkgdeptools.yaml index fed17016c183f..9d2f900e65fd5 100644 --- a/data/pkgdeptools/bioconda_pkgdeptools.yaml +++ b/data/pkgdeptools/bioconda_pkgdeptools.yaml @@ -8,7 +8,6 @@ description: This package provides tools for computing and analyzing dependency home: https://bioconductor.org/packages/3.10/bioc/html/pkgDepTools.html identifiers: - biotools:pkgdeptools -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-pkgdeptools diff --git a/data/plier/bioconda_plier.yaml b/data/plier/bioconda_plier.yaml index 5f595082f68a7..0b5db5fb3cc41 100644 --- a/data/plier/bioconda_plier.yaml +++ b/data/plier/bioconda_plier.yaml @@ -5,7 +5,6 @@ description: The PLIER (Probe Logarithmic Error Intensity Estimate) method produ home: https://bioconductor.org/packages/3.10/bioc/html/plier.html identifiers: - biotools:plier -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-plier diff --git a/data/plpe/bioconda_plpe.yaml b/data/plpe/bioconda_plpe.yaml index b264bc78a90d2..e82cbb41b7645 100644 --- a/data/plpe/bioconda_plpe.yaml +++ b/data/plpe/bioconda_plpe.yaml @@ -3,7 +3,6 @@ description: This package performs tests for paired high-throughput data. home: https://bioconductor.org/packages/3.10/bioc/html/PLPE.html identifiers: - biotools:plpe -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-plpe diff --git a/data/podkat/bioconda_podkat.yaml b/data/podkat/bioconda_podkat.yaml index 9d987a6b32464..084e2b8ccd364 100644 --- a/data/podkat/bioconda_podkat.yaml +++ b/data/podkat/bioconda_podkat.yaml @@ -9,7 +9,6 @@ description: This package provides an association test that is capable of dealin home: https://bioconductor.org/packages/3.10/bioc/html/podkat.html identifiers: - biotools:podkat -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-podkat diff --git a/data/prada/bioconda_prada.yaml b/data/prada/bioconda_prada.yaml index ff37d3e50219b..31e0a3a71b3b2 100644 --- a/data/prada/bioconda_prada.yaml +++ b/data/prada/bioconda_prada.yaml @@ -5,7 +5,6 @@ description: Tools for analysing and navigating data from high-throughput phenot home: https://bioconductor.org/packages/3.10/bioc/html/prada.html identifiers: - biotools:prada -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-prada diff --git a/data/preprocesscore/bioconda_preprocesscore.yaml b/data/preprocesscore/bioconda_preprocesscore.yaml index 333f73a81c5f6..a2ccb88922d8c 100644 --- a/data/preprocesscore/bioconda_preprocesscore.yaml +++ b/data/preprocesscore/bioconda_preprocesscore.yaml @@ -3,7 +3,6 @@ description: A library of core preprocessing routines. home: https://bioconductor.org/packages/3.10/bioc/html/preprocessCore.html identifiers: - biotools:preprocesscore -- doi:10.1038/nmeth.3252 license: LGPL (>= 2) license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-preprocesscore diff --git a/data/prize/bioconda_prize.yaml b/data/prize/bioconda_prize.yaml index 0cf6e892ea113..86320614fb58e 100644 --- a/data/prize/bioconda_prize.yaml +++ b/data/prize/bioconda_prize.yaml @@ -11,7 +11,6 @@ description: The high throughput studies often produce large amounts of numerous home: https://bioconductor.org/packages/3.10/bioc/html/Prize.html identifiers: - biotools:prize -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-prize summary: 'Prize: an R package for prioritization estimation based on analytic hierarchy diff --git a/data/process/bioconda_process.yaml b/data/process/bioconda_process.yaml index c2c9d9318176d..dcc0d9c61da24 100644 --- a/data/process/bioconda_process.yaml +++ b/data/process/bioconda_process.yaml @@ -3,7 +3,6 @@ description: A package for processing protein mass spectrometry data. home: https://bioconductor.org/packages/3.10/bioc/html/PROcess.html identifiers: - biotools:process -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-process summary: Ciphergen SELDI-TOF Processing diff --git a/data/profia/bioconda_profia.yaml b/data/profia/bioconda_profia.yaml index 6286675d2ac0c..8fea6de21eeb4 100644 --- a/data/profia/bioconda_profia.yaml +++ b/data/profia/bioconda_profia.yaml @@ -12,7 +12,6 @@ description: Flow Injection Analysis coupled to High-Resolution Mass Spectrometr home: https://bioconductor.org/packages/3.10/bioc/html/proFIA.html identifiers: - biotools:profia -- doi:10.1038/nmeth.3252 license: CeCILL name: bioconductor-profia summary: Preprocessing of FIA-HRMS data diff --git a/data/proteomicsannotationhubdata/bioconda_proteomicsannotationhubdata.yaml b/data/proteomicsannotationhubdata/bioconda_proteomicsannotationhubdata.yaml index 1bd9971c22ee1..7eebe2cc5ece0 100644 --- a/data/proteomicsannotationhubdata/bioconda_proteomicsannotationhubdata.yaml +++ b/data/proteomicsannotationhubdata/bioconda_proteomicsannotationhubdata.yaml @@ -4,7 +4,6 @@ description: These recipes convert a variety and a growing number of public prot home: https://bioconductor.org/packages/3.10/bioc/html/ProteomicsAnnotationHubData.html identifiers: - biotools:proteomicsannotationhubdata -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-proteomicsannotationhubdata summary: Transform public proteomics data resources into Bioconductor Data Structures diff --git a/data/protgenerics/bioconda_protgenerics.yaml b/data/protgenerics/bioconda_protgenerics.yaml index 515a06e241ee3..75927f781e35a 100644 --- a/data/protgenerics/bioconda_protgenerics.yaml +++ b/data/protgenerics/bioconda_protgenerics.yaml @@ -3,7 +3,6 @@ description: S4 generic functions needed by Bioconductor proteomics packages. home: https://bioconductor.org/packages/3.10/bioc/html/ProtGenerics.html identifiers: - biotools:protgenerics -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-protgenerics summary: S4 generic functions for Bioconductor proteomics infrastructure diff --git a/data/psicquic/bioconda_psicquic.yaml b/data/psicquic/bioconda_psicquic.yaml index 8c5e11a1edd58..5c4d2112a2c10 100644 --- a/data/psicquic/bioconda_psicquic.yaml +++ b/data/psicquic/bioconda_psicquic.yaml @@ -4,7 +4,6 @@ description: PSICQUIC is a project within the HUPO Proteomics Standard Initiativ home: https://bioconductor.org/packages/3.10/bioc/html/PSICQUIC.html identifiers: - biotools:psicquic -- doi:10.1038/nmeth.3252 license: Apache License 2.0 name: bioconductor-psicquic summary: Proteomics Standard Initiative Common QUery InterfaCe diff --git a/data/pwmenrich/bioconda_pwmenrich.yaml b/data/pwmenrich/bioconda_pwmenrich.yaml index 3d323788407ae..a2b7d53df2373 100644 --- a/data/pwmenrich/bioconda_pwmenrich.yaml +++ b/data/pwmenrich/bioconda_pwmenrich.yaml @@ -8,7 +8,6 @@ description: A toolkit of high-level functions for DNA motif scanning and enrich home: https://bioconductor.org/packages/3.10/bioc/html/PWMEnrich.html identifiers: - biotools:pwmenrich -- doi:10.1038/nmeth.3252 license: LGPL (>= 2) license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-pwmenrich diff --git a/data/qcmetrics/bioconda_qcmetrics.yaml b/data/qcmetrics/bioconda_qcmetrics.yaml index 444c2165c3711..9ec61baca262f 100644 --- a/data/qcmetrics/bioconda_qcmetrics.yaml +++ b/data/qcmetrics/bioconda_qcmetrics.yaml @@ -5,7 +5,6 @@ description: The package provides a framework for generic quality control of dat home: https://bioconductor.org/packages/3.10/bioc/html/qcmetrics.html identifiers: - biotools:qcmetrics -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-qcmetrics diff --git a/data/qrqc/bioconda_qrqc.yaml b/data/qrqc/bioconda_qrqc.yaml index 153da8cc51fd8..cab91f24cd816 100644 --- a/data/qrqc/bioconda_qrqc.yaml +++ b/data/qrqc/bioconda_qrqc.yaml @@ -7,7 +7,6 @@ description: Quickly scans reads and gathers statistics on base and quality freq home: https://bioconductor.org/packages/3.10/bioc/html/qrqc.html identifiers: - biotools:qrqc -- doi:10.1038/nmeth.3252 license: GPL (>=2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-qrqc diff --git a/data/quantsmooth/bioconda_quantsmooth.yaml b/data/quantsmooth/bioconda_quantsmooth.yaml index b110a354dd53c..64486efc0e899 100644 --- a/data/quantsmooth/bioconda_quantsmooth.yaml +++ b/data/quantsmooth/bioconda_quantsmooth.yaml @@ -4,7 +4,6 @@ description: 'Implements quantile smoothing as introduced in: Quantile smoothing home: https://bioconductor.org/packages/3.10/bioc/html/quantsmooth.html identifiers: - biotools:quantsmooth -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-quantsmooth diff --git a/data/randpack/bioconda_randpack.yaml b/data/randpack/bioconda_randpack.yaml index c75a31ac67905..9b1ff6cd894fd 100644 --- a/data/randpack/bioconda_randpack.yaml +++ b/data/randpack/bioconda_randpack.yaml @@ -4,7 +4,6 @@ description: A suite of classes and functions for randomizing patients in clinic home: https://bioconductor.org/packages/3.10/bioc/html/randPack.html identifiers: - biotools:randpack -- doi:10.1038/nmeth.3252 license: Artistic 2.0 name: bioconductor-randpack summary: Randomization routines for Clinical Trials diff --git a/data/rariant/bioconda_rariant.yaml b/data/rariant/bioconda_rariant.yaml index fb88b8902a294..f83583d2fb9c3 100644 --- a/data/rariant/bioconda_rariant.yaml +++ b/data/rariant/bioconda_rariant.yaml @@ -5,7 +5,6 @@ description: The 'Rariant' package identifies single nucleotide variants from se home: https://bioconductor.org/packages/3.10/bioc/html/Rariant.html identifiers: - biotools:rariant -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-rariant diff --git a/data/rbcbook1/bioconda_rbcbook1.yaml b/data/rbcbook1/bioconda_rbcbook1.yaml index 2d309956069cd..77154c0550ed5 100644 --- a/data/rbcbook1/bioconda_rbcbook1.yaml +++ b/data/rbcbook1/bioconda_rbcbook1.yaml @@ -3,7 +3,6 @@ description: tools for building book home: https://bioconductor.org/packages/3.10/bioc/html/RbcBook1.html identifiers: - biotools:rbcbook1 -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-rbcbook1 summary: Support for Springer monograph on Bioconductor diff --git a/data/rbioinf/bioconda_rbioinf.yaml b/data/rbioinf/bioconda_rbioinf.yaml index bc5824a9dd528..8490753ce1aa1 100644 --- a/data/rbioinf/bioconda_rbioinf.yaml +++ b/data/rbioinf/bioconda_rbioinf.yaml @@ -4,7 +4,6 @@ description: Functions and datasets and examples to accompany the monograph R Fo home: https://bioconductor.org/packages/3.10/bioc/html/RBioinf.html identifiers: - biotools:rbioinf -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-rbioinf summary: RBioinf diff --git a/data/rbm/bioconda_rbm.yaml b/data/rbm/bioconda_rbm.yaml index fecf9bc15201b..63f77fed6db9a 100644 --- a/data/rbm/bioconda_rbm.yaml +++ b/data/rbm/bioconda_rbm.yaml @@ -4,7 +4,6 @@ description: Use A Resampling-Based Empirical Bayes Approach to Assess Different home: https://bioconductor.org/packages/3.10/bioc/html/RBM.html identifiers: - biotools:rbm -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-rbm diff --git a/data/rbowtie/bioconda_rbowtie.yaml b/data/rbowtie/bioconda_rbowtie.yaml index d03afd11b7eff..c618fc32e33cf 100644 --- a/data/rbowtie/bioconda_rbowtie.yaml +++ b/data/rbowtie/bioconda_rbowtie.yaml @@ -6,7 +6,6 @@ description: This package provides an R wrapper around the popular bowtie short home: https://bioconductor.org/packages/3.10/bioc/html/Rbowtie.html identifiers: - biotools:rbowtie -- doi:10.1038/nmeth.3252 license: Artistic-2.0 | file LICENSE license_file: LICENSE name: bioconductor-rbowtie diff --git a/data/rcaspar/bioconda_rcaspar.yaml b/data/rcaspar/bioconda_rcaspar.yaml index 0333b30198555..dde9adafb1525 100644 --- a/data/rcaspar/bioconda_rcaspar.yaml +++ b/data/rcaspar/bioconda_rcaspar.yaml @@ -10,7 +10,6 @@ description: 'The package is the R-version of the C-based software \bold{CASPAR} home: https://bioconductor.org/packages/3.10/bioc/html/RCASPAR.html identifiers: - biotools:rcaspar -- doi:10.1038/nmeth.3252 license: GPL (>=3) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-rcaspar diff --git a/data/recoup/bioconda_recoup.yaml b/data/recoup/bioconda_recoup.yaml index ebef088f22b87..71aca8cbd3772 100644 --- a/data/recoup/bioconda_recoup.yaml +++ b/data/recoup/bioconda_recoup.yaml @@ -8,7 +8,6 @@ description: recoup calculates and plots signal profiles created from short sequ home: https://bioconductor.org/packages/3.10/bioc/html/recoup.html identifiers: - biotools:recoup -- doi:10.1038/nmeth.3252 license: GPL (>= 3) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-recoup diff --git a/data/refnet/bioconda_refnet.yaml b/data/refnet/bioconda_refnet.yaml index 07bd2ff1454f9..8f7fc17b552d5 100644 --- a/data/refnet/bioconda_refnet.yaml +++ b/data/refnet/bioconda_refnet.yaml @@ -4,7 +4,6 @@ description: Obtain molecular interactions with metadata, some archived, some dy home: https://bioconductor.org/packages/3.10/bioc/html/RefNet.html identifiers: - biotools:refnet -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-refnet summary: A queryable collection of molecular interactions, from many sources diff --git a/data/regsplice/bioconda_regsplice.yaml b/data/regsplice/bioconda_regsplice.yaml index bf08c7af5f221..7e3f9c4cd3980 100644 --- a/data/regsplice/bioconda_regsplice.yaml +++ b/data/regsplice/bioconda_regsplice.yaml @@ -5,7 +5,6 @@ description: Statistical methods for detection of differential splicing (differe home: https://bioconductor.org/packages/3.10/bioc/html/regsplice.html identifiers: - biotools:regsplice -- doi:10.1038/nmeth.3252 license: MIT + file LICENSE license_file: LICENSE name: bioconductor-regsplice diff --git a/data/rgalaxy/bioconda_rgalaxy.yaml b/data/rgalaxy/bioconda_rgalaxy.yaml index df45c951d70a6..eab0512a3a7a5 100644 --- a/data/rgalaxy/bioconda_rgalaxy.yaml +++ b/data/rgalaxy/bioconda_rgalaxy.yaml @@ -4,7 +4,6 @@ description: Given an R function and its manual page, make the documented functi home: https://bioconductor.org/packages/3.10/bioc/html/RGalaxy.html identifiers: - biotools:rgalaxy -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-rgalaxy summary: Make an R function available in the Galaxy web platform diff --git a/data/rgraph2js/bioconda_rgraph2js.yaml b/data/rgraph2js/bioconda_rgraph2js.yaml index a5ed022c3077d..f20f5a80fae84 100644 --- a/data/rgraph2js/bioconda_rgraph2js.yaml +++ b/data/rgraph2js/bioconda_rgraph2js.yaml @@ -4,7 +4,6 @@ description: Generator of web pages which display interactive network/graph visu home: https://bioconductor.org/packages/3.10/bioc/html/RGraph2js.html identifiers: - biotools:rgraph2js -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-rgraph2js diff --git a/data/rgreat/bioconda_rgreat.yaml b/data/rgreat/bioconda_rgreat.yaml index 6ed0f80fa294e..a8047113ef28e 100644 --- a/data/rgreat/bioconda_rgreat.yaml +++ b/data/rgreat/bioconda_rgreat.yaml @@ -5,7 +5,6 @@ description: This package makes GREAT (Genomic Regions Enrichment of Annotations home: https://bioconductor.org/packages/3.10/bioc/html/rGREAT.html identifiers: - biotools:rgreat -- doi:10.1038/nmeth.3252 license: MIT + file LICENSE license_file: LICENSE name: bioconductor-rgreat diff --git a/data/rgsea/bioconda_rgsea.yaml b/data/rgsea/bioconda_rgsea.yaml index 8309e32e491a4..c67e0d178e53b 100644 --- a/data/rgsea/bioconda_rgsea.yaml +++ b/data/rgsea/bioconda_rgsea.yaml @@ -5,7 +5,6 @@ description: Combining bootstrap aggregating and Gene set enrichment analysis (G home: https://bioconductor.org/packages/3.10/bioc/html/RGSEA.html identifiers: - biotools:rgsea -- doi:10.1038/nmeth.3252 license: GPL(>=3) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-rgsea diff --git a/data/rgsepd/bioconda_rgsepd.yaml b/data/rgsepd/bioconda_rgsepd.yaml index 650219cefe4a7..84642eb82aa23 100644 --- a/data/rgsepd/bioconda_rgsepd.yaml +++ b/data/rgsepd/bioconda_rgsepd.yaml @@ -6,7 +6,6 @@ description: R/GSEPD is a bioinformatics package for R to help disambiguate tran home: https://bioconductor.org/packages/3.10/bioc/html/rgsepd.html identifiers: - biotools:rgsepd -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-rgsepd diff --git a/data/rhtslib/bioconda_rhtslib.yaml b/data/rhtslib/bioconda_rhtslib.yaml index 3f3ed88d91844..34bbbe05bd780 100644 --- a/data/rhtslib/bioconda_rhtslib.yaml +++ b/data/rhtslib/bioconda_rhtslib.yaml @@ -6,7 +6,6 @@ description: This package provides version 1.7 of the 'HTSlib' C library for hig home: https://bioconductor.org/packages/3.10/bioc/html/Rhtslib.html identifiers: - biotools:rhtslib -- doi:10.1038/nmeth.3252 license: LGPL (>= 2) license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-rhtslib diff --git a/data/rmir/bioconda_rmir.yaml b/data/rmir/bioconda_rmir.yaml index 9d048609608ca..82a8a64c5c5a2 100644 --- a/data/rmir/bioconda_rmir.yaml +++ b/data/rmir/bioconda_rmir.yaml @@ -4,7 +4,6 @@ description: Useful functions to merge microRNA and respective targets using dif home: https://bioconductor.org/packages/3.10/bioc/html/RmiR.html identifiers: - biotools:rmir -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-rmir summary: Package to work with miRNAs and miRNA targets with R diff --git a/data/rnits/bioconda_rnits.yaml b/data/rnits/bioconda_rnits.yaml index c491aab9a91df..9c376fe82ca52 100644 --- a/data/rnits/bioconda_rnits.yaml +++ b/data/rnits/bioconda_rnits.yaml @@ -4,7 +4,6 @@ description: R/Bioconductor package for normalization, curve registration and in home: https://bioconductor.org/packages/3.10/bioc/html/Rnits.html identifiers: - biotools:rnits -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-rnits diff --git a/data/roar/bioconda_roar.yaml b/data/roar/bioconda_roar.yaml index 1f1c48c472193..59c9c8d5c29d1 100644 --- a/data/roar/bioconda_roar.yaml +++ b/data/roar/bioconda_roar.yaml @@ -5,7 +5,6 @@ description: Identify preferential usage of APA sites, comparing two biological home: https://bioconductor.org/packages/3.10/bioc/html/roar.html identifiers: - biotools:roar -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-roar diff --git a/data/roc/bioconda_roc.yaml b/data/roc/bioconda_roc.yaml index 9f14685d37d66..04e668e750d4c 100644 --- a/data/roc/bioconda_roc.yaml +++ b/data/roc/bioconda_roc.yaml @@ -3,7 +3,6 @@ description: Provide utilities for ROC, with microarray focus. home: https://bioconductor.org/packages/3.10/bioc/html/ROC.html identifiers: - biotools:roc -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-roc summary: utilities for ROC, with microarray focus diff --git a/data/rols/bioconda_rols.yaml b/data/rols/bioconda_rols.yaml index f4a449a95b005..6541e843fa85c 100644 --- a/data/rols/bioconda_rols.yaml +++ b/data/rols/bioconda_rols.yaml @@ -4,7 +4,6 @@ description: The rols package is an interface to the Ontology Lookup Service (OL home: https://bioconductor.org/packages/3.10/bioc/html/rols.html identifiers: - biotools:rols -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-rols diff --git a/data/rrdp/bioconda_rrdp.yaml b/data/rrdp/bioconda_rrdp.yaml index 04cb8d1a838e7..256b653fcc4a2 100644 --- a/data/rrdp/bioconda_rrdp.yaml +++ b/data/rrdp/bioconda_rrdp.yaml @@ -3,7 +3,6 @@ description: Seamlessly interfaces RDP classifier (version 2.9). home: https://bioconductor.org/packages/3.10/bioc/html/rRDP.html identifiers: - biotools:rrdp -- doi:10.1038/nmeth.3252 license: GPL-2 | file LICENSE license_file: LICENSE name: bioconductor-rrdp diff --git a/data/rrho/bioconda_rrho.yaml b/data/rrho/bioconda_rrho.yaml index 1cd76fdf1de8c..3c5098c267c60 100644 --- a/data/rrho/bioconda_rrho.yaml +++ b/data/rrho/bioconda_rrho.yaml @@ -4,7 +4,6 @@ description: The package is aimed at inference on the amount of agreement in two home: https://bioconductor.org/packages/3.10/bioc/html/RRHO.html identifiers: - biotools:rrho -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-rrho diff --git a/data/rsamtools/bioconda_rsamtools.yaml b/data/rsamtools/bioconda_rsamtools.yaml index a49e39fb5007a..411c491120b17 100644 --- a/data/rsamtools/bioconda_rsamtools.yaml +++ b/data/rsamtools/bioconda_rsamtools.yaml @@ -5,7 +5,6 @@ description: This package provides an interface to the 'samtools', 'bcftools', a home: https://bioconductor.org/packages/3.10/bioc/html/Rsamtools.html identifiers: - biotools:rsamtools -- doi:10.1038/nmeth.3252 license: Artistic-2.0 | file LICENSE license_file: LICENSE name: bioconductor-rsamtools diff --git a/data/rtcga/bioconda_rtcga.yaml b/data/rtcga/bioconda_rtcga.yaml index 9f7b40c2fcb01..4f41d4a856cc5 100644 --- a/data/rtcga/bioconda_rtcga.yaml +++ b/data/rtcga/bioconda_rtcga.yaml @@ -11,7 +11,6 @@ description: The Cancer Genome Atlas (TCGA) Data Portal provides a platform for home: https://bioconductor.org/packages/3.10/bioc/html/RTCGA.html identifiers: - biotools:rtcga -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-rtcga diff --git a/data/rtrmui/bioconda_rtrmui.yaml b/data/rtrmui/bioconda_rtrmui.yaml index e0a4b19cb5d56..9c3a20987b614 100644 --- a/data/rtrmui/bioconda_rtrmui.yaml +++ b/data/rtrmui/bioconda_rtrmui.yaml @@ -4,7 +4,6 @@ description: This package provides a web interface to compute transcriptional re home: https://bioconductor.org/packages/3.10/bioc/html/rTRMui.html identifiers: - biotools:rtrmui -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-rtrmui diff --git a/data/s4vectors/bioconda_s4vectors.yaml b/data/s4vectors/bioconda_s4vectors.yaml index 0e9d9d5ceb3cb..2f16d72645396 100644 --- a/data/s4vectors/bioconda_s4vectors.yaml +++ b/data/s4vectors/bioconda_s4vectors.yaml @@ -9,7 +9,6 @@ description: The S4Vectors package defines the Vector and List virtual classes a home: https://bioconductor.org/packages/3.10/bioc/html/S4Vectors.html identifiers: - biotools:s4vectors -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-s4vectors summary: Foundation of vector-like and list-like containers in Bioconductor diff --git a/data/sagenhaft/bioconda_sagenhaft.yaml b/data/sagenhaft/bioconda_sagenhaft.yaml index c6d33afea8e77..4045acc69307e 100644 --- a/data/sagenhaft/bioconda_sagenhaft.yaml +++ b/data/sagenhaft/bioconda_sagenhaft.yaml @@ -7,7 +7,6 @@ description: This package implements several functions useful for analysis of ge home: https://bioconductor.org/packages/3.10/bioc/html/sagenhaft.html identifiers: - biotools:sagenhaft -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-sagenhaft diff --git a/data/sagx/bioconda_sagx.yaml b/data/sagx/bioconda_sagx.yaml index 05728146b857b..34e8c0b895977 100644 --- a/data/sagx/bioconda_sagx.yaml +++ b/data/sagx/bioconda_sagx.yaml @@ -5,7 +5,6 @@ description: A package for retrieval, preparation and analysis of data from the home: https://bioconductor.org/packages/3.10/bioc/html/SAGx.html identifiers: - biotools:sagx -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-sagx diff --git a/data/savr/bioconda_savr.yaml b/data/savr/bioconda_savr.yaml index 3a88e059bb2b7..de30c49f41ecd 100644 --- a/data/savr/bioconda_savr.yaml +++ b/data/savr/bioconda_savr.yaml @@ -4,7 +4,6 @@ description: Parse Illumina Sequence Analysis Viewer (SAV) files, access data, a home: https://bioconductor.org/packages/3.10/bioc/html/savR.html identifiers: - biotools:savr -- doi:10.1038/nmeth.3252 license: AGPL-3 license_file: /lib/R/share/licenses/AGPL-3 name: bioconductor-savr diff --git a/data/scisi/bioconda_scisi.yaml b/data/scisi/bioconda_scisi.yaml index e94dbb327d9ee..8f40ae83ffc7e 100644 --- a/data/scisi/bioconda_scisi.yaml +++ b/data/scisi/bioconda_scisi.yaml @@ -3,7 +3,6 @@ description: Package to create In Silico Interactomes home: https://bioconductor.org/packages/3.10/bioc/html/ScISI.html identifiers: - biotools:scisi -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-scisi diff --git a/data/semdist/bioconda_semdist.yaml b/data/semdist/bioconda_semdist.yaml index ff99139e514ac..0b396049c1be0 100644 --- a/data/semdist/bioconda_semdist.yaml +++ b/data/semdist/bioconda_semdist.yaml @@ -6,7 +6,6 @@ description: This package implements methods to calculate information accretion home: https://bioconductor.org/packages/3.10/bioc/html/SemDist.html identifiers: - biotools:semdist -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-semdist diff --git a/data/sepa/bioconda_sepa.yaml b/data/sepa/bioconda_sepa.yaml index 8c30c1cb1e5cd..9d47d54475c5c 100644 --- a/data/sepa/bioconda_sepa.yaml +++ b/data/sepa/bioconda_sepa.yaml @@ -2,7 +2,6 @@ biotools_id: sepa home: https://bioconductor.org/packages/3.9/bioc/html/SEPA.html identifiers: - biotools:sepa -- doi:10.1038/nmeth.3252 license: GPL(>=2) name: bioconductor-sepa summary: Given single-cell RNA-seq data and true experiment time of cells or pseudo-time diff --git a/data/seqlogo/bioconda_seqlogo.yaml b/data/seqlogo/bioconda_seqlogo.yaml index f21984e193c6e..99f2c5f8b051f 100644 --- a/data/seqlogo/bioconda_seqlogo.yaml +++ b/data/seqlogo/bioconda_seqlogo.yaml @@ -4,7 +4,6 @@ description: seqLogo takes the position weight matrix of a DNA sequence motif an home: https://bioconductor.org/packages/3.10/bioc/html/seqLogo.html identifiers: - biotools:seqlogo -- doi:10.1038/nmeth.3252 license: LGPL (>= 2) license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-seqlogo diff --git a/data/seqpattern/bioconda_seqpattern.yaml b/data/seqpattern/bioconda_seqpattern.yaml index 2f975c5b12e3b..18cfed960957e 100644 --- a/data/seqpattern/bioconda_seqpattern.yaml +++ b/data/seqpattern/bioconda_seqpattern.yaml @@ -5,7 +5,6 @@ description: Visualising oligonucleotide patterns and sequence motifs occurrence home: https://bioconductor.org/packages/3.10/bioc/html/seqPattern.html identifiers: - biotools:seqpattern -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-seqpattern diff --git a/data/seqtools/bioconda_seqtools.yaml b/data/seqtools/bioconda_seqtools.yaml index 97b736314c5da..ed91f60298439 100644 --- a/data/seqtools/bioconda_seqtools.yaml +++ b/data/seqtools/bioconda_seqtools.yaml @@ -4,7 +4,6 @@ description: Analyze read length, phred scores and alphabet frequency and DNA k- home: https://bioconductor.org/packages/3.10/bioc/html/seqTools.html identifiers: - biotools:seqtools -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-seqtools summary: Analysis of nucleotide, sequence and quality content on fastq files diff --git a/data/sigar/bioconda_sigar.yaml b/data/sigar/bioconda_sigar.yaml index d708fde122784..554f1805b0783 100644 --- a/data/sigar/bioconda_sigar.yaml +++ b/data/sigar/bioconda_sigar.yaml @@ -5,7 +5,6 @@ description: Facilitates the joint analysis of high-throughput data from multipl home: https://bioconductor.org/packages/3.10/bioc/html/sigaR.html identifiers: - biotools:sigar -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-sigar diff --git a/data/sigpathway/bioconda_sigpathway.yaml b/data/sigpathway/bioconda_sigpathway.yaml index e4a5df9afa87a..7cde1e4b925a3 100644 --- a/data/sigpathway/bioconda_sigpathway.yaml +++ b/data/sigpathway/bioconda_sigpathway.yaml @@ -4,7 +4,6 @@ description: Conducts pathway analysis by calculating the NT_k and NE_k statisti home: https://bioconductor.org/packages/3.10/bioc/html/sigPathway.html identifiers: - biotools:sigpathway -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-sigpathway diff --git a/data/simbindprofiles/bioconda_simbindprofiles.yaml b/data/simbindprofiles/bioconda_simbindprofiles.yaml index 6ac40c2030725..185f1c8314d5d 100644 --- a/data/simbindprofiles/bioconda_simbindprofiles.yaml +++ b/data/simbindprofiles/bioconda_simbindprofiles.yaml @@ -7,7 +7,6 @@ description: SimBindProfiles identifies common and unique binding regions in gen home: https://bioconductor.org/packages/3.10/bioc/html/SimBindProfiles.html identifiers: - biotools:simbindprofiles -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-simbindprofiles diff --git a/data/sizepower/bioconda_sizepower.yaml b/data/sizepower/bioconda_sizepower.yaml index 1443425b5012b..0869c3af96b62 100644 --- a/data/sizepower/bioconda_sizepower.yaml +++ b/data/sizepower/bioconda_sizepower.yaml @@ -8,7 +8,6 @@ description: This package has been prepared to assist users in computing either home: https://bioconductor.org/packages/3.10/bioc/html/sizepower.html identifiers: - biotools:sizepower -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-sizepower diff --git a/data/slqpcr/bioconda_slqpcr.yaml b/data/slqpcr/bioconda_slqpcr.yaml index d8a9b6e318642..f97c7d4deef79 100644 --- a/data/slqpcr/bioconda_slqpcr.yaml +++ b/data/slqpcr/bioconda_slqpcr.yaml @@ -4,7 +4,6 @@ description: Functions for analysis of real-time quantitative PCR data at SIRS-L home: https://bioconductor.org/packages/3.10/bioc/html/SLqPCR.html identifiers: - biotools:slqpcr -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-slqpcr diff --git a/data/snpstats/bioconda_snpstats.yaml b/data/snpstats/bioconda_snpstats.yaml index 7d86241674da8..53d1c8a92180a 100644 --- a/data/snpstats/bioconda_snpstats.yaml +++ b/data/snpstats/bioconda_snpstats.yaml @@ -4,7 +4,6 @@ description: Classes and statistical methods for large SNP association studies. home: https://bioconductor.org/packages/3.10/bioc/html/snpStats.html identifiers: - biotools:snpstats -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-snpstats diff --git a/data/soggi/bioconda_soggi.yaml b/data/soggi/bioconda_soggi.yaml index 547b3ef3e9c8f..85b39e4908d77 100644 --- a/data/soggi/bioconda_soggi.yaml +++ b/data/soggi/bioconda_soggi.yaml @@ -11,7 +11,6 @@ description: The soGGi package provides a toolset to create genomic interval agg home: https://bioconductor.org/packages/3.10/bioc/html/soGGi.html identifiers: - biotools:soggi -- doi:10.1038/nmeth.3252 license: GPL (>= 3) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-soggi diff --git a/data/spikeli/bioconda_spikeli.yaml b/data/spikeli/bioconda_spikeli.yaml index d17c694e98377..f0037c8f9096a 100644 --- a/data/spikeli/bioconda_spikeli.yaml +++ b/data/spikeli/bioconda_spikeli.yaml @@ -9,7 +9,6 @@ description: SpikeLI is a package that performs the analysis of the Affymetrix s home: https://bioconductor.org/packages/3.10/bioc/html/spikeLI.html identifiers: - biotools:spikeli -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-spikeli diff --git a/data/splicegear/bioconda_splicegear.yaml b/data/splicegear/bioconda_splicegear.yaml index bed53ca0ab719..2a13c8ccea49e 100644 --- a/data/splicegear/bioconda_splicegear.yaml +++ b/data/splicegear/bioconda_splicegear.yaml @@ -3,7 +3,6 @@ description: A set of tools to work with alternative splicing home: https://bioconductor.org/packages/3.10/bioc/html/splicegear.html identifiers: - biotools:splicegear -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-splicegear diff --git a/data/splinter/bioconda_splinter.yaml b/data/splinter/bioconda_splinter.yaml index 2674152247232..4298ae6195c17 100644 --- a/data/splinter/bioconda_splinter.yaml +++ b/data/splinter/bioconda_splinter.yaml @@ -5,7 +5,6 @@ description: Provides tools to analyze alternative splicing sites, interpret out home: https://bioconductor.org/packages/3.10/bioc/html/SPLINTER.html identifiers: - biotools:splinter -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-splinter diff --git a/data/splots/bioconda_splots.yaml b/data/splots/bioconda_splots.yaml index 95dd44869ead2..21866965dad99 100644 --- a/data/splots/bioconda_splots.yaml +++ b/data/splots/bioconda_splots.yaml @@ -4,7 +4,6 @@ description: The splots package provides the plotScreen function for visualising home: https://bioconductor.org/packages/3.10/bioc/html/splots.html identifiers: - biotools:splots -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-splots diff --git a/data/squadd/bioconda_squadd.yaml b/data/squadd/bioconda_squadd.yaml index 7d9ee059dd244..403638cdd8010 100644 --- a/data/squadd/bioconda_squadd.yaml +++ b/data/squadd/bioconda_squadd.yaml @@ -4,7 +4,6 @@ description: This package SQUADD is a SQUAD add-on. It permits to generate SQUAD home: https://bioconductor.org/packages/3.10/bioc/html/SQUADD.html identifiers: - biotools:squadd -- doi:10.1038/nmeth.3252 license: GPL (>=2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-squadd diff --git a/data/sscu/bioconda_sscu.yaml b/data/sscu/bioconda_sscu.yaml index 65062dbc91853..13fa80fa2c462 100644 --- a/data/sscu/bioconda_sscu.yaml +++ b/data/sscu/bioconda_sscu.yaml @@ -20,7 +20,6 @@ description: The package calculates the indexes for selective stength in codon u home: https://bioconductor.org/packages/3.10/bioc/html/sscu.html identifiers: - biotools:sscu -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-sscu diff --git a/data/ssize/bioconda_ssize.yaml b/data/ssize/bioconda_ssize.yaml index c335d17a1d3e6..6f7535b27678f 100644 --- a/data/ssize/bioconda_ssize.yaml +++ b/data/ssize/bioconda_ssize.yaml @@ -4,7 +4,6 @@ description: Functions for computing and displaying sample size information for home: https://bioconductor.org/packages/3.10/bioc/html/ssize.html identifiers: - biotools:ssize -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-ssize diff --git a/data/ssviz/bioconda_ssviz.yaml b/data/ssviz/bioconda_ssviz.yaml index 6064ce615f664..8e85f19a69b53 100644 --- a/data/ssviz/bioconda_ssviz.yaml +++ b/data/ssviz/bioconda_ssviz.yaml @@ -3,7 +3,6 @@ description: Small RNA sequencing viewer home: https://bioconductor.org/packages/3.10/bioc/html/ssviz.html identifiers: - biotools:ssviz -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-ssviz diff --git a/data/streamer/bioconda_streamer.yaml b/data/streamer/bioconda_streamer.yaml index e63efe1055e0d..876ae08e052a2 100644 --- a/data/streamer/bioconda_streamer.yaml +++ b/data/streamer/bioconda_streamer.yaml @@ -8,7 +8,6 @@ description: Large data files can be difficult to work with in R, where data gen home: https://bioconductor.org/packages/3.10/bioc/html/Streamer.html identifiers: - biotools:streamer -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-streamer summary: Enabling stream processing of large files diff --git a/data/summarizedexperiment/bioconda_summarizedexperiment.yaml b/data/summarizedexperiment/bioconda_summarizedexperiment.yaml index 5626946b8cd4f..17d9db08efdcc 100644 --- a/data/summarizedexperiment/bioconda_summarizedexperiment.yaml +++ b/data/summarizedexperiment/bioconda_summarizedexperiment.yaml @@ -5,7 +5,6 @@ description: The SummarizedExperiment container contains one or more assays, eac home: https://bioconductor.org/packages/3.10/bioc/html/SummarizedExperiment.html identifiers: - biotools:summarizedexperiment -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-summarizedexperiment summary: SummarizedExperiment container diff --git a/data/timecourse/bioconda_timecourse.yaml b/data/timecourse/bioconda_timecourse.yaml index c2e607b271642..16252ad1f18cb 100644 --- a/data/timecourse/bioconda_timecourse.yaml +++ b/data/timecourse/bioconda_timecourse.yaml @@ -4,7 +4,6 @@ description: Functions for data analysis and graphical displays for developmenta home: https://bioconductor.org/packages/3.10/bioc/html/timecourse.html identifiers: - biotools:timecourse -- doi:10.1038/nmeth.3252 license: LGPL license_file: /lib/R/share/licenses/LGPL-3 name: bioconductor-timecourse diff --git a/data/tracktables/bioconda_tracktables.yaml b/data/tracktables/bioconda_tracktables.yaml index fe776c312fd58..9e405653ab726 100644 --- a/data/tracktables/bioconda_tracktables.yaml +++ b/data/tracktables/bioconda_tracktables.yaml @@ -4,7 +4,6 @@ description: Methods to create complex IGV genome browser sessions and dynamic I home: https://bioconductor.org/packages/3.10/bioc/html/tracktables.html identifiers: - biotools:tracktables -- doi:10.1038/nmeth.3252 license: GPL (>= 3) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-tracktables diff --git a/data/trackviewer/bioconda_trackviewer.yaml b/data/trackviewer/bioconda_trackviewer.yaml index e277307b9c586..4e36d8f3d0c7c 100644 --- a/data/trackviewer/bioconda_trackviewer.yaml +++ b/data/trackviewer/bioconda_trackviewer.yaml @@ -4,7 +4,6 @@ description: Visualize mapped reads along with annotation as track layers for NG home: https://bioconductor.org/packages/3.10/bioc/html/trackViewer.html identifiers: - biotools:trackviewer -- doi:10.1038/nmeth.3252 license: GPL (>= 2) license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-trackviewer diff --git a/data/transcriptr/bioconda_transcriptr.yaml b/data/transcriptr/bioconda_transcriptr.yaml index 53271ad97026c..93c8de7d57848 100644 --- a/data/transcriptr/bioconda_transcriptr.yaml +++ b/data/transcriptr/bioconda_transcriptr.yaml @@ -19,7 +19,6 @@ description: The differences in the RNA types being sequenced have an impact on home: https://bioconductor.org/packages/3.10/bioc/html/transcriptR.html identifiers: - biotools:transcriptr -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-transcriptr diff --git a/data/transview/bioconda_transview.yaml b/data/transview/bioconda_transview.yaml index 12adcaef1e62d..3cb2121808bb3 100644 --- a/data/transview/bioconda_transview.yaml +++ b/data/transview/bioconda_transview.yaml @@ -4,7 +4,6 @@ description: This package provides efficient tools to generate, access and displ home: https://bioconductor.org/packages/3.10/bioc/html/TransView.html identifiers: - biotools:transview -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-transview diff --git a/data/trigger/bioconda_trigger.yaml b/data/trigger/bioconda_trigger.yaml index d824f280d73ac..401d103bb4eb3 100644 --- a/data/trigger/bioconda_trigger.yaml +++ b/data/trigger/bioconda_trigger.yaml @@ -11,7 +11,6 @@ description: 'This R package provides tools for the statistical analysis of inte home: https://bioconductor.org/packages/3.10/bioc/html/trigger.html identifiers: - biotools:trigger -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-trigger diff --git a/data/trio/bioconda_trio.yaml b/data/trio/bioconda_trio.yaml index 871ed661e2d75..bafb9f6933c31 100644 --- a/data/trio/bioconda_trio.yaml +++ b/data/trio/bioconda_trio.yaml @@ -8,7 +8,6 @@ description: Testing SNPs and SNP interactions with a genotypic TDT. This packag home: https://bioconductor.org/packages/3.10/bioc/html/trio.html identifiers: - biotools:trio -- doi:10.1038/nmeth.3252 license: LGPL-2 license_file: /lib/R/share/licenses/LGPL-2 name: bioconductor-trio diff --git a/data/tvtb/bioconda_tvtb.yaml b/data/tvtb/bioconda_tvtb.yaml index 5967c82876dc5..9eb60d4823054 100644 --- a/data/tvtb/bioconda_tvtb.yaml +++ b/data/tvtb/bioconda_tvtb.yaml @@ -7,7 +7,6 @@ description: The package provides S4 classes and methods to filter, summarise an home: https://bioconductor.org/packages/3.10/bioc/html/TVTB.html identifiers: - biotools:tvtb -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-tvtb summary: 'TVTB: The VCF Tool Box' diff --git a/data/uniprot.ws/bioconda_uniprot.ws.yaml b/data/uniprot.ws/bioconda_uniprot.ws.yaml index b93ab4c90b09a..ac64e3697bf68 100644 --- a/data/uniprot.ws/bioconda_uniprot.ws.yaml +++ b/data/uniprot.ws/bioconda_uniprot.ws.yaml @@ -4,7 +4,6 @@ description: A collection of functions for retrieving, processing and repackagin home: https://bioconductor.org/packages/3.10/bioc/html/UniProt.ws.html identifiers: - biotools:uniprot.ws -- doi:10.1038/nmeth.3252 license: Artistic License 2.0 name: bioconductor-uniprot.ws summary: R Interface to UniProt Web Services diff --git a/data/variantfiltering/bioconda_variantfiltering.yaml b/data/variantfiltering/bioconda_variantfiltering.yaml index 23ded52c7bb4c..78942f229dc4d 100644 --- a/data/variantfiltering/bioconda_variantfiltering.yaml +++ b/data/variantfiltering/bioconda_variantfiltering.yaml @@ -5,7 +5,6 @@ description: Filter genetic variants using different criteria such as inheritanc home: https://bioconductor.org/packages/3.10/bioc/html/VariantFiltering.html identifiers: - biotools:variantfiltering -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-variantfiltering summary: Filtering of coding and non-coding genetic variants diff --git a/data/weaver/bioconda_weaver.yaml b/data/weaver/bioconda_weaver.yaml index 2a939d85d28b9..cfc86119a3f5d 100644 --- a/data/weaver/bioconda_weaver.yaml +++ b/data/weaver/bioconda_weaver.yaml @@ -4,7 +4,6 @@ description: This package provides enhancements on the Sweave() function in the home: https://bioconductor.org/packages/3.10/bioc/html/weaver.html identifiers: - biotools:weaver -- doi:10.1038/nmeth.3252 license: GPL-2 license_file: /lib/R/share/licenses/GPL-2 name: bioconductor-weaver diff --git a/data/xvector/bioconda_xvector.yaml b/data/xvector/bioconda_xvector.yaml index 7c4b734feae6e..e4c82799b2d82 100644 --- a/data/xvector/bioconda_xvector.yaml +++ b/data/xvector/bioconda_xvector.yaml @@ -4,7 +4,6 @@ description: Provides memory efficient S4 classes for storing sequences "externa home: https://bioconductor.org/packages/3.10/bioc/html/XVector.html identifiers: - biotools:xvector -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-xvector summary: Foundation of external vector representation and manipulation in Bioconductor diff --git a/data/yapsa/bioconda_yapsa.yaml b/data/yapsa/bioconda_yapsa.yaml index a78230e4148d7..17e50c69df9f9 100644 --- a/data/yapsa/bioconda_yapsa.yaml +++ b/data/yapsa/bioconda_yapsa.yaml @@ -7,7 +7,6 @@ description: This package provides functions and routines useful in the analysis home: https://bioconductor.org/packages/3.10/bioc/html/YAPSA.html identifiers: - biotools:yapsa -- doi:10.1038/nmeth.3252 license: GPL-3 license_file: /lib/R/share/licenses/GPL-3 name: bioconductor-yapsa diff --git a/data/yaqcaffy/bioconda_yaqcaffy.yaml b/data/yaqcaffy/bioconda_yaqcaffy.yaml index 2b4f570e5e25c..b64027a793a72 100644 --- a/data/yaqcaffy/bioconda_yaqcaffy.yaml +++ b/data/yaqcaffy/bioconda_yaqcaffy.yaml @@ -4,7 +4,6 @@ description: Quality control of Affymetrix GeneChip expression data and reproduc home: https://bioconductor.org/packages/3.10/bioc/html/yaqcaffy.html identifiers: - biotools:yaqcaffy -- doi:10.1038/nmeth.3252 license: Artistic-2.0 name: bioconductor-yaqcaffy summary: Affymetrix expression data quality control and reproducibility analysis diff --git a/data/zlibbioc/bioconda_zlibbioc.yaml b/data/zlibbioc/bioconda_zlibbioc.yaml index 433b88d5c0e3d..06e74d4d88b60 100644 --- a/data/zlibbioc/bioconda_zlibbioc.yaml +++ b/data/zlibbioc/bioconda_zlibbioc.yaml @@ -6,7 +6,6 @@ description: This package uses the source code of zlib-1.2.5 to create libraries home: https://bioconductor.org/packages/3.10/bioc/html/zlibbioc.html identifiers: - biotools:zlibbioc -- doi:10.1038/nmeth.3252 license: Artistic-2.0 + file LICENSE license_file: LICENSE name: bioconductor-zlibbioc From ad3ee4a87e72217ab277fc97691e707f4975104f Mon Sep 17 00:00:00 2001 From: Tools Platform Ecosystem bot Date: Fri, 28 Feb 2020 21:50:17 +0000 Subject: [PATCH 2/2] build bioschemas on Fri Feb 28 21:50:15 UTC 2020 --- data/1000genomes/1000genomesbioschemas.jsonld | 6 +-- ...enomes_assembly_converterbioschemas.jsonld | 4 +- .../1000genomes_data_slicerbioschemas.jsonld | 4 +- ...omes_id_history_converterbioschemas.jsonld | 2 +- ..._variation_pattern_finderbioschemas.jsonld | 4 +- data/13check_rna/13check_rnabioschemas.jsonld | 8 +-- data/2d-mh/2d-mhbioschemas.jsonld | 8 +-- data/2d-page/2d-pagebioschemas.jsonld | 4 +- data/2dprot/2dprotbioschemas.jsonld | 4 +- data/2dss/2dssbioschemas.jsonld | 8 +-- .../2struccomparebioschemas.jsonld | 20 ++++---- data/3d-blast/3d-blastbioschemas.jsonld | 10 ++-- data/3d-dart/3d-dartbioschemas.jsonld | 10 ++-- data/3d-e-chem/3d-e-chembioschemas.jsonld | 16 +++--- .../3d-footprintbioschemas.jsonld | 4 +- data/3d-partner/3d-partnerbioschemas.jsonld | 8 +-- data/3d-pssm/3d-pssmbioschemas.jsonld | 4 +- data/3dbionotes/3dbionotesbioschemas.jsonld | 8 +-- data/3dem_loupe/3dem_loupebioschemas.jsonld | 2 +- .../3dembenchmarkbioschemas.jsonld | 4 +- data/3did/3didbioschemas.jsonld | 4 +- .../3dligandsitebioschemas.jsonld | 2 +- .../3dmem-enzymebioschemas.jsonld | 4 +- data/3dmol/3dmolbioschemas.jsonld | 4 +- 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data/affyilm/affyilmbioschemas.jsonld | 8 +-- data/affyio/affyiobioschemas.jsonld | 8 +-- data/affylmgui/affylmguibioschemas.jsonld | 20 ++++---- ...x_netaffx_analysis_centerbioschemas.jsonld | 4 +- data/affypara/affyparabioschemas.jsonld | 2 +- data/affyparaebi/affyparaebibioschemas.jsonld | 4 +- data/affypdnn/affypdnnbioschemas.jsonld | 8 +-- data/affyplm/affyplmbioschemas.jsonld | 2 +- .../affyqcreportbioschemas.jsonld | 6 +-- .../affyrnadegradationbioschemas.jsonld | 8 +-- .../aflpinsilicobioschemas.jsonld | 2 +- data/afnetwork/afnetworkbioschemas.jsonld | 12 ++--- data/afold/afoldbioschemas.jsonld | 30 +++++------ data/afq-browser/afq-browserbioschemas.jsonld | 2 +- data/aftol/aftolbioschemas.jsonld | 4 +- data/afumid/afumidbioschemas.jsonld | 14 +++--- data/agdex/agdexbioschemas.jsonld | 8 +-- data/agenda/agendabioschemas.jsonld | 4 +- .../agestructurebioschemas.jsonld | 4 +- data/aggloindel/aggloindelbioschemas.jsonld | 8 +-- ...egate_scores_in_intervalsbioschemas.jsonld | 2 +- data/aggrescan3d/aggrescan3dbioschemas.jsonld | 8 +-- data/agilp/agilpbioschemas.jsonld | 2 +- data/agimicrorna/agimicrornabioschemas.jsonld | 4 +- data/agotool/agotoolbioschemas.jsonld | 4 +- data/agplus/agplusbioschemas.jsonld | 4 +- data/agrigo/agrigobioschemas.jsonld | 8 +-- data/agris/agrisbioschemas.jsonld | 4 +- data/ahtpdb/ahtpdbbioschemas.jsonld | 12 ++--- data/ai_ti-rads/ai_ti-radsbioschemas.jsonld | 2 +- data/aicd/aicdbioschemas.jsonld | 6 +-- data/aims/aimsbioschemas.jsonld | 4 +- data/airlab/airlabbioschemas.jsonld | 2 +- data/aivar/aivarbioschemas.jsonld | 8 +-- data/akid/akidbioschemas.jsonld | 4 +- data/aksmooth/aksmoothbioschemas.jsonld | 4 +- data/aladyn/aladynbioschemas.jsonld | 4 +- data/alamut/alamutbioschemas.jsonld | 4 +- data/alchemy/alchemybioschemas.jsonld | 4 +- data/aldex2/aldex2bioschemas.jsonld | 20 ++++---- data/ale/alebioschemas.jsonld | 4 +- data/aleaves/aleavesbioschemas.jsonld | 4 +- data/alevin/alevinbioschemas.jsonld | 18 +++---- data/alfred-g/alfred-gbioschemas.jsonld | 4 +- data/alfresco/alfrescobioschemas.jsonld | 4 +- data/alfy/alfybioschemas.jsonld | 4 +- data/algaepath/algaepathbioschemas.jsonld | 8 +-- data/alggen/alggenbioschemas.jsonld | 2 +- data/algpred/algpredbioschemas.jsonld | 4 +- data/align-gvgd/align-gvgdbioschemas.jsonld | 4 +- data/align-paths/align-pathsbioschemas.jsonld | 8 +-- data/align/alignbioschemas.jsonld | 16 +++--- data/alignace/alignacebioschemas.jsonld | 8 +-- data/aligncopy/aligncopybioschemas.jsonld | 18 +++---- .../aligncopypairbioschemas.jsonld | 8 +-- data/alignme/alignmebioschemas.jsonld | 4 +- .../alignment-annotatorbioschemas.jsonld | 4 +- .../alignmentcomparatorbioschemas.jsonld | 4 +- data/alignsec/alignsecbioschemas.jsonld | 2 +- data/alignstat/alignstatbioschemas.jsonld | 20 ++++---- data/alkemio/alkemiobioschemas.jsonld | 4 +- data/all-fit/all-fitbioschemas.jsonld | 2 +- data/all-p/all-pbioschemas.jsonld | 2 +- .../allele_frequency_netbioschemas.jsonld | 4 +- .../alleleretainbioschemas.jsonld | 4 +- .../allelicimbalancebioschemas.jsonld | 14 +++--- .../allen_brain_atlas-apibioschemas.jsonld | 2 +- .../allen_brain_atlasbioschemas.jsonld | 2 +- data/allerdictor/allerdictorbioschemas.jsonld | 4 +- data/allergenfp/allergenfpbioschemas.jsonld | 4 +- data/allergome/allergomebioschemas.jsonld | 2 +- data/allertop/allertopbioschemas.jsonld | 4 +- data/allim/allimbioschemas.jsonld | 8 +-- data/allodriver/allodriverbioschemas.jsonld | 16 +++--- data/allopred/allopredbioschemas.jsonld | 10 ++-- data/alloscore/alloscorebioschemas.jsonld | 4 +- data/allosite/allositebioschemas.jsonld | 4 +- data/allpaths-lg/allpaths-lgbioschemas.jsonld | 8 +-- data/allpaths/allpathsbioschemas.jsonld | 4 +- .../almostsignificantbioschemas.jsonld | 8 +-- data/alohomora/alohomorabioschemas.jsonld | 4 +- data/alpha/alphabioschemas.jsonld | 4 +- data/alphampsim/alphampsimbioschemas.jsonld | 4 +- data/alphapred/alphapredbioschemas.jsonld | 4 +- data/alpine/alpinebioschemas.jsonld | 8 +-- data/alsace/alsacebioschemas.jsonld | 2 +- data/altcdfenvs/altcdfenvsbioschemas.jsonld | 2 +- data/alter/alterbioschemas.jsonld | 4 +- ...ernative_splicing_gallerybioschemas.jsonld | 8 +-- .../althapalignrbioschemas.jsonld | 4 +- data/altools/altoolsbioschemas.jsonld | 14 +++--- data/aluscancnv2/aluscancnv2bioschemas.jsonld | 10 ++-- data/alview/alviewbioschemas.jsonld | 4 +- data/alvisir/alvisirbioschemas.jsonld | 4 +- data/amas/amasbioschemas.jsonld | 26 +++++----- data/amatreader/amatreaderbioschemas.jsonld | 4 +- data/amber/amberbioschemas.jsonld | 2 +- .../ambergpumdsimulationbioschemas.jsonld | 18 +++---- data/ambertools/ambertoolsbioschemas.jsonld | 4 +- .../ambit-smirksbioschemas.jsonld | 4 +- data/amda/amdabioschemas.jsonld | 22 ++++---- data/amen/amenbioschemas.jsonld | 16 +++--- data/amica/amicabioschemas.jsonld | 2 +- data/amigene/amigenebioschemas.jsonld | 4 +- data/amigo_2/amigo_2bioschemas.jsonld | 4 +- data/ammodels/ammodelsbioschemas.jsonld | 2 +- data/amoebadb/amoebadbbioschemas.jsonld | 4 +- data/amordad/amordadbioschemas.jsonld | 4 +- data/amountain/amountainbioschemas.jsonld | 6 +-- data/amped/ampedbioschemas.jsonld | 4 +- data/amphoranet/amphoranetbioschemas.jsonld | 4 +- data/amphoravizu/amphoravizubioschemas.jsonld | 4 +- data/amplimap/amplimapbioschemas.jsonld | 4 +- .../amplimethprofilerbioschemas.jsonld | 8 +-- data/ampliqueso/ampliquesobioschemas.jsonld | 4 +- data/ampred/ampredbioschemas.jsonld | 4 +- data/amps-nmr/amps-nmrbioschemas.jsonld | 2 +- data/ams/amsbioschemas.jsonld | 14 +++--- data/amt/amtbioschemas.jsonld | 14 +++--- data/amtdb/amtdbbioschemas.jsonld | 20 ++++---- data/amtrak/amtrakbioschemas.jsonld | 14 +++--- data/amylpred/amylpredbioschemas.jsonld | 4 +- data/amylpred2/amylpred2bioschemas.jsonld | 8 +-- data/amypdb/amypdbbioschemas.jsonld | 4 +- .../anaconda_cnvbioschemas.jsonld | 4 +- .../analysispageserverbioschemas.jsonld | 8 +-- data/analyzer/analyzerbioschemas.jsonld | 10 ++-- data/anamir/anamirbioschemas.jsonld | 8 +-- data/ananke/anankebioschemas.jsonld | 14 +++--- data/anaquin/anaquinbioschemas.jsonld | 16 +++--- data/anarci/anarcibioschemas.jsonld | 6 +-- data/anastasia/anastasiabioschemas.jsonld | 8 +-- data/anca/ancabioschemas.jsonld | 12 ++--- data/anceshc/anceshcbioschemas.jsonld | 4 +- .../anchor_expedition_suitebioschemas.jsonld | 4 +- .../anchor_tfbs_predictionbioschemas.jsonld | 4 +- ...red_multiplier_calculatorbioschemas.jsonld | 4 +- .../ancis-pytorchbioschemas.jsonld | 6 +-- data/ancorr/ancorrbioschemas.jsonld | 4 +- data/andi/andibioschemas.jsonld | 4 +- data/andis/andisbioschemas.jsonld | 18 +++---- data/andom/andombioschemas.jsonld | 2 +- data/aneufinder/aneufinderbioschemas.jsonld | 22 ++++---- data/aneuvis/aneuvisbioschemas.jsonld | 12 ++--- data/anf/anfbioschemas.jsonld | 4 +- data/anglerfish/anglerfishbioschemas.jsonld | 22 ++++---- .../angsd-wrapperbioschemas.jsonld | 4 +- data/angsd/angsdbioschemas.jsonld | 2 +- .../angular-ripleys-kbioschemas.jsonld | 4 +- data/animalnexus/animalnexusbioschemas.jsonld | 8 +-- data/aniseed/aniseedbioschemas.jsonld | 10 ++-- data/anm/anmbioschemas.jsonld | 4 +- ...lycolysis-flux-predictionbioschemas.jsonld | 20 ++++---- data/ann-solo/ann-solobioschemas.jsonld | 4 +- data/annaffy/annaffybioschemas.jsonld | 4 +- data/anncolvar/anncolvarbioschemas.jsonld | 20 ++++---- data/annmap/annmapbioschemas.jsonld | 8 +-- data/anno-j/anno-jbioschemas.jsonld | 4 +- data/annocript/annocriptbioschemas.jsonld | 4 +- data/annokey/annokeybioschemas.jsonld | 4 +- data/annolnc/annolncbioschemas.jsonld | 18 +++---- data/annotate/annotatebioschemas.jsonld | 2 +- .../annotategenesbioschemas.jsonld | 4 +- .../annotategenomicregionsbioschemas.jsonld | 6 +-- .../annotatepeaksbioschemas.jsonld | 4 +- .../annotationdbibioschemas.jsonld | 4 +- .../annotationfilterbioschemas.jsonld | 4 +- .../annotationforgebioschemas.jsonld | 6 +-- .../annotationfuncsbioschemas.jsonld | 4 +- .../annotationhubbioschemas.jsonld | 4 +- .../annotationhubdatabioschemas.jsonld | 8 +-- .../annotationtoolsbioschemas.jsonld | 20 ++++---- data/annotatr/annotatrbioschemas.jsonld | 4 +- data/annotqtl/annotqtlbioschemas.jsonld | 4 +- data/annotree/annotreebioschemas.jsonld | 4 +- data/annotsv/annotsvbioschemas.jsonld | 8 +-- data/annovar/annovarbioschemas.jsonld | 4 +- ...nnovar_annotate_variationbioschemas.jsonld | 4 +- .../annovar_summarizebioschemas.jsonld | 4 +- data/anocva/anocvabioschemas.jsonld | 8 +-- data/anolea/anoleabioschemas.jsonld | 4 +- data/anota/anotabioschemas.jsonld | 8 +-- data/anota2seq/anota2seqbioschemas.jsonld | 4 +- data/anpela/anpelabioschemas.jsonld | 10 ++-- data/antar/antarbioschemas.jsonld | 4 +- data/antarna/antarnabioschemas.jsonld | 14 +++--- .../antiangiopredbioschemas.jsonld | 4 +- data/antibp/antibpbioschemas.jsonld | 2 +- data/anticp/anticpbioschemas.jsonld | 2 +- data/antigendb/antigendbbioschemas.jsonld | 2 +- data/antigenic/antigenicbioschemas.jsonld | 16 +++--- .../antiprofilesbioschemas.jsonld | 4 +- data/antismash/antismashbioschemas.jsonld | 6 +-- data/antmap/antmapbioschemas.jsonld | 4 +- data/anyexpress/anyexpressbioschemas.jsonld | 4 +- .../apache_tavernabioschemas.jsonld | 18 +++---- data/apcomplex/apcomplexbioschemas.jsonld | 2 +- data/apecs/apecsbioschemas.jsonld | 4 +- data/apeglm/apeglmbioschemas.jsonld | 4 +- data/apex/apexbioschemas.jsonld | 2 +- data/apex_r/apex_rbioschemas.jsonld | 8 +-- data/aphidbase/aphidbasebioschemas.jsonld | 4 +- data/apid/apidbioschemas.jsonld | 2 +- data/apollo/apollobioschemas.jsonld | 4 +- data/appa/appabioschemas.jsonld | 26 +++++----- data/apparent/apparentbioschemas.jsonld | 12 ++--- data/appex/appexbioschemas.jsonld | 4 +- data/appris/apprisbioschemas.jsonld | 4 +- data/approve/approvebioschemas.jsonld | 4 +- data/apricot/apricotbioschemas.jsonld | 12 ++--- data/apse/apsebioschemas.jsonld | 4 +- data/aqua-duct/aqua-ductbioschemas.jsonld | 4 +- data/aquaria/aquariabioschemas.jsonld | 20 ++++---- data/aquasaxs/aquasaxsbioschemas.jsonld | 4 +- data/ar_nhpred/ar_nhpredbioschemas.jsonld | 4 +- .../arabidopsis_efp_browserbioschemas.jsonld | 2 +- ...growth_regulators_networkbioschemas.jsonld | 4 +- ...opsis_interactions_viewerbioschemas.jsonld | 20 ++++---- data/arachne/arachnebioschemas.jsonld | 4 +- .../arachnoserverbioschemas.jsonld | 4 +- data/aracne/aracnebioschemas.jsonld | 4 +- data/aramemnon/aramemnonbioschemas.jsonld | 16 +++--- data/araport/araportbioschemas.jsonld | 2 +- data/arc/arcbioschemas.jsonld | 4 +- data/arcadia/arcadiabioschemas.jsonld | 4 +- data/archaeafun/archaeafunbioschemas.jsonld | 22 ++++---- .../archaeopteryxbioschemas.jsonld | 4 +- data/archcandy/archcandybioschemas.jsonld | 4 +- data/archdb/archdbbioschemas.jsonld | 16 +++--- data/archidart/archidartbioschemas.jsonld | 8 +-- data/archip/archipbioschemas.jsonld | 4 +- data/archki/archkibioschemas.jsonld | 4 +- data/archpred/archpredbioschemas.jsonld | 2 +- data/archschema/archschemabioschemas.jsonld | 4 +- data/ard2/ard2bioschemas.jsonld | 4 +- data/ardock/ardockbioschemas.jsonld | 8 +-- data/aresite/aresitebioschemas.jsonld | 4 +- data/arga/argabioschemas.jsonld | 4 +- .../argonnenatlabbioschemas.jsonld | 4 +- data/argot2/argot2bioschemas.jsonld | 16 +++--- data/argyle/argylebioschemas.jsonld | 8 +-- data/aria/ariabioschemas.jsonld | 4 +- data/arioc/ariocbioschemas.jsonld | 4 +- .../arion_4_omicsbioschemas.jsonld | 2 +- data/arkmap/arkmapbioschemas.jsonld | 4 +- data/arks/arksbioschemas.jsonld | 4 +- data/arlequin/arlequinbioschemas.jsonld | 8 +-- data/armor/armorbioschemas.jsonld | 34 ++++++------- data/arp_warp/arp_warpbioschemas.jsonld | 4 +- data/arpeggio/arpeggiobioschemas.jsonld | 18 +++---- .../arrayexpressbioschemas.jsonld | 4 +- .../arrayexpresshtsbioschemas.jsonld | 4 +- data/arraylasso/arraylassobioschemas.jsonld | 4 +- data/arraymaker/arraymakerbioschemas.jsonld | 4 +- data/arraymap/arraymapbioschemas.jsonld | 4 +- data/arrayminer/arrayminerbioschemas.jsonld | 4 +- data/arraymvout/arraymvoutbioschemas.jsonld | 6 +-- data/arraypipe/arraypipebioschemas.jsonld | 4 +- .../arrayqualitybioschemas.jsonld | 4 +- data/arraystar/arraystarbioschemas.jsonld | 4 +- data/arraytools/arraytoolsbioschemas.jsonld | 4 +- data/arraytrack/arraytrackbioschemas.jsonld | 4 +- data/arraytv/arraytvbioschemas.jsonld | 8 +-- data/arrayxpath/arrayxpathbioschemas.jsonld | 4 +- data/arrest/arrestbioschemas.jsonld | 4 +- data/arrp/arrpbioschemas.jsonld | 4 +- data/arshift/arshiftbioschemas.jsonld | 4 +- data/artemis/artemisbioschemas.jsonld | 4 +- data/arto/artobioschemas.jsonld | 2 +- data/artp2/artp2bioschemas.jsonld | 8 +-- data/arts/artsbioschemas.jsonld | 4 +- .../arts_antibioticsbioschemas.jsonld | 18 +++---- data/as2ts/as2tsbioschemas.jsonld | 4 +- data/asaaap/asaaapbioschemas.jsonld | 8 +-- data/asaim/asaimbioschemas.jsonld | 4 +- data/asap/asapbioschemas.jsonld | 8 +-- .../asap_pipelinebioschemas.jsonld | 4 +- data/asatura/asaturabioschemas.jsonld | 4 +- data/asc/ascbioschemas.jsonld | 8 +-- data/ascend/ascendbioschemas.jsonld | 4 +- data/asd/asdbioschemas.jsonld | 8 +-- data/asgsca/asgscabioschemas.jsonld | 8 +-- data/asics/asicsbioschemas.jsonld | 4 +- data/asmvar/asmvarbioschemas.jsonld | 12 ++--- data/asnr/asnrbioschemas.jsonld | 14 +++--- data/aspgd/aspgdbioschemas.jsonld | 4 +- .../aspic-geneidbioschemas.jsonld | 4 +- data/aspli/asplibioschemas.jsonld | 4 +- data/aspu/aspubioschemas.jsonld | 4 +- data/aspwood/aspwoodbioschemas.jsonld | 4 +- data/asreml/asremlbioschemas.jsonld | 4 +- data/assam/assambioschemas.jsonld | 4 +- .../assaycorrectorbioschemas.jsonld | 4 +- data/assayr/assayrbioschemas.jsonld | 12 ++--- .../assembly_converterbioschemas.jsonld | 8 +-- .../assembly_pcr_oligo_makerbioschemas.jsonld | 4 +- data/assemblyget/assemblygetbioschemas.jsonld | 2 +- .../assemblymanagerbioschemas.jsonld | 4 +- .../assemblyticsbioschemas.jsonld | 4 +- data/asseq/asseqbioschemas.jsonld | 2 +- data/asset/assetbioschemas.jsonld | 4 +- data/assign/assignbioschemas.jsonld | 8 +-- data/assist/assistbioschemas.jsonld | 4 +- .../assist_activebioschemas.jsonld | 4 +- .../association_viewerbioschemas.jsonld | 4 +- data/astalavista/astalavistabioschemas.jsonld | 4 +- data/astd/astdbioschemas.jsonld | 4 +- data/astral/astralbioschemas.jsonld | 2 +- ...ication_and_analysis_aquabioschemas.jsonld | 4 +- data/atac/atacbioschemas.jsonld | 4 +- data/atacseqqc/atacseqqcbioschemas.jsonld | 4 +- data/ataris/atarisbioschemas.jsonld | 8 +-- data/atcc/atccbioschemas.jsonld | 2 +- data/atcoecis/atcoecisbioschemas.jsonld | 4 +- data/atfusiondb/atfusiondbbioschemas.jsonld | 8 +-- data/atlasrdf/atlasrdfbioschemas.jsonld | 4 +- data/atomap/atomapbioschemas.jsonld | 12 ++--- .../atomicchargecalculatorbioschemas.jsonld | 12 ++--- data/atpid/atpidbioschemas.jsonld | 4 +- data/atram/atrambioschemas.jsonld | 20 ++++---- data/atrhunter/atrhunterbioschemas.jsonld | 8 +-- data/atsnp/atsnpbioschemas.jsonld | 4 +- data/atsubp/atsubpbioschemas.jsonld | 4 +- data/attract/attractbioschemas.jsonld | 8 +-- data/aucell/aucellbioschemas.jsonld | 4 +- data/aurea/aureabioschemas.jsonld | 10 ++-- data/aureme/auremebioschemas.jsonld | 4 +- data/aureolib/aureolibbioschemas.jsonld | 12 ++--- data/autalasso/autalassobioschemas.jsonld | 14 +++--- data/autismkb/autismkbbioschemas.jsonld | 4 +- .../auto-rickshawbioschemas.jsonld | 10 ++-- .../autoassemblydbioschemas.jsonld | 4 +- data/autoassign/autoassignbioschemas.jsonld | 4 +- .../autoclass_ijmbioschemas.jsonld | 4 +- data/autocsa/autocsabioschemas.jsonld | 4 +- .../autodesk_molecule_viewerbioschemas.jsonld | 2 +- .../autodock_vinabioschemas.jsonld | 4 +- data/autohd/autohdbioschemas.jsonld | 4 +- data/autoosc/autooscbioschemas.jsonld | 4 +- data/autopad/autopadbioschemas.jsonld | 4 +- data/autoroot/autorootbioschemas.jsonld | 12 ++--- data/autoseqman/autoseqmanbioschemas.jsonld | 12 ++--- data/autosequin/autosequinbioschemas.jsonld | 4 +- data/autosite/autositebioschemas.jsonld | 10 ++-- data/autosnpdb/autosnpdbbioschemas.jsonld | 4 +- data/avedissr/avedissrbioschemas.jsonld | 14 +++--- data/avia/aviabioschemas.jsonld | 4 +- data/avpdb/avpdbbioschemas.jsonld | 12 ++--- data/avppred/avppredbioschemas.jsonld | 4 +- .../axiom_analysis_suitebioschemas.jsonld | 14 +++--- data/axiome/axiomebioschemas.jsonld | 4 +- data/axonpacking/axonpackingbioschemas.jsonld | 4 +- data/ayla/aylabioschemas.jsonld | 4 +- data/azahar/azaharbioschemas.jsonld | 4 +- data/azara/azarabioschemas.jsonld | 4 +- data/b6db/b6dbbioschemas.jsonld | 4 +- data/baalchip/baalchipbioschemas.jsonld | 4 +- data/babelomics/babelomicsbioschemas.jsonld | 4 +- data/bac/bacbioschemas.jsonld | 4 +- data/baca/bacabioschemas.jsonld | 10 ++-- data/bacarena/bacarenabioschemas.jsonld | 4 +- data/bacdive/bacdivebioschemas.jsonld | 6 +-- data/bacdive_ws/bacdive_wsbioschemas.jsonld | 4 +- data/bacdiver/bacdiverbioschemas.jsonld | 4 +- data/bacello/bacellobioschemas.jsonld | 2 +- data/backclip/backclipbioschemas.jsonld | 4 +- .../backtranambig-ebibioschemas.jsonld | 4 +- .../backtranambigbioschemas.jsonld | 10 ++-- .../backtranseq-ebibioschemas.jsonld | 8 +-- data/backtranseq/backtranseqbioschemas.jsonld | 16 +++--- data/bacmap/bacmapbioschemas.jsonld | 4 +- data/bacoca/bacocabioschemas.jsonld | 2 +- data/bacom/bacombioschemas.jsonld | 4 +- data/bacon/baconbioschemas.jsonld | 2 +- data/bacpp/bacppbioschemas.jsonld | 4 +- data/bactag/bactagbioschemas.jsonld | 14 +++--- .../bactgeneshowbioschemas.jsonld | 4 +- data/bactsnp/bactsnpbioschemas.jsonld | 14 +++--- data/bader/baderbioschemas.jsonld | 4 +- .../badregionfinderbioschemas.jsonld | 6 +-- data/badtrip/badtripbioschemas.jsonld | 4 +- data/bagel/bagelbioschemas.jsonld | 4 +- data/bagel3/bagel3bioschemas.jsonld | 4 +- data/bagheera/bagheerabioschemas.jsonld | 4 +- data/bagpipe/bagpipebioschemas.jsonld | 4 +- data/bait/baitbioschemas.jsonld | 6 +-- data/balbes/balbesbioschemas.jsonld | 4 +- data/balboa/balboabioschemas.jsonld | 4 +- data/baldr/baldrbioschemas.jsonld | 4 +- data/bali-phy/bali-phybioschemas.jsonld | 4 +- data/ballgown/ballgownbioschemas.jsonld | 4 +- data/bam2fastq/bam2fastqbioschemas.jsonld | 2 +- data/bam2roi/bam2roibioschemas.jsonld | 4 +- .../bam_to_bigwigbioschemas.jsonld | 2 +- data/bam_to_sam/bam_to_sambioschemas.jsonld | 4 +- .../bam_to_sam_parallelbioschemas.jsonld | 4 +- data/bambino/bambinobioschemas.jsonld | 4 +- data/bamm-sc/bamm-scbioschemas.jsonld | 12 ++--- data/bamseek/bamseekbioschemas.jsonld | 2 +- data/bamsi/bamsibioschemas.jsonld | 2 +- data/bamsignals/bamsignalsbioschemas.jsonld | 4 +- data/bamstats/bamstatsbioschemas.jsonld | 4 +- data/bamtools/bamtoolsbioschemas.jsonld | 2 +- data/bamview/bamviewbioschemas.jsonld | 4 +- data/banana/bananabioschemas.jsonld | 18 +++---- .../band_dyn_progbioschemas.jsonld | 4 +- data/bandage/bandagebioschemas.jsonld | 14 +++--- data/bankit/bankitbioschemas.jsonld | 4 +- data/banocc/banoccbioschemas.jsonld | 2 +- data/bar-plus/bar-plusbioschemas.jsonld | 4 +- data/bar/barbioschemas.jsonld | 4 +- data/barcod/barcodbioschemas.jsonld | 4 +- .../barcode_generatorbioschemas.jsonld | 4 +- data/barcosel/barcoselbioschemas.jsonld | 2 +- .../barcrawl_bartabbioschemas.jsonld | 4 +- data/barnaba/barnababioschemas.jsonld | 4 +- data/barnacle/barnaclebioschemas.jsonld | 4 +- data/barrnap/barrnapbioschemas.jsonld | 8 +-- data/bartender/bartenderbioschemas.jsonld | 6 +-- data/basecallqc/basecallqcbioschemas.jsonld | 4 +- data/basespacer/basespacerbioschemas.jsonld | 4 +- data/basic/basicbioschemas.jsonld | 4 +- data/basic4cseq/basic4cseqbioschemas.jsonld | 4 +- data/basics/basicsbioschemas.jsonld | 8 +-- data/basiliscan/basiliscanbioschemas.jsonld | 12 ++--- data/basilisk/basiliskbioschemas.jsonld | 4 +- data/bastion6/bastion6bioschemas.jsonld | 4 +- data/basys/basysbioschemas.jsonld | 4 +- .../bat_detectivebioschemas.jsonld | 4 +- data/batchmap/batchmapbioschemas.jsonld | 2 +- data/batchqc/batchqcbioschemas.jsonld | 16 +++--- data/batman/batmanbioschemas.jsonld | 4 +- data/batmat/batmatbioschemas.jsonld | 4 +- data/batmeth2/batmeth2bioschemas.jsonld | 20 ++++---- data/bats/batsbioschemas.jsonld | 8 +-- data/bayescall/bayescallbioschemas.jsonld | 8 +-- data/bayescan/bayescanbioschemas.jsonld | 2 +- data/bayesembler/bayesemblerbioschemas.jsonld | 4 +- data/bayesforest/bayesforestbioschemas.jsonld | 4 +- data/bayesfst/bayesfstbioschemas.jsonld | 4 +- .../bayesknockdownbioschemas.jsonld | 4 +- data/bayesmd/bayesmdbioschemas.jsonld | 8 +-- data/bayesmendel/bayesmendelbioschemas.jsonld | 2 +- data/bayesmix/bayesmixbioschemas.jsonld | 4 +- data/bayesmotif/bayesmotifbioschemas.jsonld | 2 +- data/bayespeak/bayespeakbioschemas.jsonld | 4 +- .../bayespi-bar2bioschemas.jsonld | 20 ++++---- data/bayessc/bayesscbioschemas.jsonld | 4 +- data/bayestyper/bayestyperbioschemas.jsonld | 4 +- data/baynorm/baynormbioschemas.jsonld | 4 +- data/bayseq/bayseqbioschemas.jsonld | 4 +- data/bayz/bayzbioschemas.jsonld | 2 +- data/bazam/bazambioschemas.jsonld | 18 +++---- data/bbcanalyzer/bbcanalyzerbioschemas.jsonld | 8 +-- data/bbknn/bbknnbioschemas.jsonld | 4 +- .../bbmri-eu_catalogbioschemas.jsonld | 4 +- .../bbmri-nl_catalogbioschemas.jsonld | 8 +-- .../bbmri-portalbioschemas.jsonld | 4 +- data/bbseq/bbseqbioschemas.jsonld | 2 +- data/bc_snpmax/bc_snpmaxbioschemas.jsonld | 4 +- .../bcbio-nextgenbioschemas.jsonld | 4 +- data/bcbiornaseq/bcbiornaseqbioschemas.jsonld | 4 +- data/bcbtoolkit/bcbtoolkitbioschemas.jsonld | 4 +- data/bcepred/bcepredbioschemas.jsonld | 4 +- .../bcf-tools-catbioschemas.jsonld | 4 +- .../bcf-tools-indexbioschemas.jsonld | 4 +- .../bcf_view_mpileupbioschemas.jsonld | 4 +- data/bcftools/bcftoolsbioschemas.jsonld | 4 +- data/bcheck_rnpb/bcheck_rnpbbioschemas.jsonld | 30 +++++------ data/bcigepred/bcigepredbioschemas.jsonld | 8 +-- data/bcl/bclbioschemas.jsonld | 4 +- data/bcm/bcmbioschemas.jsonld | 4 +- .../bcm_srchlausequtlbioschemas.jsonld | 4 +- data/bcode/bcodebioschemas.jsonld | 4 +- data/bcov/bcovbioschemas.jsonld | 4 +- data/bcrank/bcrankbioschemas.jsonld | 4 +- data/bcrgt/bcrgtbioschemas.jsonld | 4 +- .../bcrocsurfacebioschemas.jsonld | 18 +++---- data/bcseq_bias/bcseq_biasbioschemas.jsonld | 4 +- data/bdbm/bdbmbioschemas.jsonld | 4 +- data/bdvis/bdvisbioschemas.jsonld | 4 +- data/beachmat/beachmatbioschemas.jsonld | 4 +- data/beacon/beaconbioschemas.jsonld | 12 ++--- .../beacon_designerbioschemas.jsonld | 4 +- .../beaconlab_pscanbioschemas.jsonld | 12 ++--- data/beadarray/beadarraybioschemas.jsonld | 16 +++--- .../beadarraysnpbioschemas.jsonld | 8 +-- .../beaddatapackrbioschemas.jsonld | 16 +++--- data/beads/beadsbioschemas.jsonld | 4 +- data/beam/beambioschemas.jsonld | 8 +-- .../bean-counterbioschemas.jsonld | 4 +- data/beap/beapbioschemas.jsonld | 4 +- data/bear/bearbioschemas.jsonld | 4 +- data/bearscc/bearsccbioschemas.jsonld | 4 +- data/beast/beastbioschemas.jsonld | 4 +- data/beast2/beast2bioschemas.jsonld | 8 +-- data/beastling/beastlingbioschemas.jsonld | 4 +- data/beat/beatbioschemas.jsonld | 2 +- data/beatmusic/beatmusicbioschemas.jsonld | 8 +-- ...tsonlab-microbialgenomicsbioschemas.jsonld | 4 +- data/becas/becasbioschemas.jsonld | 4 +- data/beclear/beclearbioschemas.jsonld | 4 +- data/becon/beconbioschemas.jsonld | 4 +- .../bed_bayesianbioschemas.jsonld | 4 +- .../bedgraphtobigwigbioschemas.jsonld | 4 +- data/bedtools/bedtoolsbioschemas.jsonld | 4 +- .../bedtools_bamtobedbioschemas.jsonld | 2 +- ...dtools_coveragebed_countsbioschemas.jsonld | 4 +- ...nomecoveragebed_histogrambioschemas.jsonld | 4 +- .../bedtools_intersectbedbioschemas.jsonld | 2 +- ...bedtools_intersectbed_bambioschemas.jsonld | 4 +- .../bedtools_mergebedgraphbioschemas.jsonld | 4 +- ...edtools_multiintersectbedbioschemas.jsonld | 4 +- data/bedutils/bedutilsbioschemas.jsonld | 4 +- data/beere/beerebioschemas.jsonld | 12 ++--- data/beetlebase/beetlebasebioschemas.jsonld | 4 +- data/bel_commons/bel_commonsbioschemas.jsonld | 4 +- data/benchmarker/benchmarkerbioschemas.jsonld | 16 +++--- data/berex/berexbioschemas.jsonld | 2 +- ...keley_phylogenomics_groupbioschemas.jsonld | 4 +- data/besst/besstbioschemas.jsonld | 4 +- .../best_literaturebioschemas.jsonld | 8 +-- data/bestsel/bestselbioschemas.jsonld | 8 +-- .../betacavitywebbioschemas.jsonld | 2 +- data/betaseq/betaseqbioschemas.jsonld | 4 +- .../betaserpentinebioschemas.jsonld | 6 +-- data/betatpred/betatpredbioschemas.jsonld | 4 +- data/betatpred2/betatpred2bioschemas.jsonld | 8 +-- data/betaturns/betaturnsbioschemas.jsonld | 4 +- data/betavoid/betavoidbioschemas.jsonld | 4 +- data/betaware/betawarebioschemas.jsonld | 4 +- data/bew/bewbioschemas.jsonld | 2 +- data/bfptool/bfptoolbioschemas.jsonld | 12 ++--- data/bfrm/bfrmbioschemas.jsonld | 2 +- data/bgafun/bgafunbioschemas.jsonld | 4 +- data/bgeedb/bgeedbbioschemas.jsonld | 10 ++-- data/bgf/bgfbioschemas.jsonld | 4 +- data/bgmix/bgmixbioschemas.jsonld | 4 +- data/bgmut/bgmutbioschemas.jsonld | 4 +- data/bgsmtr/bgsmtrbioschemas.jsonld | 2 +- data/bgx/bgxbioschemas.jsonld | 4 +- data/bhc/bhcbioschemas.jsonld | 8 +-- data/bhrcr/bhrcrbioschemas.jsonld | 8 +-- data/bi-force/bi-forcebioschemas.jsonld | 18 +++---- data/bialign/bialignbioschemas.jsonld | 6 +-- data/biana/bianabioschemas.jsonld | 12 ++--- data/bianca/biancabioschemas.jsonld | 20 ++++---- data/biclue/bicluebioschemas.jsonld | 4 +- .../bicoverlapperbioschemas.jsonld | 4 +- data/bicpams/bicpamsbioschemas.jsonld | 18 +++---- data/bicycle/bicyclebioschemas.jsonld | 4 +- data/bidas/bidasbioschemas.jsonld | 4 +- data/bidchips/bidchipsbioschemas.jsonld | 4 +- data/bids_apps/bids_appsbioschemas.jsonld | 4 +- data/bierapp/bierappbioschemas.jsonld | 4 +- data/bifet/bifetbioschemas.jsonld | 4 +- data/biggr/biggrbioschemas.jsonld | 18 +++---- data/bigld/bigldbioschemas.jsonld | 4 +- data/bigmelon/bigmelonbioschemas.jsonld | 4 +- .../bigmemoryextrasbioschemas.jsonld | 4 +- data/bignasim/bignasimbioschemas.jsonld | 6 +-- data/bigr_xnat/bigr_xnatbioschemas.jsonld | 4 +- data/bigsi/bigsibioschemas.jsonld | 4 +- data/bigsnpr/bigsnprbioschemas.jsonld | 4 +- data/bigstatsr/bigstatsrbioschemas.jsonld | 2 +- data/bimbam/bimbambioschemas.jsonld | 14 +++--- data/bimm/bimmbioschemas.jsonld | 4 +- data/bin3c/bin3cbioschemas.jsonld | 12 ++--- data/binana/binanabioschemas.jsonld | 4 +- data/binche/binchebioschemas.jsonld | 8 +-- data/bind/bindbioschemas.jsonld | 4 +- data/binda/bindabioschemas.jsonld | 4 +- data/bindash/bindashbioschemas.jsonld | 4 +- data/bindingdb/bindingdbbioschemas.jsonld | 2 +- data/bingo/bingobioschemas.jsonld | 4 +- data/binoculars/binocularsbioschemas.jsonld | 8 +-- data/binom/binombioschemas.jsonld | 4 +- data/binquasi/binquasibioschemas.jsonld | 4 +- data/bio-cigar/bio-cigarbioschemas.jsonld | 4 +- data/bio-formats/bio-formatsbioschemas.jsonld | 2 +- data/bio-jeti/bio-jetibioschemas.jsonld | 4 +- .../bio-samtoolsbioschemas.jsonld | 4 +- data/bio-seco/bio-secobioschemas.jsonld | 4 +- data/bio-tds/bio-tdsbioschemas.jsonld | 8 +-- data/bio2bel/bio2belbioschemas.jsonld | 4 +- data/bioalcidae/bioalcidaebioschemas.jsonld | 4 +- .../bioanalres_barbioschemas.jsonld | 4 +- data/bioassayr/bioassayrbioschemas.jsonld | 12 ++--- data/biobakery/biobakerybioschemas.jsonld | 4 +- data/biobase/biobasebioschemas.jsonld | 18 +++---- data/biobb/biobbbioschemas.jsonld | 12 ++--- data/biobeam/biobeambioschemas.jsonld | 2 +- data/biobike/biobikebioschemas.jsonld | 4 +- data/biobin/biobinbioschemas.jsonld | 4 +- data/biobroom/biobroombioschemas.jsonld | 8 +-- data/biocancer/biocancerbioschemas.jsonld | 4 +- data/biocarta/biocartabioschemas.jsonld | 2 +- .../biocataloguebioschemas.jsonld | 4 +- .../biocatalogue_apibioschemas.jsonld | 4 +- .../bioccasestudiesbioschemas.jsonld | 4 +- data/bioccheck/bioccheckbioschemas.jsonld | 4 +- .../biocfilecachebioschemas.jsonld | 2 +- .../biocgenericsbioschemas.jsonld | 20 ++++---- data/biocgraph/biocgraphbioschemas.jsonld | 8 +-- data/bioclipse-r/bioclipse-rbioschemas.jsonld | 14 +++--- data/bioclipse/bioclipsebioschemas.jsonld | 4 +- data/bioclojure/bioclojurebioschemas.jsonld | 2 +- data/bioconcotk/bioconcotkbioschemas.jsonld | 4 +- data/bioconda/biocondabioschemas.jsonld | 4 +- .../bioconductorbioschemas.jsonld | 4 +- .../biocontainersbioschemas.jsonld | 8 +-- data/biocontext/biocontextbioschemas.jsonld | 4 +- data/biocor/biocorbioschemas.jsonld | 4 +- .../biocparallelbioschemas.jsonld | 2 +- .../biocpkgtoolsbioschemas.jsonld | 8 +-- data/biocsklearn/biocsklearnbioschemas.jsonld | 2 +- data/biocstyle/biocstylebioschemas.jsonld | 4 +- data/biocviews/biocviewsbioschemas.jsonld | 4 +- data/biocyc/biocycbioschemas.jsonld | 4 +- data/biodataome/biodataomebioschemas.jsonld | 4 +- data/biodist/biodistbioschemas.jsonld | 4 +- .../biodrugscreenbioschemas.jsonld | 4 +- data/biodry/biodrybioschemas.jsonld | 2 +- data/bioecs/bioecsbioschemas.jsonld | 4 +- .../bioexcel_seqqcbioschemas.jsonld | 6 +-- data/bioexplorer/bioexplorerbioschemas.jsonld | 4 +- data/bioextract/bioextractbioschemas.jsonld | 4 +- data/biofvm/biofvmbioschemas.jsonld | 4 +- data/biogateway/biogatewaybioschemas.jsonld | 8 +-- data/biogrid/biogridbioschemas.jsonld | 4 +- .../biogridrunnerbioschemas.jsonld | 2 +- ...ics_docker_images_projectbioschemas.jsonld | 36 ++++++------- data/bioisis/bioisisbioschemas.jsonld | 4 +- .../biojs-alg-seqregionbioschemas.jsonld | 4 +- .../biojs-io-blastbioschemas.jsonld | 2 +- .../biojs-io-clustalbioschemas.jsonld | 4 +- .../biojs-io-fastabioschemas.jsonld | 4 +- .../biojs-io-gffbioschemas.jsonld | 4 +- .../biojs-io-graduatesbioschemas.jsonld | 2 +- .../biojs-io-sambioschemas.jsonld | 4 +- .../biojs-io-snipspectorbioschemas.jsonld | 4 +- .../biojs-meta-parserbioschemas.jsonld | 4 +- .../biojs-rest-ensemblbioschemas.jsonld | 2 +- .../biojs-stat-seqsbioschemas.jsonld | 4 +- .../biojs-vis-chromosomebioschemas.jsonld | 4 +- .../biojs-vis-circularfvbioschemas.jsonld | 4 +- .../biojs-vis-circularnetbioschemas.jsonld | 4 +- .../biojs-vis-easy_featuresbioschemas.jsonld | 4 +- .../biojs-vis-featurebioschemas.jsonld | 4 +- .../biojs-vis-hgvbioschemas.jsonld | 4 +- .../biojs-vis-inchlibbioschemas.jsonld | 4 +- .../biojs-vis-keggviewerbioschemas.jsonld | 4 +- .../biojs-vis-pdbviewerbioschemas.jsonld | 4 +- .../biojs-vis-pmccitationbioschemas.jsonld | 4 +- .../biojs-vis-sambioschemas.jsonld | 4 +- .../biojs-vis-sequencebioschemas.jsonld | 4 +- .../biojs-vis-wigexplorerbioschemas.jsonld | 2 +- data/biojs/biojsbioschemas.jsonld | 4 +- data/biolccc/biolcccbioschemas.jsonld | 4 +- data/biomarker/biomarkerbioschemas.jsonld | 4 +- data/biomart/biomartbioschemas.jsonld | 24 ++++----- .../biomart_centralbioschemas.jsonld | 4 +- data/biomartr/biomartrbioschemas.jsonld | 8 +-- data/biomas/biomasbioschemas.jsonld | 4 +- data/biomercator/biomercatorbioschemas.jsonld | 4 +- .../biomet_toolboxbioschemas.jsonld | 8 +-- data/biomethyl/biomethylbioschemas.jsonld | 4 +- data/biomformat/biomformatbioschemas.jsonld | 2 +- data/biomoby/biomobybioschemas.jsonld | 2 +- ...odels_database_convertersbioschemas.jsonld | 4 +- data/biomvcclass/biomvcclassbioschemas.jsonld | 8 +-- data/biomvrcns/biomvrcnsbioschemas.jsonld | 18 +++---- .../bionanoanalystbioschemas.jsonld | 6 +-- data/bionet/bionetbioschemas.jsonld | 4 +- data/bionetcad/bionetcadbioschemas.jsonld | 4 +- data/bionetfit/bionetfitbioschemas.jsonld | 4 +- data/bionetgen/bionetgenbioschemas.jsonld | 4 +- data/bionimbus/bionimbusbioschemas.jsonld | 4 +- .../bionode-ncbibioschemas.jsonld | 6 +-- data/bionode-sam/bionode-sambioschemas.jsonld | 8 +-- data/bionode/bionodebioschemas.jsonld | 10 ++-- data/bionsi/bionsibioschemas.jsonld | 4 +- data/bionumbers/bionumbersbioschemas.jsonld | 2 +- data/bioparr/bioparrbioschemas.jsonld | 4 +- .../biopartsbuilderbioschemas.jsonld | 4 +- data/bioperl/bioperlbioschemas.jsonld | 2 +- data/biopig/biopigbioschemas.jsonld | 4 +- data/bioplat/bioplatbioschemas.jsonld | 2 +- .../biopredyn-benchbioschemas.jsonld | 2 +- data/bioproject/bioprojectbioschemas.jsonld | 4 +- .../bioprospectorbioschemas.jsonld | 2 +- data/biopython/biopythonbioschemas.jsonld | 4 +- data/bioqc/bioqcbioschemas.jsonld | 4 +- data/bior/biorbioschemas.jsonld | 4 +- ...repository_portal_toolkitbioschemas.jsonld | 6 +-- data/bioruby/biorubybioschemas.jsonld | 4 +- data/biosamples/biosamplesbioschemas.jsonld | 18 +++---- data/biosed/biosedbioschemas.jsonld | 6 +-- data/bioseqclass/bioseqclassbioschemas.jsonld | 8 +-- data/bioservices/bioservicesbioschemas.jsonld | 4 +- data/biosigner/biosignerbioschemas.jsonld | 8 +-- data/biosm/biosmbioschemas.jsonld | 2 +- .../biosmalltalkbioschemas.jsonld | 4 +- data/biosmxpress/biosmxpressbioschemas.jsonld | 4 +- data/biostrings/biostringsbioschemas.jsonld | 8 +-- .../biostructmapbioschemas.jsonld | 12 ++--- data/biosuper/biosuperbioschemas.jsonld | 12 ++--- data/biosvd/biosvdbioschemas.jsonld | 12 ++--- data/biosyntax/biosyntaxbioschemas.jsonld | 2 +- data/biosystems/biosystemsbioschemas.jsonld | 4 +- data/biotapestry/biotapestrybioschemas.jsonld | 4 +- .../biotextquestbioschemas.jsonld | 4 +- data/biotmle/biotmlebioschemas.jsonld | 4 +- .../biotranslatorbioschemas.jsonld | 4 +- data/biouml/bioumlbioschemas.jsonld | 4 +- data/biovenn/biovennbioschemas.jsonld | 2 +- data/biovizbase/biovizbasebioschemas.jsonld | 4 +- data/bioword/biowordbioschemas.jsonld | 4 +- data/bip/bipbioschemas.jsonld | 4 +- data/bip_finder/bip_finderbioschemas.jsonld | 4 +- data/bipad/bipadbioschemas.jsonld | 4 +- data/bips/bipsbioschemas.jsonld | 16 +++--- .../biq_analyzer_himodbioschemas.jsonld | 4 +- .../biq_analyzer_htbioschemas.jsonld | 4 +- data/birewire/birewirebioschemas.jsonld | 4 +- data/birta/birtabioschemas.jsonld | 8 +-- data/birte/birtebioschemas.jsonld | 4 +- data/bis-snp/bis-snpbioschemas.jsonld | 4 +- .../bis2analyzerbioschemas.jsonld | 18 +++---- data/bisa/bisabioschemas.jsonld | 4 +- data/bisc/biscbioschemas.jsonld | 4 +- data/bise/bisebioschemas.jsonld | 40 +++++++-------- data/bisen/bisenbioschemas.jsonld | 4 +- data/biseq/biseqbioschemas.jsonld | 4 +- data/bismark/bismarkbioschemas.jsonld | 4 +- data/bison/bisonbioschemas.jsonld | 4 +- data/bispark/bisparkbioschemas.jsonld | 22 ++++---- data/bissap/bissapbioschemas.jsonld | 4 +- data/bitmapper/bitmapperbioschemas.jsonld | 4 +- data/bitpai/bitpaibioschemas.jsonld | 8 +-- data/bitseq/bitseqbioschemas.jsonld | 12 ++--- .../bitterpredictbioschemas.jsonld | 4 +- data/bittersweet/bittersweetbioschemas.jsonld | 16 +++--- .../blackfan_anemiabioschemas.jsonld | 8 +-- data/blannotator/blannotatorbioschemas.jsonld | 4 +- data/blant/blantbioschemas.jsonld | 4 +- .../blast-filter-toolbioschemas.jsonld | 4 +- data/blast2go/blast2gobioschemas.jsonld | 8 +-- .../blast_api_ebibioschemas.jsonld | 4 +- data/blast_ebi/blast_ebibioschemas.jsonld | 24 ++++----- data/blast_sib/blast_sibbioschemas.jsonld | 2 +- .../blast_viewerbioschemas.jsonld | 4 +- data/blastalign/blastalignbioschemas.jsonld | 4 +- data/blat/blatbioschemas.jsonld | 4 +- data/blima/blimabioschemas.jsonld | 4 +- data/blimp/blimpbioschemas.jsonld | 8 +-- data/blink/blinkbioschemas.jsonld | 20 ++++---- data/blma/blmabioschemas.jsonld | 2 +- data/blocklogo/blocklogobioschemas.jsonld | 4 +- .../blocks_www_serverbioschemas.jsonld | 4 +- data/blossoc/blossocbioschemas.jsonld | 4 +- data/bloutminer/bloutminerbioschemas.jsonld | 2 +- data/blsspeller/blsspellerbioschemas.jsonld | 4 +- data/bm-bc/bm-bcbioschemas.jsonld | 2 +- data/bm-de/bm-debioschemas.jsonld | 4 +- data/bmodeltest/bmodeltestbioschemas.jsonld | 8 +-- data/bmrf-net/bmrf-netbioschemas.jsonld | 4 +- .../bms_standards_registrybioschemas.jsonld | 6 +-- data/bmss/bmssbioschemas.jsonld | 4 +- data/bnbc/bnbcbioschemas.jsonld | 4 +- data/bnbr/bnbrbioschemas.jsonld | 6 +-- data/bo-lstm/bo-lstmbioschemas.jsonld | 18 +++---- data/bobro/bobrobioschemas.jsonld | 4 +- data/boctopus/boctopusbioschemas.jsonld | 4 +- data/bodil/bodilbioschemas.jsonld | 4 +- data/boiler/boilerbioschemas.jsonld | 14 +++--- data/bomp/bompbioschemas.jsonld | 4 +- data/bonb/bonbbioschemas.jsonld | 4 +- data/boogie/boogiebioschemas.jsonld | 4 +- data/booster/boosterbioschemas.jsonld | 4 +- data/bootfam/bootfambioschemas.jsonld | 4 +- .../bottled_saftbioschemas.jsonld | 2 +- data/botxminer/botxminerbioschemas.jsonld | 2 +- data/boutiques/boutiquesbioschemas.jsonld | 2 +- data/bowhead/bowheadbioschemas.jsonld | 4 +- data/bowtie/bowtiebioschemas.jsonld | 14 +++--- data/bowtie2/bowtie2bioschemas.jsonld | 18 +++---- data/boxshade/boxshadebioschemas.jsonld | 4 +- data/bpac/bpacbioschemas.jsonld | 2 +- data/bpbaac/bpbaacbioschemas.jsonld | 2 +- data/bpm/bpmbioschemas.jsonld | 8 +-- data/bpms/bpmsbioschemas.jsonld | 2 +- data/bpositive/bpositivebioschemas.jsonld | 36 ++++++------- data/bpp/bppbioschemas.jsonld | 4 +- data/bprimm/bprimmbioschemas.jsonld | 4 +- data/bprmeth/bprmethbioschemas.jsonld | 2 +- data/bprompt/bpromptbioschemas.jsonld | 4 +- data/bquant/bquantbioschemas.jsonld | 6 +-- data/brain/brainbioschemas.jsonld | 4 +- data/brainbay/brainbaybioschemas.jsonld | 4 +- data/brainscope/brainscopebioschemas.jsonld | 6 +-- data/braintown/braintownbioschemas.jsonld | 4 +- .../branchpointerbioschemas.jsonld | 4 +- data/brapes/brapesbioschemas.jsonld | 2 +- .../brassica_genomebioschemas.jsonld | 4 +- data/brat/bratbioschemas.jsonld | 6 +-- data/braviz/bravizbioschemas.jsonld | 14 +++--- .../brca-diagnosticbioschemas.jsonld | 2 +- data/breakseq/breakseqbioschemas.jsonld | 4 +- data/breakway/breakwaybioschemas.jsonld | 4 +- data/breedb/breedbbioschemas.jsonld | 2 +- data/brenda/brendabioschemas.jsonld | 8 +-- data/breseq/breseqbioschemas.jsonld | 4 +- .../breseq_bam2alnbioschemas.jsonld | 2 +- .../breseq_bam2covbioschemas.jsonld | 2 +- data/bridge/bridgebioschemas.jsonld | 4 +- data/bridgedb/bridgedbbioschemas.jsonld | 12 ++--- .../bridgedb_apibioschemas.jsonld | 2 +- data/bridgedbr/bridgedbrbioschemas.jsonld | 4 +- data/bridger/bridgerbioschemas.jsonld | 12 ++--- data/brie/briebioschemas.jsonld | 4 +- data/brisskit/brisskitbioschemas.jsonld | 26 +++++----- data/brix/brixbioschemas.jsonld | 4 +- data/brm/brmbioschemas.jsonld | 22 ++++---- data/brockman/brockmanbioschemas.jsonld | 8 +-- data/bronco/broncobioschemas.jsonld | 2 +- data/brop/bropbioschemas.jsonld | 4 +- data/browserviz/browservizbioschemas.jsonld | 8 +-- .../browservizdemobioschemas.jsonld | 4 +- data/brs-nonint/brs-nonintbioschemas.jsonld | 4 +- data/bruselas/bruselasbioschemas.jsonld | 8 +-- data/bs-seeker2/bs-seeker2bioschemas.jsonld | 8 +-- data/bsa4yeast/bsa4yeastbioschemas.jsonld | 4 +- data/bsdb/bsdbbioschemas.jsonld | 2 +- data/bsdd/bsddbioschemas.jsonld | 4 +- data/bsf/bsfbioschemas.jsonld | 4 +- data/bsfinder/bsfinderbioschemas.jsonld | 4 +- data/bsgenome/bsgenomebioschemas.jsonld | 4 +- data/bsp-slim/bsp-slimbioschemas.jsonld | 4 +- data/bsrd/bsrdbioschemas.jsonld | 20 ++++---- data/bsseq/bsseqbioschemas.jsonld | 20 ++++---- data/bstools/bstoolsbioschemas.jsonld | 4 +- data/bto/btobioschemas.jsonld | 4 +- data/btod_blast/btod_blastbioschemas.jsonld | 4 +- data/btssfinder/btssfinderbioschemas.jsonld | 8 +-- data/btw/btwbioschemas.jsonld | 4 +- data/btwisted/btwistedbioschemas.jsonld | 16 +++--- data/bubastis/bubastisbioschemas.jsonld | 2 +- data/bubble_gum/bubble_gumbioschemas.jsonld | 2 +- data/bubbleparse/bubbleparsebioschemas.jsonld | 4 +- data/bubbletree/bubbletreebioschemas.jsonld | 4 +- data/buccaneer/buccaneerbioschemas.jsonld | 4 +- data/buddysuite/buddysuitebioschemas.jsonld | 18 +++---- data/bufet/bufetbioschemas.jsonld | 10 ++-- .../bufferedmatrixbioschemas.jsonld | 4 +- data/bugasbase/bugasbasebioschemas.jsonld | 4 +- .../bujnicki_lab_toolsbioschemas.jsonld | 4 +- data/bumhmm/bumhmmbioschemas.jsonld | 4 +- data/bumphunter/bumphunterbioschemas.jsonld | 18 +++---- data/burrito/burritobioschemas.jsonld | 4 +- data/bus/busbioschemas.jsonld | 2 +- data/busca/buscabioschemas.jsonld | 4 +- data/bustools/bustoolsbioschemas.jsonld | 8 +-- data/bwa-sw/bwa-swbioschemas.jsonld | 32 ++++++------ data/bwa/bwabioschemas.jsonld | 36 ++++++------- data/bx-python/bx-pythonbioschemas.jsonld | 4 +- data/bykdb/bykdbbioschemas.jsonld | 4 +- data/bypassr/bypassrbioschemas.jsonld | 2 +- data/bystro/bystrobioschemas.jsonld | 4 +- data/bz-rates/bz-ratesbioschemas.jsonld | 4 +- data/bzscan/bzscanbioschemas.jsonld | 4 +- .../c-intersecturebioschemas.jsonld | 4 +- data/c-state/c-statebioschemas.jsonld | 8 +-- data/cabernet/cabernetbioschemas.jsonld | 4 +- data/cabog/cabogbioschemas.jsonld | 4 +- data/cabri/cabribioschemas.jsonld | 14 +++--- data/cabs-flex/cabs-flexbioschemas.jsonld | 4 +- data/cabs-fold/cabs-foldbioschemas.jsonld | 2 +- data/cachedas/cachedasbioschemas.jsonld | 12 ++--- .../cachedbfetchbioschemas.jsonld | 10 ++-- .../cacheebeyesearchbioschemas.jsonld | 12 ++--- .../cacheensemblbioschemas.jsonld | 12 ++--- data/cad-score/cad-scorebioschemas.jsonld | 8 +-- data/cadd_phred/cadd_phredbioschemas.jsonld | 10 ++-- data/cadgene/cadgenebioschemas.jsonld | 4 +- data/cadnano/cadnanobioschemas.jsonld | 4 +- data/cafa/cafabioschemas.jsonld | 4 +- ...alculation_of_free_energybioschemas.jsonld | 4 +- .../cafe_sequence_analysisbioschemas.jsonld | 18 +++---- .../cafe_variomebioschemas.jsonld | 4 +- data/cager/cagerbioschemas.jsonld | 10 ++-- data/cagexplorer/cagexplorerbioschemas.jsonld | 4 +- data/cai/caibioschemas.jsonld | 12 ++--- data/cake/cakebioschemas.jsonld | 4 +- data/calchas/calchasbioschemas.jsonld | 18 +++---- data/calib/calibbioschemas.jsonld | 4 +- data/calis-p/calis-pbioschemas.jsonld | 14 +++--- data/calmate/calmatebioschemas.jsonld | 2 +- data/calmorph/calmorphbioschemas.jsonld | 4 +- data/cam/cambioschemas.jsonld | 4 +- data/camels/camelsbioschemas.jsonld | 4 +- data/cameo/cameobioschemas.jsonld | 4 +- data/camera/camerabioschemas.jsonld | 20 ++++---- data/camp/campbioschemas.jsonld | 4 +- data/campo/campobioschemas.jsonld | 4 +- data/camur/camurbioschemas.jsonld | 4 +- data/canary/canarybioschemas.jsonld | 4 +- data/cancer/cancerbioschemas.jsonld | 8 +-- data/cancera1de/cancera1debioschemas.jsonld | 6 +-- data/cancerclass/cancerclassbioschemas.jsonld | 4 +- .../cancerinsilicobioschemas.jsonld | 8 +-- data/cancermine/cancerminebioschemas.jsonld | 4 +- .../cancermutationanalysisbioschemas.jsonld | 4 +- .../cancerouspdomainsbioschemas.jsonld | 4 +- data/cancerppd/cancerppdbioschemas.jsonld | 16 +++--- data/cancerpred/cancerpredbioschemas.jsonld | 4 +- .../cancerresourcebioschemas.jsonld | 4 +- data/cand/candbioschemas.jsonld | 8 +-- data/candi/candibioschemas.jsonld | 12 ++--- data/caneapp/caneappbioschemas.jsonld | 14 +++--- data/canevolve/canevolvebioschemas.jsonld | 14 +++--- data/cansar/cansarbioschemas.jsonld | 4 +- data/cansnper/cansnperbioschemas.jsonld | 4 +- data/canvar/canvarbioschemas.jsonld | 20 ++++---- data/caomicsv/caomicsvbioschemas.jsonld | 4 +- data/cap3/cap3bioschemas.jsonld | 4 +- data/capdsd/capdsdbioschemas.jsonld | 4 +- data/cape/capebioschemas.jsonld | 16 +++--- data/capiu/capiubioschemas.jsonld | 4 +- data/car/carbioschemas.jsonld | 14 +++--- .../carboxylatorbioschemas.jsonld | 4 +- .../cardiacprofilerbioschemas.jsonld | 14 +++--- data/cardinal/cardinalbioschemas.jsonld | 10 ++-- data/cardiofan/cardiofanbioschemas.jsonld | 2 +- data/cargo/cargobioschemas.jsonld | 4 +- data/carmaweb/carmawebbioschemas.jsonld | 4 +- data/carna/carnabioschemas.jsonld | 36 ++++++------- data/carnac/carnacbioschemas.jsonld | 2 +- data/carrie/carriebioschemas.jsonld | 4 +- data/carrot/carrotbioschemas.jsonld | 4 +- data/cartaj/cartajbioschemas.jsonld | 8 +-- data/carthagene/carthagenebioschemas.jsonld | 4 +- .../cartogratreebioschemas.jsonld | 4 +- .../cas-analyzerbioschemas.jsonld | 2 +- .../cas-designerbioschemas.jsonld | 4 +- data/cas/casbioschemas.jsonld | 4 +- .../cas_image_analysisbioschemas.jsonld | 16 +++--- data/cascade/cascadebioschemas.jsonld | 4 +- .../cascade_visualizationbioschemas.jsonld | 12 ++--- data/casian/casianbioschemas.jsonld | 4 +- data/casnp/casnpbioschemas.jsonld | 4 +- data/casper/casperbioschemas.jsonld | 12 ++--- data/cassis/cassisbioschemas.jsonld | 4 +- data/cassys/cassysbioschemas.jsonld | 4 +- data/castp/castpbioschemas.jsonld | 4 +- .../catalysis_hubbioschemas.jsonld | 22 ++++---- data/catalyst/catalystbioschemas.jsonld | 2 +- ...lytic_site_identificationbioschemas.jsonld | 4 +- data/catana/catanabioschemas.jsonld | 4 +- data/catch/catchbioschemas.jsonld | 4 +- data/catdb/catdbbioschemas.jsonld | 12 ++--- data/category/categorybioschemas.jsonld | 4 +- .../categorycomparebioschemas.jsonld | 20 ++++---- data/cath/cathbioschemas.jsonld | 2 +- data/cato/catobioschemas.jsonld | 10 ++-- data/catrapid/catrapidbioschemas.jsonld | 4 +- data/cats/catsbioschemas.jsonld | 8 +-- data/causalr/causalrbioschemas.jsonld | 4 +- data/causaltrail/causaltrailbioschemas.jsonld | 18 +++---- data/caver/caverbioschemas.jsonld | 22 ++++---- .../caver_analystbioschemas.jsonld | 26 +++++----- .../caver_pymol_pluginbioschemas.jsonld | 22 ++++---- data/caver_web/caver_webbioschemas.jsonld | 8 +-- data/caverdock/caverdockbioschemas.jsonld | 12 ++--- data/caw/cawbioschemas.jsonld | 12 ++--- data/cazy/cazybioschemas.jsonld | 18 +++---- data/cbaf/cbafbioschemas.jsonld | 4 +- data/cbarbel/cbarbelbioschemas.jsonld | 4 +- data/cbcanalyzer/cbcanalyzerbioschemas.jsonld | 4 +- data/cbgt/cbgtbioschemas.jsonld | 16 +++--- data/cbo/cbobioschemas.jsonld | 4 +- .../cbs_das_protein_viewerbioschemas.jsonld | 2 +- data/cbspredict/cbspredictbioschemas.jsonld | 2 +- data/ccancer/ccancerbioschemas.jsonld | 4 +- data/ccap/ccapbioschemas.jsonld | 4 +- data/ccb/ccbbioschemas.jsonld | 4 +- data/cccpp/cccppbioschemas.jsonld | 4 +- data/ccfold/ccfoldbioschemas.jsonld | 6 +-- data/ccharppi/ccharppibioschemas.jsonld | 10 ++-- data/cchmmprof/cchmmprofbioschemas.jsonld | 2 +- data/cclasso/cclassobioschemas.jsonld | 4 +- data/ccle_gdsc/ccle_gdscbioschemas.jsonld | 8 +-- data/ccmap/ccmapbioschemas.jsonld | 8 +-- data/ccmetagen/ccmetagenbioschemas.jsonld | 4 +- data/ccp4/ccp4bioschemas.jsonld | 4 +- data/ccp4_wiki/ccp4_wikibioschemas.jsonld | 4 +- data/ccp4mg/ccp4mgbioschemas.jsonld | 4 +- data/ccpdb/ccpdbbioschemas.jsonld | 2 +- data/ccpn/ccpnbioschemas.jsonld | 4 +- data/ccpromise/ccpromisebioschemas.jsonld | 2 +- data/ccrel/ccrelbioschemas.jsonld | 4 +- data/ccrepe/ccrepebioschemas.jsonld | 10 ++-- data/ccrxp/ccrxpbioschemas.jsonld | 4 +- data/cct/cctbioschemas.jsonld | 2 +- data/cctop/cctopbioschemas.jsonld | 6 +-- data/cd-hit/cd-hitbioschemas.jsonld | 4 +- data/cd-search/cd-searchbioschemas.jsonld | 4 +- data/cdd/cddbioschemas.jsonld | 24 ++++----- data/cddapp/cddappbioschemas.jsonld | 4 +- data/cddb/cddbbioschemas.jsonld | 2 +- data/cde/cdebioschemas.jsonld | 4 +- data/cdfread/cdfreadbioschemas.jsonld | 4 +- data/cdh/cdhbioschemas.jsonld | 2 +- data/cdk/cdkbioschemas.jsonld | 8 +-- data/cdna/cdnabioschemas.jsonld | 4 +- data/cdrom/cdrombioschemas.jsonld | 10 ++-- data/cdsbank/cdsbankbioschemas.jsonld | 8 +-- data/ceas/ceasbioschemas.jsonld | 4 +- .../cedar_ondemandbioschemas.jsonld | 4 +- data/cega/cegabioschemas.jsonld | 4 +- .../cell-motilitybioschemas.jsonld | 6 +-- data/cellbase/cellbasebioschemas.jsonld | 4 +- data/cellbaser/cellbaserbioschemas.jsonld | 4 +- data/cellcycledb/cellcycledbbioschemas.jsonld | 4 +- data/cellgrowth/cellgrowthbioschemas.jsonld | 8 +-- data/cellhts2/cellhts2bioschemas.jsonld | 20 ++++---- .../cellimagelibrarybioschemas.jsonld | 4 +- data/cellity/cellitybioschemas.jsonld | 8 +-- data/cellmapper/cellmapperbioschemas.jsonld | 18 +++---- .../cellminercdbbioschemas.jsonld | 10 ++-- data/cellmissy/cellmissybioschemas.jsonld | 4 +- data/cellmix/cellmixbioschemas.jsonld | 4 +- .../cellnetanalyzerbioschemas.jsonld | 20 ++++---- data/cellnetvis/cellnetvisbioschemas.jsonld | 4 +- data/cellnoptr/cellnoptrbioschemas.jsonld | 4 +- data/cellpack/cellpackbioschemas.jsonld | 10 ++-- data/cellpd/cellpdbioschemas.jsonld | 2 +- data/cellsim/cellsimbioschemas.jsonld | 4 +- data/cellsort/cellsortbioschemas.jsonld | 4 +- data/celltag/celltagbioschemas.jsonld | 12 ++--- data/celltracer/celltracerbioschemas.jsonld | 4 +- data/celltrans/celltransbioschemas.jsonld | 4 +- data/celltree/celltreebioschemas.jsonld | 20 ++++---- data/cellxpress/cellxpressbioschemas.jsonld | 16 +++--- data/censor/censorbioschemas.jsonld | 4 +- .../census_travelbioschemas.jsonld | 12 ++--- data/centdist/centdistbioschemas.jsonld | 2 +- data/centiscape/centiscapebioschemas.jsonld | 16 +++--- data/centiserver/centiserverbioschemas.jsonld | 6 +-- data/centomd/centomdbioschemas.jsonld | 10 ++-- .../centroidfoldbioschemas.jsonld | 2 +- .../centroidhomfold-lastbioschemas.jsonld | 4 +- .../centrosomedbbioschemas.jsonld | 2 +- data/cepa/cepabioschemas.jsonld | 4 +- data/cerebro/cerebrobioschemas.jsonld | 4 +- data/cerebroviz/cerebrovizbioschemas.jsonld | 4 +- data/cerena/cerenabioschemas.jsonld | 8 +-- data/cerenkov2/cerenkov2bioschemas.jsonld | 8 +-- data/cermit/cermitbioschemas.jsonld | 4 +- data/cesam/cesambioschemas.jsonld | 14 +++--- .../ceu_mass_mediatorbioschemas.jsonld | 4 +- data/cexor/cexorbioschemas.jsonld | 2 +- data/cfassay/cfassaybioschemas.jsonld | 8 +-- data/cfinder/cfinderbioschemas.jsonld | 4 +- data/cfm-id/cfm-idbioschemas.jsonld | 4 +- .../cfquant-automaticbioschemas.jsonld | 16 +++--- data/cg-cat/cg-catbioschemas.jsonld | 6 +-- data/cgap/cgapbioschemas.jsonld | 2 +- data/cgbayesnets/cgbayesnetsbioschemas.jsonld | 16 +++--- data/cgd/cgdbioschemas.jsonld | 4 +- data/cgen/cgenbioschemas.jsonld | 4 +- data/cghbase/cghbasebioschemas.jsonld | 4 +- data/cghcall/cghcallbioschemas.jsonld | 8 +-- data/cghmcr/cghmcrbioschemas.jsonld | 4 +- .../cghnormaliterbioschemas.jsonld | 4 +- data/cghra/cghrabioschemas.jsonld | 8 +-- data/cghregions/cghregionsbioschemas.jsonld | 4 +- data/cgmanalysis/cgmanalysisbioschemas.jsonld | 4 +- data/cgqtl/cgqtlbioschemas.jsonld | 6 +-- data/cgrnb/cgrnbbioschemas.jsonld | 16 +++--- data/cgrtools/cgrtoolsbioschemas.jsonld | 8 +-- data/cgview/cgviewbioschemas.jsonld | 2 +- data/chainy/chainybioschemas.jsonld | 4 +- data/champ/champbioschemas.jsonld | 14 +++--- .../changegfffeaturesbioschemas.jsonld | 4 +- data/changename/changenamebioschemas.jsonld | 4 +- .../changetagnamebioschemas.jsonld | 2 +- data/channelsdb/channelsdbbioschemas.jsonld | 12 ++--- data/chaos/chaosbioschemas.jsonld | 8 +-- .../chaos_dialignbioschemas.jsonld | 4 +- ...teristic_direction_methodbioschemas.jsonld | 12 ++--- data/charge/chargebioschemas.jsonld | 12 ++--- .../charge_bioconductorbioschemas.jsonld | 4 +- data/charm/charmbioschemas.jsonld | 10 ++-- data/charprotdb/charprotdbbioschemas.jsonld | 4 +- ..._analysis_and_explorationbioschemas.jsonld | 2 +- data/chat/chatbioschemas.jsonld | 8 +-- data/chea3/chea3bioschemas.jsonld | 20 ++++---- data/chebi/chebibioschemas.jsonld | 4 +- data/chebi_ws/chebi_wsbioschemas.jsonld | 4 +- .../checkmyindexbioschemas.jsonld | 2 +- data/checktrans/checktransbioschemas.jsonld | 10 ++-- data/chembl/chemblbioschemas.jsonld | 16 +++--- ..._biologicals_blast_searchbioschemas.jsonld | 4 +- ...ntd_small_molecule_searchbioschemas.jsonld | 2 +- ...mbl_small_molecule_searchbioschemas.jsonld | 4 +- .../chemdis-mixturebioschemas.jsonld | 4 +- data/chemgps-np/chemgps-npbioschemas.jsonld | 6 +-- data/chemhits/chemhitsbioschemas.jsonld | 4 +- ...mical_identifier_resolverbioschemas.jsonld | 4 +- data/chemmaps/chemmapsbioschemas.jsonld | 4 +- .../chemmine_toolsbioschemas.jsonld | 4 +- data/chemmineob/chemmineobbioschemas.jsonld | 4 +- data/chemminer/chemminerbioschemas.jsonld | 38 +++++++------- .../chemotion_elnbioschemas.jsonld | 4 +- data/chemprot/chemprotbioschemas.jsonld | 12 ++--- data/chemsar/chemsarbioschemas.jsonld | 4 +- data/chemspider/chemspiderbioschemas.jsonld | 4 +- data/chemsuite/chemsuitebioschemas.jsonld | 2 +- data/cheripic/cheripicbioschemas.jsonld | 8 +-- data/chia-pet2/chia-pet2bioschemas.jsonld | 16 +++--- data/chicago/chicagobioschemas.jsonld | 20 ++++---- data/chickspress/chickspressbioschemas.jsonld | 4 +- data/chicmaxima/chicmaximabioschemas.jsonld | 26 +++++----- data/chicp/chicpbioschemas.jsonld | 4 +- data/chilibot/chilibotbioschemas.jsonld | 4 +- data/chilin/chilinbioschemas.jsonld | 8 +-- data/chimera/chimerabioschemas.jsonld | 4 +- .../chimera_fusionbioschemas.jsonld | 4 +- data/chimeraviz/chimeravizbioschemas.jsonld | 4 +- data/chimerdb/chimerdbbioschemas.jsonld | 4 +- data/chinook/chinookbioschemas.jsonld | 4 +- data/chip-array/chip-arraybioschemas.jsonld | 4 +- .../chipanalyserbioschemas.jsonld | 4 +- .../chipchipnormbioschemas.jsonld | 4 +- data/chipcomp/chipcompbioschemas.jsonld | 14 +++--- data/chipenrich/chipenrichbioschemas.jsonld | 22 ++++---- data/chipexoqual/chipexoqualbioschemas.jsonld | 4 +- data/chipmeta/chipmetabioschemas.jsonld | 4 +- data/chipmunk/chipmunkbioschemas.jsonld | 4 +- .../chippeakannobioschemas.jsonld | 8 +-- data/chipqc/chipqcbioschemas.jsonld | 28 +++++------ data/chips/chipsbioschemas.jsonld | 18 +++---- data/chipseeker/chipseekerbioschemas.jsonld | 12 ++--- data/chipseq/chipseqbioschemas.jsonld | 4 +- data/chipseqr/chipseqrbioschemas.jsonld | 20 ++++---- .../chipseqspikebioschemas.jsonld | 2 +- data/chipsim/chipsimbioschemas.jsonld | 4 +- data/chipster/chipsterbioschemas.jsonld | 8 +-- .../chipsummitdbbioschemas.jsonld | 4 +- data/chipulate/chipulatebioschemas.jsonld | 10 ++-- data/chipwig/chipwigbioschemas.jsonld | 4 +- data/chipxpress/chipxpressbioschemas.jsonld | 4 +- data/chiron/chironbioschemas.jsonld | 4 +- data/chlorop/chloropbioschemas.jsonld | 4 +- data/chngpt/chngptbioschemas.jsonld | 16 +++--- data/chopchop/chopchopbioschemas.jsonld | 2 +- data/chopstitch/chopstitchbioschemas.jsonld | 4 +- data/chpredict/chpredictbioschemas.jsonld | 2 +- data/chrogps/chrogpsbioschemas.jsonld | 6 +-- data/chromagnon/chromagnonbioschemas.jsonld | 16 +++--- .../chromcontactbioschemas.jsonld | 4 +- data/chromdraw/chromdrawbioschemas.jsonld | 12 ++--- .../chromheatmapbioschemas.jsonld | 4 +- data/chromhmm/chromhmmbioschemas.jsonld | 4 +- .../chromopainterbioschemas.jsonld | 24 ++++----- data/chromoviz/chromovizbioschemas.jsonld | 4 +- data/chromplot/chromplotbioschemas.jsonld | 6 +-- data/chromstar/chromstarbioschemas.jsonld | 8 +-- data/chromswitch/chromswitchbioschemas.jsonld | 4 +- data/chromvar/chromvarbioschemas.jsonld | 16 +++--- .../chronic_vs_clinicbioschemas.jsonld | 4 +- data/chronos/chronosbioschemas.jsonld | 8 +-- data/chsalign/chsalignbioschemas.jsonld | 16 +++--- data/cibex/cibexbioschemas.jsonld | 4 +- data/cidane/cidanebioschemas.jsonld | 18 +++---- data/cidd/ciddbioschemas.jsonld | 10 ++-- data/cif/cifbioschemas.jsonld | 4 +- data/ciliacarta/ciliacartabioschemas.jsonld | 22 ++++---- data/cimbinator/cimbinatorbioschemas.jsonld | 4 +- data/cindex/cindexbioschemas.jsonld | 8 +-- data/cinna/cinnabioschemas.jsonld | 2 +- data/cipher/cipherbioschemas.jsonld | 4 +- data/cipres/cipresbioschemas.jsonld | 8 +-- data/circbase/circbasebioschemas.jsonld | 2 +- .../circexplorer2bioschemas.jsonld | 4 +- data/circfunbase/circfunbasebioschemas.jsonld | 28 +++++------ data/circos/circosbioschemas.jsonld | 4 +- data/circpro/circprobioschemas.jsonld | 4 +- data/circrnawrap/circrnawrapbioschemas.jsonld | 4 +- data/circtools/circtoolsbioschemas.jsonld | 4 +- .../circularlogobioschemas.jsonld | 22 ++++---- data/cirdna/cirdnabioschemas.jsonld | 16 +++--- data/cirgo/cirgobioschemas.jsonld | 22 ++++---- data/ciri-full/ciri-fullbioschemas.jsonld | 16 +++--- data/cisgenome/cisgenomebioschemas.jsonld | 8 +-- data/cisminer/cisminerbioschemas.jsonld | 18 +++---- data/cismols/cismolsbioschemas.jsonld | 4 +- data/cispath/cispathbioschemas.jsonld | 8 +-- data/cisred/cisredbioschemas.jsonld | 2 +- data/cisregtest/cisregtestbioschemas.jsonld | 4 +- data/cistrome-go/cistrome-gobioschemas.jsonld | 28 +++++------ data/cistrome/cistromebioschemas.jsonld | 4 +- data/cit/citbioschemas.jsonld | 16 +++--- .../cite-seq-countbioschemas.jsonld | 4 +- data/citexplore/citexplorebioschemas.jsonld | 4 +- data/cladepp/cladeppbioschemas.jsonld | 4 +- data/clantox/clantoxbioschemas.jsonld | 4 +- data/clap/clapbioschemas.jsonld | 12 ++--- data/clark/clarkbioschemas.jsonld | 4 +- .../classification_noisebioschemas.jsonld | 6 +-- data/classifyme/classifymebioschemas.jsonld | 4 +- data/classifyr/classifyrbioschemas.jsonld | 8 +-- data/clastr/clastrbioschemas.jsonld | 8 +-- .../clc_cas_to_sambioschemas.jsonld | 2 +- .../clc_extract_consensusbioschemas.jsonld | 4 +- .../clc_find_variationsbioschemas.jsonld | 4 +- ..._variations_tab_convertorbioschemas.jsonld | 4 +- data/clc_mapper/clc_mapperbioschemas.jsonld | 2 +- .../clc_mapper_legacybioschemas.jsonld | 4 +- .../clc_mapping_infobioschemas.jsonld | 4 +- .../clc_sequence_infobioschemas.jsonld | 4 +- .../clc_unmapped_readsbioschemas.jsonld | 2 +- data/cld/cldbioschemas.jsonld | 4 +- data/clean/cleanbioschemas.jsonld | 4 +- data/clean_ngs/clean_ngsbioschemas.jsonld | 4 +- data/cleaner/cleanerbioschemas.jsonld | 4 +- data/cleanex/cleanexbioschemas.jsonld | 4 +- .../cleantranscriptfilebioschemas.jsonld | 4 +- .../cleanupdtseqbioschemas.jsonld | 8 +-- data/cleaver/cleaverbioschemas.jsonld | 8 +-- .../cleavpredictbioschemas.jsonld | 4 +- data/clic/clicbioschemas.jsonld | 4 +- .../clic_pathwaybioschemas.jsonld | 12 ++--- data/click2drug/click2drugbioschemas.jsonld | 4 +- data/clima/climabioschemas.jsonld | 2 +- data/clima_2/clima_2bioschemas.jsonld | 22 ++++---- ..._pathogenicity_calculatorbioschemas.jsonld | 10 ++-- .../clinical_ngs_dbbioschemas.jsonld | 8 +-- .../clinicallaboratorybioschemas.jsonld | 8 +-- .../clinomicstrailbcbioschemas.jsonld | 8 +-- data/clinpred/clinpredbioschemas.jsonld | 14 +++--- data/clinqc/clinqcbioschemas.jsonld | 16 +++--- data/clintad/clintadbioschemas.jsonld | 4 +- data/clinvar/clinvarbioschemas.jsonld | 24 ++++----- data/clip/clipbioschemas.jsonld | 4 +- .../clip_chlamydomonasbioschemas.jsonld | 12 ++--- data/clippda/clippdabioschemas.jsonld | 8 +-- data/clipper/clipperbioschemas.jsonld | 2 +- data/clipz/clipzbioschemas.jsonld | 4 +- data/clomial/clomialbioschemas.jsonld | 12 ++--- data/clonality/clonalitybioschemas.jsonld | 4 +- .../clonaloriginbioschemas.jsonld | 4 +- .../clone_mapperbioschemas.jsonld | 4 +- data/clonocalc/clonocalcbioschemas.jsonld | 14 +++--- data/cloudburst/cloudburstbioschemas.jsonld | 4 +- data/clst/clstbioschemas.jsonld | 2 +- data/clstutils/clstutilsbioschemas.jsonld | 4 +- data/clumpak/clumpakbioschemas.jsonld | 4 +- data/clumsid/clumsidbioschemas.jsonld | 4 +- data/cluspro/clusprobioschemas.jsonld | 4 +- data/clustage/clustagebioschemas.jsonld | 10 ++-- data/clustal2/clustal2bioschemas.jsonld | 4 +- .../clustal_ws_jabawsbioschemas.jsonld | 4 +- data/clustalo/clustalobioschemas.jsonld | 8 +-- .../clustalo_ebibioschemas.jsonld | 8 +-- .../clustalo_uniprotbioschemas.jsonld | 4 +- .../clustalo_ws_jabawsbioschemas.jsonld | 4 +- data/clustalw/clustalwbioschemas.jsonld | 8 +-- .../clustalw2_ebibioschemas.jsonld | 8 +-- ...ustalw2_phylogeny_api_ebibioschemas.jsonld | 2 +- .../clustalw2_phylogeny_ebibioschemas.jsonld | 4 +- .../clustalw_pbilbioschemas.jsonld | 4 +- .../clustalw_sibbioschemas.jsonld | 2 +- data/clustcomp/clustcompbioschemas.jsonld | 4 +- .../cluster_busterbioschemas.jsonld | 4 +- .../clusterbootstrapbioschemas.jsonld | 4 +- .../clusterexperimentbioschemas.jsonld | 4 +- data/clusterflow/clusterflowbioschemas.jsonld | 4 +- .../clustergrammerbioschemas.jsonld | 4 +- .../clusterjudgebioschemas.jsonld | 4 +- data/clustermq/clustermqbioschemas.jsonld | 4 +- .../clusterprofilerbioschemas.jsonld | 36 ++++++------- data/clusterscan/clusterscanbioschemas.jsonld | 4 +- data/clusterseq/clusterseqbioschemas.jsonld | 4 +- .../clustersignificancebioschemas.jsonld | 4 +- data/clusterstab/clusterstabbioschemas.jsonld | 4 +- data/clusterv/clustervbioschemas.jsonld | 4 +- data/clusteval/clustevalbioschemas.jsonld | 8 +-- .../clustom-cloudbioschemas.jsonld | 8 +-- data/cma/cmabioschemas.jsonld | 4 +- data/cmc/cmcbioschemas.jsonld | 4 +- data/cmcompare/cmcomparebioschemas.jsonld | 2 +- data/cmfsm/cmfsmbioschemas.jsonld | 4 +- data/cmpi/cmpibioschemas.jsonld | 4 +- data/cmscaller/cmscallerbioschemas.jsonld | 4 +- data/cmweb/cmwebbioschemas.jsonld | 4 +- data/cn3d/cn3dbioschemas.jsonld | 4 +- data/cnanalysis/cnanalysisbioschemas.jsonld | 4 +- data/cnanorm/cnanormbioschemas.jsonld | 8 +-- data/cnanova/cnanovabioschemas.jsonld | 4 +- data/cnaseg/cnasegbioschemas.jsonld | 2 +- data/cnatra/cnatrabioschemas.jsonld | 4 +- data/cner/cnerbioschemas.jsonld | 4 +- data/cnet/cnetbioschemas.jsonld | 4 +- data/cnmtf/cnmtfbioschemas.jsonld | 4 +- data/cnnh_pss/cnnh_pssbioschemas.jsonld | 4 +- data/cnogpro/cnogprobioschemas.jsonld | 4 +- data/cnordt/cnordtbioschemas.jsonld | 2 +- data/cnorode/cnorodebioschemas.jsonld | 4 +- data/cnpbayes/cnpbayesbioschemas.jsonld | 4 +- data/cnssolve/cnssolvebioschemas.jsonld | 4 +- data/cntools/cntoolsbioschemas.jsonld | 4 +- data/cnvhap/cnvhapbioschemas.jsonld | 4 +- data/cnvoffseq/cnvoffseqbioschemas.jsonld | 16 +++--- .../cnvpanelizerbioschemas.jsonld | 4 +- data/cnvrd2/cnvrd2bioschemas.jsonld | 4 +- data/cnvtools/cnvtoolsbioschemas.jsonld | 4 +- data/coac/coacbioschemas.jsonld | 16 +++--- data/coannealing/coannealingbioschemas.jsonld | 4 +- .../cobra_toolboxbioschemas.jsonld | 4 +- data/cobrapy/cobrapybioschemas.jsonld | 4 +- data/cocas/cocasbioschemas.jsonld | 4 +- data/cocitestats/cocitestatsbioschemas.jsonld | 8 +-- data/coco/cocobioschemas.jsonld | 4 +- data/cocomaps/cocomapsbioschemas.jsonld | 12 ++--- data/codabc/codabcbioschemas.jsonld | 6 +-- data/codatags/codatagsbioschemas.jsonld | 4 +- data/codcmp/codcmpbioschemas.jsonld | 12 ++--- data/codcopy/codcopybioschemas.jsonld | 16 +++--- data/codehop/codehopbioschemas.jsonld | 4 +- data/codelink/codelinkbioschemas.jsonld | 4 +- data/coderet/coderetbioschemas.jsonld | 16 +++--- data/codex/codexbioschemas.jsonld | 4 +- data/codex_ngs/codex_ngsbioschemas.jsonld | 18 +++---- .../codon_congruencebioschemas.jsonld | 4 +- .../codon_usage_databasebioschemas.jsonld | 4 +- data/codono/codonobioschemas.jsonld | 4 +- data/codonome/codonomebioschemas.jsonld | 4 +- data/codp/codpbioschemas.jsonld | 4 +- data/coeus/coeusbioschemas.jsonld | 8 +-- data/coev-web/coev-webbioschemas.jsonld | 4 +- data/coexnet/coexnetbioschemas.jsonld | 4 +- data/coexpnetviz/coexpnetvizbioschemas.jsonld | 8 +-- data/coexpresso/coexpressobioschemas.jsonld | 4 +- data/cofactor/cofactorbioschemas.jsonld | 4 +- data/cogaps/cogapsbioschemas.jsonld | 2 +- data/cogeme/cogemebioschemas.jsonld | 4 +- data/cogena/cogenabioschemas.jsonld | 4 +- data/cognac/cognacbioschemas.jsonld | 4 +- data/cogps/cogpsbioschemas.jsonld | 4 +- data/cogrim/cogrimbioschemas.jsonld | 12 ++--- data/cohcap/cohcapbioschemas.jsonld | 12 ++--- data/cohorts/cohortsbioschemas.jsonld | 2 +- data/colib_read/colib_readbioschemas.jsonld | 4 +- data/collabonet/collabonetbioschemas.jsonld | 14 +++--- data/collapsabel/collapsabelbioschemas.jsonld | 4 +- .../collapsereadsbioschemas.jsonld | 2 +- data/collect_mgf/collect_mgfbioschemas.jsonld | 4 +- data/collector/collectorbioschemas.jsonld | 4 +- data/colocr/colocrbioschemas.jsonld | 10 ++-- data/colombo/colombobioschemas.jsonld | 2 +- data/colombos/colombosbioschemas.jsonld | 4 +- .../colonysizedistributionsbioschemas.jsonld | 4 +- data/colorado-3d/colorado-3dbioschemas.jsonld | 4 +- .../colordistancebioschemas.jsonld | 14 +++--- data/colorgff/colorgffbioschemas.jsonld | 4 +- data/coloweb/colowebbioschemas.jsonld | 10 ++-- data/coma/comabioschemas.jsonld | 2 +- data/coman/comanbioschemas.jsonld | 14 +++--- data/combenefit/combenefitbioschemas.jsonld | 4 +- data/combfunc/combfuncbioschemas.jsonld | 4 +- data/combigor/combigorbioschemas.jsonld | 4 +- data/combiroc/combirocbioschemas.jsonld | 4 +- data/come/comebioschemas.jsonld | 4 +- .../comet-universebioschemas.jsonld | 2 +- data/comet/cometbioschemas.jsonld | 8 +-- .../comet_visualisationbioschemas.jsonld | 16 +++--- data/cometa/cometabioschemas.jsonld | 14 +++--- data/cometgene/cometgenebioschemas.jsonld | 4 +- data/comir/comirbioschemas.jsonld | 4 +- data/comm-s/comm-sbioschemas.jsonld | 4 +- data/comma/commabioschemas.jsonld | 24 ++++----- data/command/commandbioschemas.jsonld | 18 +++---- data/comorbidity/comorbiditybioschemas.jsonld | 4 +- .../comorbidity4jbioschemas.jsonld | 2 +- ...from_tomato_and_grapevinebioschemas.jsonld | 4 +- .../compare_taxofilebioschemas.jsonld | 4 +- .../compare_two_listsbioschemas.jsonld | 8 +-- data/comparems2/comparems2bioschemas.jsonld | 8 +-- .../compareoverlappingbioschemas.jsonld | 4 +- ...pareoverlappingsmallquerybioschemas.jsonld | 4 +- .../compartmentsbioschemas.jsonld | 22 ++++---- data/compass/compassbioschemas.jsonld | 4 +- data/compass_sim/compass_simbioschemas.jsonld | 4 +- data/compcoder/compcoderbioschemas.jsonld | 4 +- .../compendiumdbbioschemas.jsonld | 2 +- .../compepitoolsbioschemas.jsonld | 4 +- data/compgo/compgobioschemas.jsonld | 8 +-- .../complex_portalbioschemas.jsonld | 6 +-- .../complexbrowserbioschemas.jsonld | 4 +- .../complexchangebioschemas.jsonld | 4 +- .../complexheatmapbioschemas.jsonld | 4 +- data/compmerge/compmergebioschemas.jsonld | 4 +- data/compo/compobioschemas.jsonld | 4 +- .../compomics-roverbioschemas.jsonld | 4 +- .../compomics-sigpepbioschemas.jsonld | 4 +- .../compomics-utilitiesbioschemas.jsonld | 14 +++--- .../compositedriverbioschemas.jsonld | 4 +- .../composition_profilerbioschemas.jsonld | 16 +++--- data/compphy/compphybioschemas.jsonld | 14 +++--- .../comprehengsivebioschemas.jsonld | 4 +- data/compseq/compseqbioschemas.jsonld | 14 +++--- ...mptox_chemistry_dashboardbioschemas.jsonld | 4 +- .../compute_pi_mwbioschemas.jsonld | 4 +- .../computecoveragebioschemas.jsonld | 4 +- data/computel/computelbioschemas.jsonld | 12 ++--- data/comsin/comsinbioschemas.jsonld | 4 +- data/comspari/comsparibioschemas.jsonld | 2 +- data/comw/comwbioschemas.jsonld | 4 +- data/conan-snv/conan-snvbioschemas.jsonld | 4 +- data/conan/conanbioschemas.jsonld | 4 +- data/conbase/conbasebioschemas.jsonld | 12 ++--- data/condel/condelbioschemas.jsonld | 10 ++-- data/condetri/condetribioschemas.jsonld | 4 +- data/condop/condopbioschemas.jsonld | 12 ++--- data/condor/condorbioschemas.jsonld | 6 +-- data/conekt/conektbioschemas.jsonld | 8 +-- data/conet/conetbioschemas.jsonld | 14 +++--- data/confac/confacbioschemas.jsonld | 4 +- data/confess/confessbioschemas.jsonld | 6 +-- data/confined/confinedbioschemas.jsonld | 10 ++-- data/confocalgn/confocalgnbioschemas.jsonld | 4 +- data/conics/conicsbioschemas.jsonld | 4 +- data/conkit/conkitbioschemas.jsonld | 4 +- data/conodictor/conodictorbioschemas.jsonld | 4 +- data/conoserver/conoserverbioschemas.jsonld | 10 ++-- data/conplex/conplexbioschemas.jsonld | 4 +- data/conquass/conquassbioschemas.jsonld | 4 +- data/conr/conrbioschemas.jsonld | 10 ++-- data/conreal/conrealbioschemas.jsonld | 4 +- data/cons/consbioschemas.jsonld | 14 +++--- data/consambig/consambigbioschemas.jsonld | 10 ++-- data/consensus/consensusbioschemas.jsonld | 4 +- .../consensusclusterplusbioschemas.jsonld | 28 +++++------ .../consensuspathdbbioschemas.jsonld | 4 +- .../consensusseekerbioschemas.jsonld | 4 +- data/conseq/conseqbioschemas.jsonld | 2 +- data/consite/consitebioschemas.jsonld | 4 +- data/console/consolebioschemas.jsonld | 12 ++--- data/conspred/conspredbioschemas.jsonld | 4 +- data/constax/constaxbioschemas.jsonld | 4 +- data/consurf-db/consurf-dbbioschemas.jsonld | 4 +- data/contedb/contedbbioschemas.jsonld | 26 +++++----- .../context-explorerbioschemas.jsonld | 8 +-- data/contibait/contibaitbioschemas.jsonld | 14 +++--- data/contra_v2/contra_v2bioschemas.jsonld | 8 +-- data/contra_v3/contra_v3bioschemas.jsonld | 12 ++--- data/conumee/conumeebioschemas.jsonld | 4 +- data/convaq/convaqbioschemas.jsonld | 16 +++--- .../convert-matrixbioschemas.jsonld | 22 ++++---- data/convert/convertbioschemas.jsonld | 4 +- .../convert2annovarbioschemas.jsonld | 4 +- ...anscriptfile_fastqtofastabioschemas.jsonld | 4 +- data/convmhc/convmhcbioschemas.jsonld | 4 +- .../coordinateserverbioschemas.jsonld | 4 +- .../coordinatestosequencebioschemas.jsonld | 4 +- data/copa/copabioschemas.jsonld | 4 +- data/copap/copapbioschemas.jsonld | 4 +- data/copasi/copasibioschemas.jsonld | 4 +- data/copheism/copheismbioschemas.jsonld | 4 +- data/cophosk/cophoskbioschemas.jsonld | 16 +++--- data/coprarna/coprarnabioschemas.jsonld | 28 +++++------ data/cops/copsbioschemas.jsonld | 4 +- .../copycatlayoutbioschemas.jsonld | 4 +- data/copynumber/copynumberbioschemas.jsonld | 18 +++---- data/copywriter/copywriterbioschemas.jsonld | 20 ++++---- data/coral/coralbioschemas.jsonld | 4 +- data/coraltbase/coraltbasebioschemas.jsonld | 28 +++++------ data/corbi/corbibioschemas.jsonld | 14 +++--- data/core/corebioschemas.jsonld | 4 +- data/core_hunter/core_hunterbioschemas.jsonld | 8 +-- data/coregenes/coregenesbioschemas.jsonld | 14 +++--- data/coregnet/coregnetbioschemas.jsonld | 14 +++--- data/coremic/coremicbioschemas.jsonld | 6 +-- .../coremine_medicalbioschemas.jsonld | 4 +- data/coremri/coremribioschemas.jsonld | 12 ++--- data/coreslicer/coreslicerbioschemas.jsonld | 16 +++--- data/coretracker/coretrackerbioschemas.jsonld | 4 +- data/corgen/corgenbioschemas.jsonld | 2 +- data/corgi/corgibioschemas.jsonld | 20 ++++---- data/corkoakdb/corkoakdbbioschemas.jsonld | 4 +- data/cormotif/cormotifbioschemas.jsonld | 4 +- data/cormut/cormutbioschemas.jsonld | 6 +-- data/cornai/cornaibioschemas.jsonld | 4 +- data/cornet/cornetbioschemas.jsonld | 4 +- .../cornet_arabidopsisbioschemas.jsonld | 4 +- .../cornet_maizebioschemas.jsonld | 4 +- .../correct_bacodebioschemas.jsonld | 4 +- data/correlogo/correlogobioschemas.jsonld | 4 +- data/corrna/corrnabioschemas.jsonld | 8 +-- data/corset/corsetbioschemas.jsonld | 4 +- data/corum/corumbioschemas.jsonld | 16 +++--- .../coryneregnetbioschemas.jsonld | 12 ++--- data/coseq/coseqbioschemas.jsonld | 2 +- data/cosims/cosimsbioschemas.jsonld | 4 +- data/cosmic/cosmicbioschemas.jsonld | 40 +++++++-------- data/cosmiq/cosmiqbioschemas.jsonld | 12 ++--- data/cosnet/cosnetbioschemas.jsonld | 2 +- data/coss/cossbioschemas.jsonld | 4 +- data/costat/costatbioschemas.jsonld | 4 +- data/couger/cougerbioschemas.jsonld | 8 +-- data/countclust/countclustbioschemas.jsonld | 6 +-- .../countnumber_parallelbioschemas.jsonld | 4 +- .../countreadgcpercentbioschemas.jsonld | 4 +- data/countsimqc/countsimqcbioschemas.jsonld | 4 +- data/cov2html/cov2htmlbioschemas.jsonld | 2 +- data/coval/covalbioschemas.jsonld | 4 +- .../covalentdock_cloudbioschemas.jsonld | 4 +- data/coveb/covebbioschemas.jsonld | 4 +- data/covenntree/covenntreebioschemas.jsonld | 16 +++--- .../coverageviewbioschemas.jsonld | 2 +- data/covrna/covrnabioschemas.jsonld | 8 +-- data/cowpi/cowpibioschemas.jsonld | 14 +++--- data/coxpresdb/coxpresdbbioschemas.jsonld | 4 +- data/cpag/cpagbioschemas.jsonld | 4 +- data/cpbayes/cpbayesbioschemas.jsonld | 4 +- data/cpc/cpcbioschemas.jsonld | 26 +++++----- data/cpc2/cpc2bioschemas.jsonld | 12 ++--- data/cpdb/cpdbbioschemas.jsonld | 4 +- data/cpgavas/cpgavasbioschemas.jsonld | 4 +- data/cpgavas2/cpgavas2bioschemas.jsonld | 14 +++--- data/cpgplot-ebi/cpgplot-ebibioschemas.jsonld | 4 +- data/cpgplot/cpgplotbioschemas.jsonld | 16 +++--- data/cpgreport/cpgreportbioschemas.jsonld | 8 +-- data/cphmodels/cphmodelsbioschemas.jsonld | 18 +++---- data/cplexa/cplexabioschemas.jsonld | 2 +- data/cpmcglm/cpmcglmbioschemas.jsonld | 4 +- data/cpmd/cpmdbioschemas.jsonld | 4 +- data/cpndb/cpndbbioschemas.jsonld | 2 +- data/cpred/cpredbioschemas.jsonld | 4 +- data/cpss/cpssbioschemas.jsonld | 8 +-- data/cptra/cptrabioschemas.jsonld | 4 +- data/cpvsnp/cpvsnpbioschemas.jsonld | 8 +-- data/cqn/cqnbioschemas.jsonld | 20 ++++---- data/cr-est/cr-estbioschemas.jsonld | 4 +- data/cra_toolbox/cra_toolboxbioschemas.jsonld | 2 +- data/crac/cracbioschemas.jsonld | 18 +++---- data/cracle/craclebioschemas.jsonld | 4 +- data/crambled/crambledbioschemas.jsonld | 24 ++++----- data/crc64/crc64bioschemas.jsonld | 4 +- data/crcrpred/crcrpredbioschemas.jsonld | 4 +- data/crcview/crcviewbioschemas.jsonld | 2 +- .../createcontrolsubsetbioschemas.jsonld | 4 +- data/cregulome/cregulomebioschemas.jsonld | 8 +-- data/creme/cremebioschemas.jsonld | 4 +- data/crh/crhbioschemas.jsonld | 4 +- data/crimage/crimagebioschemas.jsonld | 2 +- data/crispi/crispibioschemas.jsonld | 4 +- data/crispr-era/crispr-erabioschemas.jsonld | 4 +- .../crispr-focusbioschemas.jsonld | 12 ++--- data/crispr-ge/crispr-gebioschemas.jsonld | 4 +- data/crispr-p/crispr-pbioschemas.jsonld | 2 +- .../crisprcasfinderbioschemas.jsonld | 10 ++-- .../crisprdirectbioschemas.jsonld | 4 +- .../crisprfinderbioschemas.jsonld | 4 +- data/crisprmap/crisprmapbioschemas.jsonld | 24 ++++----- data/crisprseek/crisprseekbioschemas.jsonld | 16 +++--- .../crisprseekplusbioschemas.jsonld | 2 +- .../crisprvariantsbioschemas.jsonld | 4 +- data/crispulator/crispulatorbioschemas.jsonld | 2 +- data/crlmm/crlmmbioschemas.jsonld | 16 +++--- data/crmb/crmbbioschemas.jsonld | 2 +- data/crnpred/crnpredbioschemas.jsonld | 4 +- data/croco/crocobioschemas.jsonld | 8 +-- data/crop/cropbioschemas.jsonld | 4 +- data/cropcircdb/cropcircdbbioschemas.jsonld | 12 ++--- data/croppal/croppalbioschemas.jsonld | 8 +-- data/cropper/cropperbioschemas.jsonld | 8 +-- data/crossalive/crossalivebioschemas.jsonld | 4 +- data/crosscheck/crosscheckbioschemas.jsonld | 4 +- data/crosshub/crosshubbioschemas.jsonld | 8 +-- .../crosslinkwgcnabioschemas.jsonld | 2 +- data/crossmeta/crossmetabioschemas.jsonld | 4 +- data/crosstalkdb/crosstalkdbbioschemas.jsonld | 2 +- data/crowdbreaks/crowdbreaksbioschemas.jsonld | 2 +- data/crp/crpbioschemas.jsonld | 4 +- data/crunch/crunchbioschemas.jsonld | 2 +- data/crusview/crusviewbioschemas.jsonld | 6 +-- data/cryfa/cryfabioschemas.jsonld | 4 +- data/cryptodb/cryptodbbioschemas.jsonld | 2 +- data/crysalis/crysalisbioschemas.jsonld | 2 +- data/crysol/crysolbioschemas.jsonld | 4 +- data/crysplot/crysplotbioschemas.jsonld | 2 +- data/crystfel/crystfelbioschemas.jsonld | 12 ++--- data/cs-rosetta3/cs-rosetta3bioschemas.jsonld | 4 +- data/cs23d/cs23dbioschemas.jsonld | 4 +- data/cs2bp2-plot/cs2bp2-plotbioschemas.jsonld | 14 +++--- data/csa/csabioschemas.jsonld | 4 +- data/csar/csarbioschemas.jsonld | 16 +++--- .../csar_scaffoldingbioschemas.jsonld | 4 +- data/csaw/csawbioschemas.jsonld | 18 +++---- data/cscan/cscanbioschemas.jsonld | 4 +- data/cscape/cscapebioschemas.jsonld | 8 +-- data/csdeconv/csdeconvbioschemas.jsonld | 4 +- data/csesa/csesabioschemas.jsonld | 8 +-- ...hl_fastx_artifacts_filterbioschemas.jsonld | 2 +- .../cshl_fastx_collapserbioschemas.jsonld | 4 +- ..._nucleotides_distributionbioschemas.jsonld | 4 +- .../cshl_fastx_renamerbioschemas.jsonld | 4 +- ..._fastx_reverse_complementbioschemas.jsonld | 4 +- .../cshl_fastx_trimmerbioschemas.jsonld | 4 +- ...on_fastx_barcode_splitterbioschemas.jsonld | 4 +- data/cshmm/cshmmbioschemas.jsonld | 4 +- data/csm-lig/csm-ligbioschemas.jsonld | 16 +++--- data/csm/csmbioschemas.jsonld | 4 +- data/csmetapred/csmetapredbioschemas.jsonld | 4 +- data/csnap/csnapbioschemas.jsonld | 6 +-- data/cspritz/cspritzbioschemas.jsonld | 4 +- data/csq/csqbioschemas.jsonld | 4 +- data/css/cssbioschemas.jsonld | 4 +- data/cssp/csspbioschemas.jsonld | 8 +-- data/cstea/csteabioschemas.jsonld | 28 +++++------ data/ctc/ctcbioschemas.jsonld | 8 +-- data/ctd/ctdbioschemas.jsonld | 4 +- data/ctdquerier/ctdquerierbioschemas.jsonld | 4 +- data/ctk_clip/ctk_clipbioschemas.jsonld | 12 ++--- data/ctsge/ctsgebioschemas.jsonld | 4 +- data/cube-db/cube-dbbioschemas.jsonld | 4 +- data/cuda-ec/cuda-ecbioschemas.jsonld | 4 +- data/cuffcompare/cuffcomparebioschemas.jsonld | 4 +- data/cuffdiff/cuffdiffbioschemas.jsonld | 6 +-- data/cufflinks/cufflinksbioschemas.jsonld | 8 +-- data/cummerbund/cummerbundbioschemas.jsonld | 6 +-- data/cuneiform/cuneiformbioschemas.jsonld | 8 +-- data/cupsat/cupsatbioschemas.jsonld | 4 +- data/curves/curvesbioschemas.jsonld | 4 +- data/cushaw3/cushaw3bioschemas.jsonld | 6 +-- data/cusp/cuspbioschemas.jsonld | 14 +++--- data/customprodb/customprodbbioschemas.jsonld | 8 +-- data/cutadapt/cutadaptbioschemas.jsonld | 4 +- data/cutgextract/cutgextractbioschemas.jsonld | 10 ++-- data/cuticledb/cuticledbbioschemas.jsonld | 10 ++-- .../cutpointsoehrbioschemas.jsonld | 16 +++--- data/cutseq/cutseqbioschemas.jsonld | 18 +++---- data/cve/cvebioschemas.jsonld | 4 +- data/cwdprnp/cwdprnpbioschemas.jsonld | 4 +- data/cyana/cyanabioschemas.jsonld | 4 +- data/cyanimator/cyanimatorbioschemas.jsonld | 16 +++--- data/cyanobase/cyanobasebioschemas.jsonld | 4 +- data/cyanolyase/cyanolyasebioschemas.jsonld | 4 +- data/cycle/cyclebioschemas.jsonld | 8 +-- data/cyclebase/cyclebasebioschemas.jsonld | 6 +-- data/cyclops/cyclopsbioschemas.jsonld | 2 +- data/cyclum/cyclumbioschemas.jsonld | 2 +- data/cyclus3d/cyclus3dbioschemas.jsonld | 2 +- data/cydar/cydarbioschemas.jsonld | 4 +- data/cygenexpi/cygenexpibioschemas.jsonld | 8 +-- data/cylofold/cylofoldbioschemas.jsonld | 8 +-- data/cynetsvm/cynetsvmbioschemas.jsonld | 4 +- data/cyrest/cyrestbioschemas.jsonld | 22 ++++---- data/cyrface/cyrfacebioschemas.jsonld | 8 +-- data/cytodx/cytodxbioschemas.jsonld | 4 +- .../cytof_workflowbioschemas.jsonld | 16 +++--- data/cytofkit/cytofkitbioschemas.jsonld | 12 ++--- data/cytogps/cytogpsbioschemas.jsonld | 2 +- data/cytolib/cytolibbioschemas.jsonld | 4 +- data/cytomine/cytominebioschemas.jsonld | 4 +- data/cytoml/cytomlbioschemas.jsonld | 4 +- data/cytopacq/cytopacqbioschemas.jsonld | 2 +- .../cytosaddlesumbioschemas.jsonld | 4 +- data/cytoscape/cytoscapebioschemas.jsonld | 4 +- .../cytoscape_webbioschemas.jsonld | 4 +- data/cytotrace/cytotracebioschemas.jsonld | 2 +- data/cyvcf2/cyvcf2bioschemas.jsonld | 8 +-- data/d-genies/d-geniesbioschemas.jsonld | 14 +++--- data/d3e/d3ebioschemas.jsonld | 8 +-- data/dad-is/dad-isbioschemas.jsonld | 4 +- data/dada2/dada2bioschemas.jsonld | 18 +++---- data/daglogo/daglogobioschemas.jsonld | 4 +- data/dali/dalibioschemas.jsonld | 4 +- data/dalilite/dalilitebioschemas.jsonld | 12 ++--- data/dama/damabioschemas.jsonld | 4 +- data/dambe/dambebioschemas.jsonld | 14 +++--- .../damidseq_pipelinebioschemas.jsonld | 16 +++--- data/damirseq/damirseqbioschemas.jsonld | 4 +- data/dammit/dammitbioschemas.jsonld | 2 +- data/dampd/dampdbioschemas.jsonld | 4 +- data/dan/danbioschemas.jsonld | 12 ++--- data/danpos/danposbioschemas.jsonld | 8 +-- data/dante/dantebioschemas.jsonld | 4 +- data/darc_site/darc_sitebioschemas.jsonld | 4 +- data/dario/dariobioschemas.jsonld | 4 +- data/dart/dartbioschemas.jsonld | 20 ++++---- .../das-tmfilterbioschemas.jsonld | 2 +- data/das/dasbioschemas.jsonld | 2 +- data/dasir/dasirbioschemas.jsonld | 12 ++--- data/dasmiweb/dasmiwebbioschemas.jsonld | 4 +- data/dasty/dastybioschemas.jsonld | 4 +- ..._information_system_daisybioschemas.jsonld | 28 +++++------ ...bacterial_group_2_intronsbioschemas.jsonld | 4 +- .../database_managerbioschemas.jsonld | 4 +- .../datacube_explorerbioschemas.jsonld | 4 +- .../datasets2toolsbioschemas.jsonld | 4 +- data/datastorr/datastorrbioschemas.jsonld | 18 +++---- data/dataup/dataupbioschemas.jsonld | 28 +++++------ data/datf/datfbioschemas.jsonld | 4 +- ..._bioinformatics_resourcesbioschemas.jsonld | 4 +- data/david_ws/david_wsbioschemas.jsonld | 2 +- data/davidquery/davidquerybioschemas.jsonld | 10 ++-- data/dbass/dbassbioschemas.jsonld | 4 +- data/dbbqs/dbbqsbioschemas.jsonld | 2 +- data/dbcan/dbcanbioschemas.jsonld | 4 +- data/dbchip/dbchipbioschemas.jsonld | 4 +- data/dbd/dbdbioschemas.jsonld | 4 +- data/dbdnv/dbdnvbioschemas.jsonld | 4 +- data/dbest/dbestbioschemas.jsonld | 4 +- data/dbeth/dbethbioschemas.jsonld | 4 +- data/dbfetch/dbfetchbioschemas.jsonld | 4 +- data/dbgap/dbgapbioschemas.jsonld | 18 +++---- data/dbiblast/dbiblastbioschemas.jsonld | 16 +++--- data/dbifasta/dbifastabioschemas.jsonld | 8 +-- data/dbiflat/dbiflatbioschemas.jsonld | 8 +-- data/dbigcg/dbigcgbioschemas.jsonld | 12 ++--- data/dbindr/dbindrbioschemas.jsonld | 4 +- data/dbmae/dbmaebioschemas.jsonld | 20 ++++---- data/dbnp/dbnpbioschemas.jsonld | 4 +- data/dbnsfp/dbnsfpbioschemas.jsonld | 12 ++--- data/dbptm/dbptmbioschemas.jsonld | 16 +++--- data/dbsnp-q/dbsnp-qbioschemas.jsonld | 4 +- data/dbsnp/dbsnpbioschemas.jsonld | 8 +-- data/dbsts/dbstsbioschemas.jsonld | 4 +- data/dbsuper/dbsuperbioschemas.jsonld | 12 ++--- data/dbtell/dbtellbioschemas.jsonld | 12 ++--- data/dbtl/dbtlbioschemas.jsonld | 4 +- data/dbtoolkit/dbtoolkitbioschemas.jsonld | 8 +-- data/dbxcompress/dbxcompressbioschemas.jsonld | 14 +++--- data/dbxedam/dbxedambioschemas.jsonld | 12 ++--- data/dbxfasta/dbxfastabioschemas.jsonld | 6 +-- data/dbxflat/dbxflatbioschemas.jsonld | 12 ++--- data/dbxgcg/dbxgcgbioschemas.jsonld | 12 ++--- data/dbxobo/dbxobobioschemas.jsonld | 16 +++--- data/dbxreport/dbxreportbioschemas.jsonld | 16 +++--- data/dbxresource/dbxresourcebioschemas.jsonld | 8 +-- data/dbxstat/dbxstatbioschemas.jsonld | 10 ++-- data/dbxtax/dbxtaxbioschemas.jsonld | 16 +++--- .../dbxuncompressbioschemas.jsonld | 12 ++--- data/dca/dcabioschemas.jsonld | 2 +- data/dcell/dcellbioschemas.jsonld | 4 +- data/dcgl/dcglbioschemas.jsonld | 4 +- data/dcgor/dcgorbioschemas.jsonld | 8 +-- data/dcgsa/dcgsabioschemas.jsonld | 8 +-- data/dchiprep/dchiprepbioschemas.jsonld | 14 +++--- data/dclip/dclipbioschemas.jsonld | 2 +- data/dcmf/dcmfbioschemas.jsonld | 4 +- data/dcon/dconbioschemas.jsonld | 6 +-- data/ddap/ddapbioschemas.jsonld | 8 +-- data/ddbj/ddbjbioschemas.jsonld | 4 +- data/ddbrna/ddbrnabioschemas.jsonld | 2 +- data/ddct/ddctbioschemas.jsonld | 4 +- data/ddecon/ddeconbioschemas.jsonld | 12 ++--- data/ddgraph/ddgraphbioschemas.jsonld | 24 ++++----- data/ddi-cpi/ddi-cpibioschemas.jsonld | 4 +- data/ddpcr/ddpcrbioschemas.jsonld | 20 ++++---- data/ddpcrclust/ddpcrclustbioschemas.jsonld | 8 +-- data/ddt/ddtbioschemas.jsonld | 4 +- data/debrowser/debrowserbioschemas.jsonld | 4 +- data/deca/decabioschemas.jsonld | 4 +- data/decipher/decipherbioschemas.jsonld | 4 +- .../decipher_rare_diseasebioschemas.jsonld | 18 +++---- data/decoad/decoadbioschemas.jsonld | 12 ++--- data/decode/decodebioschemas.jsonld | 4 +- .../decomptumor2sigbioschemas.jsonld | 22 ++++---- data/deconmsn/deconmsnbioschemas.jsonld | 4 +- data/deconrnaseq/deconrnaseqbioschemas.jsonld | 4 +- data/deconseq/deconseqbioschemas.jsonld | 8 +-- data/deconstruct/deconstructbioschemas.jsonld | 2 +- .../decontaminerbioschemas.jsonld | 4 +- data/decontools/decontoolsbioschemas.jsonld | 8 +-- data/decostar/decostarbioschemas.jsonld | 12 ++--- .../decoydeveloperbioschemas.jsonld | 4 +- .../decrease_redundancybioschemas.jsonld | 4 +- data/decres/decresbioschemas.jsonld | 4 +- data/decryptor/decryptorbioschemas.jsonld | 8 +-- data/dedal/dedalbioschemas.jsonld | 4 +- data/deds/dedsbioschemas.jsonld | 4 +- data/deep/deepbioschemas.jsonld | 4 +- data/deepbase/deepbasebioschemas.jsonld | 4 +- data/deepblue/deepbluebioschemas.jsonld | 12 ++--- data/deepbluer/deepbluerbioschemas.jsonld | 18 +++---- data/deepcircode/deepcircodebioschemas.jsonld | 8 +-- data/deepdr/deepdrbioschemas.jsonld | 4 +- data/deepefflux/deepeffluxbioschemas.jsonld | 4 +- data/deeploc/deeplocbioschemas.jsonld | 4 +- data/deeppvp/deeppvpbioschemas.jsonld | 10 ++-- data/deepred/deepredbioschemas.jsonld | 8 +-- data/deepsig/deepsigbioschemas.jsonld | 4 +- data/deepsnv/deepsnvbioschemas.jsonld | 16 +++--- data/deepsplice/deepsplicebioschemas.jsonld | 14 +++--- data/deepsynergy/deepsynergybioschemas.jsonld | 4 +- data/deeptools/deeptoolsbioschemas.jsonld | 4 +- data/deeptype/deeptypebioschemas.jsonld | 4 +- data/deepubi/deepubibioschemas.jsonld | 4 +- data/defcom/defcombioschemas.jsonld | 4 +- data/deformats/deformatsbioschemas.jsonld | 8 +-- data/defume/defumebioschemas.jsonld | 14 +++--- data/defuse/defusebioschemas.jsonld | 4 +- data/degapseq/degapseqbioschemas.jsonld | 16 +++--- data/degps/degpsbioschemas.jsonld | 8 +-- data/degraph/degraphbioschemas.jsonld | 8 +-- data/degreport/degreportbioschemas.jsonld | 4 +- data/degseq/degseqbioschemas.jsonld | 8 +-- .../delayedarraybioschemas.jsonld | 2 +- .../delayedmatrixstatsbioschemas.jsonld | 4 +- data/delly2/delly2bioschemas.jsonld | 22 ++++---- .../delphi_forcebioschemas.jsonld | 4 +- data/delphiforce/delphiforcebioschemas.jsonld | 20 ++++---- data/delta_mass/delta_massbioschemas.jsonld | 4 +- .../deltag_predictionbioschemas.jsonld | 4 +- data/deltamass/deltamassbioschemas.jsonld | 2 +- data/deltanet/deltanetbioschemas.jsonld | 4 +- data/demand/demandbioschemas.jsonld | 6 +-- data/demuxlet/demuxletbioschemas.jsonld | 2 +- data/den-im/den-imbioschemas.jsonld | 4 +- data/dendrix/dendrixbioschemas.jsonld | 4 +- .../dendroscope3bioschemas.jsonld | 4 +- data/dendrosplit/dendrosplitbioschemas.jsonld | 10 ++-- .../denovo_pipelinebioschemas.jsonld | 4 +- data/denovogui/denovoguibioschemas.jsonld | 8 +-- data/density/densitybioschemas.jsonld | 14 +++--- .../densityserverbioschemas.jsonld | 4 +- data/deogen2/deogen2bioschemas.jsonld | 8 +-- data/dep/depbioschemas.jsonld | 4 +- data/dependency/dependencybioschemas.jsonld | 4 +- data/depib/depibbioschemas.jsonld | 24 ++++----- data/deploid/deploidbioschemas.jsonld | 4 +- data/depot/depotbioschemas.jsonld | 14 +++--- data/depth/depthbioschemas.jsonld | 2 +- data/deqor/deqorbioschemas.jsonld | 14 +++--- data/derfinder/derfinderbioschemas.jsonld | 16 +++--- .../derfinderhelperbioschemas.jsonld | 16 +++--- .../derfinderplotbioschemas.jsonld | 16 +++--- data/descan2/descan2bioschemas.jsonld | 2 +- data/descfold/descfoldbioschemas.jsonld | 4 +- data/descseq/descseqbioschemas.jsonld | 14 +++--- data/deseq/deseqbioschemas.jsonld | 28 +++++------ data/deseq2/deseq2bioschemas.jsonld | 4 +- .../designsignaturesbioschemas.jsonld | 4 +- data/desingle/desinglebioschemas.jsonld | 4 +- data/destiny/destinybioschemas.jsonld | 4 +- data/desubs/desubsbioschemas.jsonld | 4 +- data/detect/detectbioschemas.jsonld | 4 +- data/detectir/detectirbioschemas.jsonld | 8 +-- data/detector/detectorbioschemas.jsonld | 4 +- data/determ/determbioschemas.jsonld | 4 +- data/deus/deusbioschemas.jsonld | 4 +- data/deuterater/deuteraterbioschemas.jsonld | 4 +- data/deuteros/deuterosbioschemas.jsonld | 4 +- data/devis/devisbioschemas.jsonld | 10 ++-- ...ression_workflow_executorbioschemas.jsonld | 4 +- data/dexseq/dexseqbioschemas.jsonld | 28 +++++------ data/dexus/dexusbioschemas.jsonld | 20 ++++---- data/dfast/dfastbioschemas.jsonld | 4 +- data/dfp/dfpbioschemas.jsonld | 8 +-- data/dgca/dgcabioschemas.jsonld | 4 +- data/dgd/dgdbioschemas.jsonld | 4 +- data/dgva/dgvabioschemas.jsonld | 18 +++---- data/dgw/dgwbioschemas.jsonld | 8 +-- data/dhcl/dhclbioschemas.jsonld | 4 +- data/dia-db/dia-dbbioschemas.jsonld | 20 ++++---- data/dia-umpire/dia-umpirebioschemas.jsonld | 4 +- data/dial/dialbioschemas.jsonld | 4 +- data/dialign-tx/dialign-txbioschemas.jsonld | 2 +- data/dialign/dialignbioschemas.jsonld | 4 +- data/dials/dialsbioschemas.jsonld | 10 ++-- .../diana-lncbasebioschemas.jsonld | 12 ++--- .../diana-microtbioschemas.jsonld | 4 +- .../diana-mirextrabioschemas.jsonld | 28 +++++------ .../diana-mirgenbioschemas.jsonld | 30 +++++------ .../diana-mirpathbioschemas.jsonld | 16 +++--- .../diana_mirpathbioschemas.jsonld | 2 +- data/dianna/diannabioschemas.jsonld | 4 +- data/diark/diarkbioschemas.jsonld | 4 +- data/dicer/dicerbioschemas.jsonld | 4 +- data/dichromatch/dichromatchbioschemas.jsonld | 4 +- data/dichroweb/dichrowebbioschemas.jsonld | 2 +- data/dictybase/dictybasebioschemas.jsonld | 4 +- .../dictybase_update_2011bioschemas.jsonld | 16 +++--- .../dictyexpressbioschemas.jsonld | 4 +- data/dida/didabioschemas.jsonld | 28 +++++------ data/diffany/diffanybioschemas.jsonld | 4 +- data/diffatonce/diffatoncebioschemas.jsonld | 4 +- data/diffbind/diffbindbioschemas.jsonld | 16 +++--- data/diffcoexp/diffcoexpbioschemas.jsonld | 4 +- data/diffcyt/diffcytbioschemas.jsonld | 2 +- data/diffexpress/diffexpressbioschemas.jsonld | 22 ++++---- .../diffgeneanalysisbioschemas.jsonld | 4 +- data/diffhic/diffhicbioschemas.jsonld | 20 ++++---- data/difflogo/difflogobioschemas.jsonld | 36 ++++++------- data/diffloop/diffloopbioschemas.jsonld | 8 +-- data/diffreps/diffrepsbioschemas.jsonld | 4 +- data/diffseq/diffseqbioschemas.jsonld | 12 ++--- data/diffslc/diffslcbioschemas.jsonld | 2 +- data/diffustats/diffustatsbioschemas.jsonld | 8 +-- data/digchem/digchembioschemas.jsonld | 20 ++++---- .../digenome-seqbioschemas.jsonld | 4 +- data/diggit/diggitbioschemas.jsonld | 4 +- data/digsee/digseebioschemas.jsonld | 2 +- data/dilimot/dilimotbioschemas.jsonld | 4 +- data/dimm-sc/dimm-scbioschemas.jsonld | 4 +- data/dinamo/dinamobioschemas.jsonld | 2 +- data/dinc/dincbioschemas.jsonld | 12 ++--- data/dinies/diniesbioschemas.jsonld | 4 +- data/dinosaur/dinosaurbioschemas.jsonld | 20 ++++---- data/dintor/dintorbioschemas.jsonld | 20 ++++---- data/dip/dipbioschemas.jsonld | 4 +- data/dipole/dipolebioschemas.jsonld | 2 +- data/dire/direbioschemas.jsonld | 4 +- data/director/directorbioschemas.jsonld | 4 +- .../dirichletmultinomialbioschemas.jsonld | 8 +-- .../disambiguatebioschemas.jsonld | 18 +++---- .../disco_segmentationbioschemas.jsonld | 4 +- data/discordant/discordantbioschemas.jsonld | 12 ++--- data/discovar/discovarbioschemas.jsonld | 4 +- data/discoversl/discoverslbioschemas.jsonld | 4 +- .../discovery_environmentbioschemas.jsonld | 2 +- data/discromark/discromarkbioschemas.jsonld | 4 +- .../disease_ontologybioschemas.jsonld | 20 ++++---- data/diseasecard/diseasecardbioschemas.jsonld | 12 ++--- .../diseaseconnectbioschemas.jsonld | 4 +- data/diseasemeth/diseasemethbioschemas.jsonld | 2 +- data/diseases/diseasesbioschemas.jsonld | 4 +- .../disembl_ws_jabawsbioschemas.jsonld | 4 +- .../disentanglerbioschemas.jsonld | 4 +- data/disgenet/disgenetbioschemas.jsonld | 34 ++++++------- data/dislocate/dislocatebioschemas.jsonld | 4 +- data/dismiss/dismissbioschemas.jsonld | 20 ++++---- data/disnor/disnorbioschemas.jsonld | 4 +- data/disprot/disprotbioschemas.jsonld | 22 ++++---- data/disqover/disqoverbioschemas.jsonld | 4 +- data/distancep/distancepbioschemas.jsonld | 8 +-- data/distild/distildbioschemas.jsonld | 4 +- data/distiller/distillerbioschemas.jsonld | 8 +-- data/distmap/distmapbioschemas.jsonld | 6 +-- data/distmat/distmatbioschemas.jsonld | 8 +-- data/distnet/distnetbioschemas.jsonld | 10 ++-- data/disulfind/disulfindbioschemas.jsonld | 4 +- data/disv-hpv16/disv-hpv16bioschemas.jsonld | 4 +- data/disvis/disvisbioschemas.jsonld | 4 +- data/divenn/divennbioschemas.jsonld | 8 +-- .../diversitycollectionbioschemas.jsonld | 12 ++--- .../diversityexsiccataebioschemas.jsonld | 12 ++--- .../diversityprojectsbioschemas.jsonld | 4 +- .../diversityscientifictermsbioschemas.jsonld | 8 +-- .../diversitytaxonnamesbioschemas.jsonld | 8 +-- data/dizzy-beats/dizzy-beatsbioschemas.jsonld | 4 +- data/dks/dksbioschemas.jsonld | 8 +-- data/dlocalmotif/dlocalmotifbioschemas.jsonld | 2 +- data/dmchmm/dmchmmbioschemas.jsonld | 2 +- data/dmdtoolkit/dmdtoolkitbioschemas.jsonld | 6 +-- data/dminda/dmindabioschemas.jsonld | 4 +- data/dmpy/dmpybioschemas.jsonld | 4 +- data/dmrcaller/dmrcallerbioschemas.jsonld | 4 +- data/dmrcate/dmrcatebioschemas.jsonld | 16 +++--- data/dmrfinder/dmrfinderbioschemas.jsonld | 6 +-- data/dmrforpairs/dmrforpairsbioschemas.jsonld | 28 +++++------ data/dmrscan/dmrscanbioschemas.jsonld | 4 +- data/dmu/dmubioschemas.jsonld | 4 +- data/dnaasm-link/dnaasm-linkbioschemas.jsonld | 4 +- data/dnaasm/dnaasmbioschemas.jsonld | 4 +- .../dnabarcodecompatibilitybioschemas.jsonld | 18 +++---- data/dnabarcodes/dnabarcodesbioschemas.jsonld | 8 +-- data/dnacopy/dnacopybioschemas.jsonld | 4 +- data/dnamate/dnamatebioschemas.jsonld | 4 +- data/dnaplotter/dnaplotterbioschemas.jsonld | 4 +- data/dnas/dnasbioschemas.jsonld | 4 +- data/dnascan/dnascanbioschemas.jsonld | 26 +++++----- data/dnaser/dnaserbioschemas.jsonld | 4 +- data/dnashaper/dnashaperbioschemas.jsonld | 12 ++--- data/dnatco/dnatcobioschemas.jsonld | 4 +- data/dnatools/dnatoolsbioschemas.jsonld | 4 +- data/dnatraffic/dnatrafficbioschemas.jsonld | 4 +- data/dnazip/dnazipbioschemas.jsonld | 4 +- data/dnenrich/dnenrichbioschemas.jsonld | 4 +- data/do-ms/do-msbioschemas.jsonld | 4 +- data/do_x3dna/do_x3dnabioschemas.jsonld | 4 +- data/doc2hpo/doc2hpobioschemas.jsonld | 10 ++-- data/docker4seq/docker4seqbioschemas.jsonld | 12 ++--- data/dockscore/dockscorebioschemas.jsonld | 10 ++-- data/dockstore/dockstorebioschemas.jsonld | 8 +-- ...e_institute_genome_portalbioschemas.jsonld | 4 +- data/doelan/doelanbioschemas.jsonld | 4 +- data/doestrare/doestrarebioschemas.jsonld | 2 +- data/dogma/dogmabioschemas.jsonld | 26 +++++----- data/dognet/dognetbioschemas.jsonld | 14 +++--- .../dogsitescorerbioschemas.jsonld | 4 +- data/dolce/dolcebioschemas.jsonld | 6 +-- data/domaination/domainationbioschemas.jsonld | 4 +- .../domainsignaturesbioschemas.jsonld | 6 +-- data/domine/dominebioschemas.jsonld | 2 +- data/domino/dominobioschemas.jsonld | 8 +-- data/dommino/domminobioschemas.jsonld | 4 +- data/doppelgangr/doppelgangrbioschemas.jsonld | 4 +- data/doqtl/doqtlbioschemas.jsonld | 8 +-- data/dorina/dorinabioschemas.jsonld | 28 +++++------ data/dose/dosebioschemas.jsonld | 12 ++--- data/dotlet/dotletbioschemas.jsonld | 4 +- data/dotmatcher/dotmatcherbioschemas.jsonld | 18 +++---- .../dotmatcher_ws_husarbioschemas.jsonld | 4 +- data/dotpath/dotpathbioschemas.jsonld | 16 +++--- data/dotter/dotterbioschemas.jsonld | 4 +- data/dottup/dottupbioschemas.jsonld | 12 ++--- .../dottup_ws_husarbioschemas.jsonld | 4 +- .../doubletdetectionbioschemas.jsonld | 4 +- data/doutfinder/doutfinderbioschemas.jsonld | 4 +- data/dove/dovebioschemas.jsonld | 18 +++---- data/dpubchem/dpubchembioschemas.jsonld | 4 +- data/dpvweb/dpvwebbioschemas.jsonld | 4 +- data/dragonfly/dragonflybioschemas.jsonld | 14 +++--- data/drap/drapbioschemas.jsonld | 8 +-- data/drar-cpi/drar-cpibioschemas.jsonld | 4 +- data/drawid/drawidbioschemas.jsonld | 8 +-- .../drawproteinsbioschemas.jsonld | 4 +- data/drcancer/drcancerbioschemas.jsonld | 22 ++++---- data/dreamtools/dreamtoolsbioschemas.jsonld | 16 +++--- data/dreg/dregbioschemas.jsonld | 16 +++--- data/drep/drepbioschemas.jsonld | 4 +- data/drexplorer/drexplorerbioschemas.jsonld | 4 +- data/drfinddata/drfinddatabioschemas.jsonld | 16 +++--- .../drfindformatbioschemas.jsonld | 10 ++-- data/drfindid/drfindidbioschemas.jsonld | 14 +++--- .../drfindresourcebioschemas.jsonld | 18 +++---- data/drfit/drfitbioschemas.jsonld | 2 +- data/drgap/drgapbioschemas.jsonld | 4 +- data/drget/drgetbioschemas.jsonld | 16 +++--- data/drimpute/drimputebioschemas.jsonld | 4 +- data/drimseq/drimseqbioschemas.jsonld | 8 +-- data/drivernet/drivernetbioschemas.jsonld | 8 +-- .../drl4cellmovementbioschemas.jsonld | 4 +- data/droids/droidsbioschemas.jsonld | 8 +-- data/dropclust/dropclustbioschemas.jsonld | 8 +-- .../dropletutilsbioschemas.jsonld | 4 +- data/dropnet/dropnetbioschemas.jsonld | 4 +- data/drsasp/drsaspbioschemas.jsonld | 2 +- data/drtext/drtextbioschemas.jsonld | 10 ++-- data/drug2gene/drug2genebioschemas.jsonld | 4 +- .../drug_reposerbioschemas.jsonld | 18 +++---- data/drugbank/drugbankbioschemas.jsonld | 4 +- data/drugcomb/drugcombbioschemas.jsonld | 28 +++++------ .../drugebility_blast_searchbioschemas.jsonld | 4 +- data/drugevar/drugevarbioschemas.jsonld | 2 +- data/drugr/drugrbioschemas.jsonld | 12 ++--- .../drugscoreppibioschemas.jsonld | 4 +- .../drugvsdiseasebioschemas.jsonld | 4 +- data/drvm/drvmbioschemas.jsonld | 18 +++---- data/dsap/dsapbioschemas.jsonld | 2 +- data/dscheck/dscheckbioschemas.jsonld | 4 +- data/dsea/dseabioschemas.jsonld | 8 +-- data/dsgseq/dsgseqbioschemas.jsonld | 2 +- data/dshift/dshiftbioschemas.jsonld | 4 +- data/dsimer/dsimerbioschemas.jsonld | 8 +-- data/dsk/dskbioschemas.jsonld | 2 +- data/dsm/dsmbioschemas.jsonld | 6 +-- data/dsrc/dsrcbioschemas.jsonld | 4 +- data/dss/dssbioschemas.jsonld | 2 +- data/dssp/dsspbioschemas.jsonld | 2 +- data/dsspcont/dsspcontbioschemas.jsonld | 4 +- data/dssr/dssrbioschemas.jsonld | 4 +- data/dstarm/dstarmbioschemas.jsonld | 2 +- data/dstruct/dstructbioschemas.jsonld | 6 +-- data/dsuite/dsuitebioschemas.jsonld | 4 +- data/dta/dtabioschemas.jsonld | 4 +- data/dualks/dualksbioschemas.jsonld | 8 +-- data/ductape/ductapebioschemas.jsonld | 4 +- data/dupchecker/dupcheckerbioschemas.jsonld | 16 +++--- .../dupgen_finderbioschemas.jsonld | 4 +- data/dupradar/dupradarbioschemas.jsonld | 18 +++---- data/dvass/dvassbioschemas.jsonld | 12 ++--- data/dyebias/dyebiasbioschemas.jsonld | 16 +++--- .../dynamicproteomics_dbbioschemas.jsonld | 4 +- data/dynamine/dynaminebioschemas.jsonld | 8 +-- data/dynamut/dynamutbioschemas.jsonld | 2 +- data/dynapho/dynaphobioschemas.jsonld | 2 +- data/dynasti/dynastibioschemas.jsonld | 14 +++--- data/dyndoc/dyndocbioschemas.jsonld | 4 +- data/e-lea3d/e-lea3dbioschemas.jsonld | 4 +- data/e-rna/e-rnabioschemas.jsonld | 4 +- data/e-rnai/e-rnaibioschemas.jsonld | 4 +- data/e-talen/e-talenbioschemas.jsonld | 12 ++--- data/e1ds/e1dsbioschemas.jsonld | 2 +- data/e2g/e2gbioschemas.jsonld | 8 +-- data/eager/eagerbioschemas.jsonld | 2 +- data/eagle_gxe/eagle_gxebioschemas.jsonld | 4 +- data/eagleview/eagleviewbioschemas.jsonld | 4 +- .../easyfrap-webbioschemas.jsonld | 20 ++++---- data/easyfrap/easyfrapbioschemas.jsonld | 4 +- data/easygene/easygenebioschemas.jsonld | 4 +- data/easyqc/easyqcbioschemas.jsonld | 4 +- data/easyqpcr/easyqpcrbioschemas.jsonld | 8 +-- data/easyrnaseq/easyrnaseqbioschemas.jsonld | 12 ++--- data/eat-rice/eat-ricebioschemas.jsonld | 22 ++++---- data/eb-eye/eb-eyebioschemas.jsonld | 4 +- data/ebarrays/ebarraysbioschemas.jsonld | 8 +-- data/ebas/ebasbioschemas.jsonld | 4 +- data/ebcoexpress/ebcoexpressbioschemas.jsonld | 6 +-- .../ebi_metagenomicsbioschemas.jsonld | 2 +- data/ebi_tools/ebi_toolsbioschemas.jsonld | 50 +++++++++---------- data/ebic/ebicbioschemas.jsonld | 8 +-- data/ebimage/ebimagebioschemas.jsonld | 14 +++--- .../ebola_genome_portalbioschemas.jsonld | 14 +++--- data/ebolaid/ebolaidbioschemas.jsonld | 8 +-- data/ebprot/ebprotbioschemas.jsonld | 6 +-- data/ebsea/ebseabioschemas.jsonld | 2 +- data/ebseq/ebseqbioschemas.jsonld | 4 +- data/ebseqhmm/ebseqhmmbioschemas.jsonld | 8 +-- data/ecccl/eccclbioschemas.jsonld | 12 ++--- data/eccetera/ecceterabioschemas.jsonld | 4 +- data/echo/echobioschemas.jsonld | 6 +-- data/echobase/echobasebioschemas.jsonld | 4 +- data/eclair/eclairbioschemas.jsonld | 4 +- data/ecolitk/ecolitkbioschemas.jsonld | 6 +-- data/ecoprestmet/ecoprestmetbioschemas.jsonld | 2 +- data/ecr_browser/ecr_browserbioschemas.jsonld | 4 +- data/ecrbpome/ecrbpomebioschemas.jsonld | 26 +++++----- data/edal/edalbioschemas.jsonld | 4 +- .../edam-browserbioschemas.jsonld | 4 +- data/edamdef/edamdefbioschemas.jsonld | 14 +++--- .../edamhasinputbioschemas.jsonld | 16 +++--- .../edamhasoutputbioschemas.jsonld | 8 +-- .../edamisformatbioschemas.jsonld | 10 ++-- data/edamisid/edamisidbioschemas.jsonld | 12 ++--- data/edamname/edamnamebioschemas.jsonld | 16 +++--- data/edaseq/edaseqbioschemas.jsonld | 14 +++--- data/edda/eddabioschemas.jsonld | 4 +- data/edgar/edgarbioschemas.jsonld | 8 +-- .../edgar_genomicsbioschemas.jsonld | 14 +++--- data/edge/edgebioschemas.jsonld | 8 +-- data/edger/edgerbioschemas.jsonld | 22 ++++---- data/edia/ediabioschemas.jsonld | 4 +- data/edialign/edialignbioschemas.jsonld | 6 +-- data/edisa/edisabioschemas.jsonld | 4 +- data/eds/edsbioschemas.jsonld | 4 +- data/eduliss/edulissbioschemas.jsonld | 2 +- data/eegc/eegcbioschemas.jsonld | 6 +-- data/eegmir/eegmirbioschemas.jsonld | 4 +- data/eegnet/eegnetbioschemas.jsonld | 10 ++-- data/eem_solver/eem_solverbioschemas.jsonld | 4 +- data/ef-seek/ef-seekbioschemas.jsonld | 4 +- data/efetch_pmc/efetch_pmcbioschemas.jsonld | 2 +- .../efetch_sequencebioschemas.jsonld | 4 +- data/efetch_snp/efetch_snpbioschemas.jsonld | 4 +- .../effectiveccbdbioschemas.jsonld | 4 +- data/effectivedb/effectivedbbioschemas.jsonld | 26 +++++----- .../effectiveeldbioschemas.jsonld | 8 +-- .../effectives346bioschemas.jsonld | 26 +++++----- data/effectivet3/effectivet3bioschemas.jsonld | 14 +++--- data/efs/efsbioschemas.jsonld | 10 ++-- data/ega/egabioschemas.jsonld | 4 +- data/egad/egadbioschemas.jsonld | 6 +-- data/egassembler/egassemblerbioschemas.jsonld | 4 +- .../eggnog-mapperbioschemas.jsonld | 8 +-- data/eggnog/eggnogbioschemas.jsonld | 14 +++--- data/egmrg/egmrgbioschemas.jsonld | 4 +- data/ego_viii/ego_viiibioschemas.jsonld | 4 +- data/egsea/egseabioschemas.jsonld | 16 +++--- data/ehecregnet/ehecregnetbioschemas.jsonld | 12 ++--- data/einverted/einvertedbioschemas.jsonld | 10 ++-- data/eir/eirbioschemas.jsonld | 22 ++++---- data/eisa/eisabioschemas.jsonld | 8 +-- data/el-maven/el-mavenbioschemas.jsonld | 4 +- data/el_pssm-rt/el_pssm-rtbioschemas.jsonld | 2 +- data/eland/elandbioschemas.jsonld | 4 +- data/elastodb/elastodbbioschemas.jsonld | 4 +- data/elbow/elbowbioschemas.jsonld | 8 +-- data/elemcor/elemcorbioschemas.jsonld | 10 ++-- .../elixir_elearning_portalbioschemas.jsonld | 4 +- data/elm/elmbioschemas.jsonld | 4 +- data/elmer/elmerbioschemas.jsonld | 4 +- .../elminstancemapperbioschemas.jsonld | 4 +- data/elmmatcher/elmmatcherbioschemas.jsonld | 4 +- data/elmmo/elmmobioschemas.jsonld | 4 +- data/elnemo/elnemobioschemas.jsonld | 4 +- data/elochoice/elochoicebioschemas.jsonld | 4 +- data/elviz/elvizbioschemas.jsonld | 18 +++---- data/emage/emagebioschemas.jsonld | 4 +- data/emap/emapbioschemas.jsonld | 4 +- data/emase/emasebioschemas.jsonld | 4 +- data/ematchsite/ematchsitebioschemas.jsonld | 2 +- data/embedsom/embedsombioschemas.jsonld | 4 +- .../embl2checklistsbioschemas.jsonld | 8 +-- data/emblmygff3/emblmygff3bioschemas.jsonld | 6 +-- data/emboss/embossbioschemas.jsonld | 8 +-- data/embossdata/embossdatabioschemas.jsonld | 18 +++---- .../embossupdatebioschemas.jsonld | 8 +-- .../embossversionbioschemas.jsonld | 16 +++--- data/emdb/emdbbioschemas.jsonld | 4 +- data/emdomics/emdomicsbioschemas.jsonld | 8 +-- data/emhp/emhpbioschemas.jsonld | 4 +- data/emma/emmabioschemas.jsonld | 12 ++--- data/emma2/emma2bioschemas.jsonld | 6 +-- data/emma2_ws/emma2_wsbioschemas.jsonld | 4 +- data/emmax/emmaxbioschemas.jsonld | 12 ++--- data/emowse/emowsebioschemas.jsonld | 16 +++--- .../empiricalbrownsmethodbioschemas.jsonld | 6 +-- data/empprior/emppriorbioschemas.jsonld | 26 +++++----- data/empusa/empusabioschemas.jsonld | 12 ++--- data/emvclass/emvclassbioschemas.jsonld | 8 +-- data/ena/enabioschemas.jsonld | 2 +- .../encodexplorerbioschemas.jsonld | 4 +- .../encyclopediabioschemas.jsonld | 4 +- data/endeavour/endeavourbioschemas.jsonld | 2 +- data/enetxplorer/enetxplorerbioschemas.jsonld | 18 +++---- data/enhancerdb/enhancerdbbioschemas.jsonld | 18 +++---- data/enigma/enigmabioschemas.jsonld | 4 +- data/enimpute/enimputebioschemas.jsonld | 4 +- data/enly/enlybioschemas.jsonld | 4 +- data/enmix/enmixbioschemas.jsonld | 26 +++++----- .../enrichedheatmapbioschemas.jsonld | 22 ++++---- data/enrichment/enrichmentbioschemas.jsonld | 4 +- .../enrichmentbrowserbioschemas.jsonld | 10 ++-- .../enrichmentmapbioschemas.jsonld | 4 +- data/enrichnet/enrichnetbioschemas.jsonld | 24 ++++----- data/enrichplot/enrichplotbioschemas.jsonld | 2 +- data/enrichr/enrichrbioschemas.jsonld | 4 +- data/ensembl/ensemblbioschemas.jsonld | 4 +- data/ensembl_api/ensembl_apibioschemas.jsonld | 2 +- .../ensembl_comparabioschemas.jsonld | 10 ++-- ...drosophila_genome_browserbioschemas.jsonld | 4 +- ...sembl_fugu_genome_browserbioschemas.jsonld | 4 +- .../ensembl_genomesbioschemas.jsonld | 4 +- ...bl_genomes_bacteria_blastbioschemas.jsonld | 4 +- ...eria_id_history_converterbioschemas.jsonld | 4 +- ..._bacteria_sequence_searchbioschemas.jsonld | 4 +- ..._fungi_assembly_converterbioschemas.jsonld | 4 +- ...sembl_genomes_fungi_blastbioschemas.jsonld | 4 +- ...genomes_fungi_data_slicerbioschemas.jsonld | 4 +- ...ungi_id_history_converterbioschemas.jsonld | 4 +- ...mes_fungi_sequence_searchbioschemas.jsonld | 4 +- ...nomes_metazoa_data_slicerbioschemas.jsonld | 4 +- ...azoa_id_history_converterbioschemas.jsonld | 4 +- ...s_metazoa_sequence_searchbioschemas.jsonld | 4 +- ...embl_genomes_plants_blastbioschemas.jsonld | 4 +- ...enomes_plants_data_slicerbioschemas.jsonld | 4 +- ...ants_id_history_converterbioschemas.jsonld | 2 +- ...es_plants_sequence_searchbioschemas.jsonld | 4 +- ...otists_assembly_converterbioschemas.jsonld | 4 +- ...bl_genomes_protists_blastbioschemas.jsonld | 4 +- ...omes_protists_data_slicerbioschemas.jsonld | 4 +- ...ists_id_history_converterbioschemas.jsonld | 4 +- ..._protists_sequence_searchbioschemas.jsonld | 4 +- ...nsembl_rat_genome_browserbioschemas.jsonld | 2 +- ...mbl_sequence_search_blastbioschemas.jsonld | 4 +- ..._variant_effect_predictorbioschemas.jsonld | 8 +-- ..._zebrafish_genome_browserbioschemas.jsonld | 4 +- data/ensembldb/ensembldbbioschemas.jsonld | 8 +-- .../ensemble_nmfbioschemas.jsonld | 4 +- data/ensembler/ensemblerbioschemas.jsonld | 14 +++--- data/ensemblvep/ensemblvepbioschemas.jsonld | 4 +- data/enterix/enterixbioschemas.jsonld | 4 +- .../enterotypingbioschemas.jsonld | 22 ++++---- data/entret/entretbioschemas.jsonld | 16 +++--- data/entrez/entrezbioschemas.jsonld | 24 ++++----- data/entrez_gene/entrez_genebioschemas.jsonld | 4 +- .../entrez_protein_clustersbioschemas.jsonld | 4 +- data/entrezpy/entrezpybioschemas.jsonld | 4 +- .../entropyexplorerbioschemas.jsonld | 16 +++--- data/envipat/envipatbioschemas.jsonld | 6 +-- .../envisionquerybioschemas.jsonld | 6 +-- data/enzyme/enzymebioschemas.jsonld | 4 +- .../enzyme_portalbioschemas.jsonld | 4 +- ...l_protein_sequence_searchbioschemas.jsonld | 4 +- ..._pipeline-reproducibilitybioschemas.jsonld | 4 +- data/ep3/ep3bioschemas.jsonld | 4 +- data/epa-ng/epa-ngbioschemas.jsonld | 18 +++---- data/epd/epdbioschemas.jsonld | 4 +- data/epestfind/epestfindbioschemas.jsonld | 12 ++--- data/epga/epgabioschemas.jsonld | 14 +++--- .../epi-peptide_designerbioschemas.jsonld | 4 +- data/epialign/epialignbioschemas.jsonld | 16 +++--- .../epialignmentbioschemas.jsonld | 14 +++--- data/epianno/epiannobioschemas.jsonld | 18 +++---- .../epiannotatorbioschemas.jsonld | 8 +-- data/epic-tabsat/epic-tabsatbioschemas.jsonld | 34 ++++++------- data/epicompare/epicomparebioschemas.jsonld | 4 +- data/epidish/epidishbioschemas.jsonld | 4 +- data/epig-seq/epig-seqbioschemas.jsonld | 6 +-- data/epigenomix/epigenomixbioschemas.jsonld | 4 +- data/epigraph/epigraphbioschemas.jsonld | 4 +- data/epilog/epilogbioschemas.jsonld | 4 +- data/epimethex/epimethexbioschemas.jsonld | 2 +- data/epimir/epimirbioschemas.jsonld | 10 ++-- data/epimodel/epimodelbioschemas.jsonld | 18 +++---- data/epinem/epinembioschemas.jsonld | 4 +- .../epiprofilelitebioschemas.jsonld | 18 +++---- data/episcanpy/episcanpybioschemas.jsonld | 4 +- data/epitad/epitadbioschemas.jsonld | 4 +- data/epivizr/epivizrbioschemas.jsonld | 4 +- .../epivizrchartbioschemas.jsonld | 4 +- data/epivizrdata/epivizrdatabioschemas.jsonld | 4 +- .../epivizrserverbioschemas.jsonld | 4 +- .../epivizrstandalonebioschemas.jsonld | 4 +- data/eplant/eplantbioschemas.jsonld | 16 +++--- data/epmv/epmvbioschemas.jsonld | 4 +- data/eponine/eponinebioschemas.jsonld | 4 +- data/epossum/epossumbioschemas.jsonld | 2 +- data/eprimer3/eprimer3bioschemas.jsonld | 18 +++---- data/eprimer32/eprimer32bioschemas.jsonld | 18 +++---- data/epsilon/epsilonbioschemas.jsonld | 2 +- data/eqtlbma/eqtlbmabioschemas.jsonld | 4 +- data/eqtnminer/eqtnminerbioschemas.jsonld | 4 +- .../equicktandembioschemas.jsonld | 10 ++-- .../equilibratorbioschemas.jsonld | 2 +- .../erccdashboardbioschemas.jsonld | 4 +- .../erdf_analyserbioschemas.jsonld | 4 +- data/erds/erdsbioschemas.jsonld | 4 +- data/erebus/erebusbioschemas.jsonld | 4 +- data/erga/ergabioschemas.jsonld | 4 +- data/erma/ermabioschemas.jsonld | 4 +- data/erminej/erminejbioschemas.jsonld | 4 +- data/erne/ernebioschemas.jsonld | 8 +-- data/eros-dock/eros-dockbioschemas.jsonld | 2 +- data/esap_plus/esap_plusbioschemas.jsonld | 8 +-- data/esatac/esatacbioschemas.jsonld | 6 +-- .../escape_excelbioschemas.jsonld | 4 +- data/escdb/escdbbioschemas.jsonld | 2 +- data/esefinder/esefinderbioschemas.jsonld | 6 +-- data/esetvis/esetvisbioschemas.jsonld | 8 +-- data/esimsa2d/esimsa2dbioschemas.jsonld | 4 +- data/esiprot/esiprotbioschemas.jsonld | 4 +- data/eslpred/eslpredbioschemas.jsonld | 4 +- data/esp/espbioschemas.jsonld | 8 +-- data/est2genome/est2genomebioschemas.jsonld | 6 +-- .../est2genome_ws_husarbioschemas.jsonld | 4 +- data/estscan/estscanbioschemas.jsonld | 2 +- .../et_report_makerbioschemas.jsonld | 4 +- data/etandem/etandembioschemas.jsonld | 10 ++-- data/etcal/etcalbioschemas.jsonld | 4 +- data/etox_allies/etox_alliesbioschemas.jsonld | 4 +- data/etriks/etriksbioschemas.jsonld | 2 +- data/eudysbiome/eudysbiomebioschemas.jsonld | 6 +-- data/eugene/eugenebioschemas.jsonld | 2 +- data/eugene_hom/eugene_hombioschemas.jsonld | 4 +- data/eugenes/eugenesbioschemas.jsonld | 4 +- data/euhcvdb/euhcvdbbioschemas.jsonld | 4 +- data/eupathdb/eupathdbbioschemas.jsonld | 4 +- data/eurisco/euriscobioschemas.jsonld | 14 +++--- data/eurocarbdb/eurocarbdbbioschemas.jsonld | 4 +- data/euroformix/euroformixbioschemas.jsonld | 4 +- data/europe_pmc/europe_pmcbioschemas.jsonld | 4 +- .../europe_pmc_orcid_toolbioschemas.jsonld | 4 +- ...pe_pmc_plus_grant_linkingbioschemas.jsonld | 6 +-- ...uscript_submission_systembioschemas.jsonld | 4 +- data/europepmc/europepmcbioschemas.jsonld | 4 +- data/europhenome/europhenomebioschemas.jsonld | 4 +- data/eva/evabioschemas.jsonld | 4 +- data/eva_inbred/eva_inbredbioschemas.jsonld | 4 +- data/evacon/evaconbioschemas.jsonld | 4 +- data/evag/evagbioschemas.jsonld | 4 +- .../eventpointerbioschemas.jsonld | 4 +- data/evex/evexbioschemas.jsonld | 4 +- .../evidence_finderbioschemas.jsonld | 4 +- data/evinet/evinetbioschemas.jsonld | 4 +- .../evlncrna-predbioschemas.jsonld | 4 +- data/evmutation/evmutationbioschemas.jsonld | 4 +- data/evodesign/evodesignbioschemas.jsonld | 4 +- data/evoker/evokerbioschemas.jsonld | 4 +- data/evolqg/evolqgbioschemas.jsonld | 18 +++---- data/evolview/evolviewbioschemas.jsonld | 4 +- data/evoppi/evoppibioschemas.jsonld | 40 +++++++-------- data/evoprinter/evoprinterbioschemas.jsonld | 4 +- data/evorha/evorhabioschemas.jsonld | 4 +- data/ewas/ewasbioschemas.jsonld | 8 +-- data/exac/exacbioschemas.jsonld | 18 +++---- data/exalign/exalignbioschemas.jsonld | 12 ++--- data/examine/examinebioschemas.jsonld | 4 +- data/excape-db/excape-dbbioschemas.jsonld | 2 +- data/excemplify/excemplifybioschemas.jsonld | 4 +- data/exibd/exibdbioschemas.jsonld | 12 ++--- data/eximir/eximirbioschemas.jsonld | 4 +- data/exms/exmsbioschemas.jsonld | 4 +- data/exocarta/exocartabioschemas.jsonld | 4 +- data/exolocator/exolocatorbioschemas.jsonld | 2 +- data/exomecnv/exomecnvbioschemas.jsonld | 4 +- data/exomecopy/exomecopybioschemas.jsonld | 8 +-- data/exomedepth/exomedepthbioschemas.jsonld | 22 ++++---- data/exomepeak/exomepeakbioschemas.jsonld | 16 +++--- data/exomiser/exomiserbioschemas.jsonld | 16 +++--- .../exon_array_analyzerbioschemas.jsonld | 4 +- data/expa/expabioschemas.jsonld | 4 +- data/expander/expanderbioschemas.jsonld | 4 +- data/exparna-p/exparna-pbioschemas.jsonld | 8 +-- data/exparna/exparnabioschemas.jsonld | 30 +++++------ data/expasy/expasybioschemas.jsonld | 4 +- data/expedition/expeditionbioschemas.jsonld | 4 +- .../experimenthubbioschemas.jsonld | 4 +- .../experimenthubdatabioschemas.jsonld | 4 +- data/explora/explorabioschemas.jsonld | 16 +++--- data/explorase/explorasebioschemas.jsonld | 4 +- data/export_sbw/export_sbwbioschemas.jsonld | 4 +- data/express/expressbioschemas.jsonld | 4 +- .../expression_atlasbioschemas.jsonld | 4 +- .../expressionatlasbioschemas.jsonld | 2 +- .../expressionviewbioschemas.jsonld | 4 +- data/expresso/expressobioschemas.jsonld | 4 +- .../expressyourselfbioschemas.jsonld | 2 +- data/expvip/expvipbioschemas.jsonld | 4 +- data/extract/extractbioschemas.jsonld | 16 +++--- .../extract_archive_mergebioschemas.jsonld | 4 +- .../extractalignbioschemas.jsonld | 14 +++--- .../extractcentralregionsbioschemas.jsonld | 4 +- data/extractfeat/extractfeatbioschemas.jsonld | 12 ++--- data/extractseq/extractseqbioschemas.jsonld | 16 +++--- data/faapred/faapredbioschemas.jsonld | 4 +- data/faas/faasbioschemas.jsonld | 12 ++--- data/fabia/fabiabioschemas.jsonld | 12 ++--- data/fabox/faboxbioschemas.jsonld | 4 +- data/facets/facetsbioschemas.jsonld | 8 +-- data/facopy/facopybioschemas.jsonld | 8 +-- data/facta_plus/facta_plusbioschemas.jsonld | 4 +- data/factdesign/factdesignbioschemas.jsonld | 4 +- .../fairdatapointbioschemas.jsonld | 18 +++---- data/falc-loop/falc-loopbioschemas.jsonld | 4 +- data/falcon/falconbioschemas.jsonld | 4 +- data/famagg/famaggbioschemas.jsonld | 12 ++--- data/fame/famebioschemas.jsonld | 4 +- data/famflm/famflmbioschemas.jsonld | 4 +- data/famplex/famplexbioschemas.jsonld | 4 +- .../fangorn_forestbioschemas.jsonld | 8 +-- data/fanmod/fanmodbioschemas.jsonld | 4 +- .../fantom_funannotmousebioschemas.jsonld | 4 +- data/fardeep/fardeepbioschemas.jsonld | 22 ++++---- data/farms/farmsbioschemas.jsonld | 12 ++--- data/fast-lmm/fast-lmmbioschemas.jsonld | 4 +- data/fasta/fastabioschemas.jsonld | 4 +- .../fasta_api_ebibioschemas.jsonld | 2 +- ...fasta_canonical_sequencesbioschemas.jsonld | 2 +- data/fasta_ebi/fasta_ebibioschemas.jsonld | 4 +- .../fastaextractbioschemas.jsonld | 4 +- .../fastafrombedbioschemas.jsonld | 4 +- data/fastbaps/fastbapsbioschemas.jsonld | 4 +- data/fastcontact/fastcontactbioschemas.jsonld | 2 +- data/fasteprr/fasteprrbioschemas.jsonld | 14 +++--- data/faster/fasterbioschemas.jsonld | 4 +- data/fastgenogam/fastgenogambioschemas.jsonld | 4 +- data/fasthmm/fasthmmbioschemas.jsonld | 2 +- data/fastjt/fastjtbioschemas.jsonld | 6 +-- .../fastliquidassociationbioschemas.jsonld | 4 +- .../fastm_api_ebibioschemas.jsonld | 4 +- data/fastm_ebi/fastm_ebibioschemas.jsonld | 8 +-- data/fastmap/fastmapbioschemas.jsonld | 4 +- data/fastme/fastmebioschemas.jsonld | 4 +- data/fasto/fastobioschemas.jsonld | 18 +++---- data/fastproject/fastprojectbioschemas.jsonld | 4 +- data/fastprongs/fastprongsbioschemas.jsonld | 20 ++++---- data/fastqc/fastqcbioschemas.jsonld | 4 +- .../fastqc_toolshedbioschemas.jsonld | 4 +- data/fastqpuri/fastqpuribioschemas.jsonld | 14 +++--- .../fastqvalidatorbioschemas.jsonld | 4 +- data/fastqz/fastqzbioschemas.jsonld | 4 +- data/fastr3d/fastr3dbioschemas.jsonld | 4 +- data/fastscop/fastscopbioschemas.jsonld | 4 +- data/fastseg/fastsegbioschemas.jsonld | 20 ++++---- data/fastskat/fastskatbioschemas.jsonld | 2 +- data/fasttree/fasttreebioschemas.jsonld | 4 +- .../fastx-toolkitbioschemas.jsonld | 4 +- data/fastxreader/fastxreaderbioschemas.jsonld | 4 +- data/fatcat/fatcatbioschemas.jsonld | 2 +- .../fathmm-indelbioschemas.jsonld | 2 +- data/fatslim/fatslimbioschemas.jsonld | 4 +- data/fccac/fccacbioschemas.jsonld | 16 +++--- data/fci/fcibioschemas.jsonld | 4 +- data/fdetect/fdetectbioschemas.jsonld | 4 +- data/fdrame/fdramebioschemas.jsonld | 4 +- data/featcopy/featcopybioschemas.jsonld | 14 +++--- data/feather/featherbioschemas.jsonld | 4 +- data/featmerge/featmergebioschemas.jsonld | 6 +-- data/featreport/featreportbioschemas.jsonld | 10 ++-- data/feattext/feattextbioschemas.jsonld | 14 +++--- .../featurecountsbioschemas.jsonld | 4 +- .../featureextractbioschemas.jsonld | 4 +- .../featuremap3dbioschemas.jsonld | 4 +- .../featureselectbioschemas.jsonld | 14 +++--- data/fedro/fedrobioschemas.jsonld | 20 ++++---- data/feedr/feedrbioschemas.jsonld | 4 +- data/feelnc/feelncbioschemas.jsonld | 16 +++--- data/fells/fellsbioschemas.jsonld | 16 +++--- data/fem/fembioschemas.jsonld | 6 +-- data/fetal_xcmr/fetal_xcmrbioschemas.jsonld | 8 +-- data/fetchprodom/fetchprodombioschemas.jsonld | 14 +++--- data/ffas/ffasbioschemas.jsonld | 2 +- data/ffbskat/ffbskatbioschemas.jsonld | 2 +- data/ffged/ffgedbioschemas.jsonld | 4 +- data/ffpe/ffpebioschemas.jsonld | 6 +-- data/fgap/fgapbioschemas.jsonld | 4 +- data/fgdb/fgdbbioschemas.jsonld | 4 +- data/fgdp/fgdpbioschemas.jsonld | 4 +- data/fgmp/fgmpbioschemas.jsonld | 4 +- data/fgnet/fgnetbioschemas.jsonld | 8 +-- data/fgsea/fgseabioschemas.jsonld | 8 +-- data/fhitings/fhitingsbioschemas.jsonld | 4 +- data/fidea/fideabioschemas.jsonld | 4 +- data/fidlib/fidlibbioschemas.jsonld | 2 +- data/fido-snp/fido-snpbioschemas.jsonld | 16 +++--- data/fidpd/fidpdbioschemas.jsonld | 4 +- data/figaro/figarobioschemas.jsonld | 4 +- data/figtree/figtreebioschemas.jsonld | 8 +-- data/filter/filterbioschemas.jsonld | 8 +-- .../filtercontrolbioschemas.jsonld | 4 +- data/fimtrack/fimtrackbioschemas.jsonld | 4 +- data/fimtyper/fimtyperbioschemas.jsonld | 6 +-- data/findbase/findbasebioschemas.jsonld | 4 +- data/findgeo/findgeobioschemas.jsonld | 2 +- data/findkm/findkmbioschemas.jsonld | 10 ++-- .../findmyfriendsbioschemas.jsonld | 8 +-- data/findpeaks/findpeaksbioschemas.jsonld | 2 +- data/findpept/findpeptbioschemas.jsonld | 4 +- .../findpromoterbioschemas.jsonld | 4 +- data/findzebra/findzebrabioschemas.jsonld | 4 +- data/finestr/finestrbioschemas.jsonld | 2 +- .../fingerprintscanbioschemas.jsonld | 8 +-- data/fire-pro/fire-probioschemas.jsonld | 4 +- data/firedb/firedbbioschemas.jsonld | 4 +- data/firedb_ws/firedb_wsbioschemas.jsonld | 4 +- data/firedock/firedockbioschemas.jsonld | 4 +- data/fireprot/fireprotbioschemas.jsonld | 16 +++--- data/firestar/firestarbioschemas.jsonld | 4 +- .../first_person_bioimagebioschemas.jsonld | 4 +- data/firstef/firstefbioschemas.jsonld | 4 +- data/firth_tools/firth_toolsbioschemas.jsonld | 2 +- .../fish_amyloidbioschemas.jsonld | 12 ++--- data/fish_finder/fish_finderbioschemas.jsonld | 2 +- data/fish_oracle/fish_oraclebioschemas.jsonld | 4 +- data/fishalyser/fishalyserbioschemas.jsonld | 12 ++--- data/fishplot/fishplotbioschemas.jsonld | 20 ++++---- data/fishresp/fishrespbioschemas.jsonld | 2 +- data/fit/fitbioschemas.jsonld | 4 +- data/fitchi/fitchibioschemas.jsonld | 2 +- data/fithic/fithicbioschemas.jsonld | 4 +- data/fitmunk/fitmunkbioschemas.jsonld | 4 +- data/fitom/fitombioschemas.jsonld | 4 +- data/fittetra/fittetrabioschemas.jsonld | 20 ++++---- data/fiview/fiviewbioschemas.jsonld | 4 +- data/fixseq/fixseqbioschemas.jsonld | 12 ++--- data/fizzy/fizzybioschemas.jsonld | 4 +- data/flad/fladbioschemas.jsonld | 4 +- data/flagme/flagmebioschemas.jsonld | 8 +-- data/flea/fleabioschemas.jsonld | 4 +- data/fledfold/fledfoldbioschemas.jsonld | 6 +-- data/flexbar/flexbarbioschemas.jsonld | 4 +- data/flexflux/flexfluxbioschemas.jsonld | 16 +++--- data/flexgsea/flexgseabioschemas.jsonld | 16 +++--- data/flexportal/flexportalbioschemas.jsonld | 4 +- data/flexpred/flexpredbioschemas.jsonld | 4 +- data/flexprot/flexprotbioschemas.jsonld | 2 +- data/flexserv/flexservbioschemas.jsonld | 4 +- data/flipflop/flipflopbioschemas.jsonld | 14 +++--- data/flippant/flippantbioschemas.jsonld | 18 +++---- data/flipper/flipperbioschemas.jsonld | 4 +- data/floremi/floremibioschemas.jsonld | 4 +- data/floss/flossbioschemas.jsonld | 4 +- data/flowai/flowaibioschemas.jsonld | 8 +-- data/flowand/flowandbioschemas.jsonld | 4 +- data/flowbeads/flowbeadsbioschemas.jsonld | 4 +- data/flowbin/flowbinbioschemas.jsonld | 4 +- data/flowcal/flowcalbioschemas.jsonld | 16 +++--- data/flowcatchr/flowcatchrbioschemas.jsonld | 4 +- data/flowchic/flowchicbioschemas.jsonld | 8 +-- data/flowcl/flowclbioschemas.jsonld | 4 +- data/flowclean/flowcleanbioschemas.jsonld | 8 +-- data/flowclust/flowclustbioschemas.jsonld | 4 +- data/flowcore/flowcorebioschemas.jsonld | 8 +-- data/flowcybar/flowcybarbioschemas.jsonld | 4 +- data/flowdensity/flowdensitybioschemas.jsonld | 4 +- data/flowdiv/flowdivbioschemas.jsonld | 16 +++--- data/flowfit/flowfitbioschemas.jsonld | 8 +-- data/flowfp/flowfpbioschemas.jsonld | 8 +-- data/flowmap/flowmapbioschemas.jsonld | 4 +- data/flowmatch/flowmatchbioschemas.jsonld | 2 +- data/flowmeans/flowmeansbioschemas.jsonld | 8 +-- data/flowmerge/flowmergebioschemas.jsonld | 8 +-- data/flowpeaks/flowpeaksbioschemas.jsonld | 16 +++--- data/flowploidy/flowploidybioschemas.jsonld | 4 +- data/flowplots/flowplotsbioschemas.jsonld | 4 +- data/flowq/flowqbioschemas.jsonld | 6 +-- data/flowqb/flowqbbioschemas.jsonld | 4 +- .../flowrepositoryrbioschemas.jsonld | 8 +-- data/flowsom/flowsombioschemas.jsonld | 4 +- data/flowstats/flowstatsbioschemas.jsonld | 6 +-- data/flowtime/flowtimebioschemas.jsonld | 4 +- data/flowtrans/flowtransbioschemas.jsonld | 8 +-- data/flowtype/flowtypebioschemas.jsonld | 8 +-- data/flowutils/flowutilsbioschemas.jsonld | 8 +-- data/flowviz/flowvizbioschemas.jsonld | 4 +- data/flowvs/flowvsbioschemas.jsonld | 4 +- .../flowworkspacebioschemas.jsonld | 8 +-- .../fluevidencesynthesisbioschemas.jsonld | 4 +- data/fluff/fluffbioschemas.jsonld | 16 +++--- .../fluorocelltrackbioschemas.jsonld | 14 +++--- data/fluxmap/fluxmapbioschemas.jsonld | 2 +- .../fluxmodecalculatorbioschemas.jsonld | 4 +- data/fluxpyt/fluxpytbioschemas.jsonld | 4 +- data/fluxviz/fluxvizbioschemas.jsonld | 4 +- data/flybase/flybasebioschemas.jsonld | 4 +- .../flyfactorsurveybioschemas.jsonld | 4 +- data/flymine/flyminebioschemas.jsonld | 8 +-- data/flyode/flyodebioschemas.jsonld | 28 +++++------ data/flyrnai/flyrnaibioschemas.jsonld | 4 +- data/flytf/flytfbioschemas.jsonld | 4 +- data/fmm/fmmbioschemas.jsonld | 4 +- data/fnbtools/fnbtoolsbioschemas.jsonld | 4 +- data/fnv/fnvbioschemas.jsonld | 2 +- data/focal/focalbioschemas.jsonld | 4 +- data/focalcall/focalcallbioschemas.jsonld | 2 +- data/focus-point/focus-pointbioschemas.jsonld | 4 +- data/focusedmds/focusedmdsbioschemas.jsonld | 4 +- data/fodis/fodisbioschemas.jsonld | 4 +- data/fog/fogbioschemas.jsonld | 4 +- data/fold-rate/fold-ratebioschemas.jsonld | 4 +- .../foldhandednessbioschemas.jsonld | 4 +- .../foldit_standalonebioschemas.jsonld | 4 +- data/foldnucleus/foldnucleusbioschemas.jsonld | 2 +- data/foldx/foldxbioschemas.jsonld | 8 +-- data/footer/footerbioschemas.jsonld | 4 +- data/fopa/fopabioschemas.jsonld | 4 +- .../forcefield_ncaabioschemas.jsonld | 4 +- .../forcefield_ptmbioschemas.jsonld | 4 +- data/forecast/forecastbioschemas.jsonld | 6 +-- data/foresee/foreseebioschemas.jsonld | 2 +- data/forester/foresterbioschemas.jsonld | 4 +- data/forge/forgebioschemas.jsonld | 4 +- data/forgi/forgibioschemas.jsonld | 18 +++---- .../formatomaticbioschemas.jsonld | 4 +- data/forna/fornabioschemas.jsonld | 28 +++++------ data/forwsim/forwsimbioschemas.jsonld | 4 +- .../founder_sequencesbioschemas.jsonld | 20 ++++---- .../foundertrackerbioschemas.jsonld | 4 +- data/fourcseq/fourcseqbioschemas.jsonld | 20 ++++---- data/foxs/foxsbioschemas.jsonld | 4 +- data/fp2vec/fp2vecbioschemas.jsonld | 4 +- data/fpb/fpbbioschemas.jsonld | 4 +- data/fpbase/fpbasebioschemas.jsonld | 4 +- data/fpbioimage/fpbioimagebioschemas.jsonld | 2 +- data/fpc/fpcbioschemas.jsonld | 4 +- data/fpclass/fpclassbioschemas.jsonld | 4 +- data/fpocket/fpocketbioschemas.jsonld | 8 +-- data/fpsac/fpsacbioschemas.jsonld | 4 +- data/fqconvert/fqconvertbioschemas.jsonld | 4 +- data/fractalsim/fractalsimbioschemas.jsonld | 4 +- data/fractbias/fractbiasbioschemas.jsonld | 4 +- data/fragfit/fragfitbioschemas.jsonld | 4 +- data/fraghmment/fraghmmentbioschemas.jsonld | 4 +- .../fragmentationanalyzerbioschemas.jsonld | 4 +- .../fragmentstorebioschemas.jsonld | 10 ++-- data/fragrus/fragrusbioschemas.jsonld | 2 +- data/frama/framabioschemas.jsonld | 10 ++-- data/framed/framedbioschemas.jsonld | 4 +- data/framedp/framedpbioschemas.jsonld | 10 ++-- data/fread/freadbioschemas.jsonld | 4 +- data/freak/freakbioschemas.jsonld | 12 ++--- data/freclu/freclubioschemas.jsonld | 4 +- data/fred/fredbioschemas.jsonld | 4 +- data/freec/freecbioschemas.jsonld | 8 +-- data/freect_wfbp/freect_wfbpbioschemas.jsonld | 14 +++--- data/freesasa/freesasabioschemas.jsonld | 8 +-- data/fregat/fregatbioschemas.jsonld | 2 +- .../freiburg_rna_toolsbioschemas.jsonld | 8 +-- data/fresco/frescobioschemas.jsonld | 4 +- data/fretbursts/fretburstsbioschemas.jsonld | 14 +++--- .../frgepistasisbioschemas.jsonld | 22 ++++---- data/frida/fridabioschemas.jsonld | 16 +++--- data/friend/friendbioschemas.jsonld | 4 +- data/frma/frmabioschemas.jsonld | 4 +- data/frmatools/frmatoolsbioschemas.jsonld | 8 +-- data/frog/frogbioschemas.jsonld | 4 +- data/frog2/frog2bioschemas.jsonld | 4 +- .../frogs_affiliation_otubioschemas.jsonld | 4 +- .../frogs_affiliations_statbioschemas.jsonld | 4 +- .../frogs_biom_to_stdbiombioschemas.jsonld | 2 +- .../frogs_biom_to_tsvbioschemas.jsonld | 4 +- .../frogs_clusteringbioschemas.jsonld | 4 +- .../frogs_clusters_statbioschemas.jsonld | 4 +- .../frogs_demultiplexbioschemas.jsonld | 4 +- .../frogs_normalisationbioschemas.jsonld | 4 +- .../frogs_preprocessbioschemas.jsonld | 4 +- .../frogs_remove_chimerabioschemas.jsonld | 4 +- data/fromp/frompbioschemas.jsonld | 4 +- data/frst/frstbioschemas.jsonld | 4 +- data/fstval/fstvalbioschemas.jsonld | 10 ++-- data/fsuite/fsuitebioschemas.jsonld | 4 +- data/fsweight/fsweightbioschemas.jsonld | 4 +- data/ft-comar/ft-comarbioschemas.jsonld | 2 +- data/ftmap/ftmapbioschemas.jsonld | 4 +- data/ftprod/ftprodbioschemas.jsonld | 4 +- data/fuento/fuentobioschemas.jsonld | 8 +-- data/fugue/fuguebioschemas.jsonld | 4 +- data/fuma/fumabioschemas.jsonld | 4 +- data/fun/funbioschemas.jsonld | 4 +- .../funcassociatebioschemas.jsonld | 4 +- data/funcepimod/funcepimodbioschemas.jsonld | 4 +- .../funcexplorerbioschemas.jsonld | 4 +- data/funchip/funchipbioschemas.jsonld | 4 +- data/funcisnp/funcisnpbioschemas.jsonld | 8 +-- data/funcluster/funclusterbioschemas.jsonld | 2 +- data/funcoup/funcoupbioschemas.jsonld | 4 +- data/funcpatch/funcpatchbioschemas.jsonld | 4 +- data/funcprop/funcpropbioschemas.jsonld | 4 +- .../functional_heatmapbioschemas.jsonld | 8 +-- .../functionannotatorbioschemas.jsonld | 4 +- data/functree/functreebioschemas.jsonld | 8 +-- data/funel/funelbioschemas.jsonld | 4 +- data/funfold2/funfold2bioschemas.jsonld | 4 +- data/fungap/fungapbioschemas.jsonld | 4 +- data/fungenes/fungenesbioschemas.jsonld | 4 +- data/fungifun/fungifunbioschemas.jsonld | 8 +-- data/funmap/funmapbioschemas.jsonld | 6 +-- data/funmap2/funmap2bioschemas.jsonld | 16 +++--- data/funmappone/funmapponebioschemas.jsonld | 4 +- data/funpat/funpatbioschemas.jsonld | 4 +- data/funsip/funsipbioschemas.jsonld | 8 +-- data/funsys/funsysbioschemas.jsonld | 4 +- data/funtaxis/funtaxisbioschemas.jsonld | 4 +- data/funtoonorm/funtoonormbioschemas.jsonld | 4 +- data/funtree/funtreebioschemas.jsonld | 4 +- data/fusenet/fusenetbioschemas.jsonld | 4 +- data/fusion/fusionbioschemas.jsonld | 4 +- .../fusion_proteinbioschemas.jsonld | 4 +- .../fusionhunterbioschemas.jsonld | 4 +- data/fusionmap/fusionmapbioschemas.jsonld | 4 +- data/fusionseq/fusionseqbioschemas.jsonld | 4 +- data/fusorsv/fusorsvbioschemas.jsonld | 28 +++++------ data/fuzznuc/fuzznucbioschemas.jsonld | 8 +-- data/fuzzpro/fuzzprobioschemas.jsonld | 16 +++--- data/fuzztran/fuzztranbioschemas.jsonld | 10 ++-- data/fuzzyclust/fuzzyclustbioschemas.jsonld | 10 ++-- data/g-blastn/g-blastnbioschemas.jsonld | 4 +- .../g-language_apibioschemas.jsonld | 4 +- .../g-language_gaebioschemas.jsonld | 4 +- data/g-links/g-linksbioschemas.jsonld | 10 ++-- data/g-onramp/g-onrampbioschemas.jsonld | 8 +-- data/g-sesame/g-sesamebioschemas.jsonld | 4 +- data/g-sqz/g-sqzbioschemas.jsonld | 4 +- data/g2d/g2dbioschemas.jsonld | 4 +- data/g2p/g2pbioschemas.jsonld | 4 +- data/g3viz/g3vizbioschemas.jsonld | 4 +- .../ga4gh_beaconbioschemas.jsonld | 8 +-- data/ga4ghclient/ga4ghclientbioschemas.jsonld | 4 +- data/ga4ghshiny/ga4ghshinybioschemas.jsonld | 4 +- data/gadem/gadembioschemas.jsonld | 4 +- data/gads/gadsbioschemas.jsonld | 4 +- data/gaev/gaevbioschemas.jsonld | 4 +- data/gag/gagbioschemas.jsonld | 2 +- data/gag_builder/gag_builderbioschemas.jsonld | 4 +- data/gaga/gagabioschemas.jsonld | 4 +- data/gage/gagebioschemas.jsonld | 10 ++-- data/gaggle/gagglebioschemas.jsonld | 6 +-- data/gaia/gaiabioschemas.jsonld | 4 +- ...tosemia_proteins_databasebioschemas.jsonld | 2 +- data/galaxy/galaxybioschemas.jsonld | 4 +- .../galaxy_australiabioschemas.jsonld | 4 +- .../galaxy_toolsbioschemas.jsonld | 4 +- data/galaxydock/galaxydockbioschemas.jsonld | 4 +- .../galaxyhomomerbioschemas.jsonld | 26 +++++----- .../galaxyrefinebioschemas.jsonld | 4 +- data/galaxysite/galaxysitebioschemas.jsonld | 4 +- data/gametes/gametesbioschemas.jsonld | 4 +- data/gaml/gamlbioschemas.jsonld | 8 +-- data/gamola2/gamola2bioschemas.jsonld | 4 +- data/gamp/gampbioschemas.jsonld | 4 +- data/ganesh/ganeshbioschemas.jsonld | 4 +- data/gap/gapbioschemas.jsonld | 2 +- data/gapit/gapitbioschemas.jsonld | 4 +- data/gapp/gappbioschemas.jsonld | 8 +-- .../gapredictionbioschemas.jsonld | 4 +- data/gapsplit/gapsplitbioschemas.jsonld | 4 +- data/garfield/garfieldbioschemas.jsonld | 6 +-- .../garlic_homozygositybioschemas.jsonld | 4 +- data/garn/garnbioschemas.jsonld | 8 +-- data/garnier/garnierbioschemas.jsonld | 8 +-- data/gars/garsbioschemas.jsonld | 2 +- data/gasoline/gasolinebioschemas.jsonld | 18 +++---- data/gass-web/gass-webbioschemas.jsonld | 12 ++--- data/gasv/gasvbioschemas.jsonld | 4 +- data/gat/gatbioschemas.jsonld | 4 +- data/gatb/gatbbioschemas.jsonld | 4 +- data/gatekeeper/gatekeeperbioschemas.jsonld | 4 +- data/gatk-lodn/gatk-lodnbioschemas.jsonld | 22 ++++---- data/gatk/gatkbioschemas.jsonld | 4 +- .../gatk_base_recalibratorbioschemas.jsonld | 4 +- .../gatk_depth_of_coveragebioschemas.jsonld | 4 +- .../gatk_haplotype_callerbioschemas.jsonld | 4 +- .../gatk_indel_realignerbioschemas.jsonld | 4 +- .../gatk_print_readsbioschemas.jsonld | 4 +- ..._realigner_target_creatorbioschemas.jsonld | 4 +- .../gatk_reduce_readsbioschemas.jsonld | 4 +- .../gatk_unified_genotyperbioschemas.jsonld | 4 +- .../gatk_validate_variantsbioschemas.jsonld | 2 +- .../gatk_variant_annotatorbioschemas.jsonld | 2 +- ...riant_apply_recalibrationbioschemas.jsonld | 4 +- .../gatk_variant_combinebioschemas.jsonld | 4 +- .../gatk_variant_evalbioschemas.jsonld | 2 +- .../gatk_variant_filtrationbioschemas.jsonld | 2 +- ...gatk_variant_recalibratorbioschemas.jsonld | 4 +- .../gatk_variant_selectbioschemas.jsonld | 4 +- data/gaucho/gauchobioschemas.jsonld | 4 +- data/gazepath/gazepathbioschemas.jsonld | 14 +++--- .../gbif_occurrence_wsbioschemas.jsonld | 4 +- .../gbif_taxon_wsbioschemas.jsonld | 4 +- data/gbis/gbisbioschemas.jsonld | 4 +- data/gboosting/gboostingbioschemas.jsonld | 4 +- data/gbrowse/gbrowsebioschemas.jsonld | 4 +- data/gc-profile/gc-profilebioschemas.jsonld | 4 +- data/gcac/gcacbioschemas.jsonld | 4 +- data/gcalignr/gcalignrbioschemas.jsonld | 16 +++--- data/gcapc/gcapcbioschemas.jsonld | 4 +- data/gcatest/gcatestbioschemas.jsonld | 4 +- data/gcmapweb/gcmapwebbioschemas.jsonld | 8 +-- data/gcocoa/gcocoabioschemas.jsonld | 2 +- data/gcontrol/gcontrolbioschemas.jsonld | 4 +- data/gconvert/gconvertbioschemas.jsonld | 4 +- data/gcpred/gcpredbioschemas.jsonld | 8 +-- .../gcrisprtoolsbioschemas.jsonld | 2 +- data/gcrma/gcrmabioschemas.jsonld | 4 +- data/gcta/gctabioschemas.jsonld | 4 +- data/gcua/gcuabioschemas.jsonld | 4 +- data/gcup/gcupbioschemas.jsonld | 4 +- data/gdap/gdapbioschemas.jsonld | 2 +- data/gdc/gdcbioschemas.jsonld | 4 +- data/gdcrnatools/gdcrnatoolsbioschemas.jsonld | 2 +- data/gdfuzz3d/gdfuzz3dbioschemas.jsonld | 4 +- data/gdhc/gdhcbioschemas.jsonld | 4 +- data/gdr/gdrbioschemas.jsonld | 4 +- data/gdsctools/gdsctoolsbioschemas.jsonld | 8 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data/gedevo-m/gedevo-mbioschemas.jsonld | 4 +- data/gedevo/gedevobioschemas.jsonld | 2 +- data/geecc/geeccbioschemas.jsonld | 4 +- data/geecee/geeceebioschemas.jsonld | 8 +-- data/geist/geistbioschemas.jsonld | 2 +- data/gell/gellbioschemas.jsonld | 4 +- .../gelscape_and_gelbankbioschemas.jsonld | 4 +- data/gem-trend/gem-trendbioschemas.jsonld | 4 +- data/gem/gembioschemas.jsonld | 42 ++++++++-------- data/gem3/gem3bioschemas.jsonld | 8 +-- data/gemma/gemmabioschemas.jsonld | 4 +- data/gemmapper/gemmapperbioschemas.jsonld | 4 +- data/gemmer/gemmerbioschemas.jsonld | 2 +- data/gemoma/gemomabioschemas.jsonld | 4 +- data/gemreads/gemreadsbioschemas.jsonld | 4 +- data/gems/gemsbioschemas.jsonld | 4 +- .../gems_diseasebioschemas.jsonld | 6 +-- data/gemse/gemsebioschemas.jsonld | 2 +- data/gemstone/gemstonebioschemas.jsonld | 10 ++-- data/gemtools/gemtoolsbioschemas.jsonld | 8 +-- .../gemtools_ancestrybioschemas.jsonld | 4 +- data/gen3d/gen3dbioschemas.jsonld | 4 +- data/gen3va/gen3vabioschemas.jsonld | 26 +++++----- data/genabel/genabelbioschemas.jsonld | 8 +-- data/genarise/genarisebioschemas.jsonld | 4 +- data/genatlas/genatlasbioschemas.jsonld | 4 +- data/genatlasdb/genatlasdbbioschemas.jsonld | 12 ++--- data/genbank/genbankbioschemas.jsonld | 4 +- .../genbank2gff3bioschemas.jsonld | 4 +- .../genbank_to_genebioschemas.jsonld | 4 +- data/genbankr/genbankrbioschemas.jsonld | 8 +-- data/genclip/genclipbioschemas.jsonld | 4 +- data/genclust/genclustbioschemas.jsonld | 4 +- data/gencode/gencodebioschemas.jsonld | 8 +-- data/gendbe/gendbebioschemas.jsonld | 16 +++--- data/gendoo/gendoobioschemas.jsonld | 4 +- data/gene-clic/gene-clicbioschemas.jsonld | 8 +-- .../gene-counterbioschemas.jsonld | 4 +- data/gene2drug/gene2drugbioschemas.jsonld | 4 +- data/gene2oligo/gene2oligobioschemas.jsonld | 4 +- data/gene2vec/gene2vecbioschemas.jsonld | 12 ++--- .../gene_array_analyzerbioschemas.jsonld | 4 +- .../gene_expressionbioschemas.jsonld | 4 +- .../gene_expression_atlasbioschemas.jsonld | 4 +- .../gene_expression_barcodebioschemas.jsonld | 4 +- .../gene_graphicsbioschemas.jsonld | 8 +-- .../gene_machinebioschemas.jsonld | 4 +- .../gene_sculpt_suitebioschemas.jsonld | 20 ++++---- .../gene_set_builderbioschemas.jsonld | 4 +- .../gene_set_to_diseasesbioschemas.jsonld | 6 +-- .../gene_stackerbioschemas.jsonld | 4 +- data/geneanswers/geneanswersbioschemas.jsonld | 8 +-- data/genease/geneasebioschemas.jsonld | 4 +- .../geneattributionbioschemas.jsonld | 4 +- data/genebase/genebasebioschemas.jsonld | 2 +- data/genebreak/genebreakbioschemas.jsonld | 8 +-- data/genecards/genecardsbioschemas.jsonld | 4 +- data/genecite/genecitebioschemas.jsonld | 4 +- data/geneck/geneckbioschemas.jsonld | 10 ++-- .../geneclassifiersbioschemas.jsonld | 2 +- data/geneclust/geneclustbioschemas.jsonld | 4 +- data/genecodis3/genecodis3bioschemas.jsonld | 4 +- data/genedb/genedbbioschemas.jsonld | 4 +- .../genedistillerbioschemas.jsonld | 8 +-- .../geneexprdataanalyzerbioschemas.jsonld | 4 +- .../geneexpressionsignaturebioschemas.jsonld | 4 +- data/genefas/genefasbioschemas.jsonld | 4 +- data/genefilter/genefilterbioschemas.jsonld | 8 +-- data/genefisher/genefisherbioschemas.jsonld | 4 +- data/genefisher2/genefisher2bioschemas.jsonld | 16 +++--- data/genefu/genefubioschemas.jsonld | 2 +- data/genega/genegabioschemas.jsonld | 4 +- .../genegeneinterbioschemas.jsonld | 12 ++--- data/genegenie/genegeniebioschemas.jsonld | 2 +- data/genehummus/genehummusbioschemas.jsonld | 16 +++--- data/geneid/geneidbioschemas.jsonld | 20 ++++---- data/geneimprint/geneimprintbioschemas.jsonld | 8 +-- data/geneious/geneiousbioschemas.jsonld | 4 +- data/genemania/genemaniabioschemas.jsonld | 2 +- data/genemark/genemarkbioschemas.jsonld | 8 +-- data/genematcher/genematcherbioschemas.jsonld | 4 +- data/genemeta/genemetabioschemas.jsonld | 8 +-- data/genenet/genenetbioschemas.jsonld | 4 +- .../genenet_toolboxbioschemas.jsonld | 4 +- data/genenetval/genenetvalbioschemas.jsonld | 4 +- .../genenetworkbuilderbioschemas.jsonld | 4 +- data/geneoverlap/geneoverlapbioschemas.jsonld | 4 +- data/genepainter/genepainterbioschemas.jsonld | 4 +- data/genepalette/genepalettebioschemas.jsonld | 4 +- data/genepattern/genepatternbioschemas.jsonld | 8 +-- .../genepattern_notebookbioschemas.jsonld | 24 ++++----- data/geneplast/geneplastbioschemas.jsonld | 4 +- data/genepopedit/genepopeditbioschemas.jsonld | 4 +- data/geneprof/geneprofbioschemas.jsonld | 4 +- .../generecommenderbioschemas.jsonld | 8 +-- data/generecon/genereconbioschemas.jsonld | 4 +- .../generegionscanbioschemas.jsonld | 18 +++---- .../generxclusterbioschemas.jsonld | 12 ++--- .../genes2wordcloudbioschemas.jsonld | 4 +- ...enes_by_isoelectric_pointbioschemas.jsonld | 4 +- data/geneseeker/geneseekerbioschemas.jsonld | 4 +- .../geneselectmmdbioschemas.jsonld | 8 +-- .../geneselectorbioschemas.jsonld | 2 +- data/geneseqer/geneseqerbioschemas.jsonld | 4 +- .../geneseqtofamilybioschemas.jsonld | 4 +- data/geneshelf/geneshelfbioschemas.jsonld | 4 +- data/geneshot/geneshotbioschemas.jsonld | 18 +++---- data/genesigdb/genesigdbbioschemas.jsonld | 4 +- data/genesilico/genesilicobioschemas.jsonld | 4 +- data/genesis/genesisbioschemas.jsonld | 8 +-- .../genesis_microarraybioschemas.jsonld | 4 +- data/genesmash/genesmashbioschemas.jsonld | 4 +- data/genesnps/genesnpsbioschemas.jsonld | 4 +- data/genestitch/genestitchbioschemas.jsonld | 4 +- .../genestructuretoolsbioschemas.jsonld | 4 +- .../genesurrounderbioschemas.jsonld | 20 ++++---- data/genesysv/genesysvbioschemas.jsonld | 14 +++--- data/genetalk/genetalkbioschemas.jsonld | 4 +- .../genetclassifierbioschemas.jsonld | 30 +++++------ data/genetests/genetestsbioschemas.jsonld | 4 +- .../genetic_revisionbioschemas.jsonld | 4 +- .../geneticsdesignbioschemas.jsonld | 8 +-- data/geneticsped/geneticspedbioschemas.jsonld | 6 +-- data/genetier/genetierbioschemas.jsonld | 4 +- data/genetrail/genetrailbioschemas.jsonld | 4 +- data/genetrail2/genetrail2bioschemas.jsonld | 8 +-- data/genetree/genetreebioschemas.jsonld | 4 +- .../genevalidatorbioschemas.jsonld | 28 +++++------ .../genevestigatorbioschemas.jsonld | 4 +- data/genevetter/genevetterbioschemas.jsonld | 16 +++--- data/geneview/geneviewbioschemas.jsonld | 2 +- data/geneweaver/geneweaverbioschemas.jsonld | 4 +- data/genewise/genewisebioschemas.jsonld | 4 +- data/genexpi/genexpibioschemas.jsonld | 14 +++--- data/genextender/genextenderbioschemas.jsonld | 4 +- data/geneyenta/geneyentabioschemas.jsonld | 12 ++--- data/genezilla/genezillabioschemas.jsonld | 4 +- data/geniatagger/geniataggerbioschemas.jsonld | 4 +- data/genie/geniebioschemas.jsonld | 4 +- data/genie3/genie3bioschemas.jsonld | 4 +- data/genie_cbdm/genie_cbdmbioschemas.jsonld | 4 +- data/genio/geniobioschemas.jsonld | 16 +++--- data/genlib/genlibbioschemas.jsonld | 16 +++--- data/genmr/genmrbioschemas.jsonld | 4 +- data/genn/gennbioschemas.jsonld | 10 ++-- data/gennon-h/gennon-hbioschemas.jsonld | 12 ++--- data/geno2pheno/geno2phenobioschemas.jsonld | 4 +- data/genocn/genocnbioschemas.jsonld | 2 +- data/genocrypt/genocryptbioschemas.jsonld | 2 +- data/genogam/genogambioschemas.jsonld | 4 +- data/genolist/genolistbioschemas.jsonld | 24 ++++----- data/genoma/genomabioschemas.jsonld | 8 +-- data/genomation/genomationbioschemas.jsonld | 10 ++-- .../genomatix_genegridbioschemas.jsonld | 8 +-- .../genome_artistbioschemas.jsonld | 6 +-- .../genome_classifierbioschemas.jsonld | 4 +- data/genome_maps/genome_mapsbioschemas.jsonld | 8 +-- .../genome_projectorbioschemas.jsonld | 4 +- data/genome_trax/genome_traxbioschemas.jsonld | 4 +- .../genome_uplotbioschemas.jsonld | 4 +- .../genomebrowsebioschemas.jsonld | 4 +- .../genomecrisprbioschemas.jsonld | 16 +++--- .../genomed3plotbioschemas.jsonld | 4 +- data/genomedata/genomedatabioschemas.jsonld | 4 +- data/genomedisco/genomediscobioschemas.jsonld | 4 +- data/genomeflow/genomeflowbioschemas.jsonld | 4 +- .../genomegraphsbioschemas.jsonld | 8 +-- .../genomeinfodbbioschemas.jsonld | 4 +- .../genomeintervalsbioschemas.jsonld | 8 +-- .../genomemaskerbioschemas.jsonld | 4 +- data/genomenet/genomenetbioschemas.jsonld | 4 +- .../genomepartitionerbioschemas.jsonld | 8 +-- data/genomernai/genomernaibioschemas.jsonld | 6 +-- data/genomes/genomesbioschemas.jsonld | 2 +- .../genometesterbioschemas.jsonld | 4 +- data/genometools/genometoolsbioschemas.jsonld | 4 +- .../genometrafacbioschemas.jsonld | 4 +- .../genometricorrbioschemas.jsonld | 18 +++---- data/genomeview/genomeviewbioschemas.jsonld | 4 +- .../genomicalignmentsbioschemas.jsonld | 12 ++--- .../genomicdatacommonsbioschemas.jsonld | 2 +- .../genomicfeaturesbioschemas.jsonld | 28 +++++------ .../genomicfilesbioschemas.jsonld | 4 +- .../genomicinteractionsbioschemas.jsonld | 4 +- .../genomicrangesbioschemas.jsonld | 2 +- .../genomics_virtual_labbioschemas.jsonld | 4 +- .../genomictuplesbioschemas.jsonld | 8 +-- data/genomicus/genomicusbioschemas.jsonld | 20 ++++---- data/genominator/genominatorbioschemas.jsonld | 4 +- data/genomix/genomixbioschemas.jsonld | 4 +- data/genomorama/genomoramabioschemas.jsonld | 4 +- data/genonets/genonetsbioschemas.jsonld | 8 +-- data/genosa/genosabioschemas.jsonld | 4 +- data/genoset/genosetbioschemas.jsonld | 4 +- data/genotom/genotombioschemas.jsonld | 4 +- .../genotypeevalbioschemas.jsonld | 4 +- data/genovar/genovarbioschemas.jsonld | 4 +- data/genowap/genowapbioschemas.jsonld | 2 +- data/genphen/genphenbioschemas.jsonld | 4 +- data/genprobis/genprobisbioschemas.jsonld | 8 +-- data/gens/gensbioschemas.jsonld | 4 +- data/genscalpel/genscalpelbioschemas.jsonld | 4 +- data/genscan/genscanbioschemas.jsonld | 2 +- .../gensearchngsbioschemas.jsonld | 4 +- data/genskew/genskewbioschemas.jsonld | 8 +-- data/genssi/genssibioschemas.jsonld | 4 +- data/gentree/gentreebioschemas.jsonld | 22 ++++---- data/genvisr/genvisrbioschemas.jsonld | 12 ++--- data/geodis/geodisbioschemas.jsonld | 4 +- data/geometadb/geometadbbioschemas.jsonld | 16 +++--- data/geometree/geometreebioschemas.jsonld | 4 +- data/geoquery/geoquerybioschemas.jsonld | 4 +- data/geosearch/geosearchbioschemas.jsonld | 8 +-- .../geosubmissionbioschemas.jsonld | 4 +- data/gep2pep/gep2pepbioschemas.jsonld | 4 +- data/gepard/gepardbioschemas.jsonld | 4 +- data/gepat/gepatbioschemas.jsonld | 4 +- data/gephex/gephexbioschemas.jsonld | 4 +- data/gepia/gepiabioschemas.jsonld | 8 +-- .../germ-line_v_genesbioschemas.jsonld | 4 +- data/germonline/germonlinebioschemas.jsonld | 2 +- data/geross/gerossbioschemas.jsonld | 2 +- data/geseq/geseqbioschemas.jsonld | 16 +++--- data/gespa/gespabioschemas.jsonld | 8 +-- data/gesper/gesperbioschemas.jsonld | 8 +-- data/gess/gessbioschemas.jsonld | 8 +-- .../getdifferencebioschemas.jsonld | 4 +- ...getdifferentialexpressionbioschemas.jsonld | 4 +- data/getdistance/getdistancebioschemas.jsonld | 4 +- .../getdistributionbioschemas.jsonld | 2 +- data/getexons/getexonsbioschemas.jsonld | 2 +- data/getflanking/getflankingbioschemas.jsonld | 4 +- data/getintrons/getintronsbioschemas.jsonld | 4 +- .../getletterdistribution1bioschemas.jsonld | 4 +- data/getnumber/getnumberbioschemas.jsonld | 4 +- data/getorf/getorfbioschemas.jsonld | 14 +++--- .../getreaddistributionbioschemas.jsonld | 4 +- data/getsequence/getsequencebioschemas.jsonld | 2 +- data/getsizes/getsizesbioschemas.jsonld | 4 +- data/getwigdata/getwigdatabioschemas.jsonld | 4 +- .../getwigdistancebioschemas.jsonld | 4 +- .../getwigprofilebioschemas.jsonld | 4 +- data/gfapy/gfapybioschemas.jsonld | 8 +-- data/gfasparse/gfasparsebioschemas.jsonld | 4 +- data/gfbio/gfbiobioschemas.jsonld | 6 +-- data/gff-ex/gff-exbioschemas.jsonld | 14 +++--- data/gffcompare/gffcomparebioschemas.jsonld | 4 +- data/gflasso/gflassobioschemas.jsonld | 4 +- data/gfsat/gfsatbioschemas.jsonld | 8 +-- data/gganatogram/gganatogrambioschemas.jsonld | 20 ++++---- data/ggb/ggbbioschemas.jsonld | 2 +- data/ggbase/ggbasebioschemas.jsonld | 4 +- data/ggbio/ggbiobioschemas.jsonld | 20 ++++---- data/ggd-lasso/ggd-lassobioschemas.jsonld | 4 +- data/ggea/ggeabioschemas.jsonld | 2 +- data/ggms/ggmsbioschemas.jsonld | 2 +- data/ggost/ggostbioschemas.jsonld | 4 +- data/ggplot2/ggplot2bioschemas.jsonld | 2 +- data/ggrna/ggrnabioschemas.jsonld | 4 +- data/ggseqlogo/ggseqlogobioschemas.jsonld | 4 +- data/ggtools/ggtoolsbioschemas.jsonld | 14 +++--- data/ggtree/ggtreebioschemas.jsonld | 2 +- data/ghost/ghostbioschemas.jsonld | 4 +- data/giant/giantbioschemas.jsonld | 8 +-- data/giardiadb/giardiadbbioschemas.jsonld | 4 +- .../gibbsclusterbioschemas.jsonld | 16 +++--- data/gidb/gidbbioschemas.jsonld | 20 ++++---- data/gidetector/gidetectorbioschemas.jsonld | 4 +- data/giggle/gigglebioschemas.jsonld | 4 +- data/gigwa/gigwabioschemas.jsonld | 26 +++++----- data/giira/giirabioschemas.jsonld | 4 +- data/gimli/gimlibioschemas.jsonld | 18 +++---- data/gina/ginabioschemas.jsonld | 20 ++++---- data/giniclust2/giniclust2bioschemas.jsonld | 4 +- data/ginkgo/ginkgobioschemas.jsonld | 2 +- .../ginkgo_simulationbioschemas.jsonld | 4 +- data/ginsim/ginsimbioschemas.jsonld | 4 +- data/gips/gipsbioschemas.jsonld | 12 ++--- data/girafe/girafebioschemas.jsonld | 16 +++--- data/gispa/gispabioschemas.jsonld | 16 +++--- data/give/givebioschemas.jsonld | 2 +- data/gk_arrays/gk_arraysbioschemas.jsonld | 4 +- data/glad/gladbioschemas.jsonld | 8 +-- data/glad_tumor/glad_tumorbioschemas.jsonld | 4 +- data/glamm/glammbioschemas.jsonld | 4 +- data/glanet/glanetbioschemas.jsonld | 8 +-- data/glass/glassbioschemas.jsonld | 4 +- data/glassgo/glassgobioschemas.jsonld | 4 +- data/glimma/glimmabioschemas.jsonld | 8 +-- data/glint/glintbioschemas.jsonld | 4 +- .../globalancovabioschemas.jsonld | 6 +-- data/globalseq/globalseqbioschemas.jsonld | 26 +++++----- data/globaltest/globaltestbioschemas.jsonld | 4 +- .../globetrotterbioschemas.jsonld | 2 +- data/globplot/globplotbioschemas.jsonld | 4 +- data/globplotter/globplotterbioschemas.jsonld | 4 +- data/glossary/glossarybioschemas.jsonld | 8 +-- data/glue/gluebioschemas.jsonld | 20 ++++---- data/glutton/gluttonbioschemas.jsonld | 4 +- .../glycan_array_dashboardbioschemas.jsonld | 2 +- .../glycananalyzerbioschemas.jsonld | 4 +- data/glycanmass/glycanmassbioschemas.jsonld | 4 +- data/glycodigest/glycodigestbioschemas.jsonld | 12 ++--- .../glycofragmentbioschemas.jsonld | 4 +- data/glycomod/glycomodbioschemas.jsonld | 2 +- data/glyconnect/glyconnectbioschemas.jsonld | 4 +- .../glycosciencesbioschemas.jsonld | 4 +- data/glycoviewer/glycoviewerbioschemas.jsonld | 4 +- data/glycresoft/glycresoftbioschemas.jsonld | 4 +- data/glydin/glydinbioschemas.jsonld | 4 +- .../glynest_and_casperbioschemas.jsonld | 2 +- data/glynsight/glynsightbioschemas.jsonld | 2 +- data/glys3/glys3bioschemas.jsonld | 4 +- data/gma/gmabioschemas.jsonld | 4 +- data/gmap_build/gmap_buildbioschemas.jsonld | 4 +- .../gmap_iit_storebioschemas.jsonld | 2 +- data/gmapr/gmaprbioschemas.jsonld | 4 +- data/gmata/gmatabioschemas.jsonld | 8 +-- data/gmato/gmatobioschemas.jsonld | 4 +- data/gmd-r/gmd-rbioschemas.jsonld | 2 +- data/gmd/gmdbioschemas.jsonld | 2 +- data/gmdr/gmdrbioschemas.jsonld | 2 +- data/gmrp/gmrpbioschemas.jsonld | 4 +- data/gms/gmsbioschemas.jsonld | 2 +- data/gmt/gmtbioschemas.jsonld | 16 +++--- data/gna/gnabioschemas.jsonld | 4 +- data/gnat/gnatbioschemas.jsonld | 4 +- data/gnat_nmr/gnat_nmrbioschemas.jsonld | 12 ++--- data/gnc/gncbioschemas.jsonld | 4 +- data/gnomad/gnomadbioschemas.jsonld | 24 ++++----- data/gnpis/gnpisbioschemas.jsonld | 8 +-- data/go-elite/go-elitebioschemas.jsonld | 4 +- data/go2msig/go2msigbioschemas.jsonld | 2 +- data/go_feat/go_featbioschemas.jsonld | 4 +- .../go_term_finderbioschemas.jsonld | 4 +- .../go_term_mapperbioschemas.jsonld | 2 +- data/goa_gubbar/goa_gubbarbioschemas.jsonld | 4 +- data/gobyweb/gobywebbioschemas.jsonld | 18 +++---- data/godef/godefbioschemas.jsonld | 6 +-- data/godmd/godmdbioschemas.jsonld | 4 +- data/goexpress/goexpressbioschemas.jsonld | 4 +- data/gofish/gofishbioschemas.jsonld | 4 +- data/gofuncr/gofuncrbioschemas.jsonld | 2 +- data/gofunction/gofunctionbioschemas.jsonld | 2 +- data/gold/goldbioschemas.jsonld | 4 +- .../golden_helixbioschemas.jsonld | 6 +-- .../goldenmutagenesisbioschemas.jsonld | 8 +-- data/goldilocks/goldilocksbioschemas.jsonld | 14 +++--- data/gomapman/gomapmanbioschemas.jsonld | 8 +-- data/gominer_ws/gominer_wsbioschemas.jsonld | 4 +- data/gomodeler/gomodelerbioschemas.jsonld | 4 +- data/goname/gonamebioschemas.jsonld | 10 ++-- data/gonet/gonetbioschemas.jsonld | 20 ++++---- .../googlegenomicsbioschemas.jsonld | 8 +-- data/gopher/gopherbioschemas.jsonld | 8 +-- data/goplot/goplotbioschemas.jsonld | 4 +- data/gopro/goprobioschemas.jsonld | 4 +- data/goprofiles/goprofilesbioschemas.jsonld | 8 +-- data/gorgon/gorgonbioschemas.jsonld | 4 +- data/gorilla/gorillabioschemas.jsonld | 4 +- data/gorth/gorthbioschemas.jsonld | 4 +- data/gosemsim/gosemsimbioschemas.jsonld | 12 ++--- data/goseq/goseqbioschemas.jsonld | 8 +-- data/gosim/gosimbioschemas.jsonld | 8 +-- data/gossto/gosstobioschemas.jsonld | 8 +-- data/gostag/gostagbioschemas.jsonld | 4 +- data/gostats/gostatsbioschemas.jsonld | 2 +- data/gosummaries/gosummariesbioschemas.jsonld | 4 +- data/gothic/gothicbioschemas.jsonld | 8 +-- data/gotools/gotoolsbioschemas.jsonld | 6 +-- data/gotrapper/gotrapperbioschemas.jsonld | 16 +++--- data/gowinda/gowindabioschemas.jsonld | 4 +- data/gpa/gpabioschemas.jsonld | 4 +- data/gpart/gpartbioschemas.jsonld | 4 +- data/gpcr-modsim/gpcr-modsimbioschemas.jsonld | 4 +- data/gpcr-ssfe/gpcr-ssfebioschemas.jsonld | 8 +-- ...gpcr_sarfari_blast_searchbioschemas.jsonld | 4 +- ...ari_small_molecule_searchbioschemas.jsonld | 4 +- .../gpcrautomodelbioschemas.jsonld | 4 +- data/gpcrdb/gpcrdbbioschemas.jsonld | 4 +- data/gpcrhmm/gpcrhmmbioschemas.jsonld | 4 +- data/gpcrpred/gpcrpredbioschemas.jsonld | 4 +- data/gpcrs/gpcrsbioschemas.jsonld | 4 +- data/gpcrsclass/gpcrsclassbioschemas.jsonld | 4 +- .../gpgpufragfoldbioschemas.jsonld | 4 +- .../gpi-anchor_biosynthesisbioschemas.jsonld | 30 +++++------ data/gplink/gplinkbioschemas.jsonld | 12 ++--- data/gpls/gplsbioschemas.jsonld | 4 +- data/gpm/gpmbioschemas.jsonld | 14 +++--- data/gpmaw_lite/gpmaw_litebioschemas.jsonld | 4 +- data/gpmdb_api/gpmdb_apibioschemas.jsonld | 4 +- data/gppat/gppatbioschemas.jsonld | 2 +- data/gprege/gpregebioschemas.jsonld | 16 +++--- data/gprofile_r/gprofile_rbioschemas.jsonld | 12 ++--- data/gprotpred/gprotpredbioschemas.jsonld | 2 +- data/gps-sumo/gps-sumobioschemas.jsonld | 4 +- data/gps/gpsbioschemas.jsonld | 4 +- data/gpsdb/gpsdbbioschemas.jsonld | 4 +- data/gpseq/gpseqbioschemas.jsonld | 4 +- data/gpu-cassert/gpu-cassertbioschemas.jsonld | 2 +- data/gpuam/gpuambioschemas.jsonld | 4 +- data/grabb/grabbbioschemas.jsonld | 6 +-- data/graemlin/graemlinbioschemas.jsonld | 8 +-- data/graftm/graftmbioschemas.jsonld | 18 +++---- data/gramm-x/gramm-xbioschemas.jsonld | 4 +- data/granar/granarbioschemas.jsonld | 4 +- data/granvil/granvilbioschemas.jsonld | 10 ++-- .../grape_databasebioschemas.jsonld | 22 ++++---- data/grape_rna/grape_rnabioschemas.jsonld | 4 +- data/graph-gpa/graph-gpabioschemas.jsonld | 4 +- data/graph/graphbioschemas.jsonld | 4 +- .../graph_peak_callerbioschemas.jsonld | 12 ++--- .../graphalignmentbioschemas.jsonld | 10 ++-- data/graphat/graphatbioschemas.jsonld | 4 +- data/graphite/graphitebioschemas.jsonld | 12 ++--- data/graphiteweb/graphitewebbioschemas.jsonld | 2 +- .../graphkernelsbioschemas.jsonld | 4 +- data/graphprot/graphprotbioschemas.jsonld | 2 +- data/graphtyper/graphtyperbioschemas.jsonld | 4 +- data/graphweb/graphwebbioschemas.jsonld | 8 +-- data/grapple/grapplebioschemas.jsonld | 4 +- .../grcalculatorbioschemas.jsonld | 16 +++--- data/gream/greambioschemas.jsonld | 4 +- data/great/greatbioschemas.jsonld | 4 +- .../greatscanmultipatternsbioschemas.jsonld | 8 +-- .../greatscanpatternsbioschemas.jsonld | 4 +- .../green_listedbioschemas.jsonld | 4 +- data/greenphyldb/greenphyldbbioschemas.jsonld | 4 +- data/grein/greinbioschemas.jsonld | 16 +++--- data/grenits/grenitsbioschemas.jsonld | 4 +- data/grep_count/grep_countbioschemas.jsonld | 4 +- .../greylistchipbioschemas.jsonld | 4 +- data/gribcg/gribcgbioschemas.jsonld | 12 ++--- data/grid_map/grid_mapbioschemas.jsonld | 2 +- data/gridmos/gridmosbioschemas.jsonld | 10 ++-- data/gridss/gridssbioschemas.jsonld | 4 +- data/grinn/grinnbioschemas.jsonld | 4 +- data/grisotto/grisottobioschemas.jsonld | 4 +- data/grit/gritbioschemas.jsonld | 4 +- data/grm/grmbioschemas.jsonld | 2 +- data/grnsight/grnsightbioschemas.jsonld | 16 +++--- data/gro2mat/gro2matbioschemas.jsonld | 2 +- data/groc-svs/groc-svsbioschemas.jsonld | 4 +- data/grohmm/grohmmbioschemas.jsonld | 28 +++++------ data/gromacs/gromacsbioschemas.jsonld | 4 +- data/groot/grootbioschemas.jsonld | 4 +- data/groupedsurv/groupedsurvbioschemas.jsonld | 6 +-- data/grouper/grouperbioschemas.jsonld | 4 +- data/grrann/grrannbioschemas.jsonld | 2 +- data/grridge/grridgebioschemas.jsonld | 4 +- data/grtools/grtoolsbioschemas.jsonld | 8 +-- data/gs-lage/gs-lagebioschemas.jsonld | 2 +- data/gsa-snp/gsa-snpbioschemas.jsonld | 4 +- data/gsaa/gsaabioschemas.jsonld | 4 +- data/gsan/gsanbioschemas.jsonld | 4 +- data/gsar/gsarbioschemas.jsonld | 28 +++++------ data/gsca/gscabioschemas.jsonld | 16 +++--- data/gscluster/gsclusterbioschemas.jsonld | 16 +++--- data/gsds/gsdsbioschemas.jsonld | 4 +- data/gse/gsebioschemas.jsonld | 4 +- data/gsea/gseabioschemas.jsonld | 8 +-- data/gseabase/gseabasebioschemas.jsonld | 8 +-- .../gseabenchmarkerbioschemas.jsonld | 4 +- data/gsean/gseanbioschemas.jsonld | 4 +- data/gsearch/gsearchbioschemas.jsonld | 4 +- data/gsnap/gsnapbioschemas.jsonld | 32 ++++++------ data/gsrc/gsrcbioschemas.jsonld | 4 +- data/gsri/gsribioschemas.jsonld | 4 +- data/gst/gstbioschemas.jsonld | 4 +- data/gstpred/gstpredbioschemas.jsonld | 4 +- .../gsuite_hyperbrowserbioschemas.jsonld | 4 +- data/gsva/gsvabioschemas.jsonld | 10 ++-- data/gtcreator/gtcreatorbioschemas.jsonld | 4 +- data/gtex/gtexbioschemas.jsonld | 10 ++-- data/gtfold/gtfoldbioschemas.jsonld | 4 +- data/gtrellis/gtrellisbioschemas.jsonld | 22 ++++---- data/gtz/gtzbioschemas.jsonld | 4 +- data/guardd/guarddbioschemas.jsonld | 4 +- data/guidance2/guidance2bioschemas.jsonld | 10 ++-- .../guidedclusteringbioschemas.jsonld | 4 +- data/guides/guidesbioschemas.jsonld | 4 +- data/guidescan/guidescanbioschemas.jsonld | 8 +-- data/guideseq/guideseqbioschemas.jsonld | 4 +- .../guidetopharmacologybioschemas.jsonld | 22 ++++---- data/guidock-vnc/guidock-vncbioschemas.jsonld | 4 +- data/guidock/guidockbioschemas.jsonld | 18 +++---- data/guild/guildbioschemas.jsonld | 14 +++--- data/guildify/guildifybioschemas.jsonld | 16 +++--- data/guitar/guitarbioschemas.jsonld | 18 +++---- data/gunifrac/gunifracbioschemas.jsonld | 4 +- data/guugle/guuglebioschemas.jsonld | 6 +-- data/guv-ap/guv-apbioschemas.jsonld | 8 +-- data/gvista/gvistabioschemas.jsonld | 4 +- data/gviz/gvizbioschemas.jsonld | 4 +- data/gw-sem/gw-sembioschemas.jsonld | 4 +- data/gwama/gwamabioschemas.jsonld | 4 +- data/gwar/gwarbioschemas.jsonld | 4 +- .../gwas_catalogbioschemas.jsonld | 14 +++--- data/gwascat/gwascatbioschemas.jsonld | 4 +- data/gwasdb/gwasdbbioschemas.jsonld | 4 +- .../gwasinspectorbioschemas.jsonld | 4 +- data/gwaspi/gwaspibioschemas.jsonld | 8 +-- data/gwasrapidd/gwasrapiddbioschemas.jsonld | 4 +- data/gwastools/gwastoolsbioschemas.jsonld | 12 ++--- data/gwasurvivr/gwasurvivrbioschemas.jsonld | 4 +- data/gwatoolbox/gwatoolboxbioschemas.jsonld | 2 +- data/gwfasta/gwfastabioschemas.jsonld | 4 +- data/gwips-viz/gwips-vizbioschemas.jsonld | 14 +++--- data/gwrm/gwrmbioschemas.jsonld | 22 ++++---- data/gxa/gxabioschemas.jsonld | 4 +- data/gxa_expt/gxa_exptbioschemas.jsonld | 18 +++---- data/gxd/gxdbioschemas.jsonld | 4 +- data/gxescan/gxescanbioschemas.jsonld | 4 +- data/gxna/gxnabioschemas.jsonld | 4 +- data/gydb/gydbbioschemas.jsonld | 4 +- data/gypsum-dl/gypsum-dlbioschemas.jsonld | 26 +++++----- data/h-blast/h-blastbioschemas.jsonld | 4 +- data/h-blox/h-bloxbioschemas.jsonld | 8 +-- data/h-clust/h-clustbioschemas.jsonld | 4 +- .../h-protectionbioschemas.jsonld | 6 +-- data/h-vdw/h-vdwbioschemas.jsonld | 2 +- data/h5vc/h5vcbioschemas.jsonld | 4 +- data/haddock/haddockbioschemas.jsonld | 14 +++--- .../hairpin_annotationbioschemas.jsonld | 4 +- .../haloarchaeal_genomesbioschemas.jsonld | 8 +-- data/hamap-scan/hamap-scanbioschemas.jsonld | 4 +- data/hamap/hamapbioschemas.jsonld | 12 ++--- data/hamdb/hamdbbioschemas.jsonld | 4 +- data/hammock/hammockbioschemas.jsonld | 4 +- data/hamr/hamrbioschemas.jsonld | 8 +-- data/hamster/hamsterbioschemas.jsonld | 2 +- data/hana/hanabioschemas.jsonld | 8 +-- data/hansa/hansabioschemas.jsonld | 2 +- data/hapassoc/hapassocbioschemas.jsonld | 4 +- data/hapchat/hapchatbioschemas.jsonld | 4 +- data/hapedit/hapeditbioschemas.jsonld | 4 +- .../hapevolutionbioschemas.jsonld | 4 +- data/hapfabia/hapfabiabioschemas.jsonld | 28 +++++------ data/hapflk/hapflkbioschemas.jsonld | 4 +- data/hapflow/hapflowbioschemas.jsonld | 8 +-- data/hapler/haplerbioschemas.jsonld | 4 +- data/haplin/haplinbioschemas.jsonld | 14 +++--- data/haplogrep/haplogrepbioschemas.jsonld | 4 +- data/haplohseq/haplohseqbioschemas.jsonld | 4 +- data/haplor/haplorbioschemas.jsonld | 2 +- data/haploscope/haploscopebioschemas.jsonld | 4 +- data/haplosuite/haplosuitebioschemas.jsonld | 4 +- data/haploview/haploviewbioschemas.jsonld | 4 +- data/haplowser/haplowserbioschemas.jsonld | 2 +- data/happy/happybioschemas.jsonld | 4 +- data/hapreads/hapreadsbioschemas.jsonld | 4 +- data/hapredictor/hapredictorbioschemas.jsonld | 2 +- data/harman/harmanbioschemas.jsonld | 18 +++---- data/harmony/harmonybioschemas.jsonld | 4 +- data/harsh/harshbioschemas.jsonld | 4 +- data/harshlight/harshlightbioschemas.jsonld | 6 +-- data/harvester/harvesterbioschemas.jsonld | 4 +- data/hasp/haspbioschemas.jsonld | 4 +- data/hatseq/hatseqbioschemas.jsonld | 2 +- data/hawkdock/hawkdockbioschemas.jsonld | 14 +++--- data/hawkeye/hawkeyebioschemas.jsonld | 4 +- .../hayai-annotation_plantsbioschemas.jsonld | 2 +- data/haystack/haystackbioschemas.jsonld | 4 +- data/hbayesdm/hbayesdmbioschemas.jsonld | 14 +++--- data/hca/hcabioschemas.jsonld | 4 +- data/hcsnip/hcsnipbioschemas.jsonld | 2 +- data/hdam/hdambioschemas.jsonld | 4 +- data/hdock/hdockbioschemas.jsonld | 4 +- data/hdtd/hdtdbioschemas.jsonld | 18 +++---- data/heap/heapbioschemas.jsonld | 4 +- data/heat_plus/heat_plusbioschemas.jsonld | 12 ++--- data/heat_seq/heat_seqbioschemas.jsonld | 2 +- data/heatmaps/heatmapsbioschemas.jsonld | 4 +- data/heatplus/heatplusbioschemas.jsonld | 4 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data/hgv_david/hgv_davidbioschemas.jsonld | 2 +- data/hgv_gpass/hgv_gpassbioschemas.jsonld | 2 +- data/hgv_ldtools/hgv_ldtoolsbioschemas.jsonld | 4 +- .../hgv_linktogprofilebioschemas.jsonld | 4 +- data/hgv_lps/hgv_lpsbioschemas.jsonld | 4 +- data/hgv_pass/hgv_passbioschemas.jsonld | 4 +- data/hh-motif/hh-motifbioschemas.jsonld | 16 +++--- data/hh-suite/hh-suitebioschemas.jsonld | 4 +- .../hhalign-kbestbioschemas.jsonld | 4 +- data/hhblits/hhblitsbioschemas.jsonld | 4 +- data/hhmd/hhmdbioschemas.jsonld | 8 +-- data/hhpred/hhpredbioschemas.jsonld | 2 +- data/hhrep/hhrepbioschemas.jsonld | 4 +- data/hi-jack/hi-jackbioschemas.jsonld | 4 +- data/hiannotator/hiannotatorbioschemas.jsonld | 8 +-- data/hibag/hibagbioschemas.jsonld | 18 +++---- data/hic-pro/hic-probioschemas.jsonld | 16 +++--- data/hicat/hicatbioschemas.jsonld | 4 +- data/hicnn/hicnnbioschemas.jsonld | 4 +- data/hicplotter/hicplotterbioschemas.jsonld | 2 +- data/hicrep/hicrepbioschemas.jsonld | 2 +- data/hicup/hicupbioschemas.jsonld | 4 +- data/hide/hidebioschemas.jsonld | 8 +-- ...hical_feature_engineeringbioschemas.jsonld | 2 +- .../hierarchy_web_servicesbioschemas.jsonld | 4 +- data/hiergwas/hiergwasbioschemas.jsonld | 8 +-- data/hifix/hifixbioschemas.jsonld | 4 +- data/higdb/higdbbioschemas.jsonld | 8 +-- data/highmap/highmapbioschemas.jsonld | 4 +- data/highresnps/highresnpsbioschemas.jsonld | 4 +- data/hiite/hiitebioschemas.jsonld | 8 +-- .../hilbertcurvebioschemas.jsonld | 4 +- data/hilbertvis/hilbertvisbioschemas.jsonld | 4 +- .../hilbertvisguibioschemas.jsonld | 4 +- data/hingeprot/hingeprotbioschemas.jsonld | 4 +- data/hipathdb/hipathdbbioschemas.jsonld | 4 +- data/hipathia/hipathiabioschemas.jsonld | 16 +++--- data/hipfsta/hipfstabioschemas.jsonld | 4 +- .../hireadsprocessorbioschemas.jsonld | 4 +- data/hisat2/hisat2bioschemas.jsonld | 34 ++++++------- data/histome/histomebioschemas.jsonld | 2 +- .../histone_coderbioschemas.jsonld | 4 +- .../histone_tailsbioschemas.jsonld | 4 +- data/histonehmm/histonehmmbioschemas.jsonld | 2 +- data/historian/historianbioschemas.jsonld | 4 +- data/hit/hitbioschemas.jsonld | 4 +- data/hitc/hitcbioschemas.jsonld | 14 +++--- data/hitpredict/hitpredictbioschemas.jsonld | 4 +- data/hitrace-web/hitrace-webbioschemas.jsonld | 8 +-- data/hitselect/hitselectbioschemas.jsonld | 4 +- data/hivcleave/hivcleavebioschemas.jsonld | 4 +- data/hive/hivebioschemas.jsonld | 10 ++-- data/hivproti/hivprotibioschemas.jsonld | 4 +- data/hla_bind/hla_bindbioschemas.jsonld | 4 +- .../hlarestrictorbioschemas.jsonld | 12 ++--- data/hmdad/hmdadbioschemas.jsonld | 4 +- data/hmdb/hmdbbioschemas.jsonld | 2 +- data/hmdbquery/hmdbquerybioschemas.jsonld | 4 +- data/hml/hmlbioschemas.jsonld | 4 +- data/hmm-tm/hmm-tmbioschemas.jsonld | 24 ++++----- data/hmmcopy/hmmcopybioschemas.jsonld | 8 +-- data/hmmer2/hmmer2bioschemas.jsonld | 8 +-- data/hmmer3/hmmer3bioschemas.jsonld | 12 ++--- data/hmmerctter/hmmerctterbioschemas.jsonld | 2 +- data/hmmgene/hmmgenebioschemas.jsonld | 4 +- data/hmmibd/hmmibdbioschemas.jsonld | 2 +- data/hmmptm/hmmptmbioschemas.jsonld | 4 +- data/hmmscan_ebi/hmmscan_ebibioschemas.jsonld | 8 +-- data/hmmsplicer/hmmsplicerbioschemas.jsonld | 4 +- data/hmmtop/hmmtopbioschemas.jsonld | 4 +- data/hmmufotu/hmmufotubioschemas.jsonld | 4 +- data/hmoment/hmomentbioschemas.jsonld | 6 +-- data/hmp2/hmp2bioschemas.jsonld | 12 ++--- .../hmrfbayeshicbioschemas.jsonld | 4 +- data/hms-ics/hms-icsbioschemas.jsonld | 2 +- data/hmtdb/hmtdbbioschemas.jsonld | 34 ++++++------- data/hnadock/hnadockbioschemas.jsonld | 12 ++--- data/hncdb/hncdbbioschemas.jsonld | 20 ++++---- data/hogenom/hogenombioschemas.jsonld | 8 +-- data/holmes/holmesbioschemas.jsonld | 4 +- data/homa/homabioschemas.jsonld | 4 +- data/home/homebioschemas.jsonld | 18 +++---- data/homer-a/homer-abioschemas.jsonld | 2 +- data/homer-m/homer-mbioschemas.jsonld | 4 +- data/homolens/homolensbioschemas.jsonld | 4 +- ...mologous_series_detectionbioschemas.jsonld | 4 +- .../homozygositymapperbioschemas.jsonld | 4 +- data/homsi/homsibioschemas.jsonld | 4 +- data/hopach/hopachbioschemas.jsonld | 4 +- data/hora/horabioschemas.jsonld | 2 +- data/hot/hotbioschemas.jsonld | 10 ++-- data/hotnet2/hotnet2bioschemas.jsonld | 4 +- data/hotregion/hotregionbioschemas.jsonld | 4 +- data/hotspot/hotspotbioschemas.jsonld | 4 +- .../hotspot_wizardbioschemas.jsonld | 34 ++++++------- data/hotspring/hotspringbioschemas.jsonld | 2 +- data/hovergen/hovergenbioschemas.jsonld | 4 +- data/hpar/hparbioschemas.jsonld | 4 +- data/hpeak/hpeakbioschemas.jsonld | 2 +- data/hpg_aligner/hpg_alignerbioschemas.jsonld | 4 +- .../hplcsimulatorbioschemas.jsonld | 4 +- data/hpm/hpmbioschemas.jsonld | 12 ++--- data/hpo/hpobioschemas.jsonld | 20 ++++---- data/hprd/hprdbioschemas.jsonld | 4 +- data/hrm/hrmbioschemas.jsonld | 2 +- data/hrtbldb/hrtbldbbioschemas.jsonld | 4 +- data/hrvanalysis/hrvanalysisbioschemas.jsonld | 6 +-- data/hsa/hsabioschemas.jsonld | 4 +- data/hslpred/hslpredbioschemas.jsonld | 4 +- data/hsymdock/hsymdockbioschemas.jsonld | 4 +- data/htm-one/htm-onebioschemas.jsonld | 4 +- data/html4blast/html4blastbioschemas.jsonld | 4 +- .../htp-oligodesignerbioschemas.jsonld | 2 +- data/htpheno/htphenobioschemas.jsonld | 2 +- data/htqpcr/htqpcrbioschemas.jsonld | 16 +++--- data/htr/htrbioschemas.jsonld | 4 +- data/htsanalyzer/htsanalyzerbioschemas.jsonld | 46 ++++++++--------- data/htscluster/htsclusterbioschemas.jsonld | 4 +- data/htseq/htseqbioschemas.jsonld | 4 +- data/htseqcount/htseqcountbioschemas.jsonld | 2 +- data/htseqgenie/htseqgeniebioschemas.jsonld | 2 +- data/htseqtools/htseqtoolsbioschemas.jsonld | 8 +-- data/htsfilter/htsfilterbioschemas.jsonld | 12 ++--- data/htsint/htsintbioschemas.jsonld | 4 +- data/htslib/htslibbioschemas.jsonld | 4 +- data/htssip/htssipbioschemas.jsonld | 4 +- data/htsvi/htsvibioschemas.jsonld | 4 +- data/htsvis/htsvisbioschemas.jsonld | 4 +- data/httmm/httmmbioschemas.jsonld | 4 +- data/hubba/hubbabioschemas.jsonld | 8 +-- data/hubmed/hubmedbioschemas.jsonld | 4 +- data/hudsen/hudsenbioschemas.jsonld | 10 ++-- data/huf-zinc/huf-zincbioschemas.jsonld | 4 +- data/hulk/hulkbioschemas.jsonld | 18 +++---- .../human_splicing_finderbioschemas.jsonld | 4 +- data/humcfs/humcfsbioschemas.jsonld | 4 +- data/hupho/huphobioschemas.jsonld | 12 ++--- data/hx-express/hx-expressbioschemas.jsonld | 4 +- data/hybridcheck/hybridcheckbioschemas.jsonld | 2 +- data/hybridmtest/hybridmtestbioschemas.jsonld | 4 +- data/hybtrack/hybtrackbioschemas.jsonld | 4 +- data/hyddb/hyddbbioschemas.jsonld | 2 +- data/hyden/hydenbioschemas.jsonld | 4 +- data/hydpred/hydpredbioschemas.jsonld | 2 +- .../hydrogen_bondifierbioschemas.jsonld | 4 +- .../hydrophobicitybioschemas.jsonld | 4 +- data/hyfi/hyfibioschemas.jsonld | 4 +- data/hype/hypebioschemas.jsonld | 2 +- data/hypercldb/hypercldbbioschemas.jsonld | 28 +++++------ data/hyperdraw/hyperdrawbioschemas.jsonld | 4 +- data/hypergeny/hypergenybioschemas.jsonld | 2 +- data/hypergraph/hypergraphbioschemas.jsonld | 4 +- ...graph_dynamic_correlationbioschemas.jsonld | 14 +++--- data/hyperlasso/hyperlassobioschemas.jsonld | 4 +- data/hyperprior/hyperpriorbioschemas.jsonld | 4 +- data/hypertree/hypertreebioschemas.jsonld | 4 +- data/hyphy/hyphybioschemas.jsonld | 10 ++-- .../hypocotyl-unetbioschemas.jsonld | 4 +- data/hypoxiadb/hypoxiadbbioschemas.jsonld | 6 +-- data/hysp/hyspbioschemas.jsonld | 4 +- data/hzanalyzer/hzanalyzerbioschemas.jsonld | 4 +- data/i-gsea4gwas/i-gsea4gwasbioschemas.jsonld | 2 +- data/i-mutant/i-mutantbioschemas.jsonld | 4 +- .../i-mutant_suitebioschemas.jsonld | 4 +- data/i-pv/i-pvbioschemas.jsonld | 4 +- data/i-tasser-mr/i-tasser-mrbioschemas.jsonld | 12 ++--- data/i-tasser/i-tasserbioschemas.jsonld | 4 +- data/i-tracker/i-trackerbioschemas.jsonld | 4 +- data/i2d/i2dbioschemas.jsonld | 4 +- .../i2i-siteenginebioschemas.jsonld | 4 +- data/iacp/iacpbioschemas.jsonld | 4 +- data/iadmix/iadmixbioschemas.jsonld | 4 +- data/iambee/iambeebioschemas.jsonld | 20 ++++---- data/iamp-2l/iamp-2lbioschemas.jsonld | 2 +- data/iamxt/iamxtbioschemas.jsonld | 4 +- data/iaseq/iaseqbioschemas.jsonld | 4 +- data/ibbig/ibbigbioschemas.jsonld | 4 +- data/ibdmap/ibdmapbioschemas.jsonld | 4 +- data/ibdsim/ibdsimbioschemas.jsonld | 4 +- data/ibh/ibhbioschemas.jsonld | 4 +- data/ibig/ibigbioschemas.jsonld | 4 +- data/ibis/ibisbioschemas.jsonld | 4 +- data/ibis_ncbi/ibis_ncbibioschemas.jsonld | 4 +- data/ibiss/ibissbioschemas.jsonld | 2 +- data/ibmq/ibmqbioschemas.jsonld | 26 +++++----- data/ibs/ibsbioschemas.jsonld | 6 +-- data/ibws_ws/ibws_wsbioschemas.jsonld | 4 +- data/icarus/icarusbioschemas.jsonld | 4 +- .../icataly-pseaacbioschemas.jsonld | 4 +- data/icbn/icbnbioschemas.jsonld | 4 +- data/icc/iccbioschemas.jsonld | 4 +- data/iccare/iccarebioschemas.jsonld | 4 +- data/icd-10/icd-10bioschemas.jsonld | 4 +- data/icdi-psefpt/icdi-psefptbioschemas.jsonld | 4 +- data/ice/icebioschemas.jsonld | 4 +- data/iceberg/icebergbioschemas.jsonld | 4 +- data/icens/icensbioschemas.jsonld | 8 +-- .../icgc_data_portalbioschemas.jsonld | 2 +- data/icheck/icheckbioschemas.jsonld | 8 +-- data/ichem/ichembioschemas.jsonld | 2 +- data/ichet/ichetbioschemas.jsonld | 4 +- data/ichip/ichipbioschemas.jsonld | 8 +-- data/ichseg/ichsegbioschemas.jsonld | 8 +-- data/iclabel/iclabelbioschemas.jsonld | 8 +-- data/iclc/iclcbioschemas.jsonld | 4 +- .../iclusterplusbioschemas.jsonld | 8 +-- data/icm_web/icm_webbioschemas.jsonld | 4 +- data/icobra/icobrabioschemas.jsonld | 4 +- data/iconvert/iconvertbioschemas.jsonld | 4 +- data/icover/icoverbioschemas.jsonld | 2 +- data/icplquant/icplquantbioschemas.jsonld | 2 +- data/icsf/icsfbioschemas.jsonld | 4 +- data/icsnpathway/icsnpathwaybioschemas.jsonld | 4 +- data/ictnet2/ictnet2bioschemas.jsonld | 16 +++--- data/icy/icybioschemas.jsonld | 4 +- data/icytree/icytreebioschemas.jsonld | 4 +- data/id-align/id-alignbioschemas.jsonld | 4 +- .../id_history_converterbioschemas.jsonld | 2 +- data/idade2/idade2bioschemas.jsonld | 6 +-- data/idbases/idbasesbioschemas.jsonld | 4 +- data/idbps/idbpsbioschemas.jsonld | 4 +- data/idconvert/idconvertbioschemas.jsonld | 2 +- data/ideal/idealbioschemas.jsonld | 4 +- .../ideal_expressionbioschemas.jsonld | 4 +- data/ideal_rna/ideal_rnabioschemas.jsonld | 4 +- data/ideoviz/ideovizbioschemas.jsonld | 8 +-- data/idep/idepbioschemas.jsonld | 10 ++-- data/idepi/idepibioschemas.jsonld | 16 +++--- data/idhs-dmcac/idhs-dmcacbioschemas.jsonld | 4 +- data/idiogram/idiogrambioschemas.jsonld | 8 +-- .../idiographicabioschemas.jsonld | 2 +- .../idmappinganalysisbioschemas.jsonld | 10 ++-- data/idna-methyl/idna-methylbioschemas.jsonld | 4 +- data/idna4mc/idna4mcbioschemas.jsonld | 2 +- .../idna6ma-psekncbioschemas.jsonld | 4 +- data/idrem/idrembioschemas.jsonld | 4 +- .../idrug-targetbioschemas.jsonld | 4 +- .../idt_scitoolsbioschemas.jsonld | 4 +- data/idtarget/idtargetbioschemas.jsonld | 4 +- data/iedb-3d/iedb-3dbioschemas.jsonld | 2 +- data/iedb-ar/iedb-arbioschemas.jsonld | 4 +- data/iedb/iedbbioschemas.jsonld | 4 +- data/ielm/ielmbioschemas.jsonld | 8 +-- data/ielu/ielubioschemas.jsonld | 8 +-- data/iembase/iembasebioschemas.jsonld | 28 +++++------ data/iep/iepbioschemas.jsonld | 14 +++--- data/ifeature/ifeaturebioschemas.jsonld | 8 +-- data/iform/iformbioschemas.jsonld | 6 +-- data/ifuse/ifusebioschemas.jsonld | 4 +- data/igc/igcbioschemas.jsonld | 24 ++++----- data/igdd/igddbioschemas.jsonld | 4 +- data/igdiscover/igdiscoverbioschemas.jsonld | 4 +- data/iges/igesbioschemas.jsonld | 2 +- data/igipt/igiptbioschemas.jsonld | 4 +- data/igpred/igpredbioschemas.jsonld | 4 +- data/iguide/iguidebioschemas.jsonld | 20 ++++---- data/igv/igvbioschemas.jsonld | 4 +- data/igvtools/igvtoolsbioschemas.jsonld | 12 ++--- data/ihop_ws/ihop_wsbioschemas.jsonld | 4 +- .../ihsp-pseraaacbioschemas.jsonld | 4 +- data/ihw/ihwbioschemas.jsonld | 4 +- data/ihyd-pseaac/ihyd-pseaacbioschemas.jsonld | 8 +-- data/iis/iisbioschemas.jsonld | 12 ++--- data/ikap/ikapbioschemas.jsonld | 4 +- data/ikmc/ikmcbioschemas.jsonld | 4 +- data/ilastik/ilastikbioschemas.jsonld | 4 +- data/ilbind/ilbindbioschemas.jsonld | 2 +- data/ilearn/ilearnbioschemas.jsonld | 12 ++--- data/illumina/illuminabioschemas.jsonld | 4 +- data/illuminaio/illuminaiobioschemas.jsonld | 16 +++--- data/iloc-cell/iloc-cellbioschemas.jsonld | 4 +- data/iloops/iloopsbioschemas.jsonld | 8 +-- data/imaaagine/imaaaginebioschemas.jsonld | 2 +- data/imagehts/imagehtsbioschemas.jsonld | 2 +- data/imagej/imagejbioschemas.jsonld | 4 +- data/imagej_nih/imagej_nihbioschemas.jsonld | 4 +- data/imageo/imageobioschemas.jsonld | 4 +- data/imagepy/imagepybioschemas.jsonld | 4 +- data/imagic/imagicbioschemas.jsonld | 4 +- data/imaginr/imaginrbioschemas.jsonld | 8 +-- data/imas/imasbioschemas.jsonld | 4 +- data/imeges/imegesbioschemas.jsonld | 8 +-- data/imem-seq/imem-seqbioschemas.jsonld | 2 +- data/imembrane/imembranebioschemas.jsonld | 4 +- data/imet-q/imet-qbioschemas.jsonld | 2 +- data/imetagene/imetagenebioschemas.jsonld | 4 +- data/imeter/imeterbioschemas.jsonld | 2 +- data/imex/imexbioschemas.jsonld | 4 +- data/img2net/img2netbioschemas.jsonld | 4 +- data/img_m/img_mbioschemas.jsonld | 4 +- data/imgt/imgtbioschemas.jsonld | 8 +-- .../imgt_3dstructurebioschemas.jsonld | 2 +- ...gt_hla-sequence_alignmentbioschemas.jsonld | 4 +- data/imgt_hla/imgt_hlabioschemas.jsonld | 4 +- .../imgt_v-questbioschemas.jsonld | 4 +- data/imir/imirbioschemas.jsonld | 32 ++++++------ data/imirp/imirpbioschemas.jsonld | 6 +-- data/imkt/imktbioschemas.jsonld | 24 ++++----- data/imman/immanbioschemas.jsonld | 4 +- .../immclass2019bioschemas.jsonld | 4 +- data/immport/immportbioschemas.jsonld | 14 +++--- data/immquant/immquantbioschemas.jsonld | 6 +-- .../immuneregulationbioschemas.jsonld | 12 ++--- .../immunespacerbioschemas.jsonld | 4 +- data/immunoclust/immunoclustbioschemas.jsonld | 4 +- data/immunodb/immunodbbioschemas.jsonld | 2 +- .../immunomebrowserbioschemas.jsonld | 2 +- data/imod/imodbioschemas.jsonld | 4 +- data/imos/imosbioschemas.jsonld | 8 +-- data/imp/impbioschemas.jsonld | 4 +- .../imp_biomoleculesbioschemas.jsonld | 4 +- data/imp_omic/imp_omicbioschemas.jsonld | 14 +++--- .../impact_frameworkbioschemas.jsonld | 12 ++--- data/impact_s/impact_sbioschemas.jsonld | 6 +-- data/impala/impalabioschemas.jsonld | 4 +- data/impc/impcbioschemas.jsonld | 4 +- data/impcdata/impcdatabioschemas.jsonld | 4 +- data/impre/imprebioschemas.jsonld | 10 ++-- data/impulsede/impulsedebioschemas.jsonld | 12 ++--- data/impulsede2/impulsede2bioschemas.jsonld | 4 +- data/impute/imputebioschemas.jsonld | 4 +- data/imsdb/imsdbbioschemas.jsonld | 2 +- data/imtrbm/imtrbmbioschemas.jsonld | 4 +- data/imtrdb/imtrdbbioschemas.jsonld | 6 +-- .../incarnafbinvbioschemas.jsonld | 4 +- data/incgraph/incgraphbioschemas.jsonld | 4 +- data/inchi/inchibioschemas.jsonld | 4 +- data/incidence/incidencebioschemas.jsonld | 8 +-- data/incromap/incromapbioschemas.jsonld | 4 +- data/incucytedrc/incucytedrcbioschemas.jsonld | 12 ++--- data/indcaps/indcapsbioschemas.jsonld | 4 +- data/indecut/indecutbioschemas.jsonld | 4 +- data/indeed/indeedbioschemas.jsonld | 18 +++---- data/indelfr/indelfrbioschemas.jsonld | 4 +- .../indices_diversitybioschemas.jsonld | 2 +- data/indigo/indigobioschemas.jsonld | 10 ++-- data/indra-ipm/indra-ipmbioschemas.jsonld | 4 +- .../infernal_cmscanbioschemas.jsonld | 4 +- .../infiniumpurifybioschemas.jsonld | 4 +- data/infmod3dgen/infmod3dgenbioschemas.jsonld | 4 +- data/info-rna/info-rnabioschemas.jsonld | 4 +- data/infoalign/infoalignbioschemas.jsonld | 14 +++--- .../infoassemblybioschemas.jsonld | 14 +++--- data/infobase/infobasebioschemas.jsonld | 4 +- data/infocalc/infocalcbioschemas.jsonld | 4 +- data/inforesidue/inforesiduebioschemas.jsonld | 14 +++--- data/inforna/infornabioschemas.jsonld | 16 +++--- data/infoseq/infoseqbioschemas.jsonld | 10 ++-- data/inga/ingabioschemas.jsonld | 24 ++++----- data/ingap-sv/ingap-svbioschemas.jsonld | 8 +-- data/ingap/ingapbioschemas.jsonld | 8 +-- data/ingeneue/ingeneuebioschemas.jsonld | 4 +- ...ngenuity_variant_analysisbioschemas.jsonld | 4 +- data/initro-tyr/initro-tyrbioschemas.jsonld | 4 +- data/inmex/inmexbioschemas.jsonld | 2 +- data/innatedb/innatedbbioschemas.jsonld | 4 +- data/inparanoid/inparanoidbioschemas.jsonld | 4 +- data/inpas/inpasbioschemas.jsonld | 4 +- data/inpower/inpowerbioschemas.jsonld | 4 +- data/inps/inpsbioschemas.jsonld | 4 +- .../inr-physchembioschemas.jsonld | 4 +- data/insdc/insdcbioschemas.jsonld | 4 +- data/insect/insectbioschemas.jsonld | 2 +- data/insectbase/insectbasebioschemas.jsonld | 4 +- .../inserm-remapbioschemas.jsonld | 2 +- .../insertionmapperbioschemas.jsonld | 2 +- .../insilicosimmolbioexptbioschemas.jsonld | 4 +- .../insilicospectrobioschemas.jsonld | 4 +- data/inspiired/inspiiredbioschemas.jsonld | 4 +- ...ute_of_enzymology_serversbioschemas.jsonld | 4 +- data/insyght/insyghtbioschemas.jsonld | 4 +- data/intaa/intaabioschemas.jsonld | 8 +-- data/intact/intactbioschemas.jsonld | 4 +- data/intad/intadbioschemas.jsonld | 4 +- data/intansv/intansvbioschemas.jsonld | 6 +-- data/intarna/intarnabioschemas.jsonld | 22 ++++---- data/intb/intbbioschemas.jsonld | 22 ++++---- data/intcomp/intcompbioschemas.jsonld | 4 +- data/integrall/integrallbioschemas.jsonld | 6 +-- .../integrate-visbioschemas.jsonld | 4 +- ...somatic_mutation_analysisbioschemas.jsonld | 12 ++--- ...ic_mutation_analysis_ismabioschemas.jsonld | 16 +++--- .../integron_finderbioschemas.jsonld | 4 +- .../interactionsetbioschemas.jsonld | 18 +++---- .../interactivedisplaybioschemas.jsonld | 4 +- .../interactivedisplaybasebioschemas.jsonld | 8 +-- .../interactivennbioschemas.jsonld | 8 +-- .../interactiverosettabioschemas.jsonld | 4 +- .../interactome_insiderbioschemas.jsonld | 2 +- data/interest/interestbioschemas.jsonld | 4 +- data/interevol/interevolbioschemas.jsonld | 4 +- data/interferome/interferomebioschemas.jsonld | 4 +- data/intergr8/intergr8bioschemas.jsonld | 2 +- data/intermap3d/intermap3dbioschemas.jsonld | 2 +- data/intermine/interminebioschemas.jsonld | 32 ++++++------ data/interminer/interminerbioschemas.jsonld | 8 +-- data/interolog/interologbioschemas.jsonld | 8 +-- .../interolog_regulog_dbbioschemas.jsonld | 4 +- data/interoporc/interoporcbioschemas.jsonld | 4 +- data/interpol/interpolbioschemas.jsonld | 2 +- data/interpopula/interpopulabioschemas.jsonld | 2 +- data/interpred/interpredbioschemas.jsonld | 2 +- .../interproscan_4bioschemas.jsonld | 8 +-- .../interproscan_wsbioschemas.jsonld | 4 +- data/intersim/intersimbioschemas.jsonld | 14 +++--- data/interspia/interspiabioschemas.jsonld | 4 +- data/intervar/intervarbioschemas.jsonld | 8 +-- data/intervene/intervenebioschemas.jsonld | 14 +++--- data/intfold/intfoldbioschemas.jsonld | 2 +- data/intogen/intogenbioschemas.jsonld | 4 +- .../intramirexplorerbioschemas.jsonld | 4 +- data/intreped/intrepedbioschemas.jsonld | 4 +- data/intrepid/intrepidbioschemas.jsonld | 4 +- data/intsplice/intsplicebioschemas.jsonld | 2 +- data/inuc-pseknc/inuc-psekncbioschemas.jsonld | 4 +- data/invfest/invfestbioschemas.jsonld | 16 +++--- data/iobio/iobiobioschemas.jsonld | 10 ++-- data/iocbio/iocbiobioschemas.jsonld | 4 +- data/iom/iombioschemas.jsonld | 4 +- data/iomics/iomicsbioschemas.jsonld | 4 +- data/iongap/iongapbioschemas.jsonld | 4 +- data/ioniser/ioniserbioschemas.jsonld | 8 +-- data/iontree/iontreebioschemas.jsonld | 8 +-- data/ipac/ipacbioschemas.jsonld | 4 +- data/ipage/ipagebioschemas.jsonld | 4 +- data/iparts/ipartsbioschemas.jsonld | 4 +- data/ipat/ipatbioschemas.jsonld | 4 +- data/ipath/ipathbioschemas.jsonld | 22 ++++---- data/ipavs/ipavsbioschemas.jsonld | 2 +- data/ipba/ipbabioschemas.jsonld | 4 +- data/ipc/ipcbioschemas.jsonld | 12 ++--- data/ipcaps/ipcapsbioschemas.jsonld | 10 ++-- .../ipd-imgt_hlabioschemas.jsonld | 4 +- data/ipd/ipdbioschemas.jsonld | 2 +- data/ipgwas/ipgwasbioschemas.jsonld | 4 +- data/ipig/ipigbioschemas.jsonld | 4 +- data/ipk_blast/ipk_blastbioschemas.jsonld | 4 +- data/ipknot/ipknotbioschemas.jsonld | 4 +- data/ipo/ipobioschemas.jsonld | 14 +++--- data/ippbs-opt/ippbs-optbioschemas.jsonld | 4 +- .../ippbs-pseaacbioschemas.jsonld | 4 +- data/ippd/ippdbioschemas.jsonld | 4 +- data/ippi-esml/ippi-esmlbioschemas.jsonld | 4 +- data/ippi/ippibioschemas.jsonld | 4 +- .../ipro54-psekncbioschemas.jsonld | 4 +- .../ipromoter-2lbioschemas.jsonld | 4 +- data/iprot-sub/iprot-subbioschemas.jsonld | 18 +++---- data/iprstats/iprstatsbioschemas.jsonld | 4 +- data/ipsa/ipsabioschemas.jsonld | 4 +- data/iq-tree/iq-treebioschemas.jsonld | 2 +- data/iquant/iquantbioschemas.jsonld | 4 +- data/iranges/irangesbioschemas.jsonld | 16 +++--- data/irbis/irbisbioschemas.jsonld | 4 +- data/irefindex/irefindexbioschemas.jsonld | 4 +- data/irefr/irefrbioschemas.jsonld | 4 +- data/irefscape/irefscapebioschemas.jsonld | 8 +-- data/iresite/iresitebioschemas.jsonld | 2 +- data/irespred/irespredbioschemas.jsonld | 2 +- .../irisspatialfeaturesbioschemas.jsonld | 4 +- data/irma/irmabioschemas.jsonld | 4 +- data/irnad/irnadbioschemas.jsonld | 4 +- .../iro-3wpsekncbioschemas.jsonld | 2 +- data/irods/irodsbioschemas.jsonld | 8 +-- data/irootlab/irootlabbioschemas.jsonld | 4 +- data/irprofiler/irprofilerbioschemas.jsonld | 12 ++--- data/irscope/irscopebioschemas.jsonld | 2 +- .../irspot-psedncbioschemas.jsonld | 4 +- .../irspot-tncpseaacbioschemas.jsonld | 12 ++--- data/isa_tools/isa_toolsbioschemas.jsonld | 4 +- data/isambard/isambardbioschemas.jsonld | 4 +- data/isarst/isarstbioschemas.jsonld | 2 +- data/iseq/iseqbioschemas.jsonld | 2 +- data/isescan/isescanbioschemas.jsonld | 4 +- data/isetbio/isetbiobioschemas.jsonld | 16 +++--- data/islandpath/islandpathbioschemas.jsonld | 2 +- .../islandviewerbioschemas.jsonld | 4 +- data/isma/ismabioschemas.jsonld | 6 +-- data/ismara/ismarabioschemas.jsonld | 2 +- .../ismara_clientbioschemas.jsonld | 2 +- data/isno-aapair/isno-aapairbioschemas.jsonld | 10 ++-- data/isno-pseaac/isno-pseaacbioschemas.jsonld | 4 +- data/iso2flux/iso2fluxbioschemas.jsonld | 4 +- data/isobar/isobarbioschemas.jsonld | 8 +-- data/isoblat/isoblatbioschemas.jsonld | 4 +- .../isochore-ebibioschemas.jsonld | 2 +- data/isochore/isochorebioschemas.jsonld | 4 +- data/isoem/isoembioschemas.jsonld | 6 +-- data/isoexpresso/isoexpressobioschemas.jsonld | 14 +++--- data/isofinder/isofinderbioschemas.jsonld | 4 +- .../isoformswitchanalyzerbioschemas.jsonld | 4 +- data/isogenegui/isogeneguibioschemas.jsonld | 8 +-- data/isolde/isoldebioschemas.jsonld | 8 +-- data/isomir-sea/isomir-seabioschemas.jsonld | 4 +- data/isomirs/isomirsbioschemas.jsonld | 6 +-- data/isoscale/isoscalebioschemas.jsonld | 4 +- data/isoscm/isoscmbioschemas.jsonld | 4 +- data/isotop/isotopbioschemas.jsonld | 4 +- data/isotopica/isotopicabioschemas.jsonld | 4 +- data/isotopident/isotopidentbioschemas.jsonld | 4 +- data/isown/isownbioschemas.jsonld | 4 +- data/ispot/ispotbioschemas.jsonld | 4 +- data/istable/istablebioschemas.jsonld | 2 +- data/isuc-pseopt/isuc-pseoptbioschemas.jsonld | 4 +- data/isulf-cys/isulf-cysbioschemas.jsonld | 8 +-- data/isvase/isvasebioschemas.jsonld | 8 +-- data/itagplot/itagplotbioschemas.jsonld | 2 +- data/italics/italicsbioschemas.jsonld | 4 +- data/itar/itarbioschemas.jsonld | 12 ++--- .../iterativebmabioschemas.jsonld | 4 +- .../iterativebmasurvbioschemas.jsonld | 4 +- data/iteremoval/iteremovalbioschemas.jsonld | 4 +- .../iterm-psekncbioschemas.jsonld | 4 +- data/itextmine/itextminebioschemas.jsonld | 2 +- data/itis-psetnc/itis-psetncbioschemas.jsonld | 4 +- data/its2/its2bioschemas.jsonld | 4 +- data/itsonedb/itsonedbbioschemas.jsonld | 8 +-- data/itsxpress/itsxpressbioschemas.jsonld | 4 +- data/iubiq-lys/iubiq-lysbioschemas.jsonld | 4 +- data/iuphar-db/iuphar-dbbioschemas.jsonld | 4 +- .../iupred_ws_jabawsbioschemas.jsonld | 4 +- data/iuta/iutabioschemas.jsonld | 12 ++--- data/ivas/ivasbioschemas.jsonld | 8 +-- data/iview/iviewbioschemas.jsonld | 2 +- data/ivkc-otc/ivkc-otcbioschemas.jsonld | 4 +- data/ivygapse/ivygapsebioschemas.jsonld | 4 +- .../iwepoissonpaperbioschemas.jsonld | 4 +- data/iwtomics/iwtomicsbioschemas.jsonld | 4 +- data/j-circos/j-circosbioschemas.jsonld | 4 +- data/j-express/j-expressbioschemas.jsonld | 4 +- data/j/jbioschemas.jsonld | 4 +- data/jabaws/jabawsbioschemas.jsonld | 2 +- data/jacks/jacksbioschemas.jsonld | 8 +-- data/jadis/jadisbioschemas.jsonld | 4 +- data/jal/jalbioschemas.jsonld | 8 +-- data/jali/jalibioschemas.jsonld | 10 ++-- data/jamberoo/jamberoobioschemas.jsonld | 4 +- data/jamming/jammingbioschemas.jsonld | 4 +- data/jamss/jamssbioschemas.jsonld | 4 +- data/janus/janusbioschemas.jsonld | 4 +- data/jar3d/jar3dbioschemas.jsonld | 4 +- data/jaspar/jasparbioschemas.jsonld | 6 +-- data/jaspar2018/jaspar2018bioschemas.jsonld | 4 +- data/jaspar_api/jaspar_apibioschemas.jsonld | 6 +-- data/jaspar_ws/jaspar_wsbioschemas.jsonld | 4 +- data/jaspardb/jaspardbbioschemas.jsonld | 2 +- data/jaspextract/jaspextractbioschemas.jsonld | 10 ++-- data/jaspscan/jaspscanbioschemas.jsonld | 14 +++--- data/jassa/jassabioschemas.jsonld | 4 +- data/jbiclustge/jbiclustgebioschemas.jsonld | 8 +-- data/jbrowse/jbrowsebioschemas.jsonld | 4 +- data/jcdsa/jcdsabioschemas.jsonld | 10 ++-- .../jchem_for_officebioschemas.jsonld | 4 +- data/jd2stat/jd2statbioschemas.jsonld | 20 ++++---- data/jdftx/jdftxbioschemas.jsonld | 16 +++--- data/jdinac/jdinacbioschemas.jsonld | 4 +- data/jdpd/jdpdbioschemas.jsonld | 4 +- data/jecho/jechobioschemas.jsonld | 2 +- data/jellyfish/jellyfishbioschemas.jsonld | 4 +- data/jensemb/jensembbioschemas.jsonld | 4 +- data/jesam/jesambioschemas.jsonld | 4 +- data/jevtrace/jevtracebioschemas.jsonld | 2 +- .../jgi_genome_portalbioschemas.jsonld | 4 +- data/jiffynet/jiffynetbioschemas.jsonld | 4 +- .../jigcell_run_managerbioschemas.jsonld | 4 +- data/jmrui/jmruibioschemas.jsonld | 2 +- data/jmztab-m/jmztab-mbioschemas.jsonld | 6 +-- data/jmztab/jmztabbioschemas.jsonld | 2 +- data/jnmf/jnmfbioschemas.jsonld | 4 +- data/joa/joabioschemas.jsonld | 16 +++--- data/joda/jodabioschemas.jsonld | 18 +++---- data/joinerml/joinermlbioschemas.jsonld | 16 +++--- data/jointslm/jointslmbioschemas.jsonld | 4 +- data/joy/joybioschemas.jsonld | 4 +- data/jpcr/jpcrbioschemas.jsonld | 2 +- data/jphmm/jphmmbioschemas.jsonld | 2 +- data/jphyloio/jphyloiobioschemas.jsonld | 4 +- data/jpop/jpopbioschemas.jsonld | 2 +- data/jpred_3/jpred_3bioschemas.jsonld | 4 +- .../jpred_ws_jabawsbioschemas.jsonld | 4 +- .../jprofilegridbioschemas.jsonld | 4 +- .../jronn_ws_jabawsbioschemas.jsonld | 4 +- data/jsbml/jsbmlbioschemas.jsonld | 4 +- data/jsparklines/jsparklinesbioschemas.jsonld | 4 +- data/jsphylosvg/jsphylosvgbioschemas.jsonld | 4 +- data/jsquid/jsquidbioschemas.jsonld | 4 +- data/jtraml/jtramlbioschemas.jsonld | 8 +-- data/jump3/jump3bioschemas.jsonld | 4 +- data/junctionseq/junctionseqbioschemas.jsonld | 14 +++--- data/jvarkit/jvarkitbioschemas.jsonld | 4 +- data/jvenn/jvennbioschemas.jsonld | 4 +- data/jvirgel/jvirgelbioschemas.jsonld | 2 +- data/k-branches/k-branchesbioschemas.jsonld | 4 +- data/k-link/k-linkbioschemas.jsonld | 4 +- data/k-map/k-mapbioschemas.jsonld | 4 +- data/k-tope/k-topebioschemas.jsonld | 4 +- data/k2n/k2nbioschemas.jsonld | 4 +- data/kaas/kaasbioschemas.jsonld | 4 +- data/kaiju/kaijubioschemas.jsonld | 8 +-- data/kalign/kalignbioschemas.jsonld | 4 +- data/kanalyze/kanalyzebioschemas.jsonld | 2 +- data/kappa-view4/kappa-view4bioschemas.jsonld | 4 +- data/karyoploter/karyoploterbioschemas.jsonld | 18 +++---- data/kaspspoon/kaspspoonbioschemas.jsonld | 4 +- data/kassiopeia/kassiopeiabioschemas.jsonld | 6 +-- data/kat/katbioschemas.jsonld | 20 ++++---- data/kaustnmf/kaustnmfbioschemas.jsonld | 4 +- data/kaviar/kaviarbioschemas.jsonld | 2 +- data/kb-rank/kb-rankbioschemas.jsonld | 14 +++--- data/kbase/kbasebioschemas.jsonld | 4 +- data/kbat/kbatbioschemas.jsonld | 4 +- data/kcam/kcambioschemas.jsonld | 4 +- data/kcsmart/kcsmartbioschemas.jsonld | 4 +- data/kd4v/kd4vbioschemas.jsonld | 4 +- data/kddn/kddnbioschemas.jsonld | 2 +- data/kdetrees/kdetreesbioschemas.jsonld | 4 +- data/kea/keabioschemas.jsonld | 4 +- data/kebabs/kebabsbioschemas.jsonld | 12 ++--- data/kegarray/kegarraybioschemas.jsonld | 4 +- data/kegdraw/kegdrawbioschemas.jsonld | 4 +- data/kegg/keggbioschemas.jsonld | 4 +- data/kegganim/kegganimbioschemas.jsonld | 4 +- data/kegggraph/kegggraphbioschemas.jsonld | 14 +++--- data/kegglincs/kegglincsbioschemas.jsonld | 8 +-- .../keggorthologybioschemas.jsonld | 8 +-- data/keggparser/keggparserbioschemas.jsonld | 4 +- data/keggprofile/keggprofilebioschemas.jsonld | 8 +-- data/keggrest/keggrestbioschemas.jsonld | 8 +-- data/keller/kellerbioschemas.jsonld | 4 +- .../ketcher-railsbioschemas.jsonld | 4 +- .../key_pathway_minerbioschemas.jsonld | 8 +-- data/kfc/kfcbioschemas.jsonld | 2 +- data/kfits/kfitsbioschemas.jsonld | 8 +-- data/kgem/kgembioschemas.jsonld | 4 +- data/kggseq/kggseqbioschemas.jsonld | 4 +- data/khmer/khmerbioschemas.jsonld | 6 +-- data/kic/kicbioschemas.jsonld | 2 +- data/kimosys/kimosysbioschemas.jsonld | 16 +++--- data/kinact/kinactbioschemas.jsonld | 4 +- data/kinari-web/kinari-webbioschemas.jsonld | 4 +- ...nase_sarfari_blast_searchbioschemas.jsonld | 4 +- ...ari_small_molecule_searchbioschemas.jsonld | 4 +- data/kinasephos/kinasephosbioschemas.jsonld | 4 +- data/kinefold/kinefoldbioschemas.jsonld | 4 +- data/kinfer/kinferbioschemas.jsonld | 4 +- data/kinmap/kinmapbioschemas.jsonld | 6 +-- data/kinvis/kinvisbioschemas.jsonld | 12 ++--- data/kipar/kiparbioschemas.jsonld | 4 +- data/kipper/kipperbioschemas.jsonld | 4 +- data/kismeth/kismethbioschemas.jsonld | 4 +- data/kissde/kissdebioschemas.jsonld | 4 +- data/kit/kitbioschemas.jsonld | 6 +-- data/kiwi/kiwibioschemas.jsonld | 10 ++-- data/klifs/klifsbioschemas.jsonld | 30 +++++------ data/km2gcn/km2gcnbioschemas.jsonld | 8 +-- data/kmasker/kmaskerbioschemas.jsonld | 32 ++++++------ data/kmc/kmcbioschemas.jsonld | 4 +- data/kmcex/kmcexbioschemas.jsonld | 6 +-- data/kmech/kmechbioschemas.jsonld | 4 +- data/kmerfinder/kmerfinderbioschemas.jsonld | 12 ++--- data/kmerpyramid/kmerpyramidbioschemas.jsonld | 4 +- data/kmerstream/kmerstreambioschemas.jsonld | 4 +- data/knet/knetbioschemas.jsonld | 4 +- data/knime/knimebioschemas.jsonld | 8 +-- data/knime4bio/knime4biobioschemas.jsonld | 4 +- data/knoto-id/knoto-idbioschemas.jsonld | 4 +- data/kobamin/kobaminbioschemas.jsonld | 4 +- data/kobas/kobasbioschemas.jsonld | 4 +- data/kobra/kobrabioschemas.jsonld | 4 +- data/kodama/kodamabioschemas.jsonld | 2 +- data/kolmogorov/kolmogorovbioschemas.jsonld | 4 +- data/komodo/komodobioschemas.jsonld | 4 +- data/kosmos/kosmosbioschemas.jsonld | 4 +- data/kpath/kpathbioschemas.jsonld | 4 +- data/kpdgui/kpdguibioschemas.jsonld | 6 +-- data/kplogo/kplogobioschemas.jsonld | 14 +++--- data/krait/kraitbioschemas.jsonld | 4 +- data/krds/krdsbioschemas.jsonld | 4 +- data/krisp/krispbioschemas.jsonld | 16 +++--- data/krona/kronabioschemas.jsonld | 4 +- .../kronaextractbioschemas.jsonld | 4 +- data/kronos/kronosbioschemas.jsonld | 2 +- data/kronrls-mkl/kronrls-mklbioschemas.jsonld | 16 +++--- data/ksea_app/ksea_appbioschemas.jsonld | 12 ++--- data/ksp-puel/ksp-puelbioschemas.jsonld | 4 +- data/ksrepo/ksrepobioschemas.jsonld | 12 ++--- data/kth-package/kth-packagebioschemas.jsonld | 4 +- data/ktreedist/ktreedistbioschemas.jsonld | 4 +- data/kuenm/kuenmbioschemas.jsonld | 14 +++--- data/kups/kupsbioschemas.jsonld | 4 +- data/kvarq/kvarqbioschemas.jsonld | 14 +++--- data/kvik/kvikbioschemas.jsonld | 16 +++--- data/kwip/kwipbioschemas.jsonld | 20 ++++---- .../kymoanalyzerbioschemas.jsonld | 10 ++-- data/kymorod/kymorodbioschemas.jsonld | 4 +- data/l-measure/l-measurebioschemas.jsonld | 4 +- data/l1kdeconv/l1kdeconvbioschemas.jsonld | 4 +- data/l2l/l2lbioschemas.jsonld | 4 +- data/la-images/la-imagesbioschemas.jsonld | 8 +-- data/lab7/lab7bioschemas.jsonld | 4 +- .../ladderfinderbioschemas.jsonld | 2 +- data/lahedes/lahedesbioschemas.jsonld | 4 +- data/lailaps-qsm/lailaps-qsmbioschemas.jsonld | 4 +- data/lailaps/lailapsbioschemas.jsonld | 8 +-- data/lailapsipk/lailapsipkbioschemas.jsonld | 8 +-- data/laj/lajbioschemas.jsonld | 4 +- data/laj_1/laj_1bioschemas.jsonld | 4 +- data/lakemorpho/lakemorphobioschemas.jsonld | 12 ++--- data/lalign/lalignbioschemas.jsonld | 4 +- data/lalign_sib/lalign_sibbioschemas.jsonld | 4 +- data/lambda/lambdabioschemas.jsonld | 4 +- data/lamp/lampbioschemas.jsonld | 12 ++--- data/lanceletdb/lanceletdbbioschemas.jsonld | 8 +-- data/lara/larabioschemas.jsonld | 12 ++--- data/larva/larvabioschemas.jsonld | 8 +-- data/larvalign/larvalignbioschemas.jsonld | 10 ++-- data/laser/laserbioschemas.jsonld | 4 +- data/lassim/lassimbioschemas.jsonld | 10 ++-- data/lastz/lastzbioschemas.jsonld | 4 +- data/layers/layersbioschemas.jsonld | 4 +- data/lbe/lbebioschemas.jsonld | 6 +-- data/lca/lcabioschemas.jsonld | 4 +- data/lcmix/lcmixbioschemas.jsonld | 4 +- data/ld_select/ld_selectbioschemas.jsonld | 4 +- data/lda/ldabioschemas.jsonld | 4 +- data/ldblock/ldblockbioschemas.jsonld | 4 +- data/ldlink/ldlinkbioschemas.jsonld | 4 +- data/ldpac/ldpacbioschemas.jsonld | 8 +-- data/ldso/ldsobioschemas.jsonld | 4 +- data/lea/leabioschemas.jsonld | 8 +-- .../leafoptimizerbioschemas.jsonld | 4 +- data/learncoil/learncoilbioschemas.jsonld | 4 +- data/learnpopgen/learnpopgenbioschemas.jsonld | 12 ++--- data/lebibipqp/lebibipqpbioschemas.jsonld | 4 +- data/ledpred/ledpredbioschemas.jsonld | 8 +-- data/legiolist/legiolistbioschemas.jsonld | 12 ++--- data/legumeip/legumeipbioschemas.jsonld | 2 +- data/leishindb/leishindbbioschemas.jsonld | 2 +- data/lemon-tree/lemon-treebioschemas.jsonld | 4 +- data/leon/leonbioschemas.jsonld | 2 +- data/leproma/lepromabioschemas.jsonld | 4 +- data/lfa/lfabioschemas.jsonld | 16 +++--- data/lfmm/lfmmbioschemas.jsonld | 4 +- data/lfpy/lfpybioschemas.jsonld | 4 +- data/lfqc/lfqcbioschemas.jsonld | 4 +- data/lga/lgabioschemas.jsonld | 4 +- data/lgicdb/lgicdbbioschemas.jsonld | 4 +- data/lgsfaligner/lgsfalignerbioschemas.jsonld | 4 +- data/libfid/libfidbioschemas.jsonld | 4 +- data/libipaca/libipacabioschemas.jsonld | 2 +- data/libmaus/libmausbioschemas.jsonld | 4 +- data/libmgf/libmgfbioschemas.jsonld | 4 +- data/libmsym/libmsymbioschemas.jsonld | 4 +- data/libra/librabioschemas.jsonld | 4 +- data/libra_k-mer/libra_k-merbioschemas.jsonld | 18 +++---- data/libralign/libralignbioschemas.jsonld | 4 +- .../libroadrunnerbioschemas.jsonld | 4 +- data/libsbml/libsbmlbioschemas.jsonld | 4 +- data/licebase/licebasebioschemas.jsonld | 6 +-- data/lichee/licheebioschemas.jsonld | 2 +- data/lichem/lichembioschemas.jsonld | 14 +++--- .../lifeexplorerbioschemas.jsonld | 4 +- data/lifemap/lifemapbioschemas.jsonld | 2 +- .../lifewatchgreecebioschemas.jsonld | 4 +- data/ligalign/ligalignbioschemas.jsonld | 4 +- data/ligandrna/ligandrnabioschemas.jsonld | 8 +-- data/ligap/ligapbioschemas.jsonld | 4 +- data/lightcpg/lightcpgbioschemas.jsonld | 24 ++++----- data/lightdock/lightdockbioschemas.jsonld | 4 +- data/lighter/lighterbioschemas.jsonld | 4 +- data/ligmerge/ligmergebioschemas.jsonld | 4 +- data/ligplot/ligplotbioschemas.jsonld | 4 +- data/ligsearch/ligsearchbioschemas.jsonld | 4 +- data/likeltd/likeltdbioschemas.jsonld | 2 +- data/lilikoi/lilikoibioschemas.jsonld | 14 +++--- data/limani/limanibioschemas.jsonld | 4 +- data/limix/limixbioschemas.jsonld | 4 +- data/limma/limmabioschemas.jsonld | 20 ++++---- data/limmagui/limmaguibioschemas.jsonld | 22 ++++---- data/limmarp/limmarpbioschemas.jsonld | 2 +- data/limtox/limtoxbioschemas.jsonld | 4 +- data/linclust/linclustbioschemas.jsonld | 2 +- .../lincrna_predictbioschemas.jsonld | 4 +- .../lincs_canvas_browserbioschemas.jsonld | 18 +++---- data/lincsnp/lincsnpbioschemas.jsonld | 10 ++-- data/lindna/lindnabioschemas.jsonld | 12 ++--- .../lineagepulsebioschemas.jsonld | 4 +- data/linkage/linkagebioschemas.jsonld | 8 +-- data/linkcomm/linkcommbioschemas.jsonld | 4 +- .../linked_registriesbioschemas.jsonld | 16 +++--- data/linkedomics/linkedomicsbioschemas.jsonld | 8 +-- data/linnorm/linnormbioschemas.jsonld | 8 +-- data/lion-web/lion-webbioschemas.jsonld | 8 +-- data/lipid_maps/lipid_mapsbioschemas.jsonld | 4 +- .../lipid_mini-onbioschemas.jsonld | 6 +-- data/lipidex/lipidexbioschemas.jsonld | 8 +-- .../lipidmatch_normalizerbioschemas.jsonld | 14 +++--- .../lipidwrapperbioschemas.jsonld | 10 ++-- .../lipidxplorerbioschemas.jsonld | 2 +- data/liplike/liplikebioschemas.jsonld | 8 +-- data/lipo/lipobioschemas.jsonld | 4 +- data/liquid/liquidbioschemas.jsonld | 2 +- .../liquidassociationbioschemas.jsonld | 2 +- data/lise/lisebioschemas.jsonld | 2 +- .../listannotationbioschemas.jsonld | 4 +- data/listor/listorbioschemas.jsonld | 16 +++--- .../litinspectorbioschemas.jsonld | 4 +- .../litpathexplorerbioschemas.jsonld | 2 +- data/livebench/livebenchbioschemas.jsonld | 4 +- data/lmap/lmapbioschemas.jsonld | 4 +- data/lmdme/lmdmebioschemas.jsonld | 16 +++--- data/lme4/lme4bioschemas.jsonld | 4 +- data/lme4qtl/lme4qtlbioschemas.jsonld | 10 ++-- data/lmgene/lmgenebioschemas.jsonld | 8 +-- data/lmm-lasso/lmm-lassobioschemas.jsonld | 4 +- data/lmm2met/lmm2metbioschemas.jsonld | 14 +++--- data/lnatools/lnatoolsbioschemas.jsonld | 8 +-- data/lncident/lncidentbioschemas.jsonld | 2 +- data/lncipedia/lncipediabioschemas.jsonld | 4 +- data/lncrnadb/lncrnadbbioschemas.jsonld | 4 +- data/lncrnator/lncrnatorbioschemas.jsonld | 4 +- data/lnctar/lnctarbioschemas.jsonld | 4 +- data/lncvar/lncvarbioschemas.jsonld | 2 +- data/lnetwork/lnetworkbioschemas.jsonld | 4 +- data/lnsignal/lnsignalbioschemas.jsonld | 2 +- .../load_multifastqbioschemas.jsonld | 4 +- data/lobo/lobobioschemas.jsonld | 4 +- data/lobstahs/lobstahsbioschemas.jsonld | 12 ++--- data/lobstr/lobstrbioschemas.jsonld | 4 +- data/localcider/localciderbioschemas.jsonld | 18 +++---- data/localizome/localizomebioschemas.jsonld | 2 +- data/localmove/localmovebioschemas.jsonld | 4 +- data/locarna-p/locarna-pbioschemas.jsonld | 38 +++++++------- data/locarna/locarnabioschemas.jsonld | 18 +++---- data/locate/locatebioschemas.jsonld | 4 +- data/locdb/locdbbioschemas.jsonld | 4 +- data/lochap/lochapbioschemas.jsonld | 4 +- data/loci2path/loci2pathbioschemas.jsonld | 4 +- data/locnes/locnesbioschemas.jsonld | 4 +- data/locp/locpbioschemas.jsonld | 8 +-- data/loctree3/loctree3bioschemas.jsonld | 12 ++--- data/locus/locusbioschemas.jsonld | 4 +- .../locusexplorerbioschemas.jsonld | 4 +- data/locusmap/locusmapbioschemas.jsonld | 4 +- data/lodgwas/lodgwasbioschemas.jsonld | 4 +- data/logicfs/logicfsbioschemas.jsonld | 2 +- data/logiqa/logiqabioschemas.jsonld | 14 +++--- data/logitt/logittbioschemas.jsonld | 2 +- data/logminer/logminerbioschemas.jsonld | 4 +- data/logobar/logobarbioschemas.jsonld | 2 +- data/logoddslogo/logoddslogobioschemas.jsonld | 2 +- data/logol/logolbioschemas.jsonld | 2 +- data/logolas/logolasbioschemas.jsonld | 4 +- data/logomaker/logomakerbioschemas.jsonld | 4 +- data/loinc2hpo/loinc2hpobioschemas.jsonld | 8 +-- data/lol/lolbioschemas.jsonld | 4 +- data/lola/lolabioschemas.jsonld | 8 +-- data/lolaweb/lolawebbioschemas.jsonld | 4 +- data/lomets2/lomets2bioschemas.jsonld | 24 ++++----- ...ne-diaphyseal-csg-toolkitbioschemas.jsonld | 4 +- data/longgwas/longgwasbioschemas.jsonld | 2 +- data/longislnd/longislndbioschemas.jsonld | 14 +++--- data/longo/longobioschemas.jsonld | 4 +- data/lookseq/lookseqbioschemas.jsonld | 4 +- data/looping/loopingbioschemas.jsonld | 4 +- data/loqum/loqumbioschemas.jsonld | 4 +- data/lord/lordbioschemas.jsonld | 2 +- data/lorean/loreanbioschemas.jsonld | 12 ++--- data/lors/lorsbioschemas.jsonld | 4 +- data/lot/lotbioschemas.jsonld | 2 +- data/lovd/lovdbioschemas.jsonld | 8 +-- .../lowcomplexitybioschemas.jsonld | 4 +- data/lowmaca/lowmacabioschemas.jsonld | 30 +++++------ data/lox/loxbioschemas.jsonld | 2 +- data/lpe/lpebioschemas.jsonld | 4 +- data/lpeadj/lpeadjbioschemas.jsonld | 8 +-- data/lpicom/lpicombioschemas.jsonld | 2 +- data/lpnet/lpnetbioschemas.jsonld | 4 +- data/lpsymphony/lpsymphonybioschemas.jsonld | 8 +-- data/lrc/lrcbioschemas.jsonld | 4 +- data/lrcstats/lrcstatsbioschemas.jsonld | 4 +- data/lrensemble/lrensemblebioschemas.jsonld | 4 +- data/lriscan/lriscanbioschemas.jsonld | 4 +- data/lrpath/lrpathbioschemas.jsonld | 4 +- data/lrrr/lrrrbioschemas.jsonld | 4 +- data/lrrsearch/lrrsearchbioschemas.jsonld | 4 +- data/ls-snp/ls-snpbioschemas.jsonld | 4 +- data/lsd/lsdbioschemas.jsonld | 4 +- data/lskb/lskbbioschemas.jsonld | 4 +- data/lspr/lsprbioschemas.jsonld | 4 +- data/lst/lstbioschemas.jsonld | 4 +- .../lter-marechiarabioschemas.jsonld | 4 +- data/ltrtype/ltrtypebioschemas.jsonld | 12 ++--- data/luca/lucabioschemas.jsonld | 4 +- data/lucegene/lucegenebioschemas.jsonld | 4 +- data/luciphor2/luciphor2bioschemas.jsonld | 4 +- data/lucy/lucybioschemas.jsonld | 4 +- data/lumi/lumibioschemas.jsonld | 2 +- data/lunggens/lunggensbioschemas.jsonld | 16 +++--- data/lutefisk/lutefiskbioschemas.jsonld | 4 +- data/lux_score/lux_scorebioschemas.jsonld | 4 +- data/lwgv/lwgvbioschemas.jsonld | 4 +- data/lymphoseq/lymphoseqbioschemas.jsonld | 8 +-- ...nx_multi-gene_annotationsbioschemas.jsonld | 4 +- data/m-bison/m-bisonbioschemas.jsonld | 4 +- data/m-iolite/m-iolitebioschemas.jsonld | 6 +-- .../m1cr0b1al1z3rbioschemas.jsonld | 26 +++++----- data/m2lite/m2litebioschemas.jsonld | 4 +- data/m3/m3bioschemas.jsonld | 2 +- data/m3d/m3dbioschemas.jsonld | 8 +-- data/m3drop/m3dropbioschemas.jsonld | 2 +- data/m4t/m4tbioschemas.jsonld | 4 +- data/m6acomet/m6acometbioschemas.jsonld | 20 ++++---- data/m_ia/m_iabioschemas.jsonld | 4 +- data/ma/mabioschemas.jsonld | 4 +- data/ma2c/ma2cbioschemas.jsonld | 4 +- data/maanova/maanovabioschemas.jsonld | 4 +- data/macaron/macaronbioschemas.jsonld | 14 +++--- data/macat/macatbioschemas.jsonld | 10 ++-- data/mach-admix/mach-admixbioschemas.jsonld | 4 +- data/mach/machbioschemas.jsonld | 14 +++--- data/mach2dat/mach2datbioschemas.jsonld | 4 +- data/mach2qtl/mach2qtlbioschemas.jsonld | 4 +- data/macie/maciebioschemas.jsonld | 4 +- data/macleaps/macleapsbioschemas.jsonld | 4 +- data/macorrplot/macorrplotbioschemas.jsonld | 4 +- data/macpet/macpetbioschemas.jsonld | 4 +- data/macsims/macsimsbioschemas.jsonld | 2 +- data/macsyfinder/macsyfinderbioschemas.jsonld | 8 +-- data/madap/madapbioschemas.jsonld | 4 +- data/madcat/madcatbioschemas.jsonld | 4 +- data/made4/made4bioschemas.jsonld | 12 ++--- data/madora/madorabioschemas.jsonld | 4 +- data/madseq/madseqbioschemas.jsonld | 8 +-- data/maf/mafbioschemas.jsonld | 2 +- data/mafft-dash/mafft-dashbioschemas.jsonld | 26 +++++----- data/mafft/mafftbioschemas.jsonld | 4 +- data/mafft_ebi/mafft_ebibioschemas.jsonld | 4 +- data/mafsnp/mafsnpbioschemas.jsonld | 4 +- data/maftools/maftoolsbioschemas.jsonld | 8 +-- data/magallanes/magallanesbioschemas.jsonld | 24 ++++----- .../mage-ml_visualizebioschemas.jsonld | 4 +- data/mageckflute/mageckflutebioschemas.jsonld | 2 +- data/magecomet/magecometbioschemas.jsonld | 2 +- data/magellan/magellanbioschemas.jsonld | 18 +++---- .../maggottrackerbioschemas.jsonld | 2 +- data/magi/magibioschemas.jsonld | 2 +- data/magia2/magia2bioschemas.jsonld | 4 +- data/magic/magicbioschemas.jsonld | 4 +- data/magic_ms/magic_msbioschemas.jsonld | 4 +- data/magic_tool/magic_toolbioschemas.jsonld | 2 +- data/magicviewer/magicviewerbioschemas.jsonld | 8 +-- data/magna/magnabioschemas.jsonld | 4 +- data/magnet/magnetbioschemas.jsonld | 2 +- data/maigespack/maigespackbioschemas.jsonld | 4 +- data/maistas/maistasbioschemas.jsonld | 8 +-- data/mait/maitbioschemas.jsonld | 10 ++-- data/majiq-spel/majiq-spelbioschemas.jsonld | 4 +- data/makecdfenv/makecdfenvbioschemas.jsonld | 4 +- data/makenucseq/makenucseqbioschemas.jsonld | 18 +++---- data/makeprotseq/makeprotseqbioschemas.jsonld | 8 +-- data/maker/makerbioschemas.jsonld | 12 ++--- data/maketssdist/maketssdistbioschemas.jsonld | 4 +- data/mala/malabioschemas.jsonld | 4 +- data/malakite/malakitebioschemas.jsonld | 4 +- ...ata_small_molecule_searchbioschemas.jsonld | 4 +- data/malax/malaxbioschemas.jsonld | 8 +-- .../maldipepquantbioschemas.jsonld | 4 +- data/maldsoft/maldsoftbioschemas.jsonld | 8 +-- data/maltcms/maltcmsbioschemas.jsonld | 4 +- ...mammalian_gene_collectionbioschemas.jsonld | 4 +- data/mamodel/mamodelbioschemas.jsonld | 4 +- data/mamphea/mampheabioschemas.jsonld | 4 +- .../manhattan_harvesterbioschemas.jsonld | 18 +++---- data/manor/manorbioschemas.jsonld | 2 +- data/manorm/manormbioschemas.jsonld | 4 +- data/manta/mantabioschemas.jsonld | 8 +-- data/mantis/mantisbioschemas.jsonld | 8 +-- data/mantra/mantrabioschemas.jsonld | 4 +- data/mapanalyzer/mapanalyzerbioschemas.jsonld | 6 +-- data/mapdamage/mapdamagebioschemas.jsonld | 4 +- data/mapdia/mapdiabioschemas.jsonld | 4 +- data/mapdisto/mapdistobioschemas.jsonld | 4 +- data/mapexr/mapexrbioschemas.jsonld | 8 +-- data/mapi/mapibioschemas.jsonld | 16 +++--- data/mapkl/mapklbioschemas.jsonld | 4 +- data/mapman/mapmanbioschemas.jsonld | 4 +- data/mapmi/mapmibioschemas.jsonld | 4 +- data/mapoptics/mapopticsbioschemas.jsonld | 4 +- data/mapp/mappbioschemas.jsonld | 4 +- .../mapping_toolbioschemas.jsonld | 4 +- .../mappinghsp4taxobioschemas.jsonld | 2 +- data/mappis/mappisbioschemas.jsonld | 4 +- data/mappop/mappopbioschemas.jsonld | 4 +- .../mapredictdscbioschemas.jsonld | 4 +- data/maps/mapsbioschemas.jsonld | 14 +++--- data/mapscape/mapscapebioschemas.jsonld | 4 +- data/mapview/mapviewbioschemas.jsonld | 8 +-- data/maq/maqbioschemas.jsonld | 12 ++--- data/marcat/marcatbioschemas.jsonld | 2 +- data/marcoil/marcoilbioschemas.jsonld | 4 +- data/mardb/mardbbioschemas.jsonld | 4 +- data/marea/mareabioschemas.jsonld | 2 +- .../marginalcausalitybioschemas.jsonld | 4 +- data/mariboes/mariboesbioschemas.jsonld | 4 +- .../markduplicates_ipbioschemas.jsonld | 4 +- data/markophylo/markophylobioschemas.jsonld | 4 +- data/markus/markusbioschemas.jsonld | 4 +- data/marmoset/marmosetbioschemas.jsonld | 8 +-- data/marna/marnabioschemas.jsonld | 16 +++--- data/marray/marraybioschemas.jsonld | 4 +- data/marref/marrefbioschemas.jsonld | 4 +- data/marscan/marscanbioschemas.jsonld | 12 ++--- data/marspred/marspredbioschemas.jsonld | 2 +- data/martini/martinibioschemas.jsonld | 4 +- data/martview/martviewbioschemas.jsonld | 4 +- data/marv/marvbioschemas.jsonld | 12 ++--- data/masc/mascbioschemas.jsonld | 2 +- data/mascot/mascotbioschemas.jsonld | 4 +- data/mascot2xml/mascot2xmlbioschemas.jsonld | 4 +- .../mascot_parserbioschemas.jsonld | 4 +- .../mascotdatfilebioschemas.jsonld | 4 +- data/mascp_gator/mascp_gatorbioschemas.jsonld | 4 +- data/mase/masebioschemas.jsonld | 4 +- data/masigpro/masigprobioschemas.jsonld | 8 +-- .../maskambignucbioschemas.jsonld | 14 +++--- .../maskambigprotbioschemas.jsonld | 10 ++-- data/maskbad/maskbadbioschemas.jsonld | 4 +- data/maskfeat/maskfeatbioschemas.jsonld | 18 +++---- data/maskseq/maskseqbioschemas.jsonld | 16 +++--- data/massarray/massarraybioschemas.jsonld | 6 +-- data/masschroq/masschroqbioschemas.jsonld | 4 +- .../masshunter_file_readerbioschemas.jsonld | 2 +- data/massifquant/massifquantbioschemas.jsonld | 4 +- data/massir/massirbioschemas.jsonld | 26 +++++----- data/massmap/massmapbioschemas.jsonld | 16 +++--- data/massmatrix/massmatrixbioschemas.jsonld | 4 +- data/masspix/masspixbioschemas.jsonld | 14 +++--- data/massspecapi/massspecapibioschemas.jsonld | 4 +- .../massspecwaveletbioschemas.jsonld | 8 +-- data/masstrix/masstrixbioschemas.jsonld | 4 +- data/massytools/massytoolsbioschemas.jsonld | 4 +- data/mast/mastbioschemas.jsonld | 4 +- data/mastr/mastrbioschemas.jsonld | 8 +-- .../masttreedistbioschemas.jsonld | 2 +- data/masurca/masurcabioschemas.jsonld | 4 +- data/matapax/matapaxbioschemas.jsonld | 2 +- data/matataki/matatakibioschemas.jsonld | 4 +- data/matav3/matav3bioschemas.jsonld | 4 +- data/match/matchbioschemas.jsonld | 4 +- data/match_box/match_boxbioschemas.jsonld | 14 +++--- data/matchbox/matchboxbioschemas.jsonld | 6 +-- .../matcher-api-ebibioschemas.jsonld | 2 +- data/matcher-ebi/matcher-ebibioschemas.jsonld | 4 +- data/matcher/matcherbioschemas.jsonld | 10 ++-- .../matchmaker_exchangebioschemas.jsonld | 18 +++---- data/matchminer/matchminerbioschemas.jsonld | 4 +- data/matcol/matcolbioschemas.jsonld | 4 +- data/mathdamp/mathdampbioschemas.jsonld | 4 +- data/matras/matrasbioschemas.jsonld | 4 +- .../matrix-clusteringbioschemas.jsonld | 8 +-- data/matrix_eqtl/matrix_eqtlbioschemas.jsonld | 4 +- data/matrixcgh/matrixcghbioschemas.jsonld | 4 +- data/matrixdb/matrixdbbioschemas.jsonld | 8 +-- .../matrixepistasisbioschemas.jsonld | 4 +- data/matt/mattbioschemas.jsonld | 4 +- data/mattbench/mattbenchbioschemas.jsonld | 4 +- data/matter/matterbioschemas.jsonld | 4 +- data/mattfa/mattfabioschemas.jsonld | 18 +++---- data/maturebayes/maturebayesbioschemas.jsonld | 4 +- data/mauve/mauvebioschemas.jsonld | 2 +- data/mavisto/mavistobioschemas.jsonld | 4 +- data/maxalign/maxalignbioschemas.jsonld | 2 +- data/maxcluster/maxclusterbioschemas.jsonld | 12 ++--- data/maxcounts/maxcountsbioschemas.jsonld | 4 +- data/maxflow/maxflowbioschemas.jsonld | 4 +- data/maxic-q/maxic-qbioschemas.jsonld | 2 +- ...lary-sinus-quantificationbioschemas.jsonld | 2 +- data/maxlink/maxlinkbioschemas.jsonld | 4 +- data/maxocc/maxoccbioschemas.jsonld | 4 +- data/maxreport/maxreportbioschemas.jsonld | 6 +-- .../maxsnippetmodelbioschemas.jsonld | 4 +- data/maxsprout/maxsproutbioschemas.jsonld | 8 +-- data/mba/mbabioschemas.jsonld | 2 +- data/mbamethyl/mbamethylbioschemas.jsonld | 8 +-- data/mbased/mbasedbioschemas.jsonld | 4 +- data/mbbc/mbbcbioschemas.jsonld | 4 +- data/mbcb/mbcbbioschemas.jsonld | 4 +- data/mbgd/mbgdbioschemas.jsonld | 4 +- data/mblastall/mblastallbioschemas.jsonld | 2 +- data/mbpcr/mbpcrbioschemas.jsonld | 6 +-- data/mbppred/mbppredbioschemas.jsonld | 4 +- data/mbr/mbrbioschemas.jsonld | 4 +- data/mbrole/mbrolebioschemas.jsonld | 2 +- data/mbstar/mbstarbioschemas.jsonld | 2 +- data/mbttest/mbttestbioschemas.jsonld | 4 +- data/mbv/mbvbioschemas.jsonld | 4 +- .../mbwa_wrapperbioschemas.jsonld | 4 +- data/mcbiclust/mcbiclustbioschemas.jsonld | 6 +-- data/mccortex/mccortexbioschemas.jsonld | 4 +- data/mcdgpa/mcdgpabioschemas.jsonld | 4 +- data/mcf/mcfbioschemas.jsonld | 2 +- data/mcgh/mcghbioschemas.jsonld | 4 +- .../mcmc_ibdfinderbioschemas.jsonld | 4 +- .../mcmccodonsitebioschemas.jsonld | 4 +- data/mcode/mcodebioschemas.jsonld | 4 +- data/mcpath/mcpathbioschemas.jsonld | 2 +- data/mcpd/mcpdbioschemas.jsonld | 2 +- data/mcpep/mcpepbioschemas.jsonld | 4 +- data/mcqfold/mcqfoldbioschemas.jsonld | 4 +- data/mcrestimate/mcrestimatebioschemas.jsonld | 4 +- data/mcsea/mcseabioschemas.jsonld | 4 +- data/mcsm-ab/mcsm-abbioschemas.jsonld | 8 +-- data/mcsm-ppi2/mcsm-ppi2bioschemas.jsonld | 32 ++++++------ data/mcsm_na/mcsm_nabioschemas.jsonld | 20 ++++---- data/mcsnp/mcsnpbioschemas.jsonld | 4 +- data/mctbi/mctbibioschemas.jsonld | 12 ++--- data/mdcs/mdcsbioschemas.jsonld | 4 +- data/mdd-carb/mdd-carbbioschemas.jsonld | 4 +- data/mddglutar/mddglutarbioschemas.jsonld | 6 +-- data/mddmd/mddmdbioschemas.jsonld | 4 +- data/mdgsa/mdgsabioschemas.jsonld | 34 ++++++------- data/mdi-gpu/mdi-gpubioschemas.jsonld | 4 +- data/mdmoby/mdmobybioschemas.jsonld | 4 +- data/mdp/mdpbioschemas.jsonld | 4 +- data/mdpbiome/mdpbiomebioschemas.jsonld | 16 +++--- data/mdpfinder/mdpfinderbioschemas.jsonld | 4 +- data/mdqc/mdqcbioschemas.jsonld | 4 +- data/mdscan/mdscanbioschemas.jsonld | 4 +- data/mdsine/mdsinebioschemas.jsonld | 4 +- data/mdts/mdtsbioschemas.jsonld | 4 +- data/meadmix/meadmixbioschemas.jsonld | 4 +- data/meaga/meagabioschemas.jsonld | 4 +- data/meal/mealbioschemas.jsonld | 4 +- data/means/meansbioschemas.jsonld | 10 ++-- data/mebs/mebsbioschemas.jsonld | 4 +- data/mecat/mecatbioschemas.jsonld | 8 +-- data/mechrna/mechrnabioschemas.jsonld | 4 +- data/medecom/medecombioschemas.jsonld | 22 ++++---- data/medeller/medellerbioschemas.jsonld | 4 +- data/medips/medipsbioschemas.jsonld | 12 ++--- .../medline_rankerbioschemas.jsonld | 12 ++--- .../medlinerankerbioschemas.jsonld | 4 +- data/medme/medmebioschemas.jsonld | 4 +- data/medock/medockbioschemas.jsonld | 4 +- data/medsavant/medsavantbioschemas.jsonld | 2 +- data/medusa/medusabioschemas.jsonld | 8 +-- .../medusa_motifbioschemas.jsonld | 4 +- data/medusa_pcr/medusa_pcrbioschemas.jsonld | 4 +- data/medyan/medyanbioschemas.jsonld | 6 +-- data/meffil/meffilbioschemas.jsonld | 4 +- data/mefit/mefitbioschemas.jsonld | 18 +++---- data/mega/megabioschemas.jsonld | 2 +- .../megadock-webbioschemas.jsonld | 8 +-- data/megamapper/megamapperbioschemas.jsonld | 4 +- data/megamerger/megamergerbioschemas.jsonld | 4 +- .../megamerger_ws_husarbioschemas.jsonld | 4 +- data/megan/meganbioschemas.jsonld | 4 +- data/megan6/megan6bioschemas.jsonld | 4 +- data/megante/megantebioschemas.jsonld | 12 ++--- data/megraft/megraftbioschemas.jsonld | 4 +- data/megu/megubioschemas.jsonld | 4 +- data/meigo/meigobioschemas.jsonld | 8 +-- data/meigor/meigorbioschemas.jsonld | 8 +-- data/melanie/melaniebioschemas.jsonld | 4 +- .../melanomaminebioschemas.jsonld | 12 ++--- data/meltdb/meltdbbioschemas.jsonld | 6 +-- data/melting/meltingbioschemas.jsonld | 4 +- data/mem-adsvm/mem-adsvmbioschemas.jsonld | 8 +-- data/mem/membioschemas.jsonld | 6 +-- data/membplugin/membpluginbioschemas.jsonld | 4 +- data/membrain/membrainbioschemas.jsonld | 4 +- data/meme/memebioschemas.jsonld | 2 +- data/meme_meme/meme_memebioschemas.jsonld | 2 +- data/meme_suite/meme_suitebioschemas.jsonld | 4 +- data/memgen/memgenbioschemas.jsonld | 4 +- data/memhdx/memhdxbioschemas.jsonld | 4 +- data/memloci/memlocibioschemas.jsonld | 6 +-- data/memo/memobioschemas.jsonld | 2 +- data/memo_cancer/memo_cancerbioschemas.jsonld | 4 +- data/memoir/memoirbioschemas.jsonld | 4 +- data/memosys/memosysbioschemas.jsonld | 4 +- data/memotif/memotifbioschemas.jsonld | 4 +- data/mempype/mempypebioschemas.jsonld | 4 +- data/memtype-2l/memtype-2lbioschemas.jsonld | 2 +- data/mendel/mendelbioschemas.jsonld | 4 +- data/mendelian/mendelianbioschemas.jsonld | 16 +++--- .../mendelianrandomizationbioschemas.jsonld | 8 +-- data/mendelmd/mendelmdbioschemas.jsonld | 4 +- data/meneco/menecobioschemas.jsonld | 16 +++--- data/mentha/menthabioschemas.jsonld | 8 +-- .../menu-builderbioschemas.jsonld | 4 +- data/mepsa/mepsabioschemas.jsonld | 2 +- data/merav/meravbioschemas.jsonld | 2 +- .../mercator_plantbioschemas.jsonld | 4 +- data/mergemaid/mergemaidbioschemas.jsonld | 8 +-- data/mergeomics/mergeomicsbioschemas.jsonld | 10 ++-- .../mergeomics_pipelinebioschemas.jsonld | 4 +- data/merger/mergerbioschemas.jsonld | 10 ++-- ...rgeslidingwindowsclustersbioschemas.jsonld | 4 +- .../mergetranscriptlistsbioschemas.jsonld | 4 +- data/merip-pf/merip-pfbioschemas.jsonld | 12 ++--- data/merit/meritbioschemas.jsonld | 8 +-- data/merlin/merlinbioschemas.jsonld | 4 +- data/mermaid/mermaidbioschemas.jsonld | 10 ++-- data/merops/meropsbioschemas.jsonld | 4 +- .../merops_blastbioschemas.jsonld | 6 +-- data/merrill/merrillbioschemas.jsonld | 4 +- data/mesadb/mesadbbioschemas.jsonld | 10 ++-- data/meshdbi/meshdbibioschemas.jsonld | 6 +-- data/meshes/meshesbioschemas.jsonld | 6 +-- data/meshr/meshrbioschemas.jsonld | 28 +++++------ data/meshsim/meshsimbioschemas.jsonld | 8 +-- data/mesmer/mesmerbioschemas.jsonld | 4 +- data/messina/messinabioschemas.jsonld | 14 +++--- data/met/metbioschemas.jsonld | 2 +- .../meta-4mcpredbioschemas.jsonld | 16 +++--- data/meta-basic/meta-basicbioschemas.jsonld | 4 +- data/meta-gecko/meta-geckobioschemas.jsonld | 8 +-- data/meta-meme/meta-memebioschemas.jsonld | 4 +- data/meta-pipe/meta-pipebioschemas.jsonld | 6 +-- data/meta-snp/meta-snpbioschemas.jsonld | 24 ++++----- data/meta/metabioschemas.jsonld | 16 +++--- data/metaarray/metaarraybioschemas.jsonld | 2 +- data/metab/metabbioschemas.jsonld | 2 +- data/metabin/metabinbioschemas.jsonld | 4 +- data/metabiome/metabiomebioschemas.jsonld | 4 +- data/metabnorm/metabnormbioschemas.jsonld | 4 +- data/metabocraft/metabocraftbioschemas.jsonld | 4 +- data/metabodiff/metabodiffbioschemas.jsonld | 2 +- .../metabolic_network_sglbioschemas.jsonld | 4 +- .../metabolitedetectorbioschemas.jsonld | 8 +-- .../metabolomexchangebioschemas.jsonld | 4 +- .../metabolomicstoolsbioschemas.jsonld | 16 +++--- data/metabomxtr/metabomxtrbioschemas.jsonld | 8 +-- .../metabosearchbioschemas.jsonld | 4 +- .../metabosignalbioschemas.jsonld | 16 +++--- data/metabridge/metabridgebioschemas.jsonld | 4 +- data/metacca/metaccabioschemas.jsonld | 30 +++++------ data/metacoder/metacoderbioschemas.jsonld | 8 +-- data/metacomp/metacompbioschemas.jsonld | 4 +- data/metacram/metacrambioschemas.jsonld | 4 +- data/metacrop/metacropbioschemas.jsonld | 12 ++--- data/metacyc/metacycbioschemas.jsonld | 4 +- data/metacyto/metacytobioschemas.jsonld | 8 +-- data/metadbsite/metadbsitebioschemas.jsonld | 4 +- data/metadome/metadomebioschemas.jsonld | 4 +- .../metadynminerbioschemas.jsonld | 10 ++-- data/metagene/metagenebioschemas.jsonld | 8 +-- .../metageneannotatorbioschemas.jsonld | 4 +- .../metagenesensebioschemas.jsonld | 12 ++--- .../metagenomefeaturesbioschemas.jsonld | 8 +-- .../metagenomeseqbioschemas.jsonld | 4 +- data/metagenyo/metagenyobioschemas.jsonld | 4 +- .../metagxbreastbioschemas.jsonld | 12 ++--- data/metaimprint/metaimprintbioschemas.jsonld | 4 +- data/metainter/metainterbioschemas.jsonld | 4 +- .../metaldetectorbioschemas.jsonld | 4 +- data/metalionrna/metalionrnabioschemas.jsonld | 4 +- data/metalpdb/metalpdbbioschemas.jsonld | 4 +- data/metals2/metals2bioschemas.jsonld | 4 +- data/metamhc/metamhcbioschemas.jsonld | 4 +- .../metamicrobiomerbioschemas.jsonld | 10 ++-- data/metamis/metamisbioschemas.jsonld | 10 ++-- data/metams/metamsbioschemas.jsonld | 4 +- data/metamylo/metamylobioschemas.jsonld | 6 +-- .../metaneighborbioschemas.jsonld | 4 +- data/metanet/metanetbioschemas.jsonld | 4 +- data/metanetx/metanetxbioschemas.jsonld | 4 +- data/metano/metanobioschemas.jsonld | 4 +- data/metaomgraph/metaomgraphbioschemas.jsonld | 4 +- data/metap/metapbioschemas.jsonld | 4 +- .../metapath_onlinebioschemas.jsonld | 4 +- .../metapathwaysbioschemas.jsonld | 2 +- data/metapepseq/metapepseqbioschemas.jsonld | 4 +- data/metaphlan/metaphlanbioschemas.jsonld | 4 +- data/metaphors/metaphorsbioschemas.jsonld | 4 +- data/metaplab/metaplabbioschemas.jsonld | 4 +- data/metapop/metapopbioschemas.jsonld | 4 +- data/metapred2cs/metapred2csbioschemas.jsonld | 4 +- data/metapsicov/metapsicovbioschemas.jsonld | 4 +- data/metaqc/metaqcbioschemas.jsonld | 2 +- data/metaqtl/metaqtlbioschemas.jsonld | 4 +- data/metaquast/metaquastbioschemas.jsonld | 4 +- data/metaquery/metaquerybioschemas.jsonld | 4 +- data/metaranker/metarankerbioschemas.jsonld | 30 +++++------ data/metascape/metascapebioschemas.jsonld | 8 +-- data/metasel/metaselbioschemas.jsonld | 6 +-- data/metaseq/metaseqbioschemas.jsonld | 4 +- data/metaseqr/metaseqrbioschemas.jsonld | 4 +- data/metashot/metashotbioschemas.jsonld | 4 +- data/metasim/metasimbioschemas.jsonld | 4 +- data/metaskat/metaskatbioschemas.jsonld | 4 +- data/metasnv/metasnvbioschemas.jsonld | 12 ++--- data/metaspades/metaspadesbioschemas.jsonld | 4 +- data/metaspark/metasparkbioschemas.jsonld | 4 +- data/metassimulo/metassimulobioschemas.jsonld | 4 +- data/metastats/metastatsbioschemas.jsonld | 2 +- data/metastudent/metastudentbioschemas.jsonld | 4 +- data/metatreemap/metatreemapbioschemas.jsonld | 4 +- data/metatrend/metatrendbioschemas.jsonld | 4 +- data/metavisitor/metavisitorbioschemas.jsonld | 4 +- data/metaviz/metavizbioschemas.jsonld | 10 ++-- data/metavizr/metavizrbioschemas.jsonld | 14 +++--- data/metax/metaxbioschemas.jsonld | 14 +++--- data/metaxa/metaxabioschemas.jsonld | 4 +- data/metaxa2/metaxa2bioschemas.jsonld | 4 +- data/metccs/metccsbioschemas.jsonld | 4 +- data/metcirc/metcircbioschemas.jsonld | 4 +- data/metdisease/metdiseasebioschemas.jsonld | 4 +- data/metdraw/metdrawbioschemas.jsonld | 4 +- data/metexplore/metexplorebioschemas.jsonld | 8 +-- data/metfamily/metfamilybioschemas.jsonld | 4 +- data/metfrag/metfragbioschemas.jsonld | 4 +- data/metfusion/metfusionbioschemas.jsonld | 4 +- data/methbase/methbasebioschemas.jsonld | 4 +- data/methdb/methdbbioschemas.jsonld | 4 +- data/methimpute/methimputebioschemas.jsonld | 4 +- .../methinheritsimbioschemas.jsonld | 4 +- data/methk/methkbioschemas.jsonld | 4 +- data/methmarker/methmarkerbioschemas.jsonld | 4 +- data/methpat/methpatbioschemas.jsonld | 2 +- data/methped/methpedbioschemas.jsonld | 4 +- data/methpipe/methpipebioschemas.jsonld | 4 +- .../methtargetedngsbioschemas.jsonld | 4 +- data/methvisual/methvisualbioschemas.jsonld | 8 +-- .../methyanalysisbioschemas.jsonld | 2 +- .../methylactionbioschemas.jsonld | 4 +- data/methylaid/methylaidbioschemas.jsonld | 4 +- data/methylcal/methylcalbioschemas.jsonld | 4 +- data/methylcoder/methylcoderbioschemas.jsonld | 4 +- .../methylextractbioschemas.jsonld | 4 +- data/methylgsa/methylgsabioschemas.jsonld | 4 +- .../methylinheritancebioschemas.jsonld | 4 +- data/methylkit/methylkitbioschemas.jsonld | 30 +++++------ data/methylmnm/methylmnmbioschemas.jsonld | 4 +- data/methylomedb/methylomedbbioschemas.jsonld | 4 +- data/methylpipe/methylpipebioschemas.jsonld | 18 +++---- data/methylseekr/methylseekrbioschemas.jsonld | 10 ++-- .../methylseqdesignbioschemas.jsonld | 4 +- data/methylsig/methylsigbioschemas.jsonld | 4 +- data/methylumi/methylumibioschemas.jsonld | 4 +- data/metitree/metitreebioschemas.jsonld | 2 +- data/metlab/metlabbioschemas.jsonld | 16 +++--- data/metmatch/metmatchbioschemas.jsonld | 16 +++--- data/metpc/metpcbioschemas.jsonld | 20 ++++---- data/metstat/metstatbioschemas.jsonld | 4 +- data/mettailor/mettailorbioschemas.jsonld | 4 +- data/mev/mevbioschemas.jsonld | 4 +- data/mexpress/mexpressbioschemas.jsonld | 2 +- data/mfa/mfabioschemas.jsonld | 2 +- data/mfdm/mfdmbioschemas.jsonld | 4 +- data/mfdp/mfdpbioschemas.jsonld | 4 +- data/mflux/mfluxbioschemas.jsonld | 6 +-- data/mfmd/mfmdbioschemas.jsonld | 4 +- data/mfold/mfoldbioschemas.jsonld | 4 +- data/mfpaq/mfpaqbioschemas.jsonld | 4 +- data/mfungd/mfungdbioschemas.jsonld | 4 +- data/mfuzz/mfuzzbioschemas.jsonld | 22 ++++---- data/mgcat/mgcatbioschemas.jsonld | 4 +- data/mgclus/mgclusbioschemas.jsonld | 4 +- data/mgd/mgdbioschemas.jsonld | 4 +- .../mgenomesubtractorbioschemas.jsonld | 4 +- data/mgert/mgertbioschemas.jsonld | 20 ++++---- data/mgfm/mgfmbioschemas.jsonld | 8 +-- data/mgfr/mgfrbioschemas.jsonld | 4 +- data/mgi/mgibioschemas.jsonld | 4 +- data/mgip/mgipbioschemas.jsonld | 4 +- data/mgmapper/mgmapperbioschemas.jsonld | 4 +- data/mgsa/mgsabioschemas.jsonld | 8 +-- data/mgsz/mgszbioschemas.jsonld | 4 +- data/mgx/mgxbioschemas.jsonld | 4 +- data/mhc-np/mhc-npbioschemas.jsonld | 2 +- data/mhc2pred/mhc2predbioschemas.jsonld | 4 +- data/mhccluster/mhcclusterbioschemas.jsonld | 22 ++++---- data/mhcpred/mhcpredbioschemas.jsonld | 2 +- data/mhcseqnet/mhcseqnetbioschemas.jsonld | 12 ++--- data/mi-sim/mi-simbioschemas.jsonld | 2 +- data/miarma-seq/miarma-seqbioschemas.jsonld | 18 +++---- data/mib/mibbioschemas.jsonld | 14 +++--- data/micc/miccbioschemas.jsonld | 4 +- data/micca/miccabioschemas.jsonld | 4 +- .../micelle_makerbioschemas.jsonld | 4 +- data/micheck/micheckbioschemas.jsonld | 4 +- data/michip/michipbioschemas.jsonld | 8 +-- data/mico/micobioschemas.jsonld | 4 +- data/microbegps/microbegpsbioschemas.jsonld | 4 +- .../microbesonlinebioschemas.jsonld | 2 +- ...abase_organisation_micadobioschemas.jsonld | 8 +-- .../microbial_genome_viewerbioschemas.jsonld | 4 +- data/microbiomer/microbiomerbioschemas.jsonld | 4 +- data/microclass/microclassbioschemas.jsonld | 2 +- data/microdor/microdorbioschemas.jsonld | 4 +- .../microerroranalyzerbioschemas.jsonld | 4 +- .../microfootprinterbioschemas.jsonld | 4 +- .../micrographitebioschemas.jsonld | 16 +++--- data/microhibro/microhibrobioschemas.jsonld | 4 +- data/microkit/microkitbioschemas.jsonld | 2 +- .../micromanagerbioschemas.jsonld | 4 +- data/micromummie/micromummiebioschemas.jsonld | 4 +- data/microp/micropbioschemas.jsonld | 2 +- data/micropan/micropanbioschemas.jsonld | 8 +-- .../micropatternbioschemas.jsonld | 4 +- data/micropie/micropiebioschemas.jsonld | 18 +++---- data/micropita/micropitabioschemas.jsonld | 2 +- data/microrna/micrornabioschemas.jsonld | 4 +- data/microrpm/microrpmbioschemas.jsonld | 8 +-- data/microscope/microscopebioschemas.jsonld | 10 ++-- .../microscope_platformbioschemas.jsonld | 4 +- data/microsniper/microsniperbioschemas.jsonld | 4 +- data/microtaxi/microtaxibioschemas.jsonld | 4 +- data/midas/midasbioschemas.jsonld | 4 +- data/mieaa/mieaabioschemas.jsonld | 22 ++++---- data/miframe/miframebioschemas.jsonld | 18 +++---- .../migenas_toolkitbioschemas.jsonld | 4 +- data/migraine/migrainebioschemas.jsonld | 4 +- data/miic/miicbioschemas.jsonld | 4 +- data/mim/mimbioschemas.jsonld | 2 +- data/mimager/mimagerbioschemas.jsonld | 4 +- data/mimeanto/mimeantobioschemas.jsonld | 4 +- data/mimodb/mimodbbioschemas.jsonld | 4 +- data/mimosa/mimosabioschemas.jsonld | 16 +++--- .../minactionpathbioschemas.jsonld | 2 +- data/minas/minasbioschemas.jsonld | 4 +- data/mindel/mindelbioschemas.jsonld | 14 +++--- data/mindthegap/mindthegapbioschemas.jsonld | 4 +- data/mindy/mindybioschemas.jsonld | 4 +- data/mineica/mineicabioschemas.jsonld | 4 +- data/minepath/minepathbioschemas.jsonld | 8 +-- data/minerva/minervabioschemas.jsonld | 22 ++++---- .../minerva_platformbioschemas.jsonld | 30 +++++------ data/minet/minetbioschemas.jsonld | 8 +-- data/minexpert/minexpertbioschemas.jsonld | 8 +-- data/minfi/minfibioschemas.jsonld | 32 ++++++------ data/minia/miniabioschemas.jsonld | 4 +- .../minimumdistancebioschemas.jsonld | 4 +- .../minmotif_minerbioschemas.jsonld | 4 +- data/mint/mintbioschemas.jsonld | 34 ++++++------- data/mintmap/mintmapbioschemas.jsonld | 4 +- data/miolite/miolitebioschemas.jsonld | 2 +- .../mip_scaffolderbioschemas.jsonld | 4 +- data/mipav/mipavbioschemas.jsonld | 4 +- data/mipgen/mipgenbioschemas.jsonld | 4 +- data/mipp/mippbioschemas.jsonld | 2 +- data/mir-at/mir-atbioschemas.jsonld | 2 +- data/mir-prefer/mir-preferbioschemas.jsonld | 2 +- data/mir2gene/mir2genebioschemas.jsonld | 4 +- data/mir2go/mir2gobioschemas.jsonld | 4 +- data/mira/mirabioschemas.jsonld | 4 +- data/mirach/mirachbioschemas.jsonld | 4 +- data/miracle/miraclebioschemas.jsonld | 4 +- data/mirage/miragebioschemas.jsonld | 20 ++++---- data/miranalyzer/miranalyzerbioschemas.jsonld | 4 +- data/mirbase/mirbasebioschemas.jsonld | 4 +- .../mirbaseconverterbioschemas.jsonld | 2 +- data/mircat/mircatbioschemas.jsonld | 4 +- data/mircat2/mircat2bioschemas.jsonld | 4 +- data/mircomb/mircombbioschemas.jsonld | 10 ++-- .../mircomp-shinybioschemas.jsonld | 4 +- data/mircomp/mircompbioschemas.jsonld | 14 +++--- data/mircompare/mircomparebioschemas.jsonld | 8 +-- data/mirdentify/mirdentifybioschemas.jsonld | 16 +++--- data/mirdrn/mirdrnbioschemas.jsonld | 4 +- data/mirgen/mirgenbioschemas.jsonld | 4 +- data/miriam/miriambioschemas.jsonld | 4 +- data/miriam_ws/miriam_wsbioschemas.jsonld | 4 +- data/mirin/mirinbioschemas.jsonld | 4 +- .../mirintegratorbioschemas.jsonld | 8 +-- data/mirlab/mirlabbioschemas.jsonld | 26 +++++----- data/mirlastic/mirlasticbioschemas.jsonld | 4 +- data/mirmaid/mirmaidbioschemas.jsonld | 8 +-- data/mirmat/mirmatbioschemas.jsonld | 8 +-- data/mirmine/mirminebioschemas.jsonld | 2 +- data/mirmmr/mirmmrbioschemas.jsonld | 8 +-- data/mirmod/mirmodbioschemas.jsonld | 8 +-- data/mirna-dis/mirna-disbioschemas.jsonld | 4 +- data/mirnafold/mirnafoldbioschemas.jsonld | 4 +- data/mirnakey/mirnakeybioschemas.jsonld | 4 +- data/mirnalasso/mirnalassobioschemas.jsonld | 4 +- .../mirnameconverterbioschemas.jsonld | 4 +- data/mirnamotif/mirnamotifbioschemas.jsonld | 16 +++--- data/mirnapath/mirnapathbioschemas.jsonld | 20 ++++---- data/mirnatap/mirnatapbioschemas.jsonld | 8 +-- data/mirnatip/mirnatipbioschemas.jsonld | 6 +-- data/mirnest/mirnestbioschemas.jsonld | 4 +- data/mirnet/mirnetbioschemas.jsonld | 20 ++++---- data/mirortho/mirorthobioschemas.jsonld | 4 +- data/mirpipe/mirpipebioschemas.jsonld | 4 +- data/mirplant/mirplantbioschemas.jsonld | 4 +- data/mirplex/mirplexbioschemas.jsonld | 8 +-- data/mirpub/mirpubbioschemas.jsonld | 12 ++--- data/mirpursuit/mirpursuitbioschemas.jsonld | 8 +-- data/mirscan/mirscanbioschemas.jsonld | 4 +- data/mirsponge/mirspongebioschemas.jsonld | 4 +- data/mirsponger/mirspongerbioschemas.jsonld | 4 +- data/mirsynergy/mirsynergybioschemas.jsonld | 6 +-- data/mirsystem/mirsystembioschemas.jsonld | 4 +- data/mirtar2go/mirtar2gobioschemas.jsonld | 20 ++++---- data/mirtarvis/mirtarvisbioschemas.jsonld | 2 +- data/mirtex/mirtexbioschemas.jsonld | 2 +- data/mirtif/mirtifbioschemas.jsonld | 4 +- data/mirtime/mirtimebioschemas.jsonld | 4 +- data/mirtissue/mirtissuebioschemas.jsonld | 20 ++++---- data/mirtools/mirtoolsbioschemas.jsonld | 4 +- data/mirtrace/mirtracebioschemas.jsonld | 4 +- data/mirtrail/mirtrailbioschemas.jsonld | 2 +- data/mirtrios/mirtriosbioschemas.jsonld | 8 +-- .../miru-profilerbioschemas.jsonld | 10 ++-- .../miru-vntrplusbioschemas.jsonld | 4 +- data/miru/mirubioschemas.jsonld | 4 +- data/mirumir/mirumirbioschemas.jsonld | 4 +- .../mirvestigatorbioschemas.jsonld | 2 +- data/mirvial/mirvialbioschemas.jsonld | 4 +- data/misis/misisbioschemas.jsonld | 2 +- data/miso_r/miso_rbioschemas.jsonld | 2 +- data/missequel/missequelbioschemas.jsonld | 4 +- data/missmethyl/missmethylbioschemas.jsonld | 10 ++-- data/missrows/missrowsbioschemas.jsonld | 14 +++--- data/mist/mistbioschemas.jsonld | 8 +-- .../mistic-tumourbioschemas.jsonld | 10 ++-- data/mistic/misticbioschemas.jsonld | 2 +- data/mistimm/mistimmbioschemas.jsonld | 22 ++++---- data/mitea/miteabioschemas.jsonld | 4 +- .../mitk-modelfitbioschemas.jsonld | 6 +-- data/mitobank/mitobankbioschemas.jsonld | 4 +- data/mitobreak/mitobreakbioschemas.jsonld | 8 +-- data/mitofish/mitofishbioschemas.jsonld | 18 +++---- data/mitofy/mitofybioschemas.jsonld | 8 +-- .../mitogenesisdbbioschemas.jsonld | 6 +-- data/mitoimpute/mitoimputebioschemas.jsonld | 4 +- data/mitominer/mitominerbioschemas.jsonld | 2 +- data/mitoode/mitoodebioschemas.jsonld | 24 ++++----- data/mitoprot_ii/mitoprot_iibioschemas.jsonld | 4 +- data/mitotip/mitotipbioschemas.jsonld | 4 +- data/mitotool/mitotoolbioschemas.jsonld | 4 +- data/mitotoolpy/mitotoolpybioschemas.jsonld | 4 +- data/mitoxplorer/mitoxplorerbioschemas.jsonld | 4 +- data/mitrata/mitratabioschemas.jsonld | 2 +- data/mitsu/mitsubioschemas.jsonld | 4 +- data/mix/mixbioschemas.jsonld | 10 ++-- data/mix99/mix99bioschemas.jsonld | 4 +- data/mixchip/mixchipbioschemas.jsonld | 8 +-- data/mixclone/mixclonebioschemas.jsonld | 2 +- data/mixcr/mixcrbioschemas.jsonld | 4 +- data/mixomics/mixomicsbioschemas.jsonld | 4 +- data/mixr/mixrbioschemas.jsonld | 20 ++++---- data/mixscore/mixscorebioschemas.jsonld | 4 +- data/mizbee/mizbeebioschemas.jsonld | 4 +- data/mizutama/mizutamabioschemas.jsonld | 4 +- data/mkesa/mkesabioschemas.jsonld | 8 +-- data/mkt/mktbioschemas.jsonld | 8 +-- data/ml_repo/ml_repobioschemas.jsonld | 28 +++++------ data/mlasso-hum/mlasso-humbioschemas.jsonld | 6 +-- data/mlbias/mlbiasbioschemas.jsonld | 4 +- data/mlc/mlcbioschemas.jsonld | 2 +- data/mlegp/mlegpbioschemas.jsonld | 6 +-- data/mlibrary/mlibrarybioschemas.jsonld | 4 +- .../mlinterfacesbioschemas.jsonld | 2 +- data/mlm/mlmbioschemas.jsonld | 4 +- data/mlml2r/mlml2rbioschemas.jsonld | 2 +- data/mlp/mlpbioschemas.jsonld | 8 +-- data/mlphaser/mlphaserbioschemas.jsonld | 4 +- data/mlseq/mlseqbioschemas.jsonld | 2 +- data/mlst-db/mlst-dbbioschemas.jsonld | 4 +- data/mlst/mlstbioschemas.jsonld | 2 +- data/mlsta/mlstabioschemas.jsonld | 4 +- data/mltree/mltreebioschemas.jsonld | 2 +- data/mltreemap/mltreemapbioschemas.jsonld | 4 +- data/mmappr/mmapprbioschemas.jsonld | 4 +- data/mmb/mmbbioschemas.jsonld | 4 +- data/mmbgx/mmbgxbioschemas.jsonld | 4 +- data/mmbpred/mmbpredbioschemas.jsonld | 4 +- data/mmdb/mmdbbioschemas.jsonld | 2 +- data/mmdiff2/mmdiff2bioschemas.jsonld | 6 +-- data/mmeta/mmetabioschemas.jsonld | 8 +-- data/mmnet/mmnetbioschemas.jsonld | 4 +- data/mmp/mmpbioschemas.jsonld | 4 +- data/mmquant/mmquantbioschemas.jsonld | 4 +- data/mmr/mmrbioschemas.jsonld | 4 +- data/mmsdusty/mmsdustybioschemas.jsonld | 4 +- data/mmseq/mmseqbioschemas.jsonld | 4 +- .../mmssimilaritybioschemas.jsonld | 2 +- .../mmtsb_toolsetbioschemas.jsonld | 2 +- data/mmx-i/mmx-ibioschemas.jsonld | 12 ++--- data/mni/mnibioschemas.jsonld | 4 +- data/moad/moadbioschemas.jsonld | 6 +-- data/moan/moanbioschemas.jsonld | 4 +- data/moat/moatbioschemas.jsonld | 4 +- data/mobcal-mpi/mobcal-mpibioschemas.jsonld | 4 +- data/mobi/mobibioschemas.jsonld | 4 +- data/mobidb/mobidbbioschemas.jsonld | 4 +- .../mobilomefinderbioschemas.jsonld | 8 +-- .../mocapy_plus_plusbioschemas.jsonld | 4 +- data/moccs/moccsbioschemas.jsonld | 4 +- data/mochiview/mochiviewbioschemas.jsonld | 2 +- data/mocsphaser/mocsphaserbioschemas.jsonld | 4 +- data/mod_bio/mod_biobioschemas.jsonld | 4 +- data/mod_tools/mod_toolsbioschemas.jsonld | 2 +- data/moda/modabioschemas.jsonld | 2 +- data/modbase/modbasebioschemas.jsonld | 4 +- data/modcell2/modcell2bioschemas.jsonld | 4 +- data/mode-task/mode-taskbioschemas.jsonld | 4 +- data/model/modelbioschemas.jsonld | 4 +- .../modelestimatorbioschemas.jsonld | 2 +- .../modelexplorerbioschemas.jsonld | 18 +++---- data/modeller/modellerbioschemas.jsonld | 2 +- data/modenrichr/modenrichrbioschemas.jsonld | 20 ++++---- data/modent/modentbioschemas.jsonld | 4 +- data/moderna/modernabioschemas.jsonld | 2 +- data/modest/modestbioschemas.jsonld | 4 +- data/modexplorer/modexplorerbioschemas.jsonld | 4 +- data/modfold/modfoldbioschemas.jsonld | 18 +++---- data/modfold4/modfold4bioschemas.jsonld | 4 +- .../modifygenomiccoordinatesbioschemas.jsonld | 2 +- data/modil/modilbioschemas.jsonld | 4 +- data/modlamp/modlampbioschemas.jsonld | 2 +- data/modlink/modlinkbioschemas.jsonld | 22 ++++---- data/modmap/modmapbioschemas.jsonld | 4 +- data/modmatcher/modmatcherbioschemas.jsonld | 2 +- data/modpepint/modpepintbioschemas.jsonld | 2 +- data/modpred/modpredbioschemas.jsonld | 4 +- .../modsara-variantbioschemas.jsonld | 16 +++--- .../modsubnetbiomidentbioschemas.jsonld | 4 +- .../modulemasterbioschemas.jsonld | 8 +-- .../modulesearchbioschemas.jsonld | 4 +- data/moff/moffbioschemas.jsonld | 4 +- data/mogsa/mogsabioschemas.jsonld | 4 +- data/molaxis/molaxisbioschemas.jsonld | 4 +- data/molden/moldenbioschemas.jsonld | 4 +- data/mole/molebioschemas.jsonld | 4 +- .../mole_pymol_pluginbioschemas.jsonld | 4 +- .../molecular_clockbioschemas.jsonld | 2 +- data/moleonline/moleonlinebioschemas.jsonld | 18 +++---- .../molgenis-imputebioschemas.jsonld | 10 ++-- data/molligen/molligenbioschemas.jsonld | 8 +-- data/molmedb/molmedbbioschemas.jsonld | 10 ++-- data/molmeth/molmethbioschemas.jsonld | 2 +- data/molmovdb/molmovdbbioschemas.jsonld | 4 +- data/molprobity/molprobitybioschemas.jsonld | 2 +- data/molrep/molrepbioschemas.jsonld | 4 +- data/molsurfer/molsurferbioschemas.jsonld | 4 +- data/mom/mombioschemas.jsonld | 2 +- data/moma/momabioschemas.jsonld | 8 +-- data/monet/monetbioschemas.jsonld | 4 +- data/monetfamily/monetfamilybioschemas.jsonld | 4 +- data/mongkie/mongkiebioschemas.jsonld | 16 +++--- ..._inference_from_chromatinbioschemas.jsonld | 24 ++++----- ...ence_from_chromatin_magicbioschemas.jsonld | 18 +++---- data/monoclad/monocladbioschemas.jsonld | 2 +- data/monocle/monoclebioschemas.jsonld | 20 ++++---- .../monosaccharidedbbioschemas.jsonld | 2 +- data/monster/monsterbioschemas.jsonld | 4 +- data/moonlightr/moonlightrbioschemas.jsonld | 8 +-- data/mops/mopsbioschemas.jsonld | 4 +- data/morca/morcabioschemas.jsonld | 4 +- data/mordred/mordredbioschemas.jsonld | 14 +++--- data/morfeus/morfeusbioschemas.jsonld | 16 +++--- data/morph/morphbioschemas.jsonld | 12 ++--- data/morphin/morphinbioschemas.jsonld | 4 +- .../morphocatcherbioschemas.jsonld | 16 +++--- data/morpholibj/morpholibjbioschemas.jsonld | 4 +- data/mosaic/mosaicbioschemas.jsonld | 2 +- .../mosaic_vaccine_designerbioschemas.jsonld | 4 +- data/mosaics/mosaicsbioschemas.jsonld | 8 +-- data/mosaik/mosaikbioschemas.jsonld | 10 ++-- data/mosclip/mosclipbioschemas.jsonld | 4 +- data/mosdi/mosdibioschemas.jsonld | 4 +- data/mosflm/mosflmbioschemas.jsonld | 8 +-- data/motan/motanbioschemas.jsonld | 4 +- data/motif-x/motif-xbioschemas.jsonld | 2 +- data/motifbreakr/motifbreakrbioschemas.jsonld | 10 ++-- .../motifcounterbioschemas.jsonld | 4 +- data/motifcut/motifcutbioschemas.jsonld | 4 +- data/motifdb/motifdbbioschemas.jsonld | 4 +- data/motiflab/motiflabbioschemas.jsonld | 4 +- data/motifmatchr/motifmatchrbioschemas.jsonld | 4 +- .../motifregressorbioschemas.jsonld | 4 +- .../motifsamplerbioschemas.jsonld | 4 +- data/motifscan/motifscanbioschemas.jsonld | 4 +- data/motifsim/motifsimbioschemas.jsonld | 10 ++-- data/motifstack/motifstackbioschemas.jsonld | 8 +-- data/motifsuite/motifsuitebioschemas.jsonld | 4 +- data/motifviz/motifvizbioschemas.jsonld | 4 +- data/motiv/motivbioschemas.jsonld | 8 +-- .../motivevalidatorbioschemas.jsonld | 8 +-- data/motus/motusbioschemas.jsonld | 8 +-- data/mouse_atlas/mouse_atlasbioschemas.jsonld | 4 +- data/mousebook/mousebookbioschemas.jsonld | 4 +- .../mousedivgenobioschemas.jsonld | 4 +- data/mousemine/mouseminebioschemas.jsonld | 10 ++-- data/moviemaker/moviemakerbioschemas.jsonld | 4 +- data/mowserv/mowservbioschemas.jsonld | 18 +++---- data/mpa/mpabioschemas.jsonld | 4 +- data/mpblast/mpblastbioschemas.jsonld | 4 +- data/mpd-primer/mpd-primerbioschemas.jsonld | 14 +++--- data/mpd/mpdbioschemas.jsonld | 4 +- data/mpex/mpexbioschemas.jsonld | 4 +- data/mpfe/mpfebioschemas.jsonld | 2 +- data/mpi_toolkit/mpi_toolkitbioschemas.jsonld | 4 +- data/mpileup/mpileupbioschemas.jsonld | 4 +- data/mpileup_vcf/mpileup_vcfbioschemas.jsonld | 4 +- data/mpiutils/mpiutilsbioschemas.jsonld | 4 +- data/mpp/mppbioschemas.jsonld | 4 +- data/mpra/mprabioschemas.jsonld | 2 +- .../mpra_design_toolsbioschemas.jsonld | 8 +-- data/mpranator/mpranatorbioschemas.jsonld | 12 ++--- data/mpromdb/mpromdbbioschemas.jsonld | 4 +- data/mpscan/mpscanbioschemas.jsonld | 4 +- data/mptheory/mptheorybioschemas.jsonld | 2 +- .../mptopoquerierbioschemas.jsonld | 2 +- data/mptp/mptpbioschemas.jsonld | 6 +-- data/mqc/mqcbioschemas.jsonld | 20 ++++---- data/mqscore/mqscorebioschemas.jsonld | 4 +- data/mr-mega/mr-megabioschemas.jsonld | 6 +-- data/mr-microt/mr-microtbioschemas.jsonld | 4 +- data/mrbayes/mrbayesbioschemas.jsonld | 16 +++--- data/mrbump/mrbumpbioschemas.jsonld | 4 +- data/mrbws/mrbwsbioschemas.jsonld | 4 +- ..._image_processing_packagebioschemas.jsonld | 4 +- data/mrcfile/mrcfilebioschemas.jsonld | 2 +- data/mredictor/mredictorbioschemas.jsonld | 4 +- data/mreps/mrepsbioschemas.jsonld | 2 +- data/mres2x/mres2xbioschemas.jsonld | 4 +- data/mrhmms/mrhmmsbioschemas.jsonld | 4 +- data/mricloud/mricloudbioschemas.jsonld | 12 ++--- data/mrmre/mrmrebioschemas.jsonld | 4 +- .../mrna_optimiserbioschemas.jsonld | 4 +- data/mrprimerw/mrprimerwbioschemas.jsonld | 4 +- data/mrprimerw2/mrprimerw2bioschemas.jsonld | 8 +-- data/mrs/mrsbioschemas.jsonld | 4 +- data/mrsfast/mrsfastbioschemas.jsonld | 10 ++-- data/mruninovo/mruninovobioschemas.jsonld | 8 +-- data/ms-blast/ms-blastbioschemas.jsonld | 4 +- data/ms-deconv/ms-deconvbioschemas.jsonld | 4 +- data/ms-digest/ms-digestbioschemas.jsonld | 8 +-- data/ms-fit/ms-fitbioschemas.jsonld | 8 +-- data/ms-gfdb/ms-gfdbbioschemas.jsonld | 4 +- data/ms-helios/ms-heliosbioschemas.jsonld | 22 ++++---- data/ms-isotope/ms-isotopebioschemas.jsonld | 4 +- data/ms-lims/ms-limsbioschemas.jsonld | 2 +- .../ms2pip_serverbioschemas.jsonld | 4 +- data/ms_align/ms_alignbioschemas.jsonld | 4 +- data/msa/msabioschemas.jsonld | 12 ++--- .../msacquisitionsimulatorbioschemas.jsonld | 4 +- data/msaprobs/msaprobsbioschemas.jsonld | 4 +- data/msaviewer/msaviewerbioschemas.jsonld | 12 ++--- data/msbar/msbarbioschemas.jsonld | 16 +++--- data/msbe/msbebioschemas.jsonld | 4 +- data/mscentipede/mscentipedebioschemas.jsonld | 4 +- data/mscltoolbox/mscltoolboxbioschemas.jsonld | 4 +- data/msclust/msclustbioschemas.jsonld | 4 +- data/msconvert/msconvertbioschemas.jsonld | 18 +++---- .../msd_file_readerbioschemas.jsonld | 4 +- data/msea/mseabioschemas.jsonld | 4 +- ...ilereader_python_bindingsbioschemas.jsonld | 4 +- data/msgbsr/msgbsrbioschemas.jsonld | 2 +- .../msgfdb2pepxmlbioschemas.jsonld | 4 +- data/msgfgui/msgfguibioschemas.jsonld | 6 +-- data/msgfplus/msgfplusbioschemas.jsonld | 6 +-- data/msgl/msglbioschemas.jsonld | 2 +- data/mshot/mshotbioschemas.jsonld | 4 +- data/msimageview/msimageviewbioschemas.jsonld | 4 +- data/msireader/msireaderbioschemas.jsonld | 4 +- data/msisensor/msisensorbioschemas.jsonld | 4 +- data/msmbuilder/msmbuilderbioschemas.jsonld | 14 +++--- data/msms/msmsbioschemas.jsonld | 4 +- data/msmseda/msmsedabioschemas.jsonld | 8 +-- data/msmstests/msmstestsbioschemas.jsonld | 4 +- data/msnbase/msnbasebioschemas.jsonld | 10 ++-- data/msnid/msnidbioschemas.jsonld | 4 +- .../msp-htprimerbioschemas.jsonld | 8 +-- .../mspc-morpheusbioschemas.jsonld | 4 +- data/mspc/mspcbioschemas.jsonld | 4 +- data/mspire/mspirebioschemas.jsonld | 4 +- data/msplit/msplitbioschemas.jsonld | 4 +- data/msprogene/msprogenebioschemas.jsonld | 4 +- data/msqrob/msqrobbioschemas.jsonld | 12 ++--- data/msqt/msqtbioschemas.jsonld | 4 +- data/msstats/msstatsbioschemas.jsonld | 4 +- data/msstatsqc/msstatsqcbioschemas.jsonld | 2 +- .../msstatsqcguibioschemas.jsonld | 2 +- data/msv3d/msv3dbioschemas.jsonld | 4 +- data/msviz/msvizbioschemas.jsonld | 8 +-- data/mtctscan/mtctscanbioschemas.jsonld | 6 +-- .../mtdna-serverbioschemas.jsonld | 6 +-- data/mtg2/mtg2bioschemas.jsonld | 4 +- .../mtmdat-haddockbioschemas.jsonld | 4 +- data/mtoolbox/mtoolboxbioschemas.jsonld | 4 +- data/mtprotevol/mtprotevolbioschemas.jsonld | 24 ++++----- data/mu2a/mu2abioschemas.jsonld | 2 +- data/mucor/mucorbioschemas.jsonld | 4 +- data/mud/mudbioschemas.jsonld | 4 +- data/mude/mudebioschemas.jsonld | 2 +- data/mulan/mulanbioschemas.jsonld | 4 +- data/mulcom/mulcombioschemas.jsonld | 4 +- data/mulpba/mulpbabioschemas.jsonld | 4 +- data/mulrf/mulrfbioschemas.jsonld | 2 +- data/multeesum/multeesumbioschemas.jsonld | 4 +- data/multi-car/multi-carbioschemas.jsonld | 8 +-- data/multi-dice/multi-dicebioschemas.jsonld | 8 +-- ...multi-fingerprint_browserbioschemas.jsonld | 4 +- .../multi-harmonybioschemas.jsonld | 4 +- .../multi_experiment_matrixbioschemas.jsonld | 4 +- .../multiassayexperimentbioschemas.jsonld | 8 +-- data/multibind/multibindbioschemas.jsonld | 4 +- .../multibreak-svbioschemas.jsonld | 4 +- data/multiclust/multiclustbioschemas.jsonld | 4 +- data/multicoil/multicoilbioschemas.jsonld | 4 +- .../multidatasetbioschemas.jsonld | 24 ++++----- data/multidcox/multidcoxbioschemas.jsonld | 4 +- data/multidisp/multidispbioschemas.jsonld | 4 +- .../multifastamixbioschemas.jsonld | 4 +- data/multifit/multifitbioschemas.jsonld | 4 +- data/multiglycan/multiglycanbioschemas.jsonld | 4 +- data/multimap/multimapbioschemas.jsonld | 4 +- data/multimed/multimedbioschemas.jsonld | 4 +- data/multimeta/multimetabioschemas.jsonld | 4 +- .../multiomicsvizbioschemas.jsonld | 4 +- data/multiphate/multiphatebioschemas.jsonld | 8 +-- data/multiphen/multiphenbioschemas.jsonld | 4 +- data/multiplx/multiplxbioschemas.jsonld | 4 +- data/multipow/multipowbioschemas.jsonld | 4 +- data/multipred2/multipred2bioschemas.jsonld | 4 +- data/multiprot/multiprotbioschemas.jsonld | 8 +-- data/multipsq/multipsqbioschemas.jsonld | 4 +- data/multiqc/multiqcbioschemas.jsonld | 4 +- .../multirnafoldbioschemas.jsonld | 4 +- data/multiscan/multiscanbioschemas.jsonld | 8 +-- data/multiview/multiviewbioschemas.jsonld | 4 +- data/multiwaver/multiwaverbioschemas.jsonld | 4 +- data/multixcan/multixcanbioschemas.jsonld | 4 +- data/multovl/multovlbioschemas.jsonld | 4 +- data/multtest/multtestbioschemas.jsonld | 8 +-- .../mumrescuelitebioschemas.jsonld | 4 +- data/mupet/mupetbioschemas.jsonld | 12 ++--- data/mupred/mupredbioschemas.jsonld | 4 +- data/mupro/muprobioschemas.jsonld | 6 +-- data/muscle/musclebioschemas.jsonld | 4 +- data/muscle_ebi/muscle_ebibioschemas.jsonld | 4 +- .../muscle_gene_setsbioschemas.jsonld | 28 +++++------ .../muscle_ws_jabawsbioschemas.jsonld | 2 +- data/musi-bind/musi-bindbioschemas.jsonld | 6 +-- data/musi/musibioschemas.jsonld | 4 +- data/music2/music2bioschemas.jsonld | 8 +-- data/musica/musicabioschemas.jsonld | 4 +- data/musica_2/musica_2bioschemas.jsonld | 6 +-- data/must/mustbioschemas.jsonld | 4 +- data/mustguseal/mustgusealbioschemas.jsonld | 2 +- data/mutaid/mutaidbioschemas.jsonld | 10 ++-- data/mutalisk/mutaliskbioschemas.jsonld | 8 +-- data/mutanalyst/mutanalystbioschemas.jsonld | 4 +- data/mutanet/mutanetbioschemas.jsonld | 4 +- data/mutation3d/mutation3dbioschemas.jsonld | 16 +++--- .../mutation_tasterbioschemas.jsonld | 4 +- .../mutationalignerbioschemas.jsonld | 18 +++---- .../mutationalpatternsbioschemas.jsonld | 8 +-- .../mutationdistillerbioschemas.jsonld | 4 +- .../mutationinfobioschemas.jsonld | 8 +-- .../mutationmotifbioschemas.jsonld | 4 +- .../mutations-meta-analyserbioschemas.jsonld | 4 +- .../mutationtasterbioschemas.jsonld | 4 +- data/mutdb/mutdbbioschemas.jsonld | 2 +- data/mutect/mutectbioschemas.jsonld | 2 +- data/mutexsl/mutexslbioschemas.jsonld | 18 +++---- .../mutlbsgenedbbioschemas.jsonld | 4 +- data/mutplot/mutplotbioschemas.jsonld | 18 +++---- data/mutpred/mutpredbioschemas.jsonld | 4 +- .../muts-needle-plotbioschemas.jsonld | 4 +- .../mvbiodatasimbioschemas.jsonld | 22 ++++---- data/mvcclass/mvcclassbioschemas.jsonld | 6 +-- data/mvda/mvdabioschemas.jsonld | 4 +- data/mvgst/mvgstbioschemas.jsonld | 8 +-- .../mview_api_ebibioschemas.jsonld | 4 +- data/mview_ebi/mview_ebibioschemas.jsonld | 4 +- data/mvqtlcim/mvqtlcimbioschemas.jsonld | 2 +- data/mwastools/mwastoolsbioschemas.jsonld | 4 +- data/mwcontam/mwcontambioschemas.jsonld | 18 +++---- data/mwfilter/mwfilterbioschemas.jsonld | 14 +++--- data/mwt/mwtbioschemas.jsonld | 4 +- data/mxm/mxmbioschemas.jsonld | 4 +- .../my_forensic_loci_queriesbioschemas.jsonld | 4 +- data/mybs/mybsbioschemas.jsonld | 4 +- data/mycomemsvm/mycomemsvmbioschemas.jsonld | 4 +- data/mydgr/mydgrbioschemas.jsonld | 12 ++--- data/myelinj/myelinjbioschemas.jsonld | 4 +- .../myexperimentbioschemas.jsonld | 4 +- .../mygenomebrowserbioschemas.jsonld | 8 +-- data/myminer/myminerbioschemas.jsonld | 4 +- data/myphylodb/myphylodbbioschemas.jsonld | 4 +- .../myproteinnetbioschemas.jsonld | 10 ++-- data/myrialign/myrialignbioschemas.jsonld | 4 +- data/myvariant/myvariantbioschemas.jsonld | 4 +- data/myvcf/myvcfbioschemas.jsonld | 4 +- data/mz2mgf/mz2mgfbioschemas.jsonld | 4 +- data/mzid/mzidbioschemas.jsonld | 2 +- data/mzjava/mzjavabioschemas.jsonld | 4 +- data/mzmatch/mzmatchbioschemas.jsonld | 2 +- data/mzmine/mzminebioschemas.jsonld | 4 +- data/mzr/mzrbioschemas.jsonld | 22 ++++---- data/mzvar/mzvarbioschemas.jsonld | 12 ++--- .../mzxml_viewerbioschemas.jsonld | 4 +- data/mzxmlplot/mzxmlplotbioschemas.jsonld | 4 +- data/n-glyco/n-glycobioschemas.jsonld | 4 +- data/n-score/n-scorebioschemas.jsonld | 4 +- data/n1pas/n1pasbioschemas.jsonld | 28 +++++------ data/nadbinder/nadbinderbioschemas.jsonld | 2 +- data/nadfinder/nadfinderbioschemas.jsonld | 8 +-- data/nail/nailbioschemas.jsonld | 4 +- data/nam/nambioschemas.jsonld | 4 +- .../nannochloropsisbioschemas.jsonld | 4 +- data/nanodj/nanodjbioschemas.jsonld | 18 +++---- data/nanomod/nanomodbioschemas.jsonld | 18 +++---- data/nanook/nanookbioschemas.jsonld | 20 ++++---- data/nanopack/nanopackbioschemas.jsonld | 4 +- data/nanopipe/nanopipebioschemas.jsonld | 4 +- data/nanor/nanorbioschemas.jsonld | 4 +- .../nanostringdiffbioschemas.jsonld | 2 +- .../nanostringnormcnvbioschemas.jsonld | 4 +- data/nanotiler/nanotilerbioschemas.jsonld | 2 +- data/nap/napbioschemas.jsonld | 4 +- data/napp/nappbioschemas.jsonld | 4 +- data/narrowpeaks/narrowpeaksbioschemas.jsonld | 14 +++--- data/nasca/nascabioschemas.jsonld | 4 +- data/nassam/nassambioschemas.jsonld | 4 +- data/nastiseq/nastiseqbioschemas.jsonld | 4 +- data/nastybugs/nastybugsbioschemas.jsonld | 4 +- data/natalieq/natalieqbioschemas.jsonld | 8 +-- data/navicluster/naviclusterbioschemas.jsonld | 4 +- data/navigator/navigatorbioschemas.jsonld | 2 +- data/navikey/navikeybioschemas.jsonld | 6 +-- data/navise/navisebioschemas.jsonld | 14 +++--- .../nbdc_rdf_portalbioschemas.jsonld | 8 +-- .../nbrp_resourcesbioschemas.jsonld | 4 +- data/nbspred/nbspredbioschemas.jsonld | 4 +- .../ncats_bioplanetbioschemas.jsonld | 2 +- .../ncbi_assembly_archivebioschemas.jsonld | 2 +- .../ncbi_bookshelfbioschemas.jsonld | 4 +- .../ncbi_dbprobebioschemas.jsonld | 4 +- .../ncbi_epigenomicsbioschemas.jsonld | 4 +- data/ncbi_gene/ncbi_genebioschemas.jsonld | 4 +- .../ncbi_genome_workbenchbioschemas.jsonld | 4 +- .../ncbi_genotypingbioschemas.jsonld | 2 +- data/ncbi_geo/ncbi_geobioschemas.jsonld | 4 +- .../ncbi_mass_downloaderbioschemas.jsonld | 8 +-- .../ncbi_resourcesbioschemas.jsonld | 4 +- data/ncigraph/ncigraphbioschemas.jsonld | 4 +- data/ncis/ncisbioschemas.jsonld | 4 +- data/ncoils/ncoilsbioschemas.jsonld | 4 +- data/ncpred/ncpredbioschemas.jsonld | 4 +- data/ncrna/ncrnabioschemas.jsonld | 2 +- data/ncrnawsdl/ncrnawsdlbioschemas.jsonld | 4 +- data/ndexr/ndexrbioschemas.jsonld | 6 +-- data/ndtree/ndtreebioschemas.jsonld | 18 +++---- data/nearender/nearenderbioschemas.jsonld | 6 +-- data/neartree/neartreebioschemas.jsonld | 20 ++++---- data/neat-enrich/neat-enrichbioschemas.jsonld | 16 +++--- data/neat-ngs/neat-ngsbioschemas.jsonld | 6 +-- data/neat/neatbioschemas.jsonld | 8 +-- data/nebcutter/nebcutterbioschemas.jsonld | 4 +- data/nebula/nebulabioschemas.jsonld | 4 +- data/necklace/necklacebioschemas.jsonld | 4 +- .../needle-api-ebibioschemas.jsonld | 2 +- data/needle/needlebioschemas.jsonld | 18 +++---- data/needleall/needleallbioschemas.jsonld | 14 +++--- data/needles/needlesbioschemas.jsonld | 4 +- data/needlestack/needlestackbioschemas.jsonld | 6 +-- data/neemp/neempbioschemas.jsonld | 26 +++++----- data/negatome/negatomebioschemas.jsonld | 2 +- data/nem/nembioschemas.jsonld | 4 +- data/nembase4/nembase4bioschemas.jsonld | 4 +- data/nemine/neminebioschemas.jsonld | 4 +- data/neobio/neobiobioschemas.jsonld | 4 +- .../neopeptide_analyserbioschemas.jsonld | 16 +++--- data/nep/nepbioschemas.jsonld | 10 ++-- data/nephele/nephelebioschemas.jsonld | 2 +- data/neptune/neptunebioschemas.jsonld | 4 +- data/nessm/nessmbioschemas.jsonld | 12 ++--- data/nest-gene/nest-genebioschemas.jsonld | 2 +- data/net-ge/net-gebioschemas.jsonld | 40 +++++++-------- data/net-rstq/net-rstqbioschemas.jsonld | 4 +- data/net_bio/net_biobioschemas.jsonld | 4 +- data/netaspgene/netaspgenebioschemas.jsonld | 4 +- .../netautoprobitbioschemas.jsonld | 4 +- .../netbenchmarkbioschemas.jsonld | 18 +++---- data/netbiov/netbiovbioschemas.jsonld | 8 +-- data/netbox/netboxbioschemas.jsonld | 4 +- data/netcglyc/netcglycbioschemas.jsonld | 8 +-- data/netchop/netchopbioschemas.jsonld | 10 ++-- data/netcomm/netcommbioschemas.jsonld | 4 +- .../netcooperatebioschemas.jsonld | 26 +++++----- data/netcorona/netcoronabioschemas.jsonld | 4 +- data/netcssp/netcsspbioschemas.jsonld | 2 +- data/netctl/netctlbioschemas.jsonld | 20 ++++---- data/netctlpan/netctlpanbioschemas.jsonld | 10 ++-- data/netdecoder/netdecoderbioschemas.jsonld | 8 +-- .../netdiseasesnpbioschemas.jsonld | 12 ++--- data/netgene2/netgene2bioschemas.jsonld | 8 +-- data/netgo/netgobioschemas.jsonld | 14 +++--- data/nethet/nethetbioschemas.jsonld | 4 +- data/netlang/netlangbioschemas.jsonld | 10 ++-- .../netmatchstarbioschemas.jsonld | 20 ++++---- data/netmhc/netmhcbioschemas.jsonld | 18 +++---- data/netmhccons/netmhcconsbioschemas.jsonld | 4 +- data/netmhcii/netmhciibioschemas.jsonld | 20 ++++---- data/netmhciipan/netmhciipanbioschemas.jsonld | 8 +-- data/netmhcpan/netmhcpanbioschemas.jsonld | 20 ++++---- data/netmhcstab/netmhcstabbioschemas.jsonld | 12 ++--- data/netnes/netnesbioschemas.jsonld | 6 +-- data/netoglyc/netoglycbioschemas.jsonld | 18 +++---- .../netpathminerbioschemas.jsonld | 16 +++--- data/netphorest/netphorestbioschemas.jsonld | 10 ++-- data/netphos/netphosbioschemas.jsonld | 4 +- data/netphosbac/netphosbacbioschemas.jsonld | 12 ++--- data/netphosk/netphoskbioschemas.jsonld | 12 ++--- .../netphosyeastbioschemas.jsonld | 10 ++-- .../netplantgenebioschemas.jsonld | 14 +++--- .../netpredictorbioschemas.jsonld | 4 +- data/netprior/netpriorbioschemas.jsonld | 2 +- data/netreg/netregbioschemas.jsonld | 12 ++--- data/netresponse/netresponsebioschemas.jsonld | 4 +- data/netsam/netsambioschemas.jsonld | 8 +-- data/netsim/netsimbioschemas.jsonld | 8 +-- data/netsmooth/netsmoothbioschemas.jsonld | 2 +- data/netstart/netstartbioschemas.jsonld | 16 +++--- data/netsurfp/netsurfpbioschemas.jsonld | 4 +- data/netter/netterbioschemas.jsonld | 4 +- data/nettest/nettestbioschemas.jsonld | 2 +- data/netutr/netutrbioschemas.jsonld | 2 +- data/netvenn/netvennbioschemas.jsonld | 4 +- data/netview/netviewbioschemas.jsonld | 4 +- .../network2canvasbioschemas.jsonld | 2 +- .../network_archaeologybioschemas.jsonld | 4 +- ..._motif_clustering_toolboxbioschemas.jsonld | 4 +- .../network_of_cancer_genesbioschemas.jsonld | 4 +- .../networkanalysbioschemas.jsonld | 4 +- .../networkanalystbioschemas.jsonld | 4 +- data/networkbma/networkbmabioschemas.jsonld | 4 +- data/networkin/networkinbioschemas.jsonld | 20 ++++---- .../networkrandomizerbioschemas.jsonld | 4 +- .../neuroelectrobioschemas.jsonld | 4 +- data/neuromatic/neuromaticbioschemas.jsonld | 10 ++-- data/neuron/neuronbioschemas.jsonld | 4 +- .../neuronactivitytoolbioschemas.jsonld | 6 +-- .../neuroncyto_iibioschemas.jsonld | 8 +-- data/neuropg/neuropgbioschemas.jsonld | 4 +- data/neuropid/neuropidbioschemas.jsonld | 8 +-- data/neuropp/neuroppbioschemas.jsonld | 4 +- data/neuroserver/neuroserverbioschemas.jsonld | 4 +- .../newcpgreport-ebibioschemas.jsonld | 8 +-- .../newcpgreportbioschemas.jsonld | 12 ++--- data/newcpgseek/newcpgseekbioschemas.jsonld | 8 +-- data/newseq/newseqbioschemas.jsonld | 16 +++--- .../nexgenex-tombioschemas.jsonld | 4 +- data/nextbio/nextbiobioschemas.jsonld | 12 ++--- data/nextgene/nextgenebioschemas.jsonld | 4 +- .../nextprot-clibioschemas.jsonld | 2 +- data/nextprot/nextprotbioschemas.jsonld | 10 ++-- data/nextsv/nextsvbioschemas.jsonld | 4 +- data/nffinder/nffinderbioschemas.jsonld | 8 +-- data/nfp/nfpbioschemas.jsonld | 14 +++--- data/ng-tas/ng-tasbioschemas.jsonld | 8 +-- data/ngl_viewer/ngl_viewerbioschemas.jsonld | 8 +-- data/ngless/nglessbioschemas.jsonld | 4 +- data/ngloc/nglocbioschemas.jsonld | 12 ++--- data/ngmlr/ngmlrbioschemas.jsonld | 4 +- .../ngs-qc_generatorbioschemas.jsonld | 4 +- data/ngs-snp/ngs-snpbioschemas.jsonld | 14 +++--- data/ngs-trex/ngs-trexbioschemas.jsonld | 16 +++--- .../ngs_simulationbioschemas.jsonld | 4 +- data/ngscat/ngscatbioschemas.jsonld | 4 +- .../ngscheckmatebioschemas.jsonld | 6 +-- data/ngscopy/ngscopybioschemas.jsonld | 4 +- data/ngsea/ngseabioschemas.jsonld | 2 +- data/ngsep/ngsepbioschemas.jsonld | 8 +-- data/ngsmethdb/ngsmethdbbioschemas.jsonld | 2 +- data/ngsoptwin/ngsoptwinbioschemas.jsonld | 4 +- data/ngsrelatev2/ngsrelatev2bioschemas.jsonld | 36 ++++++------- data/ngsutils/ngsutilsbioschemas.jsonld | 8 +-- data/ngsview/ngsviewbioschemas.jsonld | 4 +- data/nhlapred/nhlapredbioschemas.jsonld | 4 +- data/nhphyml/nhphymlbioschemas.jsonld | 4 +- data/niacs/niacsbioschemas.jsonld | 4 +- data/nias-server/nias-serverbioschemas.jsonld | 4 +- .../nibr_2d-pagebioschemas.jsonld | 2 +- data/nieluter/nieluterbioschemas.jsonld | 4 +- data/niftyfit/niftyfitbioschemas.jsonld | 24 ++++----- data/niftypet/niftypetbioschemas.jsonld | 10 ++-- data/nimefi/nimefibioschemas.jsonld | 4 +- data/nipah/nipahbioschemas.jsonld | 2 +- data/nipredict/nipredictbioschemas.jsonld | 4 +- data/nipter/nipterbioschemas.jsonld | 10 ++-- data/nir/nirbioschemas.jsonld | 4 +- data/nitpicker/nitpickerbioschemas.jsonld | 12 ++--- data/njplot/njplotbioschemas.jsonld | 4 +- data/nlr-parser/nlr-parserbioschemas.jsonld | 4 +- data/nlstradamus/nlstradamusbioschemas.jsonld | 4 +- .../nmd_classifierbioschemas.jsonld | 4 +- data/nmpdr/nmpdrbioschemas.jsonld | 4 +- data/nmrbox/nmrboxbioschemas.jsonld | 4 +- .../nmrfam-sparkybioschemas.jsonld | 12 ++--- data/nmrnet/nmrnetbioschemas.jsonld | 4 +- data/nmrprocflow/nmrprocflowbioschemas.jsonld | 8 +-- data/nmrstarlib/nmrstarlibbioschemas.jsonld | 10 ++-- data/nmsim/nmsimbioschemas.jsonld | 4 +- data/nnalign/nnalignbioschemas.jsonld | 4 +- data/nndb/nndbbioschemas.jsonld | 4 +- data/nnnorm/nnnormbioschemas.jsonld | 8 +-- data/noa/noabioschemas.jsonld | 4 +- data/nobai/nobaibioschemas.jsonld | 4 +- data/nod/nodbioschemas.jsonld | 2 +- data/nohtml/nohtmlbioschemas.jsonld | 12 ++--- data/noiseq/noiseqbioschemas.jsonld | 6 +-- data/noisy/noisybioschemas.jsonld | 4 +- data/nomad-ref/nomad-refbioschemas.jsonld | 4 +- data/non-b_db/non-b_dbbioschemas.jsonld | 4 +- data/noncode/noncodebioschemas.jsonld | 4 +- data/noncoder/noncoderbioschemas.jsonld | 6 +-- data/nondetects/nondetectsbioschemas.jsonld | 16 +++--- data/noreturn/noreturnbioschemas.jsonld | 10 ++-- data/noreva/norevabioschemas.jsonld | 8 +-- .../normalize450kbioschemas.jsonld | 26 +++++----- data/normalyzer/normalyzerbioschemas.jsonld | 4 +- .../normalyzerdebioschemas.jsonld | 4 +- .../normexpressionbioschemas.jsonld | 12 ++--- data/normqpcr/normqpcrbioschemas.jsonld | 12 ++--- data/normr/normrbioschemas.jsonld | 4 +- data/norsnet/norsnetbioschemas.jsonld | 8 +-- data/nospace/nospacebioschemas.jsonld | 12 ++--- data/notab/notabbioschemas.jsonld | 10 ++-- data/notseq/notseqbioschemas.jsonld | 12 ++--- data/notung/notungbioschemas.jsonld | 4 +- data/novoalign/novoalignbioschemas.jsonld | 28 +++++------ data/novoaligncs/novoaligncsbioschemas.jsonld | 4 +- data/novor/novorbioschemas.jsonld | 4 +- data/npact/npactbioschemas.jsonld | 2 +- data/nparact/nparactbioschemas.jsonld | 8 +-- data/npcare/npcarebioschemas.jsonld | 4 +- data/npd_ws/npd_wsbioschemas.jsonld | 4 +- data/npdock/npdockbioschemas.jsonld | 4 +- data/npgsea/npgseabioschemas.jsonld | 8 +-- data/nplb/nplbbioschemas.jsonld | 4 +- data/nppred/nppredbioschemas.jsonld | 14 +++--- data/nps-protein/nps-proteinbioschemas.jsonld | 8 +-- data/nps/npsbioschemas.jsonld | 2 +- data/npseq/npseqbioschemas.jsonld | 4 +- data/nq-flipper/nq-flipperbioschemas.jsonld | 4 +- data/nrg-cing/nrg-cingbioschemas.jsonld | 4 +- data/nrpred/nrpredbioschemas.jsonld | 2 +- data/nrprof/nrprofbioschemas.jsonld | 4 +- data/nrps-pks/nrps-pksbioschemas.jsonld | 4 +- .../nrpspredictor2bioschemas.jsonld | 4 +- data/nrwrh/nrwrhbioschemas.jsonld | 4 +- data/nsdna/nsdnabioschemas.jsonld | 16 +++--- data/nsimscan/nsimscanbioschemas.jsonld | 4 +- data/nsite/nsitebioschemas.jsonld | 4 +- data/nsmap/nsmapbioschemas.jsonld | 4 +- data/nsrrr/nsrrrbioschemas.jsonld | 4 +- .../nssnpanalyzerbioschemas.jsonld | 2 +- data/ntcard/ntcardbioschemas.jsonld | 4 +- data/ntedit/nteditbioschemas.jsonld | 4 +- data/nthseq/nthseqbioschemas.jsonld | 8 +-- data/nthseqset/nthseqsetbioschemas.jsonld | 12 ++--- data/ntue/ntuebioschemas.jsonld | 4 +- data/ntw/ntwbioschemas.jsonld | 4 +- data/nucgen/nucgenbioschemas.jsonld | 4 +- data/nucleardb/nucleardbbioschemas.jsonld | 4 +- .../nucleofinderbioschemas.jsonld | 4 +- data/nucleos/nucleosbioschemas.jsonld | 4 +- data/nucleosim/nucleosimbioschemas.jsonld | 4 +- data/nucler/nuclerbioschemas.jsonld | 8 +-- data/nucleusj/nucleusjbioschemas.jsonld | 4 +- data/nucloc/nuclocbioschemas.jsonld | 4 +- data/nucpred/nucpredbioschemas.jsonld | 2 +- data/nucwave/nucwavebioschemas.jsonld | 4 +- data/nudge/nudgebioschemas.jsonld | 8 +-- data/nullarbor/nullarborbioschemas.jsonld | 6 +-- data/nuparm-plus/nuparm-plusbioschemas.jsonld | 4 +- data/nupop/nupopbioschemas.jsonld | 8 +-- data/nust/nustbioschemas.jsonld | 4 +- data/nvt/nvtbioschemas.jsonld | 4 +- data/nwdisplay/nwdisplaybioschemas.jsonld | 16 +++--- data/nxsensor/nxsensorbioschemas.jsonld | 4 +- data/o-miner/o-minerbioschemas.jsonld | 4 +- data/oases/oasesbioschemas.jsonld | 8 +-- data/oasis/oasisbioschemas.jsonld | 4 +- data/oat/oatbioschemas.jsonld | 4 +- data/obcol/obcolbioschemas.jsonld | 4 +- data/obitools/obitoolsbioschemas.jsonld | 4 +- data/occugene/occugenebioschemas.jsonld | 4 +- data/occupeak/occupeakbioschemas.jsonld | 10 ++-- data/ocg/ocgbioschemas.jsonld | 4 +- data/ochem/ochembioschemas.jsonld | 4 +- data/ocma/ocmabioschemas.jsonld | 10 ++-- data/ocplus/ocplusbioschemas.jsonld | 2 +- data/ocsana/ocsanabioschemas.jsonld | 4 +- data/ocsestdb/ocsestdbbioschemas.jsonld | 16 +++--- data/octanol/octanolbioschemas.jsonld | 12 ++--- .../octopus-toolkitbioschemas.jsonld | 22 ++++---- data/octopus/octopusbioschemas.jsonld | 4 +- data/odae/odaebioschemas.jsonld | 14 +++--- data/odam/odambioschemas.jsonld | 6 +-- data/odb/odbbioschemas.jsonld | 2 +- data/oddcomp/oddcompbioschemas.jsonld | 10 ++-- data/odseq/odseqbioschemas.jsonld | 8 +-- data/oefinder/oefinderbioschemas.jsonld | 4 +- data/off-spotter/off-spotterbioschemas.jsonld | 4 +- .../off-target_pipelinebioschemas.jsonld | 4 +- data/og/ogbioschemas.jsonld | 12 ++--- data/ogdraw/ogdrawbioschemas.jsonld | 4 +- data/ogee/ogeebioschemas.jsonld | 4 +- data/ognm/ognmbioschemas.jsonld | 4 +- data/ogsa/ogsabioschemas.jsonld | 4 +- data/ogtree_2/ogtree_2bioschemas.jsonld | 4 +- data/ohana/ohanabioschemas.jsonld | 4 +- data/oi_gene/oi_genebioschemas.jsonld | 8 +-- data/oli2go/oli2gobioschemas.jsonld | 2 +- .../oligo-analysisbioschemas.jsonld | 12 ++--- data/oligo/oligobioschemas.jsonld | 18 +++---- data/oligocalc/oligocalcbioschemas.jsonld | 4 +- .../oligoheatmapbioschemas.jsonld | 4 +- data/oligowiz/oligowizbioschemas.jsonld | 4 +- data/olin/olinbioschemas.jsonld | 14 +++--- data/olingui/olinguibioschemas.jsonld | 4 +- data/ols-dialog/ols-dialogbioschemas.jsonld | 4 +- data/ols_dialog/ols_dialogbioschemas.jsonld | 4 +- data/olympus/olympusbioschemas.jsonld | 4 +- data/oma/omabioschemas.jsonld | 20 ++++---- data/omadb/omadbbioschemas.jsonld | 4 +- data/omblast/omblastbioschemas.jsonld | 8 +-- data/omero/omerobioschemas.jsonld | 4 +- data/ometa/ometabioschemas.jsonld | 4 +- data/omia/omiabioschemas.jsonld | 16 +++--- data/omicabel/omicabelbioschemas.jsonld | 4 +- data/omicade4/omicade4bioschemas.jsonld | 28 +++++------ data/omicbrowse/omicbrowsebioschemas.jsonld | 4 +- data/omiccircos/omiccircosbioschemas.jsonld | 4 +- data/omicplotr/omicplotrbioschemas.jsonld | 4 +- .../omicrexposomebioschemas.jsonld | 2 +- data/omics_pipe/omics_pipebioschemas.jsonld | 4 +- data/omicsdi/omicsdibioschemas.jsonld | 4 +- data/omicsmarker/omicsmarkerbioschemas.jsonld | 4 +- data/omicsnet/omicsnetbioschemas.jsonld | 2 +- data/omicsprint/omicsprintbioschemas.jsonld | 4 +- data/omim/omimbioschemas.jsonld | 24 ++++----- .../omim_explorerbioschemas.jsonld | 12 ++--- data/omiras/omirasbioschemas.jsonld | 4 +- .../omnibiomarkerbioschemas.jsonld | 8 +-- data/omnipath/omnipathbioschemas.jsonld | 4 +- .../omokage_searchbioschemas.jsonld | 4 +- data/ompdb/ompdbbioschemas.jsonld | 4 +- .../omssa_parserbioschemas.jsonld | 8 +-- data/omssagui/omssaguibioschemas.jsonld | 4 +- data/omtools/omtoolsbioschemas.jsonld | 8 +-- data/omwsa/omwsabioschemas.jsonld | 4 +- data/oncocnv/oncocnvbioschemas.jsonld | 4 +- data/oncodrivefm/oncodrivefmbioschemas.jsonld | 4 +- data/oncomix/oncomixbioschemas.jsonld | 2 +- data/oncoscore/oncoscorebioschemas.jsonld | 4 +- data/oncosimulr/oncosimulrbioschemas.jsonld | 24 ++++----- data/oncotator/oncotatorbioschemas.jsonld | 4 +- data/ond-crf/ond-crfbioschemas.jsonld | 4 +- .../one_to_threebioschemas.jsonld | 4 +- data/onesense/onesensebioschemas.jsonld | 4 +- .../online_sbml_validatorbioschemas.jsonld | 2 +- data/onlinefdr/onlinefdrbioschemas.jsonld | 4 +- data/onto-tools/onto-toolsbioschemas.jsonld | 4 +- data/ontobrowser/ontobrowserbioschemas.jsonld | 12 ++--- data/ontocat/ontocatbioschemas.jsonld | 8 +-- data/ontocount/ontocountbioschemas.jsonld | 6 +-- data/ontoget/ontogetbioschemas.jsonld | 14 +++--- .../ontogetcommonbioschemas.jsonld | 14 +++--- data/ontogetdown/ontogetdownbioschemas.jsonld | 12 ++--- .../ontogetobsoletebioschemas.jsonld | 14 +++--- data/ontogetroot/ontogetrootbioschemas.jsonld | 14 +++--- data/ontogetsibs/ontogetsibsbioschemas.jsonld | 8 +-- data/ontogetup/ontogetupbioschemas.jsonld | 18 +++---- .../ontoisobsoletebioschemas.jsonld | 14 +++--- data/ontologizer/ontologizerbioschemas.jsonld | 6 +-- data/ontoproc/ontoprocbioschemas.jsonld | 2 +- .../ontoquest_wsbioschemas.jsonld | 4 +- .../ontoquestmainbioschemas.jsonld | 4 +- data/ontotext/ontotextbioschemas.jsonld | 14 +++--- data/oommppaa/oommppaabioschemas.jsonld | 4 +- data/oompa/oompabioschemas.jsonld | 2 +- data/opal/opalbioschemas.jsonld | 8 +-- data/opal_ws/opal_wsbioschemas.jsonld | 4 +- ...profiling_assessment_toolbioschemas.jsonld | 4 +- data/open_babel/open_babelbioschemas.jsonld | 8 +-- data/open_phacts/open_phactsbioschemas.jsonld | 4 +- .../open_phacts_apibioschemas.jsonld | 4 +- .../open_phacts_explorerbioschemas.jsonld | 2 +- ...em_for_rare_diseases_ossebioschemas.jsonld | 2 +- .../open_targetsbioschemas.jsonld | 10 ++-- .../open_targets_platformbioschemas.jsonld | 4 +- .../open_tg-gatesbioschemas.jsonld | 6 +-- data/openalea/openaleabioschemas.jsonld | 4 +- .../openastexviewerbioschemas.jsonld | 2 +- data/openchrom/openchrombioschemas.jsonld | 4 +- data/opencyto/opencytobioschemas.jsonld | 20 ++++---- data/openflu/openflubioschemas.jsonld | 4 +- data/opengrowth/opengrowthbioschemas.jsonld | 4 +- data/openhicamm/openhicammbioschemas.jsonld | 12 ++--- data/openmm/openmmbioschemas.jsonld | 8 +-- data/openms/openmsbioschemas.jsonld | 6 +-- ...enphacts-vis-compoundinfobioschemas.jsonld | 4 +- data/openprimer/openprimerbioschemas.jsonld | 4 +- .../openprimeruibioschemas.jsonld | 4 +- data/opensegspim/opensegspimbioschemas.jsonld | 4 +- data/openspim/openspimbioschemas.jsonld | 4 +- data/openswath/openswathbioschemas.jsonld | 4 +- data/opentrials/opentrialsbioschemas.jsonld | 4 +- data/opossom/opossombioschemas.jsonld | 6 +-- data/oppar/opparbioschemas.jsonld | 2 +- data/optcluster/optclusterbioschemas.jsonld | 20 ++++---- data/optflux/optfluxbioschemas.jsonld | 4 +- data/optimir/optimirbioschemas.jsonld | 8 +-- data/optimizer/optimizerbioschemas.jsonld | 4 +- .../optimus_primerbioschemas.jsonld | 4 +- data/optisel/optiselbioschemas.jsonld | 10 ++-- data/optitope/optitopebioschemas.jsonld | 4 +- data/opweight/opweightbioschemas.jsonld | 4 +- .../orange-bioinformaticsbioschemas.jsonld | 8 +-- data/orange/orangebioschemas.jsonld | 20 ++++---- .../orange_networkbioschemas.jsonld | 8 +-- data/orcae/orcaebioschemas.jsonld | 4 +- data/orcid/orcidbioschemas.jsonld | 4 +- data/orderedlist/orderedlistbioschemas.jsonld | 4 +- data/ordino/ordinobioschemas.jsonld | 4 +- data/ordo/ordobioschemas.jsonld | 6 +-- data/oreganno/oregannobioschemas.jsonld | 4 +- data/orfer/orferbioschemas.jsonld | 4 +- .../orfpredictorbioschemas.jsonld | 4 +- data/organismdbi/organismdbibioschemas.jsonld | 4 +- data/organisms/organismsbioschemas.jsonld | 18 +++---- data/oridb/oridbbioschemas.jsonld | 2 +- data/orio/oriobioschemas.jsonld | 6 +-- data/oriogen/oriogenbioschemas.jsonld | 2 +- data/orion/orionbioschemas.jsonld | 4 +- data/orione/orionebioschemas.jsonld | 8 +-- data/oritfinder/oritfinderbioschemas.jsonld | 4 +- data/orphadata/orphadatabioschemas.jsonld | 8 +-- data/orphanet/orphanetbioschemas.jsonld | 8 +-- data/orthodb/orthodbbioschemas.jsonld | 4 +- .../orthodiseasebioschemas.jsonld | 4 +- data/orthograph/orthographbioschemas.jsonld | 10 ++-- data/ortholugedb/ortholugedbbioschemas.jsonld | 12 ++--- data/orthoscope/orthoscopebioschemas.jsonld | 18 +++---- data/orthovenn/orthovennbioschemas.jsonld | 14 +++--- data/orthovenn2/orthovenn2bioschemas.jsonld | 12 ++--- .../orthsearchservicebioschemas.jsonld | 4 +- data/oryzabase/oryzabasebioschemas.jsonld | 8 +-- data/osanalyzer/osanalyzerbioschemas.jsonld | 20 ++++---- data/osat/osatbioschemas.jsonld | 8 +-- data/osca/oscabioschemas.jsonld | 16 +++--- data/oscope/oscopebioschemas.jsonld | 8 +-- data/osdb_api/osdb_apibioschemas.jsonld | 2 +- data/osml/osmlbioschemas.jsonld | 4 +- data/osprey_vis/osprey_visbioschemas.jsonld | 4 +- data/osse/ossebioschemas.jsonld | 2 +- .../osteoporosatlasbioschemas.jsonld | 8 +-- data/ostrfpd/ostrfpdbioschemas.jsonld | 16 +++--- data/oswitch/oswitchbioschemas.jsonld | 4 +- data/otp/otpbioschemas.jsonld | 12 ++--- data/otubase/otubasebioschemas.jsonld | 2 +- data/oufti/ouftibioschemas.jsonld | 8 +-- data/out2summary/out2summarybioschemas.jsonld | 4 +- data/outlierd/outlierdbioschemas.jsonld | 8 +-- data/outlyzer/outlyzerbioschemas.jsonld | 10 ++-- data/ova/ovabioschemas.jsonld | 4 +- data/ovnip/ovnipbioschemas.jsonld | 4 +- data/oxypred/oxypredbioschemas.jsonld | 4 +- data/p-binder/p-binderbioschemas.jsonld | 4 +- data/p-match/p-matchbioschemas.jsonld | 4 +- data/p-sams/p-samsbioschemas.jsonld | 2 +- data/p-scan/p-scanbioschemas.jsonld | 8 +-- data/p-trap/p-trapbioschemas.jsonld | 4 +- data/p2rp/p2rpbioschemas.jsonld | 6 +-- data/p4p/p4pbioschemas.jsonld | 8 +-- data/p53/p53bioschemas.jsonld | 4 +- data/p53mutagene/p53mutagenebioschemas.jsonld | 2 +- data/pa-sub/pa-subbioschemas.jsonld | 4 +- data/paa/paabioschemas.jsonld | 30 +++++------ ...cbio_sequencing_simulatorbioschemas.jsonld | 12 ++--- data/packmem/packmembioschemas.jsonld | 4 +- .../packmol-memgenbioschemas.jsonld | 4 +- data/pacman/pacmanbioschemas.jsonld | 4 +- data/pacomplex/pacomplexbioschemas.jsonld | 4 +- data/padog/padogbioschemas.jsonld | 8 +-- data/padre/padrebioschemas.jsonld | 4 +- data/padua/paduabioschemas.jsonld | 4 +- data/pagal/pagalbioschemas.jsonld | 18 +++---- data/pageman/pagemanbioschemas.jsonld | 4 +- data/pager/pagerbioschemas.jsonld | 12 ++--- data/paice/paicebioschemas.jsonld | 4 +- data/pair/pairbioschemas.jsonld | 4 +- data/paircompviz/paircompvizbioschemas.jsonld | 8 +-- data/pairheatmap/pairheatmapbioschemas.jsonld | 4 +- data/pal2nal/pal2nalbioschemas.jsonld | 2 +- data/palalign/palalignbioschemas.jsonld | 4 +- data/paleomix/paleomixbioschemas.jsonld | 8 +-- data/pales/palesbioschemas.jsonld | 4 +- data/palindrome/palindromebioschemas.jsonld | 16 +++--- data/palmapper/palmapperbioschemas.jsonld | 4 +- data/palmsiever/palmsieverbioschemas.jsonld | 4 +- data/pals/palsbioschemas.jsonld | 4 +- data/paml/pamlbioschemas.jsonld | 2 +- data/pan-tetris/pan-tetrisbioschemas.jsonld | 2 +- data/pan4draft/pan4draftbioschemas.jsonld | 2 +- data/panacea/panaceabioschemas.jsonld | 14 +++--- data/panada/panadabioschemas.jsonld | 4 +- data/panalyzer/panalyzerbioschemas.jsonld | 4 +- data/panda-view/panda-viewbioschemas.jsonld | 4 +- data/panda/pandabioschemas.jsonld | 4 +- .../panda_associationsbioschemas.jsonld | 4 +- .../panda_xplorerbioschemas.jsonld | 4 +- data/pandar/pandarbioschemas.jsonld | 8 +-- data/pandora/pandorabioschemas.jsonld | 4 +- data/pandrugs/pandrugsbioschemas.jsonld | 10 ++-- data/panelapp/panelappbioschemas.jsonld | 6 +-- data/panfp/panfpbioschemas.jsonld | 4 +- data/pangaea/pangaeabioschemas.jsonld | 4 +- data/pangea/pangeabioschemas.jsonld | 4 +- data/pannbuilder/pannbuilderbioschemas.jsonld | 8 +-- data/pannotator/pannotatorbioschemas.jsonld | 4 +- data/panorama/panoramabioschemas.jsonld | 14 +++--- data/panoromix/panoromixbioschemas.jsonld | 4 +- data/panow/panowbioschemas.jsonld | 4 +- data/panp/panpbioschemas.jsonld | 8 +-- data/panr/panrbioschemas.jsonld | 8 +-- data/panther/pantherbioschemas.jsonld | 4 +- .../pantherscorebioschemas.jsonld | 4 +- .../panvizgeneratorbioschemas.jsonld | 4 +- data/papa/papabioschemas.jsonld | 4 +- data/paparazzi/paparazzibioschemas.jsonld | 4 +- data/paperbot/paperbotbioschemas.jsonld | 10 ++-- data/papi/papibioschemas.jsonld | 8 +-- data/paragraph/paragraphbioschemas.jsonld | 4 +- .../parallelgwasbioschemas.jsonld | 4 +- .../parallelnewhybridbioschemas.jsonld | 4 +- data/paralyzer/paralyzerbioschemas.jsonld | 4 +- .../parameciumdbbioschemas.jsonld | 4 +- data/paratome/paratomebioschemas.jsonld | 4 +- data/parbibit/parbibitbioschemas.jsonld | 4 +- data/parfr/parfrbioschemas.jsonld | 4 +- data/pargenes/pargenesbioschemas.jsonld | 4 +- data/parglms/parglmsbioschemas.jsonld | 4 +- data/parmigene/parmigenebioschemas.jsonld | 4 +- data/parody/parodybioschemas.jsonld | 4 +- data/pars/parsbioschemas.jsonld | 2 +- data/parseq/parseqbioschemas.jsonld | 2 +- data/parsnip/parsnipbioschemas.jsonld | 2 +- .../partek_genomics_suitebioschemas.jsonld | 2 +- .../particlestatsbioschemas.jsonld | 2 +- data/parties/partiesbioschemas.jsonld | 4 +- data/partifold/partifoldbioschemas.jsonld | 2 +- data/partigenedb/partigenedbbioschemas.jsonld | 4 +- data/partsgenie/partsgeniebioschemas.jsonld | 4 +- data/pascca/pasccabioschemas.jsonld | 10 ++-- data/pasd-qc/pasd-qcbioschemas.jsonld | 18 +++---- data/pasgal/pasgalbioschemas.jsonld | 8 +-- data/pasmet/pasmetbioschemas.jsonld | 4 +- data/pasnet/pasnetbioschemas.jsonld | 4 +- data/past/pastbioschemas.jsonld | 4 +- data/pasta/pastabioschemas.jsonld | 24 ++++----- data/pasteseq/pasteseqbioschemas.jsonld | 12 ++--- .../patch-surferbioschemas.jsonld | 2 +- data/patchd/patchdbioschemas.jsonld | 4 +- data/patchdock/patchdockbioschemas.jsonld | 8 +-- data/patchfinder/patchfinderbioschemas.jsonld | 4 +- data/patchsearch/patchsearchbioschemas.jsonld | 2 +- data/patchwork/patchworkbioschemas.jsonld | 4 +- data/patentdata/patentdatabioschemas.jsonld | 4 +- data/path2models/path2modelsbioschemas.jsonld | 2 +- data/path2ppi/path2ppibioschemas.jsonld | 4 +- data/pathbase/pathbasebioschemas.jsonld | 4 +- data/pathbinder/pathbinderbioschemas.jsonld | 4 +- data/pathblast/pathblastbioschemas.jsonld | 2 +- data/pathcnn/pathcnnbioschemas.jsonld | 4 +- .../pathcrosstalkbioschemas.jsonld | 6 +-- data/pathdeseq/pathdeseqbioschemas.jsonld | 4 +- data/pathema/pathemabioschemas.jsonld | 4 +- data/pathfindr/pathfindrbioschemas.jsonld | 22 ++++---- data/pathfxweb/pathfxwebbioschemas.jsonld | 2 +- data/pathicular/pathicularbioschemas.jsonld | 4 +- data/pathiways/pathiwaysbioschemas.jsonld | 4 +- data/pathjam/pathjambioschemas.jsonld | 4 +- data/pathme/pathmebioschemas.jsonld | 16 +++--- data/pathnet/pathnetbioschemas.jsonld | 22 ++++---- .../pathospotter-kbioschemas.jsonld | 4 +- data/pathostat/pathostatbioschemas.jsonld | 4 +- data/pathpred/pathpredbioschemas.jsonld | 4 +- data/pathprint/pathprintbioschemas.jsonld | 8 +-- data/pathrender/pathrenderbioschemas.jsonld | 4 +- data/pathrings/pathringsbioschemas.jsonld | 10 ++-- data/pathrnet/pathrnetbioschemas.jsonld | 8 +-- data/pathscore/pathscorebioschemas.jsonld | 4 +- data/pathvar/pathvarbioschemas.jsonld | 8 +-- data/pathview/pathviewbioschemas.jsonld | 18 +++---- .../pathview_webbioschemas.jsonld | 8 +-- data/pathvisio/pathvisiobioschemas.jsonld | 16 +++--- .../pathway_commonsbioschemas.jsonld | 4 +- .../pathway_hunter_toolbioschemas.jsonld | 4 +- .../pathway_inspectorbioschemas.jsonld | 4 +- .../pathway_minerbioschemas.jsonld | 4 +- .../pathway_projectorbioschemas.jsonld | 4 +- .../pathway_toolsbioschemas.jsonld | 2 +- ...aycommons_sparql_endpointbioschemas.jsonld | 8 +-- ...aycommons_web_service_apibioschemas.jsonld | 12 ++--- .../pathwaymatrixbioschemas.jsonld | 2 +- .../pathwaysplicebioschemas.jsonld | 4 +- .../patient_archivebioschemas.jsonld | 20 ++++---- data/patman/patmanbioschemas.jsonld | 4 +- data/patmatch/patmatchbioschemas.jsonld | 4 +- data/patmatdb/patmatdbbioschemas.jsonld | 18 +++---- .../patmatmotifsbioschemas.jsonld | 8 +-- data/patristic/patristicbioschemas.jsonld | 4 +- data/patrocles/patroclesbioschemas.jsonld | 4 +- data/patsearch/patsearchbioschemas.jsonld | 8 +-- data/patsi/patsibioschemas.jsonld | 8 +-- .../patternexplorerbioschemas.jsonld | 2 +- data/patternlab/patternlabbioschemas.jsonld | 4 +- .../patternquerybioschemas.jsonld | 6 +-- data/paxdb/paxdbbioschemas.jsonld | 4 +- data/paxtools/paxtoolsbioschemas.jsonld | 4 +- data/paxtoolsr/paxtoolsrbioschemas.jsonld | 18 +++---- data/pazar/pazarbioschemas.jsonld | 4 +- data/pbase/pbasebioschemas.jsonld | 8 +-- data/pbeq-solver/pbeq-solverbioschemas.jsonld | 4 +- data/pbil/pbilbioschemas.jsonld | 4 +- data/pblat/pblatbioschemas.jsonld | 18 +++---- data/pbm/pbmbioschemas.jsonld | 2 +- data/pboost/pboostbioschemas.jsonld | 4 +- data/pbrowse/pbrowsebioschemas.jsonld | 18 +++---- data/pca-pam50/pca-pam50bioschemas.jsonld | 4 +- data/pcadapt/pcadaptbioschemas.jsonld | 4 +- data/pcaexplorer/pcaexplorerbioschemas.jsonld | 2 +- .../pcagopromoterbioschemas.jsonld | 8 +-- data/pcaj/pcajbioschemas.jsonld | 2 +- data/pcamethods/pcamethodsbioschemas.jsonld | 4 +- data/pcan/pcanbioschemas.jsonld | 44 ++++++++-------- data/pcareduce/pcareducebioschemas.jsonld | 4 +- data/pcasuite/pcasuitebioschemas.jsonld | 2 +- data/pcddb/pcddbbioschemas.jsonld | 4 +- data/pcetk/pcetkbioschemas.jsonld | 4 +- data/pcgr/pcgrbioschemas.jsonld | 4 +- data/pchat/pchatbioschemas.jsonld | 4 +- data/pci-ss/pci-ssbioschemas.jsonld | 2 +- data/pci/pcibioschemas.jsonld | 2 +- .../pcircrna_finderbioschemas.jsonld | 8 +-- data/pcit/pcitbioschemas.jsonld | 2 +- data/pcleavage/pcleavagebioschemas.jsonld | 2 +- data/pclogit/pclogitbioschemas.jsonld | 4 +- data/pclust/pclustbioschemas.jsonld | 12 ++--- data/pcoils/pcoilsbioschemas.jsonld | 4 +- data/pcons/pconsbioschemas.jsonld | 4 +- data/pcp/pcpbioschemas.jsonld | 4 +- data/pcpheno/pcphenobioschemas.jsonld | 8 +-- .../pcrclipreadsbioschemas.jsonld | 4 +- data/pcrpi-db/pcrpi-dbbioschemas.jsonld | 4 +- data/pcrsetup/pcrsetupbioschemas.jsonld | 4 +- data/pcrtiler/pcrtilerbioschemas.jsonld | 12 ++--- data/pcs/pcsbioschemas.jsonld | 4 +- data/pcscs/pcscsbioschemas.jsonld | 2 +- data/pcxn/pcxnbioschemas.jsonld | 2 +- data/pdart/pdartbioschemas.jsonld | 4 +- data/pdb-blast/pdb-blastbioschemas.jsonld | 4 +- .../pdb-explorerbioschemas.jsonld | 4 +- data/pdb-tools/pdb-toolsbioschemas.jsonld | 4 +- data/pdb/pdbbioschemas.jsonld | 6 +-- data/pdb2pqr/pdb2pqrbioschemas.jsonld | 4 +- data/pdb_extract/pdb_extractbioschemas.jsonld | 4 +- data/pdb_hydro/pdb_hydrobioschemas.jsonld | 4 +- data/pdb_redo/pdb_redobioschemas.jsonld | 2 +- data/pdbe/pdbebioschemas.jsonld | 4 +- data/pdbefold/pdbefoldbioschemas.jsonld | 4 +- data/pdbemotif/pdbemotifbioschemas.jsonld | 4 +- data/pdbepisa/pdbepisabioschemas.jsonld | 6 +-- data/pdbest/pdbestbioschemas.jsonld | 8 +-- data/pdbexplore/pdbexplorebioschemas.jsonld | 8 +-- data/pdbfinder/pdbfinderbioschemas.jsonld | 4 +- data/pdbinout/pdbinoutbioschemas.jsonld | 4 +- data/pdbsitescan/pdbsitescanbioschemas.jsonld | 4 +- data/pdbsum/pdbsumbioschemas.jsonld | 26 +++++----- .../pdbsum_generatebioschemas.jsonld | 8 +-- .../pdbusqlextractorbioschemas.jsonld | 16 +++--- data/pdegem/pdegembioschemas.jsonld | 4 +- data/pdeparams/pdeparamsbioschemas.jsonld | 4 +- data/pdestrian/pdestrianbioschemas.jsonld | 20 ++++---- data/pdid/pdidbioschemas.jsonld | 8 +-- data/pdiviz/pdivizbioschemas.jsonld | 2 +- data/pdmclass/pdmclassbioschemas.jsonld | 8 +-- data/pdzpepint/pdzpepintbioschemas.jsonld | 4 +- data/pe_filter/pe_filterbioschemas.jsonld | 4 +- data/peak2bed/peak2bedbioschemas.jsonld | 4 +- .../peakanalyzerbioschemas.jsonld | 4 +- data/peakc/peakcbioschemas.jsonld | 4 +- .../peakcalling_findpeaksbioschemas.jsonld | 4 +- data/peaklink/peaklinkbioschemas.jsonld | 4 +- data/peakquant/peakquantbioschemas.jsonld | 2 +- data/peakseq/peakseqbioschemas.jsonld | 4 +- data/peaktrace/peaktracebioschemas.jsonld | 2 +- data/peakzilla/peakzillabioschemas.jsonld | 4 +- data/peas/peasbioschemas.jsonld | 4 +- data/pease/peasebioschemas.jsonld | 4 +- data/peca/pecabioschemas.jsonld | 4 +- data/pecop/pecopbioschemas.jsonld | 4 +- data/ped/pedbioschemas.jsonld | 4 +- data/pedhunter/pedhunterbioschemas.jsonld | 4 +- data/pedibd/pedibdbioschemas.jsonld | 4 +- data/pedican/pedicanbioschemas.jsonld | 14 +++--- data/pedigreejs/pedigreejsbioschemas.jsonld | 4 +- data/pedigreesim/pedigreesimbioschemas.jsonld | 4 +- data/pedisnp/pedisnpbioschemas.jsonld | 4 +- data/pedpeel/pedpeelbioschemas.jsonld | 4 +- data/pedro/pedrobioschemas.jsonld | 4 +- data/pedsys/pedsysbioschemas.jsonld | 4 +- data/peffect/peffectbioschemas.jsonld | 8 +-- data/pegasys/pegasysbioschemas.jsonld | 4 +- data/pele/pelebioschemas.jsonld | 4 +- data/penncnv2/penncnv2bioschemas.jsonld | 2 +- data/pennseq/pennseqbioschemas.jsonld | 4 +- data/pep-fold/pep-foldbioschemas.jsonld | 12 ++--- .../pep-sitefinderbioschemas.jsonld | 8 +-- data/pep2path/pep2pathbioschemas.jsonld | 10 ++-- data/pepbindpred/pepbindpredbioschemas.jsonld | 8 +-- data/pepcoil/pepcoilbioschemas.jsonld | 16 +++--- data/pepdigest/pepdigestbioschemas.jsonld | 12 ++--- .../pepdistillerbioschemas.jsonld | 4 +- data/pepexplorer/pepexplorerbioschemas.jsonld | 8 +-- data/pepfoot/pepfootbioschemas.jsonld | 4 +- data/pepinfo-ebi/pepinfo-ebibioschemas.jsonld | 8 +-- data/pepinfo/pepinfobioschemas.jsonld | 6 +-- data/pepis/pepisbioschemas.jsonld | 2 +- data/pepmapper/pepmapperbioschemas.jsonld | 4 +- data/pepmmsmimic/pepmmsmimicbioschemas.jsonld | 2 +- data/pepnet/pepnetbioschemas.jsonld | 6 +-- data/pepnovo/pepnovobioschemas.jsonld | 4 +- data/pepper/pepperbioschemas.jsonld | 4 +- data/peppsy/peppsybioschemas.jsonld | 8 +-- data/peppy/peppybioschemas.jsonld | 4 +- data/pepquery/pepquerybioschemas.jsonld | 8 +-- data/pepr/peprbioschemas.jsonld | 4 +- data/pepserve/pepservebioschemas.jsonld | 4 +- data/pepshell/pepshellbioschemas.jsonld | 4 +- data/pepstat/pepstatbioschemas.jsonld | 4 +- .../pepstats-ebibioschemas.jsonld | 8 +-- data/pepstats/pepstatsbioschemas.jsonld | 8 +-- data/pepstr/pepstrbioschemas.jsonld | 4 +- .../pepsweetenerbioschemas.jsonld | 4 +- .../peptideatlasbioschemas.jsonld | 4 +- .../peptidelocatorbioschemas.jsonld | 2 +- data/peptidemass/peptidemassbioschemas.jsonld | 4 +- .../peptideshakerbioschemas.jsonld | 8 +-- data/peptimapper/peptimapperbioschemas.jsonld | 12 ++--- data/peptizer/peptizerbioschemas.jsonld | 8 +-- data/pepvac/pepvacbioschemas.jsonld | 4 +- data/pepwheel/pepwheelbioschemas.jsonld | 14 +++--- .../pepwindow-ebibioschemas.jsonld | 8 +-- data/pepwindow/pepwindowbioschemas.jsonld | 14 +++--- .../pepwindowallbioschemas.jsonld | 12 ++--- .../pepxml2excelbioschemas.jsonld | 4 +- data/pepxmltab/pepxmltabbioschemas.jsonld | 4 +- data/per_viewer/per_viewerbioschemas.jsonld | 4 +- data/pergola-web/pergola-webbioschemas.jsonld | 24 ++++----- data/pergola/pergolabioschemas.jsonld | 16 +++--- data/periscope/periscopebioschemas.jsonld | 4 +- data/peroxibase/peroxibasebioschemas.jsonld | 6 +-- .../peroxisomedbbioschemas.jsonld | 32 ++++++------ .../personal_genome_browserbioschemas.jsonld | 4 +- data/perturbatr/perturbatrbioschemas.jsonld | 4 +- data/pesi_ws/pesi_wsbioschemas.jsonld | 4 +- data/pespotdb/pespotdbbioschemas.jsonld | 30 +++++------ data/pest/pestbioschemas.jsonld | 4 +- .../petfold_and_petcofoldbioschemas.jsonld | 4 +- data/pevosoar/pevosoarbioschemas.jsonld | 4 +- data/pez/pezbioschemas.jsonld | 2 +- data/pfam/pfambioschemas.jsonld | 6 +-- .../pfamscan_apibioschemas.jsonld | 2 +- data/pflexana/pflexanabioschemas.jsonld | 4 +- data/pfmpred/pfmpredbioschemas.jsonld | 4 +- data/pfond/pfondbioschemas.jsonld | 6 +-- data/pfp-go/pfp-gobioschemas.jsonld | 4 +- data/pfp-pred/pfp-predbioschemas.jsonld | 4 +- data/pfp/pfpbioschemas.jsonld | 4 +- data/pfstats/pfstatsbioschemas.jsonld | 2 +- data/pftools/pftoolsbioschemas.jsonld | 4 +- data/pga/pgabioschemas.jsonld | 28 +++++------ data/pgca/pgcabioschemas.jsonld | 12 ++--- data/pgd/pgdbioschemas.jsonld | 8 +-- data/pgenn/pgennbioschemas.jsonld | 4 +- .../pgltools-chromatinbioschemas.jsonld | 16 +++--- data/pgltools/pgltoolsbioschemas.jsonld | 8 +-- data/pgm/pgmbioschemas.jsonld | 4 +- data/pgp/pgpbioschemas.jsonld | 12 ++--- data/pgql/pgqlbioschemas.jsonld | 4 +- data/pgrnafinder/pgrnafinderbioschemas.jsonld | 8 +-- .../pgs_classifybioschemas.jsonld | 4 +- data/pgsea/pgseabioschemas.jsonld | 2 +- data/pgx/pgxbioschemas.jsonld | 4 +- data/phaedra/phaedrabioschemas.jsonld | 4 +- data/phageterm/phagetermbioschemas.jsonld | 8 +-- data/phaistos/phaistosbioschemas.jsonld | 4 +- data/phantasus/phantasusbioschemas.jsonld | 4 +- .../phantompeakqualtoolsbioschemas.jsonld | 6 +-- data/pharmacogx/pharmacogxbioschemas.jsonld | 2 +- data/pharmagist/pharmagistbioschemas.jsonld | 4 +- data/pharmgkb/pharmgkbbioschemas.jsonld | 14 +++--- .../pharmmapper-drugbioschemas.jsonld | 14 +++--- data/phase/phasebioschemas.jsonld | 4 +- data/phasebook/phasebookbioschemas.jsonld | 8 +-- data/phaser/phaserbioschemas.jsonld | 4 +- data/phast/phastbioschemas.jsonld | 4 +- data/phaster/phasterbioschemas.jsonld | 14 +++--- data/phat/phatbioschemas.jsonld | 4 +- data/phd-snp/phd-snpbioschemas.jsonld | 8 +-- data/phd-snpg/phd-snpgbioschemas.jsonld | 20 ++++---- data/phdcleav/phdcleavbioschemas.jsonld | 4 +- data/phdhtm/phdhtmbioschemas.jsonld | 8 +-- data/pheatmap/pheatmapbioschemas.jsonld | 2 +- data/pheg/phegbioschemas.jsonld | 4 +- data/phegenex/phegenexbioschemas.jsonld | 4 +- data/phen-gen/phen-genbioschemas.jsonld | 4 +- data/phenetic/pheneticbioschemas.jsonld | 4 +- .../phenetic_eqtlbioschemas.jsonld | 8 +-- data/phenobook/phenobookbioschemas.jsonld | 12 ++--- data/phenodigm/phenodigmbioschemas.jsonld | 10 ++-- data/phenodis/phenodisbioschemas.jsonld | 22 ++++---- data/phenodist/phenodistbioschemas.jsonld | 32 ++++++------ .../phenoforecasterbioschemas.jsonld | 4 +- .../phenogenerankerbioschemas.jsonld | 2 +- data/phenogmm/phenogmmbioschemas.jsonld | 4 +- data/phenohm/phenohmbioschemas.jsonld | 2 +- data/phenolyzer/phenolyzerbioschemas.jsonld | 4 +- .../phenomecentralbioschemas.jsonld | 22 ++++---- data/phenomenal/phenomenalbioschemas.jsonld | 8 +-- data/phenominer/phenominerbioschemas.jsonld | 10 ++-- data/phenomizer/phenomizerbioschemas.jsonld | 4 +- data/phenopath/phenopathbioschemas.jsonld | 4 +- data/phenopred/phenopredbioschemas.jsonld | 4 +- .../phenoscannerbioschemas.jsonld | 10 ++-- data/phenosim/phenosimbioschemas.jsonld | 2 +- data/phenotator/phenotatorbioschemas.jsonld | 4 +- data/phenotest/phenotestbioschemas.jsonld | 4 +- .../phenotypesimulatorbioschemas.jsonld | 4 +- data/phenstat/phenstatbioschemas.jsonld | 10 ++-- .../phenx_toolkitbioschemas.jsonld | 6 +-- data/phesant/phesantbioschemas.jsonld | 16 +++--- data/phever/pheverbioschemas.jsonld | 4 +- data/phewas/phewasbioschemas.jsonld | 4 +- .../phewas_clinicalbioschemas.jsonld | 4 +- data/phi-base/phi-basebioschemas.jsonld | 16 +++--- data/philr/philrbioschemas.jsonld | 8 +-- data/phire/phirebioschemas.jsonld | 4 +- data/phisite/phisitebioschemas.jsonld | 4 +- data/phlawd/phlawdbioschemas.jsonld | 4 +- data/phmmer/phmmerbioschemas.jsonld | 42 ++++++++-------- data/phobius/phobiusbioschemas.jsonld | 4 +- data/phobius_api/phobius_apibioschemas.jsonld | 4 +- data/phobos/phobosbioschemas.jsonld | 4 +- data/phos3d/phos3dbioschemas.jsonld | 4 +- data/phosfer/phosferbioschemas.jsonld | 4 +- data/phosfinder/phosfinderbioschemas.jsonld | 4 +- data/phosida/phosidabioschemas.jsonld | 4 +- .../phosnetconstructbioschemas.jsonld | 4 +- data/phosphat/phosphatbioschemas.jsonld | 4 +- data/phospho3d/phospho3dbioschemas.jsonld | 6 +-- data/phosphoelm/phosphoelmbioschemas.jsonld | 18 +++---- .../phosphonormalizerbioschemas.jsonld | 4 +- data/phosphopick/phosphopickbioschemas.jsonld | 4 +- .../phosphopredictbioschemas.jsonld | 4 +- .../phosphorthologbioschemas.jsonld | 14 +++--- .../phosphositeplusbioschemas.jsonld | 2 +- data/phosphosvm/phosphosvmbioschemas.jsonld | 4 +- data/phossnp/phossnpbioschemas.jsonld | 8 +-- data/phostryp/phostrypbioschemas.jsonld | 4 +- data/phplabware/phplabwarebioschemas.jsonld | 4 +- data/phpred/phpredbioschemas.jsonld | 4 +- data/phred/phredbioschemas.jsonld | 2 +- .../phredphrapconsedbioschemas.jsonld | 4 +- data/phuser/phuserbioschemas.jsonld | 4 +- data/phy-mer/phy-merbioschemas.jsonld | 2 +- data/phycas/phycasbioschemas.jsonld | 4 +- data/phyd3/phyd3bioschemas.jsonld | 4 +- data/phyinformr/phyinformrbioschemas.jsonld | 16 +++--- data/phyleasprog/phyleasprogbioschemas.jsonld | 2 +- data/phylemon/phylemonbioschemas.jsonld | 8 +-- data/phylip/phylipbioschemas.jsonld | 4 +- data/phylo-mlogo/phylo-mlogobioschemas.jsonld | 4 +- data/phylo-node/phylo-nodebioschemas.jsonld | 6 +-- data/phylo/phylobioschemas.jsonld | 2 +- data/phylobot/phylobotbioschemas.jsonld | 4 +- data/phylodome/phylodomebioschemas.jsonld | 4 +- data/phylodyn/phylodynbioschemas.jsonld | 8 +-- .../phylogenetics_at_jstbioschemas.jsonld | 4 +- .../phylogeny_iobioschemas.jsonld | 24 ++++----- data/phylogeoref/phylogeorefbioschemas.jsonld | 4 +- data/phylogibbs/phylogibbsbioschemas.jsonld | 4 +- data/phyloligo/phyloligobioschemas.jsonld | 4 +- data/phylomad/phylomadbioschemas.jsonld | 2 +- data/phylommand/phylommandbioschemas.jsonld | 4 +- data/phylopars/phyloparsbioschemas.jsonld | 2 +- data/phylopat/phylopatbioschemas.jsonld | 2 +- data/phylopdb/phylopdbbioschemas.jsonld | 6 +-- data/phyloprofil/phyloprofilbioschemas.jsonld | 4 +- .../phyloprofilebioschemas.jsonld | 4 +- .../phylopythiasbioschemas.jsonld | 4 +- data/phyloseq/phyloseqbioschemas.jsonld | 20 ++++---- data/phylosift/phylosiftbioschemas.jsonld | 4 +- data/phylosim/phylosimbioschemas.jsonld | 4 +- data/phylotar/phylotarbioschemas.jsonld | 10 ++-- data/phylotol/phylotolbioschemas.jsonld | 10 ++-- data/phylotrac/phylotracbioschemas.jsonld | 4 +- data/phylotu/phylotubioschemas.jsonld | 2 +- data/phyloviz/phylovizbioschemas.jsonld | 4 +- data/phylowood/phylowoodbioschemas.jsonld | 12 ++--- data/phyluce/phylucebioschemas.jsonld | 4 +- data/phyml/phymlbioschemas.jsonld | 8 +-- data/phymyco-db/phymyco-dbbioschemas.jsonld | 4 +- data/phyre/phyrebioschemas.jsonld | 4 +- data/phyrerisk/phyreriskbioschemas.jsonld | 16 +++--- data/phyrex/phyrexbioschemas.jsonld | 2 +- data/physbinder/physbinderbioschemas.jsonld | 12 ++--- .../physiolibrarybioschemas.jsonld | 4 +- data/physortr/physortrbioschemas.jsonld | 10 ++-- data/phytb/phytbbioschemas.jsonld | 18 +++---- data/phytotypedb/phytotypedbbioschemas.jsonld | 20 ++++---- data/phytozome/phytozomebioschemas.jsonld | 4 +- data/pi/pibioschemas.jsonld | 4 +- data/pi2pe/pi2pebioschemas.jsonld | 4 +- data/pia/piabioschemas.jsonld | 16 +++--- data/piage/piagebioschemas.jsonld | 4 +- data/piana/pianabioschemas.jsonld | 2 +- data/piano/pianobioschemas.jsonld | 12 ++--- data/pica/picabioschemas.jsonld | 12 ++--- data/picard_arrg/picard_arrgbioschemas.jsonld | 4 +- .../picard_bamindexstatsbioschemas.jsonld | 4 +- .../picard_fastqtosambioschemas.jsonld | 2 +- .../picard_reordersambioschemas.jsonld | 2 +- .../picard_replacesamheaderbioschemas.jsonld | 4 +- .../picard_samtofastqbioschemas.jsonld | 4 +- .../picard_toolsbioschemas.jsonld | 4 +- .../picardasmetricsbioschemas.jsonld | 4 +- .../picardgcbiasmetricsbioschemas.jsonld | 4 +- .../picardhsmetricsbioschemas.jsonld | 2 +- data/pickgene/pickgenebioschemas.jsonld | 2 +- data/pickle/picklebioschemas.jsonld | 22 ++++---- data/picmi/picmibioschemas.jsonld | 2 +- data/picr/picrbioschemas.jsonld | 4 +- data/pics/picsbioschemas.jsonld | 16 +++--- data/pictar/pictarbioschemas.jsonld | 4 +- .../picturedrocksbioschemas.jsonld | 4 +- data/pidna/pidnabioschemas.jsonld | 4 +- data/pie/piebioschemas.jsonld | 4 +- data/pifs/pifsbioschemas.jsonld | 4 +- data/pigengene/pigengenebioschemas.jsonld | 14 +++--- data/pileline/pilelinebioschemas.jsonld | 28 +++++------ data/pileup2cov/pileup2covbioschemas.jsonld | 4 +- .../pileup_to_vcfbioschemas.jsonld | 2 +- data/pilon/pilonbioschemas.jsonld | 4 +- data/pimp/pimpbioschemas.jsonld | 4 +- data/pims_lims/pims_limsbioschemas.jsonld | 8 +-- data/pina/pinabioschemas.jsonld | 2 +- data/pinalog/pinalogbioschemas.jsonld | 4 +- data/pindel/pindelbioschemas.jsonld | 18 +++---- data/ping/pingbioschemas.jsonld | 12 ++--- data/pingo/pingobioschemas.jsonld | 4 +- data/pingpongpro/pingpongprobioschemas.jsonld | 4 +- data/pinmol/pinmolbioschemas.jsonld | 4 +- data/pinpor/pinporbioschemas.jsonld | 2 +- data/pinsplus/pinsplusbioschemas.jsonld | 4 +- data/pint/pintbioschemas.jsonld | 2 +- .../pint_pathwaysbioschemas.jsonld | 4 +- data/pinta/pintabioschemas.jsonld | 4 +- data/pintron/pintronbioschemas.jsonld | 8 +-- data/pints/pintsbioschemas.jsonld | 4 +- data/pipasic/pipasicbioschemas.jsonld | 4 +- data/pipealign/pipealignbioschemas.jsonld | 4 +- .../pipeline_pilotbioschemas.jsonld | 4 +- data/pipelinedog/pipelinedogbioschemas.jsonld | 8 +-- data/piphillin/piphillinbioschemas.jsonld | 14 +++--- data/pipred/pipredbioschemas.jsonld | 8 +-- data/pipsa/pipsabioschemas.jsonld | 2 +- data/piqmie/piqmiebioschemas.jsonld | 24 ++++----- data/pir/pirbioschemas.jsonld | 4 +- data/pirsf/pirsfbioschemas.jsonld | 2 +- data/pita/pitabioschemas.jsonld | 4 +- data/pitufo/pitufobioschemas.jsonld | 4 +- data/pixie/pixiebioschemas.jsonld | 8 +-- data/pizsa/pizsabioschemas.jsonld | 10 ++-- .../pklfilemergerbioschemas.jsonld | 2 +- data/pknotsrg/pknotsrgbioschemas.jsonld | 4 +- data/pla/plabioschemas.jsonld | 4 +- data/plaac/plaacbioschemas.jsonld | 2 +- data/plabipd/plabipdbioschemas.jsonld | 4 +- data/placnetw/placnetwbioschemas.jsonld | 8 +-- data/plan2l/plan2lbioschemas.jsonld | 4 +- data/plandbaffy/plandbaffybioschemas.jsonld | 4 +- data/planet/planetbioschemas.jsonld | 4 +- data/plannet/plannetbioschemas.jsonld | 4 +- data/plantaligdb/plantaligdbbioschemas.jsonld | 4 +- data/plantcv_v2/plantcv_v2bioschemas.jsonld | 12 ++--- data/plantgsea/plantgseabioschemas.jsonld | 2 +- .../plantmetabolomicsbioschemas.jsonld | 4 +- data/plantnatsdb/plantnatsdbbioschemas.jsonld | 2 +- data/plantpan/plantpanbioschemas.jsonld | 4 +- data/plantphos/plantphosbioschemas.jsonld | 4 +- data/plantpis/plantpisbioschemas.jsonld | 4 +- data/plantrgs/plantrgsbioschemas.jsonld | 2 +- data/plantsdb/plantsdbbioschemas.jsonld | 6 +-- data/planttfcat/planttfcatbioschemas.jsonld | 16 +++--- data/planttfdb/planttfdbbioschemas.jsonld | 2 +- .../plasmidspadesbioschemas.jsonld | 4 +- data/plasmodesma/plasmodesmabioschemas.jsonld | 2 +- .../plasmodium_autocountbioschemas.jsonld | 4 +- data/plass/plassbioschemas.jsonld | 14 +++--- data/plast/plastbioschemas.jsonld | 4 +- data/plastid/plastidbioschemas.jsonld | 8 +-- .../plastid_genome_annotatorbioschemas.jsonld | 8 +-- data/plata/platabioschemas.jsonld | 2 +- data/platecore/platecorebioschemas.jsonld | 8 +-- ...utocomplete_on_ontologiesbioschemas.jsonld | 4 +- .../plaza_dicotsbioschemas.jsonld | 4 +- .../plaza_monocotsbioschemas.jsonld | 4 +- data/plecdom/plecdombioschemas.jsonld | 2 +- data/plek/plekbioschemas.jsonld | 4 +- data/plethy/plethybioschemas.jsonld | 2 +- data/plexdb/plexdbbioschemas.jsonld | 14 +++--- data/plgem/plgembioschemas.jsonld | 24 ++++----- data/plier/plierbioschemas.jsonld | 8 +-- data/plink-ss/plink-ssbioschemas.jsonld | 4 +- data/plink/plinkbioschemas.jsonld | 4 +- data/plip/plipbioschemas.jsonld | 4 +- data/plmla/plmlabioschemas.jsonld | 4 +- data/plnseq/plnseqbioschemas.jsonld | 4 +- data/plntfdb/plntfdbbioschemas.jsonld | 4 +- .../ploc_bal-meukbioschemas.jsonld | 2 +- data/plot/plotbioschemas.jsonld | 4 +- data/plotcon/plotconbioschemas.jsonld | 10 ++-- .../plotgenomecoveragebioschemas.jsonld | 4 +- data/plotibd/plotibdbioschemas.jsonld | 14 +++--- data/plotorf/plotorfbioschemas.jsonld | 10 ++-- data/plpe/plpebioschemas.jsonld | 4 +- data/plrs/plrsbioschemas.jsonld | 4 +- data/pluma/plumabioschemas.jsonld | 4 +- data/pluri-iq/pluri-iqbioschemas.jsonld | 16 +++--- data/pluripred/pluripredbioschemas.jsonld | 4 +- data/plw/plwbioschemas.jsonld | 12 ++--- data/plyranges/plyrangesbioschemas.jsonld | 4 +- data/pma/pmabioschemas.jsonld | 8 +-- data/pmdb/pmdbbioschemas.jsonld | 4 +- data/pmirkb/pmirkbbioschemas.jsonld | 8 +-- data/pmle/pmlebioschemas.jsonld | 4 +- data/pmm/pmmbioschemas.jsonld | 2 +- data/pmrd/pmrdbioschemas.jsonld | 4 +- data/pmsearch/pmsearchbioschemas.jsonld | 2 +- data/pmut/pmutbioschemas.jsonld | 4 +- data/pn-bottm/pn-bottmbioschemas.jsonld | 4 +- data/pnns/pnnsbioschemas.jsonld | 4 +- data/pobo/pobobioschemas.jsonld | 4 +- data/pocketzebra/pocketzebrabioschemas.jsonld | 4 +- data/poco/pocobioschemas.jsonld | 2 +- data/podkat/podkatbioschemas.jsonld | 8 +-- data/poeas/poeasbioschemas.jsonld | 4 +- data/poets/poetsbioschemas.jsonld | 10 ++-- data/pogos/pogosbioschemas.jsonld | 4 +- .../pointcloudxplorebioschemas.jsonld | 4 +- data/poissonseq/poissonseqbioschemas.jsonld | 4 +- data/pol3scan/pol3scanbioschemas.jsonld | 8 +-- data/polbase/polbasebioschemas.jsonld | 4 +- data/polnet/polnetbioschemas.jsonld | 2 +- data/poly/polybioschemas.jsonld | 4 +- data/polyadq/polyadqbioschemas.jsonld | 2 +- data/polyamotif/polyamotifbioschemas.jsonld | 2 +- data/polyapeak/polyapeakbioschemas.jsonld | 4 +- data/polyclustr/polyclustrbioschemas.jsonld | 4 +- data/polydot/polydotbioschemas.jsonld | 8 +-- data/polyester/polyesterbioschemas.jsonld | 4 +- data/polyfit/polyfitbioschemas.jsonld | 8 +-- .../polygenicpathwaysbioschemas.jsonld | 4 +- data/polyhap/polyhapbioschemas.jsonld | 4 +- data/polymarker/polymarkerbioschemas.jsonld | 8 +-- data/polymirts/polymirtsbioschemas.jsonld | 4 +- .../polypharmacology_browserbioschemas.jsonld | 22 ++++---- data/polyphen-2/polyphen-2bioschemas.jsonld | 28 +++++------ data/polyphred/polyphredbioschemas.jsonld | 8 +-- data/polyq/polyqbioschemas.jsonld | 4 +- data/polysearch/polysearchbioschemas.jsonld | 4 +- data/polysearch2/polysearch2bioschemas.jsonld | 8 +-- .../polyunphasedbioschemas.jsonld | 4 +- data/polyview-2d/polyview-2dbioschemas.jsonld | 2 +- data/polyview-mm/polyview-mmbioschemas.jsonld | 4 +- data/pombase/pombasebioschemas.jsonld | 4 +- ...ombase_assembly_converterbioschemas.jsonld | 2 +- .../pombase_motif_searchbioschemas.jsonld | 4 +- data/pombase_vep/pombase_vepbioschemas.jsonld | 4 +- data/pomelo_ii/pomelo_iibioschemas.jsonld | 4 +- data/pomo/pomobioschemas.jsonld | 4 +- data/pon-diso/pon-disobioschemas.jsonld | 4 +- data/pongo/pongobioschemas.jsonld | 4 +- data/pool-hmm/pool-hmmbioschemas.jsonld | 4 +- data/poolhap2/poolhap2bioschemas.jsonld | 2 +- data/pooling/poolingbioschemas.jsonld | 2 +- data/popabc/popabcbioschemas.jsonld | 4 +- data/popdel/popdelbioschemas.jsonld | 4 +- data/popgev/popgevbioschemas.jsonld | 6 +-- data/pophelper/pophelperbioschemas.jsonld | 4 +- data/popi/popibioschemas.jsonld | 4 +- data/popisk/popiskbioschemas.jsonld | 4 +- data/popitam/popitambioschemas.jsonld | 4 +- data/poplddecay/poplddecaybioschemas.jsonld | 4 +- data/popoolation/popoolationbioschemas.jsonld | 4 +- .../pops-proteasebioschemas.jsonld | 4 +- data/popscomp/popscompbioschemas.jsonld | 4 +- .../populationprofilerbioschemas.jsonld | 4 +- data/porcupine/porcupinebioschemas.jsonld | 4 +- data/porelogo/porelogobioschemas.jsonld | 4 +- data/poretools/poretoolsbioschemas.jsonld | 4 +- data/porewalker/porewalkerbioschemas.jsonld | 4 +- data/porgy/porgybioschemas.jsonld | 4 +- data/porter/porterbioschemas.jsonld | 18 +++---- data/porter5/porter5bioschemas.jsonld | 4 +- data/portrait/portraitbioschemas.jsonld | 8 +-- data/posa/posabioschemas.jsonld | 4 +- data/possum-cis/possum-cisbioschemas.jsonld | 4 +- data/possum-pssm/possum-pssmbioschemas.jsonld | 8 +-- data/possum/possumbioschemas.jsonld | 4 +- .../possumsearchbioschemas.jsonld | 4 +- .../possumsearch2bioschemas.jsonld | 8 +-- data/post/postbioschemas.jsonld | 4 +- data/postman/postmanbioschemas.jsonld | 4 +- .../potterswheelbioschemas.jsonld | 4 +- data/power/powerbioschemas.jsonld | 4 +- .../powerexplorerbioschemas.jsonld | 4 +- data/powerfit/powerfitbioschemas.jsonld | 4 +- .../powergwasinteractionbioschemas.jsonld | 4 +- data/powergxe/powergxebioschemas.jsonld | 4 +- data/powertcr/powertcrbioschemas.jsonld | 4 +- data/poxo/poxobioschemas.jsonld | 4 +- data/ppa-pred/ppa-predbioschemas.jsonld | 4 +- data/ppb/ppbbioschemas.jsonld | 4 +- data/ppfold/ppfoldbioschemas.jsonld | 4 +- data/ppi/ppibioschemas.jsonld | 4 +- data/ppicompare/ppicomparebioschemas.jsonld | 4 +- data/ppicurator/ppicuratorbioschemas.jsonld | 4 +- data/ppiexp/ppiexpbioschemas.jsonld | 4 +- data/ppim/ppimbioschemas.jsonld | 4 +- data/ppinfer/ppinferbioschemas.jsonld | 4 +- data/ppipre/ppiprebioschemas.jsonld | 4 +- data/ppisearch/ppisearchbioschemas.jsonld | 4 +- data/ppistats/ppistatsbioschemas.jsonld | 4 +- data/ppisurv/ppisurvbioschemas.jsonld | 4 +- data/ppixpress/ppixpressbioschemas.jsonld | 4 +- data/ppms/ppmsbioschemas.jsonld | 4 +- .../pppbenchmarkbioschemas.jsonld | 14 +++--- data/pprint/pprintbioschemas.jsonld | 4 +- data/pps/ppsbioschemas.jsonld | 4 +- data/ppsc/ppscbioschemas.jsonld | 4 +- data/ppus/ppusbioschemas.jsonld | 4 +- data/ppv_npv/ppv_npvbioschemas.jsonld | 14 +++--- data/pqsfinder/pqsfinderbioschemas.jsonld | 6 +-- data/praline/pralinebioschemas.jsonld | 4 +- data/praline_2/praline_2bioschemas.jsonld | 8 +-- data/pram/prambioschemas.jsonld | 2 +- data/prank/prankbioschemas.jsonld | 4 +- data/prank_api/prank_apibioschemas.jsonld | 4 +- data/prankweb/prankwebbioschemas.jsonld | 24 ++++----- .../praptorx_propertybioschemas.jsonld | 2 +- data/pratt/prattbioschemas.jsonld | 8 +-- data/prbr/prbrbioschemas.jsonld | 4 +- data/prcbench/prcbenchbioschemas.jsonld | 10 ++-- data/prdos/prdosbioschemas.jsonld | 4 +- data/prebs/prebsbioschemas.jsonld | 20 ++++---- .../preciseprimerbioschemas.jsonld | 4 +- data/precog/precogbioschemas.jsonld | 4 +- data/pred-gpcr/pred-gpcrbioschemas.jsonld | 4 +- data/pred-signal/pred-signalbioschemas.jsonld | 4 +- data/pred-tat/pred-tatbioschemas.jsonld | 4 +- data/pred-tmbb/pred-tmbbbioschemas.jsonld | 4 +- data/pred-tmbb2/pred-tmbb2bioschemas.jsonld | 8 +-- data/preda/predabioschemas.jsonld | 4 +- data/predcsf/predcsfbioschemas.jsonld | 4 +- data/preddimer/preddimerbioschemas.jsonld | 4 +- data/predector/predectorbioschemas.jsonld | 2 +- data/predgpi/predgpibioschemas.jsonld | 6 +-- data/predhydroxy/predhydroxybioschemas.jsonld | 2 +- .../predictionetbioschemas.jsonld | 8 +-- .../predictivenetworksbioschemas.jsonld | 2 +- data/predictnls/predictnlsbioschemas.jsonld | 20 ++++---- data/predictpa/predictpabioschemas.jsonld | 4 +- .../predictproteinbioschemas.jsonld | 4 +- .../predictprotein_openbioschemas.jsonld | 6 +-- data/predictsnp/predictsnpbioschemas.jsonld | 20 ++++---- data/predictsnp2/predictsnp2bioschemas.jsonld | 22 ++++---- data/predikin/predikinbioschemas.jsonld | 4 +- data/preditor/preditorbioschemas.jsonld | 4 +- data/predrem/predrembioschemas.jsonld | 8 +-- data/predtm/predtmbioschemas.jsonld | 4 +- data/predus/predusbioschemas.jsonld | 4 +- data/predyflexy/predyflexybioschemas.jsonld | 4 +- data/preg/pregbioschemas.jsonld | 14 +++--- .../prelude_fuguebioschemas.jsonld | 4 +- data/premer-cg/premer-cgbioschemas.jsonld | 4 +- data/premeta/premetabioschemas.jsonld | 12 ++--- data/preopdb/preopdbbioschemas.jsonld | 4 +- data/prep_suite/prep_suitebioschemas.jsonld | 4 +- .../prepareannotationbioschemas.jsonld | 4 +- data/prephappy/prephappybioschemas.jsonld | 4 +- data/preppi/preppibioschemas.jsonld | 2 +- data/presartools/presartoolsbioschemas.jsonld | 4 +- data/preseq/preseqbioschemas.jsonld | 4 +- data/press/pressbioschemas.jsonld | 2 +- data/prettyplot/prettyplotbioschemas.jsonld | 18 +++---- .../prettyplot_ws_husarbioschemas.jsonld | 4 +- data/prettyseq/prettyseqbioschemas.jsonld | 10 ++-- data/prex/prexbioschemas.jsonld | 2 +- data/prgdb/prgdbbioschemas.jsonld | 4 +- .../priam_searchbioschemas.jsonld | 6 +-- data/price/pricebioschemas.jsonld | 4 +- data/pridb/pridbbioschemas.jsonld | 4 +- data/pride/pridebioschemas.jsonld | 4 +- .../pride_converterbioschemas.jsonld | 2 +- .../pride_toolsuitebioschemas.jsonld | 8 +-- data/prifi/prifibioschemas.jsonld | 4 +- data/primaclade/primacladebioschemas.jsonld | 4 +- data/primer/primerbioschemas.jsonld | 4 +- data/primer3/primer3bioschemas.jsonld | 4 +- data/primer3plus/primer3plusbioschemas.jsonld | 4 +- data/primerbank/primerbankbioschemas.jsonld | 4 +- .../primerdesign-mbioschemas.jsonld | 4 +- .../primerize-2dbioschemas.jsonld | 4 +- data/primerize/primerizebioschemas.jsonld | 2 +- .../primers4cladesbioschemas.jsonld | 4 +- .../primersearchbioschemas.jsonld | 12 ++--- .../primerselectbioschemas.jsonld | 4 +- data/primerseq/primerseqbioschemas.jsonld | 10 ++-- .../primerstationbioschemas.jsonld | 4 +- data/primersuite/primersuitebioschemas.jsonld | 8 +-- data/primerxl/primerxlbioschemas.jsonld | 4 +- data/primo/primobioschemas.jsonld | 8 +-- data/princces/princcesbioschemas.jsonld | 4 +- data/prince/princebioschemas.jsonld | 2 +- data/princess/princessbioschemas.jsonld | 8 +-- .../princeton_tigressbioschemas.jsonld | 4 +- data/prinseq/prinseqbioschemas.jsonld | 2 +- data/prints/printsbioschemas.jsonld | 4 +- .../printsextractbioschemas.jsonld | 18 +++---- data/priority/prioritybioschemas.jsonld | 4 +- data/prism-ppi/prism-ppibioschemas.jsonld | 4 +- data/prism_3/prism_3bioschemas.jsonld | 4 +- data/prismatic/prismaticbioschemas.jsonld | 8 +-- data/prize/prizebioschemas.jsonld | 8 +-- data/prmepred/prmepredbioschemas.jsonld | 4 +- data/prn/prnbioschemas.jsonld | 14 +++--- data/pro-bs/pro-bsbioschemas.jsonld | 4 +- data/pro-coffee/pro-coffeebioschemas.jsonld | 4 +- data/pro-maya/pro-mayabioschemas.jsonld | 4 +- data/pro/probioschemas.jsonld | 4 +- data/proabc/proabcbioschemas.jsonld | 4 +- data/probamr/probamrbioschemas.jsonld | 2 +- data/probcons/probconsbioschemas.jsonld | 4 +- .../probcons_ws_jabawsbioschemas.jsonld | 4 +- data/probe/probebioschemas.jsonld | 4 +- data/probelynx/probelynxbioschemas.jsonld | 4 +- data/probematch/probematchbioschemas.jsonld | 4 +- data/prober-chem/prober-chembioschemas.jsonld | 14 +++--- data/probias/probiasbioschemas.jsonld | 2 +- .../probis-ligandsbioschemas.jsonld | 2 +- data/probis/probisbioschemas.jsonld | 4 +- data/problm/problmbioschemas.jsonld | 4 +- data/probrna/probrnabioschemas.jsonld | 4 +- data/process/processbioschemas.jsonld | 8 +-- data/procheck/procheckbioschemas.jsonld | 4 +- data/procksi/procksibioschemas.jsonld | 4 +- data/proclass/proclassbioschemas.jsonld | 4 +- data/procoil/procoilbioschemas.jsonld | 16 +++--- data/procon/proconbioschemas.jsonld | 8 +-- data/procona/proconabioschemas.jsonld | 6 +-- data/prodepth/prodepthbioschemas.jsonld | 4 +- data/prodesign/prodesignbioschemas.jsonld | 2 +- data/prodge/prodgebioschemas.jsonld | 4 +- .../prodigy-crystalbioschemas.jsonld | 6 +-- data/prodigy-lig/prodigy-ligbioschemas.jsonld | 8 +-- data/prodigy/prodigybioschemas.jsonld | 2 +- data/prodom/prodombioschemas.jsonld | 4 +- .../prodomcg_evoscenbioschemas.jsonld | 4 +- .../prodomcg_treebioschemas.jsonld | 4 +- data/prodonet/prodonetbioschemas.jsonld | 4 +- data/prody/prodybioschemas.jsonld | 2 +- data/prof_sim/prof_simbioschemas.jsonld | 4 +- data/profacc/profaccbioschemas.jsonld | 10 ++-- data/profcom/profcombioschemas.jsonld | 2 +- data/profdisis/profdisisbioschemas.jsonld | 12 ++--- data/profeat/profeatbioschemas.jsonld | 28 +++++------ data/profed/profedbioschemas.jsonld | 4 +- data/profhtm/profhtmbioschemas.jsonld | 12 ++--- data/profia/profiabioschemas.jsonld | 2 +- .../profilescoredistbioschemas.jsonld | 4 +- data/profisis/profisisbioschemas.jsonld | 8 +-- data/profit/profitbioschemas.jsonld | 14 +++--- data/profound/profoundbioschemas.jsonld | 4 +- .../profppikernelbioschemas.jsonld | 4 +- data/profsec/profsecbioschemas.jsonld | 4 +- data/proftmb/proftmbbioschemas.jsonld | 26 +++++----- data/profunc/profuncbioschemas.jsonld | 8 +-- data/progenetix/progenetixbioschemas.jsonld | 2 +- data/progenomes/progenomesbioschemas.jsonld | 20 ++++---- data/progeny/progenybioschemas.jsonld | 18 +++---- data/proglycprot/proglycprotbioschemas.jsonld | 4 +- data/prognoscan/prognoscanbioschemas.jsonld | 4 +- data/prohits-viz/prohits-vizbioschemas.jsonld | 8 +-- data/proinflam/proinflambioschemas.jsonld | 4 +- data/projector_2/projector_2bioschemas.jsonld | 4 +- .../prokaryote-rnaseqbioschemas.jsonld | 8 +-- data/prokka/prokkabioschemas.jsonld | 12 ++--- data/prokware/prokwarebioschemas.jsonld | 4 +- data/proloc-go/proloc-gobioschemas.jsonld | 4 +- data/proloc/prolocbioschemas.jsonld | 20 ++++---- data/prolocgui/prolocguibioschemas.jsonld | 6 +-- data/prom/prombioschemas.jsonld | 4 +- data/promals3d/promals3dbioschemas.jsonld | 4 +- data/promateus/promateusbioschemas.jsonld | 4 +- data/promaya/promayabioschemas.jsonld | 4 +- data/promex/promexbioschemas.jsonld | 2 +- data/promh/promhbioschemas.jsonld | 4 +- data/promiscuous/promiscuousbioschemas.jsonld | 4 +- data/promise/promisebioschemas.jsonld | 12 ++--- data/promk/promkbioschemas.jsonld | 4 +- data/promo/promobioschemas.jsonld | 2 +- data/promoser/promoserbioschemas.jsonld | 4 +- data/promost/promostbioschemas.jsonld | 4 +- data/promoter/promoterbioschemas.jsonld | 2 +- data/promotercad/promotercadbioschemas.jsonld | 4 +- .../promoterwisebioschemas.jsonld | 4 +- data/prompredict/prompredictbioschemas.jsonld | 4 +- data/prompt/promptbioschemas.jsonld | 4 +- data/promzea/promzeabioschemas.jsonld | 20 ++++---- data/proovread/proovreadbioschemas.jsonld | 4 +- data/prop/propbioschemas.jsonld | 8 +-- data/propas/propasbioschemas.jsonld | 4 +- data/proper/properbioschemas.jsonld | 6 +-- .../prophage_hunterbioschemas.jsonld | 12 ++--- data/prophecy/prophecybioschemas.jsonld | 4 +- data/prophet/prophetbioschemas.jsonld | 8 +-- data/propr/proprbioschemas.jsonld | 4 +- data/propred/propredbioschemas.jsonld | 4 +- data/propred1/propred1bioschemas.jsonld | 4 +- data/props/propsbioschemas.jsonld | 4 +- data/propsearch/propsearchbioschemas.jsonld | 2 +- data/proq2/proq2bioschemas.jsonld | 4 +- data/prorate/proratebioschemas.jsonld | 4 +- data/prorepeat/prorepeatbioschemas.jsonld | 4 +- data/prosa-web/prosa-webbioschemas.jsonld | 2 +- data/prosampler/prosamplerbioschemas.jsonld | 4 +- data/prosat/prosatbioschemas.jsonld | 4 +- data/prosat2/prosat2bioschemas.jsonld | 2 +- data/proseq/proseqbioschemas.jsonld | 4 +- data/prosess/prosessbioschemas.jsonld | 18 +++---- data/prosextract/prosextractbioschemas.jsonld | 10 ++-- .../prosight_ptmbioschemas.jsonld | 4 +- ...rosight_ptm_ion_predictorbioschemas.jsonld | 4 +- data/prosit/prositbioschemas.jsonld | 4 +- data/prosite/prositebioschemas.jsonld | 12 ++--- .../prosite_scan_ebibioschemas.jsonld | 8 +-- data/prosmos/prosmosbioschemas.jsonld | 4 +- data/prosnex/prosnexbioschemas.jsonld | 22 ++++---- data/prosom/prosombioschemas.jsonld | 2 +- data/prospect/prospectbioschemas.jsonld | 4 +- data/prospectr/prospectrbioschemas.jsonld | 4 +- data/prosplicer/prosplicerbioschemas.jsonld | 4 +- data/prostar/prostarbioschemas.jsonld | 8 +-- data/prostrip/prostripbioschemas.jsonld | 4 +- data/prot-spam/prot-spambioschemas.jsonld | 12 ++--- data/prot2d/prot2dbioschemas.jsonld | 6 +-- data/prot_pi/prot_pibioschemas.jsonld | 2 +- data/protchemsi/protchemsibioschemas.jsonld | 4 +- data/protdcal/protdcalbioschemas.jsonld | 16 +++--- data/protea/proteabioschemas.jsonld | 8 +-- data/protedna/protednabioschemas.jsonld | 4 +- data/protege/protegebioschemas.jsonld | 4 +- data/protegen/protegenbioschemas.jsonld | 4 +- .../protein_cavity_searchbioschemas.jsonld | 4 +- .../protein_contacts_atlasbioschemas.jsonld | 2 +- ...otein_disorder_predictorsbioschemas.jsonld | 4 +- .../protein_model_portalbioschemas.jsonld | 8 +-- .../protein_peeling_3_dbioschemas.jsonld | 4 +- .../protein_sequence_logosbioschemas.jsonld | 4 +- .../protein_solubilitybioschemas.jsonld | 8 +-- .../protein_spotlightbioschemas.jsonld | 2 +- data/proteinart/proteinartbioschemas.jsonld | 2 +- .../proteinatlasbioschemas.jsonld | 4 +- data/proteindbs/proteindbsbioschemas.jsonld | 4 +- .../proteindecisionbioschemas.jsonld | 4 +- data/proteinguru/proteingurubioschemas.jsonld | 4 +- .../proteinhistorianbioschemas.jsonld | 16 +++--- .../proteininferbioschemas.jsonld | 4 +- .../proteinprofilesbioschemas.jsonld | 4 +- .../proteinprospectorbioschemas.jsonld | 4 +- .../proteinspectorbioschemas.jsonld | 4 +- .../proteinsplusbioschemas.jsonld | 4 +- data/protemot/protemotbioschemas.jsonld | 4 +- data/proteo/proteobioschemas.jsonld | 8 +-- .../proteoformerbioschemas.jsonld | 16 +++--- data/proteomatic/proteomaticbioschemas.jsonld | 4 +- data/proteome-pi/proteome-pibioschemas.jsonld | 12 ++--- .../proteomedigestsimbioschemas.jsonld | 4 +- .../proteometoolsbioschemas.jsonld | 4 +- .../proteomexchangebioschemas.jsonld | 4 +- ...oteomicsannotationhubdatabioschemas.jsonld | 2 +- .../proteomicsdbbioschemas.jsonld | 6 +-- .../proteomirexpressbioschemas.jsonld | 4 +- data/proteopedia/proteopediabioschemas.jsonld | 4 +- data/proteoqc/proteoqcbioschemas.jsonld | 4 +- data/proteore/proteorebioschemas.jsonld | 8 +-- data/proteosafe/proteosafebioschemas.jsonld | 2 +- data/proteosign/proteosignbioschemas.jsonld | 2 +- .../proteowizardbioschemas.jsonld | 4 +- .../proteoworkerbioschemas.jsonld | 12 ++--- data/proteus/proteusbioschemas.jsonld | 4 +- data/proteus2/proteus2bioschemas.jsonld | 4 +- data/protfun/protfunbioschemas.jsonld | 4 +- .../protgenericsbioschemas.jsonld | 8 +-- data/proticdb/proticdbbioschemas.jsonld | 4 +- data/protident/protidentbioschemas.jsonld | 4 +- data/protinfo/protinfobioschemas.jsonld | 4 +- data/protk/protkbioschemas.jsonld | 4 +- data/protobug/protobugbioschemas.jsonld | 12 ++--- .../protocolnavigatorbioschemas.jsonld | 4 +- data/protomap/protomapbioschemas.jsonld | 4 +- data/protomata/protomatabioschemas.jsonld | 2 +- data/protoss/protossbioschemas.jsonld | 4 +- data/protparam/protparambioschemas.jsonld | 2 +- data/protphylo/protphylobioschemas.jsonld | 16 +++--- data/protpy/protpybioschemas.jsonld | 4 +- data/protsav/protsavbioschemas.jsonld | 4 +- data/protscale/protscalebioschemas.jsonld | 4 +- data/protsweep/protsweepbioschemas.jsonld | 2 +- data/protter/protterbioschemas.jsonld | 4 +- data/prottest/prottestbioschemas.jsonld | 8 +-- data/prottrace/prottracebioschemas.jsonld | 2 +- data/provean/proveanbioschemas.jsonld | 4 +- data/proxl/proxlbioschemas.jsonld | 22 ++++---- data/prs/prsbioschemas.jsonld | 30 +++++------ data/prsice/prsicebioschemas.jsonld | 2 +- data/ps-plant/ps-plantbioschemas.jsonld | 12 ++--- data/ps2-v3/ps2-v3bioschemas.jsonld | 4 +- data/psa/psabioschemas.jsonld | 4 +- data/psafe/psafebioschemas.jsonld | 4 +- data/psamm/psammbioschemas.jsonld | 4 +- data/psaweb/psawebbioschemas.jsonld | 4 +- data/psbvb/psbvbbioschemas.jsonld | 12 ++--- data/pscan/pscanbioschemas.jsonld | 12 ++--- data/pscanchip/pscanchipbioschemas.jsonld | 8 +-- data/pscp/pscpbioschemas.jsonld | 4 +- .../pse-analysisbioschemas.jsonld | 4 +- data/pse-in-one/pse-in-onebioschemas.jsonld | 16 +++--- data/pseaac/pseaacbioschemas.jsonld | 4 +- data/pseknc/psekncbioschemas.jsonld | 4 +- ...ultistriata_genome_portalbioschemas.jsonld | 8 +-- data/pseudocap/pseudocapbioschemas.jsonld | 14 +++--- data/pseudomap/pseudomapbioschemas.jsonld | 4 +- ...seudomonas_genome_projectbioschemas.jsonld | 4 +- .../pseudoviewerbioschemas.jsonld | 4 +- data/psi-blast/psi-blastbioschemas.jsonld | 4 +- .../psi-blast_restbioschemas.jsonld | 4 +- .../psi-mi_validatorbioschemas.jsonld | 4 +- data/psi-search/psi-searchbioschemas.jsonld | 4 +- .../psi-search_restbioschemas.jsonld | 4 +- data/psi-sigma/psi-sigmabioschemas.jsonld | 4 +- data/psi/psibioschemas.jsonld | 4 +- data/psichomics/psichomicsbioschemas.jsonld | 8 +-- data/psicquic/psicquicbioschemas.jsonld | 4 +- .../psicquic_viewbioschemas.jsonld | 4 +- data/psionplus/psionplusbioschemas.jsonld | 4 +- data/psiphi/psiphibioschemas.jsonld | 10 ++-- data/psipred/psipredbioschemas.jsonld | 4 +- data/psiquic_dip/psiquic_dipbioschemas.jsonld | 4 +- data/pslpred/pslpredbioschemas.jsonld | 4 +- data/psoda/psodabioschemas.jsonld | 4 +- data/psortb/psortbbioschemas.jsonld | 4 +- data/psortdb/psortdbbioschemas.jsonld | 4 +- data/psrn/psrnbioschemas.jsonld | 16 +++--- data/psrnatarget/psrnatargetbioschemas.jsonld | 4 +- data/psrrr/psrrrbioschemas.jsonld | 4 +- data/pssa/pssabioschemas.jsonld | 2 +- data/pssalib/pssalibbioschemas.jsonld | 4 +- data/pssmhcpan/pssmhcpanbioschemas.jsonld | 8 +-- data/pssrdb/pssrdbbioschemas.jsonld | 4 +- data/pssrnaminer/pssrnaminerbioschemas.jsonld | 4 +- .../pstdistancerbioschemas.jsonld | 4 +- data/pstr_finder/pstr_finderbioschemas.jsonld | 4 +- data/psuc-lys/psuc-lysbioschemas.jsonld | 4 +- data/psumo-cd/psumo-cdbioschemas.jsonld | 4 +- data/psvs/psvsbioschemas.jsonld | 4 +- data/psychoprot/psychoprotbioschemas.jsonld | 16 +++--- data/psygenet2r/psygenet2rbioschemas.jsonld | 4 +- data/pteros/pterosbioschemas.jsonld | 4 +- data/ptgl/ptglbioschemas.jsonld | 4 +- data/pthgrn/pthgrnbioschemas.jsonld | 4 +- data/ptmclust/ptmclustbioschemas.jsonld | 4 +- data/ptmphinder/ptmphinderbioschemas.jsonld | 14 +++--- data/ptmprophet/ptmprophetbioschemas.jsonld | 2 +- data/ptrcombiner/ptrcombinerbioschemas.jsonld | 4 +- data/ptrimmer/ptrimmerbioschemas.jsonld | 24 ++++----- data/ptrstalker/ptrstalkerbioschemas.jsonld | 4 +- data/pubchem/pubchembioschemas.jsonld | 4 +- data/pubgene/pubgenebioschemas.jsonld | 4 +- data/pubmed/pubmedbioschemas.jsonld | 4 +- .../pubmed2ensemblbioschemas.jsonld | 4 +- .../pubmed_centralbioschemas.jsonld | 4 +- data/pubmeth/pubmethbioschemas.jsonld | 4 +- data/pubrunner/pubrunnerbioschemas.jsonld | 4 +- data/pubserver/pubserverbioschemas.jsonld | 4 +- data/pubtator/pubtatorbioschemas.jsonld | 4 +- .../pubtator_centralbioschemas.jsonld | 16 +++--- data/pubterm/pubtermbioschemas.jsonld | 6 +-- data/pudge/pudgebioschemas.jsonld | 4 +- data/pug/pugbioschemas.jsonld | 4 +- data/pulse-phage/pulse-phagebioschemas.jsonld | 4 +- data/pulser/pulserbioschemas.jsonld | 8 +-- data/puma/pumabioschemas.jsonld | 26 +++++----- data/pure/purebioschemas.jsonld | 4 +- data/purecn/purecnbioschemas.jsonld | 26 +++++----- data/putracer/putracerbioschemas.jsonld | 4 +- data/pvac/pvacbioschemas.jsonld | 8 +-- data/pvca/pvcabioschemas.jsonld | 8 +-- data/pview/pviewbioschemas.jsonld | 2 +- data/pviz-visual/pviz-visualbioschemas.jsonld | 6 +-- data/pviz/pvizbioschemas.jsonld | 4 +- data/pvs/pvsbioschemas.jsonld | 4 +- data/pwmenrich/pwmenrichbioschemas.jsonld | 4 +- data/pwmscan/pwmscanbioschemas.jsonld | 4 +- data/pwomics/pwomicsbioschemas.jsonld | 4 +- data/pwrewas/pwrewasbioschemas.jsonld | 4 +- data/pximage/pximagebioschemas.jsonld | 4 +- data/pxsim/pxsimbioschemas.jsonld | 2 +- data/py-em/py-embioschemas.jsonld | 4 +- data/pyampli/pyamplibioschemas.jsonld | 4 +- data/pybedtools/pybedtoolsbioschemas.jsonld | 4 +- data/pybel/pybelbioschemas.jsonld | 2 +- data/pybiomed/pybiomedbioschemas.jsonld | 4 +- data/pybsaseq/pybsaseqbioschemas.jsonld | 4 +- data/pycellbase/pycellbasebioschemas.jsonld | 14 +++--- data/pycogent/pycogentbioschemas.jsonld | 4 +- data/pydna/pydnabioschemas.jsonld | 4 +- data/pydocksaxs/pydocksaxsbioschemas.jsonld | 34 ++++++------- data/pydockweb/pydockwebbioschemas.jsonld | 8 +-- data/pydstool/pydstoolbioschemas.jsonld | 16 +++--- data/pyfaidx/pyfaidxbioschemas.jsonld | 4 +- data/pyfasta/pyfastabioschemas.jsonld | 8 +-- data/pyfolding/pyfoldingbioschemas.jsonld | 6 +-- data/pyfrap/pyfrapbioschemas.jsonld | 4 +- data/pygold/pygoldbioschemas.jsonld | 4 +- data/pyhla/pyhlabioschemas.jsonld | 10 ++-- data/pylda/pyldabioschemas.jsonld | 4 +- data/pyldm/pyldmbioschemas.jsonld | 4 +- data/pyloh/pylohbioschemas.jsonld | 2 +- data/pymbar/pymbarbioschemas.jsonld | 10 ++-- data/pymdsetup/pymdsetupbioschemas.jsonld | 4 +- data/pymod/pymodbioschemas.jsonld | 4 +- data/pymol/pymolbioschemas.jsonld | 2 +- data/pyms/pymsbioschemas.jsonld | 4 +- data/pymsxml/pymsxmlbioschemas.jsonld | 4 +- data/pymut/pymutbioschemas.jsonld | 10 ++-- data/pymzml/pymzmlbioschemas.jsonld | 4 +- data/pypanda/pypandabioschemas.jsonld | 4 +- data/pypdb/pypdbbioschemas.jsonld | 2 +- data/pyplif/pyplifbioschemas.jsonld | 4 +- data/pyqms/pyqmsbioschemas.jsonld | 4 +- data/pyrad/pyradbioschemas.jsonld | 4 +- data/pyrosetta/pyrosettabioschemas.jsonld | 2 +- data/pyrotrimmer/pyrotrimmerbioschemas.jsonld | 2 +- data/pysam/pysambioschemas.jsonld | 2 +- data/pysamstats/pysamstatsbioschemas.jsonld | 4 +- .../pyscestoolboxbioschemas.jsonld | 4 +- data/pyseer/pyseerbioschemas.jsonld | 4 +- data/pysradb/pysradbbioschemas.jsonld | 22 ++++---- data/pytarg/pytargbioschemas.jsonld | 4 +- data/pyteomics/pyteomicsbioschemas.jsonld | 2 +- data/pytfa/pytfabioschemas.jsonld | 2 +- .../python_video_annotatorbioschemas.jsonld | 4 +- data/pyviko/pyvikobioschemas.jsonld | 8 +-- data/pyvolve/pyvolvebioschemas.jsonld | 4 +- data/pywater/pywaterbioschemas.jsonld | 8 +-- data/q-hiu/q-hiubioschemas.jsonld | 4 +- data/q-nexus/q-nexusbioschemas.jsonld | 4 +- .../q2_itsxpressbioschemas.jsonld | 4 +- data/q2lm/q2lmbioschemas.jsonld | 8 +-- data/q4srm/q4srmbioschemas.jsonld | 8 +-- .../qa-recombineitbioschemas.jsonld | 4 +- data/qalma/qalmabioschemas.jsonld | 4 +- data/qarip/qaripbioschemas.jsonld | 4 +- data/qbic-pred/qbic-predbioschemas.jsonld | 20 ++++---- data/qbioimages/qbioimagesbioschemas.jsonld | 8 +-- data/qcewas/qcewasbioschemas.jsonld | 4 +- data/qcmap/qcmapbioschemas.jsonld | 2 +- data/qcmetrics/qcmetricsbioschemas.jsonld | 2 +- data/qcut/qcutbioschemas.jsonld | 4 +- data/qdnaseq/qdnaseqbioschemas.jsonld | 16 +++--- data/qfam/qfambioschemas.jsonld | 2 +- data/qgene/qgenebioschemas.jsonld | 4 +- data/qgrid/qgridbioschemas.jsonld | 4 +- .../qgrs-h_predictorbioschemas.jsonld | 4 +- data/qgrs_mapper/qgrs_mapperbioschemas.jsonld | 6 +-- data/qhot/qhotbioschemas.jsonld | 12 ++--- .../qmrlfs-finderbioschemas.jsonld | 18 +++---- data/qmsat/qmsatbioschemas.jsonld | 4 +- data/qnet/qnetbioschemas.jsonld | 4 +- data/qnr/qnrbioschemas.jsonld | 4 +- data/qoma/qomabioschemas.jsonld | 4 +- data/qpcrnorm/qpcrnormbioschemas.jsonld | 4 +- data/qpgraph/qpgraphbioschemas.jsonld | 30 +++++------ data/qq-snv/qq-snvbioschemas.jsonld | 8 +-- data/qrcme/qrcmebioschemas.jsonld | 8 +-- data/qresearch/qresearchbioschemas.jsonld | 4 +- data/qridge/qridgebioschemas.jsonld | 4 +- data/qrqc/qrqcbioschemas.jsonld | 4 +- data/qrtdesigner/qrtdesignerbioschemas.jsonld | 4 +- data/qsar-co/qsar-cobioschemas.jsonld | 4 +- data/qsbio/qsbiobioschemas.jsonld | 4 +- data/qscop_blast/qscop_blastbioschemas.jsonld | 2 +- data/qsea/qseabioschemas.jsonld | 6 +-- data/qsurface/qsurfacebioschemas.jsonld | 4 +- data/qtl-all/qtl-allbioschemas.jsonld | 4 +- data/qtl2pleio/qtl2pleiobioschemas.jsonld | 16 +++--- data/qtlnetwork/qtlnetworkbioschemas.jsonld | 4 +- data/qtlpoly/qtlpolybioschemas.jsonld | 2 +- data/qtorch/qtorchbioschemas.jsonld | 12 ++--- data/quacrs/quacrsbioschemas.jsonld | 4 +- data/quadfinder/quadfinderbioschemas.jsonld | 4 +- data/quadgt/quadgtbioschemas.jsonld | 2 +- data/quadruplex/quadruplexbioschemas.jsonld | 4 +- data/qualifier/qualifierbioschemas.jsonld | 4 +- data/qualimap/qualimapbioschemas.jsonld | 4 +- data/quality/qualitybioschemas.jsonld | 2 +- .../quality_assessmentbioschemas.jsonld | 2 +- .../qualitysnpngbioschemas.jsonld | 4 +- data/qualtofastq/qualtofastqbioschemas.jsonld | 4 +- data/quantgenius/quantgeniusbioschemas.jsonld | 14 +++--- data/quantifly/quantiflybioschemas.jsonld | 4 +- .../quantilebootstrapbioschemas.jsonld | 2 +- data/quantiprot/quantiprotbioschemas.jsonld | 6 +-- data/quantisnp/quantisnpbioschemas.jsonld | 4 +- data/quantro/quantrobioschemas.jsonld | 18 +++---- data/quantsmooth/quantsmoothbioschemas.jsonld | 4 +- data/quantum/quantumbioschemas.jsonld | 4 +- data/quantworm/quantwormbioschemas.jsonld | 8 +-- data/quark/quarkbioschemas.jsonld | 4 +- data/quartpac/quartpacbioschemas.jsonld | 8 +-- .../quasimotifinderbioschemas.jsonld | 4 +- data/quasr/quasrbioschemas.jsonld | 34 ++++++------- data/quassi/quassibioschemas.jsonld | 4 +- data/quast/quastbioschemas.jsonld | 4 +- .../quaternaryprodbioschemas.jsonld | 12 ++--- data/qubic/qubicbioschemas.jsonld | 4 +- data/qubils-mas/qubils-masbioschemas.jsonld | 12 ++--- data/queryor/queryorbioschemas.jsonld | 2 +- data/quetal/quetalbioschemas.jsonld | 4 +- data/quetzal/quetzalbioschemas.jsonld | 2 +- data/quickgo/quickgobioschemas.jsonld | 4 +- data/quicknii/quickniibioschemas.jsonld | 14 +++--- data/quin/quinbioschemas.jsonld | 10 ++-- data/quip/quipbioschemas.jsonld | 4 +- data/quokka/quokkabioschemas.jsonld | 8 +-- data/qupath/qupathbioschemas.jsonld | 4 +- data/qupe/qupebioschemas.jsonld | 6 +-- data/qusage/qusagebioschemas.jsonld | 18 +++---- data/qvalue/qvaluebioschemas.jsonld | 8 +-- data/qvz/qvzbioschemas.jsonld | 4 +- .../r-cloud_workbenchbioschemas.jsonld | 4 +- data/r-coffee/r-coffeebioschemas.jsonld | 4 +- data/r-qtl/r-qtlbioschemas.jsonld | 10 ++-- data/r/rbioschemas.jsonld | 8 +-- data/r2_platform/r2_platformbioschemas.jsonld | 2 +- data/r2dgc/r2dgcbioschemas.jsonld | 4 +- data/r3cpet/r3cpetbioschemas.jsonld | 30 +++++------ data/r3d-2-msa/r3d-2-msabioschemas.jsonld | 4 +- data/r3d-blast/r3d-blastbioschemas.jsonld | 4 +- data/r3d-blast2/r3d-blast2bioschemas.jsonld | 4 +- .../r453plus1toolboxbioschemas.jsonld | 10 ++-- data/r4rna/r4rnabioschemas.jsonld | 22 ++++---- .../r_cloud_workbenchbioschemas.jsonld | 4 +- data/r_for_cdna/r_for_cdnabioschemas.jsonld | 4 +- data/r_qtl2/r_qtl2bioschemas.jsonld | 12 ++--- data/r_spider/r_spiderbioschemas.jsonld | 4 +- data/rabhit/rabhitbioschemas.jsonld | 4 +- data/rabit/rabitbioschemas.jsonld | 4 +- data/rac/racbioschemas.jsonld | 2 +- data/racipe/racipebioschemas.jsonld | 12 ++--- data/radaa/radaabioschemas.jsonld | 4 +- data/radar/radarbioschemas.jsonld | 4 +- data/raedb/raedbbioschemas.jsonld | 12 ++--- data/rafsil/rafsilbioschemas.jsonld | 16 +++--- data/ragout/ragoutbioschemas.jsonld | 4 +- data/raid/raidbioschemas.jsonld | 12 ++--- data/raida/raidabioschemas.jsonld | 4 +- data/rain/rainbioschemas.jsonld | 14 +++--- data/rainbio/rainbiobioschemas.jsonld | 12 ++--- data/rama/ramabioschemas.jsonld | 8 +-- data/rambo-k/rambo-kbioschemas.jsonld | 4 +- data/ramedis/ramedisbioschemas.jsonld | 6 +-- data/ramigo/ramigobioschemas.jsonld | 4 +- data/ramona/ramonabioschemas.jsonld | 4 +- data/ramp/rampbioschemas.jsonld | 16 +++--- data/ranacapa/ranacapabioschemas.jsonld | 16 +++--- data/randfold/randfoldbioschemas.jsonld | 4 +- .../randomwalkrestartmhbioschemas.jsonld | 4 +- data/randpack/randpackbioschemas.jsonld | 8 +-- .../rankoptimizerbioschemas.jsonld | 2 +- data/rankpep/rankpepbioschemas.jsonld | 4 +- data/rankprod/rankprodbioschemas.jsonld | 8 +-- data/ranks/ranksbioschemas.jsonld | 4 +- data/rap/rapbioschemas.jsonld | 4 +- data/raphael/raphaelbioschemas.jsonld | 4 +- data/rapid/rapidbioschemas.jsonld | 4 +- data/rapidgsea/rapidgseabioschemas.jsonld | 16 +++--- data/rapidnj/rapidnjbioschemas.jsonld | 4 +- data/rapido/rapidobioschemas.jsonld | 4 +- data/rapidrmsd/rapidrmsdbioschemas.jsonld | 4 +- data/rapier/rapierbioschemas.jsonld | 4 +- data/rapmap/rapmapbioschemas.jsonld | 12 ++--- data/rapsearch/rapsearchbioschemas.jsonld | 4 +- data/raptr-sv/raptr-svbioschemas.jsonld | 2 +- data/raremetal/raremetalbioschemas.jsonld | 4 +- .../rarevariantvisbioschemas.jsonld | 4 +- data/rariant/rariantbioschemas.jsonld | 4 +- data/rasmol/rasmolbioschemas.jsonld | 4 +- .../rasmot-3d_probioschemas.jsonld | 4 +- data/rasp/raspbioschemas.jsonld | 4 +- data/rasqual/rasqualbioschemas.jsonld | 4 +- data/rass/rassbioschemas.jsonld | 4 +- data/rast/rastbioschemas.jsonld | 2 +- .../rasta-bacteriabioschemas.jsonld | 8 +-- data/raster3d/raster3dbioschemas.jsonld | 4 +- data/ratcave/ratcavebioschemas.jsonld | 2 +- data/ratrav/ratravbioschemas.jsonld | 2 +- data/ravages/ravagesbioschemas.jsonld | 4 +- .../raven_toolboxbioschemas.jsonld | 28 +++++------ data/raw2mzdb/raw2mzdbbioschemas.jsonld | 8 +-- data/rawtools/rawtoolsbioschemas.jsonld | 6 +-- data/raxml-ng/raxml-ngbioschemas.jsonld | 8 +-- data/raxml/raxmlbioschemas.jsonld | 2 +- data/ray/raybioschemas.jsonld | 14 +++--- data/razers/razersbioschemas.jsonld | 4 +- data/rbamtools/rbamtoolsbioschemas.jsonld | 4 +- data/rbcbook1/rbcbook1bioschemas.jsonld | 2 +- data/rbgl/rbglbioschemas.jsonld | 2 +- data/rbioinf/rbioinfbioschemas.jsonld | 8 +-- data/rbiomirgs/rbiomirgsbioschemas.jsonld | 4 +- .../rbiopaxparserbioschemas.jsonld | 8 +-- data/rbm/rbmbioschemas.jsonld | 4 +- data/rbo_aleph/rbo_alephbioschemas.jsonld | 2 +- data/rboanalyzer/rboanalyzerbioschemas.jsonld | 8 +-- data/rbowtie/rbowtiebioschemas.jsonld | 4 +- data/rbowtie2/rbowtie2bioschemas.jsonld | 4 +- data/rbp-maps/rbp-mapsbioschemas.jsonld | 12 ++--- data/rbpdb/rbpdbbioschemas.jsonld | 4 +- data/rbrothers/rbrothersbioschemas.jsonld | 4 +- data/rbscore/rbscorebioschemas.jsonld | 4 +- data/rbsurv/rbsurvbioschemas.jsonld | 4 +- data/rca/rcabioschemas.jsonld | 4 +- .../rcade-recognitionbioschemas.jsonld | 4 +- data/rcade/rcadebioschemas.jsonld | 2 +- data/rcare/rcarebioschemas.jsonld | 4 +- data/rcas/rcasbioschemas.jsonld | 28 +++++------ data/rcasc/rcascbioschemas.jsonld | 4 +- data/rcaspar/rcasparbioschemas.jsonld | 8 +-- data/rcellminer/rcellminerbioschemas.jsonld | 32 ++++++------ data/rcgh/rcghbioschemas.jsonld | 2 +- data/rchemcpp/rchemcppbioschemas.jsonld | 4 +- data/rchyoptimyx/rchyoptimyxbioschemas.jsonld | 8 +-- data/rcistarget/rcistargetbioschemas.jsonld | 2 +- data/rclick/rclickbioschemas.jsonld | 2 +- data/rcorrector/rcorrectorbioschemas.jsonld | 4 +- data/rcount/rcountbioschemas.jsonld | 4 +- data/rcpi/rcpibioschemas.jsonld | 16 +++--- data/rcy3/rcy3bioschemas.jsonld | 8 +-- data/rcyjs/rcyjsbioschemas.jsonld | 2 +- data/rcytoscape/rcytoscapebioschemas.jsonld | 14 +++--- data/rd-connect/rd-connectbioschemas.jsonld | 10 ++-- .../rd-connect_platformbioschemas.jsonld | 14 +++--- ...-connect_sample_cataloguebioschemas.jsonld | 12 ++--- .../rdavidwebservicebioschemas.jsonld | 4 +- data/rdfio/rdfiobioschemas.jsonld | 12 ++--- data/rdfscape/rdfscapebioschemas.jsonld | 4 +- data/rdiff/rdiffbioschemas.jsonld | 4 +- data/rdisop/rdisopbioschemas.jsonld | 6 +-- data/rdml/rdmlbioschemas.jsonld | 4 +- data/rdp/rdpbioschemas.jsonld | 4 +- ...p_pyrosequencing_pipelinebioschemas.jsonld | 4 +- data/rdrf/rdrfbioschemas.jsonld | 22 ++++---- data/rdrtoolbox/rdrtoolboxbioschemas.jsonld | 4 +- data/rdt/rdtbioschemas.jsonld | 6 +-- data/rdxplorer/rdxplorerbioschemas.jsonld | 8 +-- data/re-music/re-musicbioschemas.jsonld | 4 +- data/rea/reabioschemas.jsonld | 4 +- .../reactionflowbioschemas.jsonld | 4 +- .../reactome_graph_databasebioschemas.jsonld | 4 +- ...ome_small_molecule_searchbioschemas.jsonld | 8 +-- .../reactomefivizbioschemas.jsonld | 22 ++++---- data/reactomepa/reactomepabioschemas.jsonld | 12 ++--- data/reactpred/reactpredbioschemas.jsonld | 4 +- data/readat/readatbioschemas.jsonld | 20 ++++---- data/readdy/readdybioschemas.jsonld | 8 +-- data/reademption/reademptionbioschemas.jsonld | 4 +- .../readfastafilebioschemas.jsonld | 4 +- data/readqpcr/readqpcrbioschemas.jsonld | 18 +++---- data/reads2type/reads2typebioschemas.jsonld | 4 +- data/readscan/readscanbioschemas.jsonld | 4 +- data/readseq/readseqbioschemas.jsonld | 12 ++--- data/readtools/readtoolsbioschemas.jsonld | 4 +- data/readxplorer/readxplorerbioschemas.jsonld | 10 ++-- data/realphy/realphybioschemas.jsonld | 4 +- data/reb/rebbioschemas.jsonld | 8 +-- data/rebacca/rebaccabioschemas.jsonld | 2 +- data/rebase/rebasebioschemas.jsonld | 4 +- .../rebaseextractbioschemas.jsonld | 18 +++---- data/recal2/recal2bioschemas.jsonld | 4 +- .../recentrifugebioschemas.jsonld | 18 +++---- data/recirc/recircbioschemas.jsonld | 4 +- data/recode/recodebioschemas.jsonld | 4 +- data/recoder/recoderbioschemas.jsonld | 10 ++-- data/recoittv/recoittvbioschemas.jsonld | 4 +- data/recon/reconbioschemas.jsonld | 4 +- .../recount_bioconductorbioschemas.jsonld | 2 +- data/recoup/recoupbioschemas.jsonld | 4 +- data/recovery/recoverybioschemas.jsonld | 4 +- data/recphyloxml/recphyloxmlbioschemas.jsonld | 4 +- data/red-ml/red-mlbioschemas.jsonld | 4 +- data/red/redbioschemas.jsonld | 8 +-- data/redata/redatabioschemas.jsonld | 16 +++--- data/redcap/redcapbioschemas.jsonld | 4 +- data/redemption/redemptionbioschemas.jsonld | 4 +- data/reder/rederbioschemas.jsonld | 16 +++--- data/redfly/redflybioschemas.jsonld | 4 +- data/redhom/redhombioschemas.jsonld | 4 +- data/redhorse/redhorsebioschemas.jsonld | 18 +++---- data/redidb/redidbbioschemas.jsonld | 4 +- data/rediportal/rediportalbioschemas.jsonld | 22 ++++---- data/reditools/reditoolsbioschemas.jsonld | 4 +- data/redoxmech/redoxmechbioschemas.jsonld | 4 +- data/refbool/refboolbioschemas.jsonld | 4 +- ...ence_panel_reconstructionbioschemas.jsonld | 2 +- data/refernment/refernmentbioschemas.jsonld | 6 +-- data/refinehmm/refinehmmbioschemas.jsonld | 4 +- data/refnet/refnetbioschemas.jsonld | 4 +- data/refold/refoldbioschemas.jsonld | 12 ++--- .../reformat_fastqbioschemas.jsonld | 2 +- ...ormat_snpeff_for_syntviewbioschemas.jsonld | 2 +- data/refplus/refplusbioschemas.jsonld | 4 +- data/refseq/refseqbioschemas.jsonld | 4 +- data/refseqget/refseqgetbioschemas.jsonld | 12 ++--- .../regbenchmarkbioschemas.jsonld | 4 +- data/regent/regentbioschemas.jsonld | 4 +- data/regeo/regeobioschemas.jsonld | 18 +++---- .../regionalhapmapextractorbioschemas.jsonld | 4 +- data/regionalp/regionalpbioschemas.jsonld | 8 +-- data/regioner/regionerbioschemas.jsonld | 6 +-- .../regionreportbioschemas.jsonld | 12 ++--- data/regprecise/regprecisebioschemas.jsonld | 4 +- .../regresshaplobioschemas.jsonld | 4 +- data/regrna/regrnabioschemas.jsonld | 4 +- data/regscan/regscanbioschemas.jsonld | 8 +-- data/regshape/regshapebioschemas.jsonld | 4 +- data/regsplice/regsplicebioschemas.jsonld | 8 +-- .../regulationspotterbioschemas.jsonld | 4 +- data/regulondb/regulondbbioschemas.jsonld | 4 +- data/rehh/rehhbioschemas.jsonld | 4 +- data/rehr/rehrbioschemas.jsonld | 4 +- data/reinvent/reinventbioschemas.jsonld | 2 +- data/relate/relatebioschemas.jsonld | 4 +- data/relateadmix/relateadmixbioschemas.jsonld | 4 +- data/relna/relnabioschemas.jsonld | 12 ++--- data/remap/remapbioschemas.jsonld | 18 +++---- .../removeexonlinesbioschemas.jsonld | 4 +- data/remp/rempbioschemas.jsonld | 4 +- data/rems/remsbioschemas.jsonld | 2 +- data/renato/renatobioschemas.jsonld | 4 +- data/rene/renebioschemas.jsonld | 4 +- data/repairtoire/repairtoirebioschemas.jsonld | 8 +-- .../repeat_explorerbioschemas.jsonld | 4 +- .../repeatanalyzerbioschemas.jsonld | 16 +++--- .../repeatedhighdimbioschemas.jsonld | 2 +- data/repeatoire/repeatoirebioschemas.jsonld | 4 +- data/repeatsdb/repeatsdbbioschemas.jsonld | 30 +++++------ data/repet/repetbioschemas.jsonld | 26 +++++----- data/repetita/repetitabioschemas.jsonld | 4 +- data/repex/repexbioschemas.jsonld | 8 +-- data/repfdr/repfdrbioschemas.jsonld | 2 +- data/repgenhmm/repgenhmmbioschemas.jsonld | 10 ++-- data/repitools/repitoolsbioschemas.jsonld | 22 ++++---- data/repk/repkbioschemas.jsonld | 4 +- .../replace_regexbioschemas.jsonld | 4 +- data/repliscan/repliscanbioschemas.jsonld | 4 +- data/repo/repobioschemas.jsonld | 16 +++--- data/reporter/reporterbioschemas.jsonld | 2 +- .../reportingtoolsbioschemas.jsonld | 16 +++--- data/repro/reprobioschemas.jsonld | 4 +- data/reprof/reprofbioschemas.jsonld | 4 +- .../reprogenomics_viewerbioschemas.jsonld | 8 +-- data/reputer/reputerbioschemas.jsonld | 16 +++--- data/reqon/reqonbioschemas.jsonld | 4 +- data/rerconverge/rerconvergebioschemas.jsonld | 14 +++--- data/rescue-ese/rescue-esebioschemas.jsonld | 8 +-- data/rescuenet/rescuenetbioschemas.jsonld | 4 +- data/resfinder/resfinderbioschemas.jsonld | 6 +-- data/resicon/resiconbioschemas.jsonld | 4 +- data/resid/residbioschemas.jsonld | 4 +- data/resourcerer/resourcererbioschemas.jsonld | 2 +- data/responsenet/responsenetbioschemas.jsonld | 2 +- data/respre/resprebioschemas.jsonld | 2 +- data/resprox/resproxbioschemas.jsonld | 2 +- data/restauro-g/restauro-gbioschemas.jsonld | 4 +- data/restfulse/restfulsebioschemas.jsonld | 4 +- data/restover/restoverbioschemas.jsonld | 14 +++--- data/restrict/restrictbioschemas.jsonld | 12 ++--- .../restrictfromsizebioschemas.jsonld | 4 +- .../restrictsequencelistbioschemas.jsonld | 4 +- .../restricttranscriptlistbioschemas.jsonld | 4 +- .../retentionpredictionbioschemas.jsonld | 2 +- data/retromap/retromapbioschemas.jsonld | 4 +- data/retrotector/retrotectorbioschemas.jsonld | 2 +- data/reupred/reupredbioschemas.jsonld | 4 +- data/revbayes/revbayesbioschemas.jsonld | 26 +++++----- data/reveal/revealbioschemas.jsonld | 4 +- data/revecor/revecorbioschemas.jsonld | 16 +++--- data/revseq/revseqbioschemas.jsonld | 18 +++---- data/revtrans/revtransbioschemas.jsonld | 6 +-- data/rexposome/rexposomebioschemas.jsonld | 2 +- data/rexprimer/rexprimerbioschemas.jsonld | 4 +- data/rf_qsar/rf_qsarbioschemas.jsonld | 4 +- data/rfam/rfambioschemas.jsonld | 8 +-- data/rfam_search/rfam_searchbioschemas.jsonld | 8 +-- data/rfcoil/rfcoilbioschemas.jsonld | 4 +- data/rfpred/rfpredbioschemas.jsonld | 4 +- data/rgadem/rgadembioschemas.jsonld | 8 +-- data/rgalaxy/rgalaxybioschemas.jsonld | 8 +-- data/rgb/rgbbioschemas.jsonld | 4 +- data/rgd/rgdbioschemas.jsonld | 4 +- .../rgestlibcompbioschemas.jsonld | 2 +- data/rgmql/rgmqlbioschemas.jsonld | 4 +- .../rgpicfixmatebioschemas.jsonld | 4 +- data/rgraph2js/rgraph2jsbioschemas.jsonld | 8 +-- data/rgraphviz/rgraphvizbioschemas.jsonld | 8 +-- data/rgreat/rgreatbioschemas.jsonld | 6 +-- data/rgsea/rgseabioschemas.jsonld | 8 +-- data/rgsepd/rgsepdbioschemas.jsonld | 8 +-- data/rhdf5/rhdf5bioschemas.jsonld | 4 +- data/rhdf5client/rhdf5clientbioschemas.jsonld | 4 +- data/rhdf5lib/rhdf5libbioschemas.jsonld | 4 +- data/rhea/rheabioschemas.jsonld | 2 +- data/rhtslib/rhtslibbioschemas.jsonld | 8 +-- data/rhvdm/rhvdmbioschemas.jsonld | 4 +- data/rhythm/rhythmbioschemas.jsonld | 4 +- data/ribex/ribexbioschemas.jsonld | 4 +- data/riblast/riblastbioschemas.jsonld | 4 +- data/ribocat/ribocatbioschemas.jsonld | 14 +++--- data/riboframe/riboframebioschemas.jsonld | 4 +- data/ribogalaxy/ribogalaxybioschemas.jsonld | 28 +++++------ data/ribomaker/ribomakerbioschemas.jsonld | 2 +- data/ribopeaks/ribopeaksbioschemas.jsonld | 4 +- data/ribopicker/ribopickerbioschemas.jsonld | 2 +- .../riboprofilingbioschemas.jsonld | 8 +-- data/riborex/riborexbioschemas.jsonld | 6 +-- data/riboseed/riboseedbioschemas.jsonld | 4 +- data/riboseqr/riboseqrbioschemas.jsonld | 4 +- .../riboswitch_finderbioschemas.jsonld | 4 +- .../riboswitch_scannerbioschemas.jsonld | 4 +- data/ribovision/ribovisionbioschemas.jsonld | 4 +- data/rice_galaxy/rice_galaxybioschemas.jsonld | 18 +++---- data/riddle/riddlebioschemas.jsonld | 4 +- data/rightfield/rightfieldbioschemas.jsonld | 4 +- data/riken/rikenbioschemas.jsonld | 4 +- data/ril-contour/ril-contourbioschemas.jsonld | 4 +- data/rilogo/rilogobioschemas.jsonld | 4 +- data/rimmport/rimmportbioschemas.jsonld | 8 +-- data/ring/ringbioschemas.jsonld | 4 +- data/ringer/ringerbioschemas.jsonld | 4 +- data/ringo/ringobioschemas.jsonld | 14 +++--- data/rinspector/rinspectorbioschemas.jsonld | 10 ++-- data/ripseeker/ripseekerbioschemas.jsonld | 10 ++-- data/riptide/riptidebioschemas.jsonld | 2 +- data/risa/risabioschemas.jsonld | 20 ++++---- data/riscoper/riscoperbioschemas.jsonld | 4 +- data/river/riverbioschemas.jsonld | 4 +- .../rjmcmcnucleosomesbioschemas.jsonld | 4 +- data/rl-csa/rl-csabioschemas.jsonld | 2 +- data/rlims-p/rlims-pbioschemas.jsonld | 2 +- data/rlmm/rlmmbioschemas.jsonld | 8 +-- data/rloom/rloombioschemas.jsonld | 4 +- data/rmaexpress/rmaexpressbioschemas.jsonld | 4 +- data/rmagpie/rmagpiebioschemas.jsonld | 4 +- data/rmap/rmapbioschemas.jsonld | 26 +++++----- data/rmassbank/rmassbankbioschemas.jsonld | 8 +-- data/rmat/rmatbioschemas.jsonld | 8 +-- data/rmbase/rmbasebioschemas.jsonld | 14 +++--- data/rmir/rmirbioschemas.jsonld | 4 +- data/rmsi/rmsibioschemas.jsonld | 4 +- data/rmut/rmutbioschemas.jsonld | 4 +- data/rmycoportal/rmycoportalbioschemas.jsonld | 12 ++--- data/rna-express/rna-expressbioschemas.jsonld | 2 +- data/rna-molp/rna-molpbioschemas.jsonld | 20 ++++---- data/rna-seqc/rna-seqcbioschemas.jsonld | 4 +- data/rna2dmap/rna2dmapbioschemas.jsonld | 2 +- .../rna_analyzerbioschemas.jsonld | 4 +- data/rna_compass/rna_compassbioschemas.jsonld | 8 +-- data/rna_cossmos/rna_cossmosbioschemas.jsonld | 4 +- data/rna_frabase/rna_frabasebioschemas.jsonld | 2 +- .../rna_helicase_databasebioschemas.jsonld | 4 +- data/rna_movies/rna_moviesbioschemas.jsonld | 4 +- .../rnaalishapesbioschemas.jsonld | 4 +- data/rnabindr/rnabindrbioschemas.jsonld | 4 +- .../rnabindrplusbioschemas.jsonld | 18 +++---- .../rnablueprintbioschemas.jsonld | 8 +-- data/rnabrowse/rnabrowsebioschemas.jsonld | 8 +-- .../rnacommenderbioschemas.jsonld | 8 +-- data/rnacontext/rnacontextbioschemas.jsonld | 4 +- data/rnact/rnactbioschemas.jsonld | 26 +++++----- data/rnadecay/rnadecaybioschemas.jsonld | 4 +- .../rnaeditingatlasbioschemas.jsonld | 4 +- data/rnaex/rnaexbioschemas.jsonld | 4 +- data/rnahybrid/rnahybridbioschemas.jsonld | 10 ++-- data/rnainteract/rnainteractbioschemas.jsonld | 8 +-- data/rnaither/rnaitherbioschemas.jsonld | 4 +- data/rnalien/rnalienbioschemas.jsonld | 10 ++-- data/rnaloss/rnalossbioschemas.jsonld | 2 +- data/rnamdb/rnamdbbioschemas.jsonld | 4 +- data/rnammer/rnammerbioschemas.jsonld | 4 +- data/rnamutants/rnamutantsbioschemas.jsonld | 4 +- .../rnapagenumberbioschemas.jsonld | 4 +- .../rnaparametricbioschemas.jsonld | 4 +- data/rnapasta/rnapastabioschemas.jsonld | 4 +- data/rnapdbee/rnapdbeebioschemas.jsonld | 4 +- data/rnaplex/rnaplexbioschemas.jsonld | 4 +- data/rnapred/rnapredbioschemas.jsonld | 4 +- data/rnapredator/rnapredatorbioschemas.jsonld | 4 +- data/rnaprobr/rnaprobrbioschemas.jsonld | 16 +++--- data/rnaquast/rnaquastbioschemas.jsonld | 4 +- data/rnaredprint/rnaredprintbioschemas.jsonld | 2 +- data/rnasamba/rnasambabioschemas.jsonld | 4 +- data/rnascclust/rnascclustbioschemas.jsonld | 8 +-- .../rnaseqbrowserbioschemas.jsonld | 16 +++--- data/rnaseqcomp/rnaseqcompbioschemas.jsonld | 6 +-- data/rnaseqgui/rnaseqguibioschemas.jsonld | 2 +- data/rnaseqmap/rnaseqmapbioschemas.jsonld | 2 +- data/rnaseqmut/rnaseqmutbioschemas.jsonld | 4 +- data/rnaseqpower/rnaseqpowerbioschemas.jsonld | 8 +-- .../rnaseqpowercalculatorbioschemas.jsonld | 4 +- .../rnaseqsamplesizebioschemas.jsonld | 8 +-- data/rnasnoop/rnasnoopbioschemas.jsonld | 4 +- data/rnasnp/rnasnpbioschemas.jsonld | 4 +- data/rnasoft/rnasoftbioschemas.jsonld | 4 +- data/rnaspades/rnaspadesbioschemas.jsonld | 4 +- data/rnassess/rnassessbioschemas.jsonld | 18 +++---- data/rnastrand/rnastrandbioschemas.jsonld | 4 +- .../rnastructurebioschemas.jsonld | 4 +- data/rnathermsw/rnathermswbioschemas.jsonld | 14 +++--- data/rnatips/rnatipsbioschemas.jsonld | 2 +- data/rnavirusdb/rnavirusdbbioschemas.jsonld | 4 +- data/rnaz/rnazbioschemas.jsonld | 4 +- data/rnits/rnitsbioschemas.jsonld | 4 +- data/rnmr/rnmrbioschemas.jsonld | 4 +- data/rnnotator/rnnotatorbioschemas.jsonld | 2 +- data/rnsc/rnscbioschemas.jsonld | 4 +- .../roadmap_epigenomicsbioschemas.jsonld | 10 ++-- data/roar/roarbioschemas.jsonld | 4 +- data/robetta/robettabioschemas.jsonld | 2 +- data/robina/robinabioschemas.jsonld | 4 +- data/robpower/robpowerbioschemas.jsonld | 4 +- .../robustrankaggregationbioschemas.jsonld | 4 +- data/roc/rocbioschemas.jsonld | 8 +-- data/roci/rocibioschemas.jsonld | 8 +-- data/rocketship/rocketshipbioschemas.jsonld | 24 ++++----- data/roddy/roddybioschemas.jsonld | 4 +- .../roi_feature_projectionbioschemas.jsonld | 4 +- data/roi_filter/roi_filterbioschemas.jsonld | 2 +- data/roi_metrics/roi_metricsbioschemas.jsonld | 4 +- data/roi_pca/roi_pcabioschemas.jsonld | 4 +- data/roi_sort/roi_sortbioschemas.jsonld | 4 +- data/roi_table/roi_tablebioschemas.jsonld | 2 +- data/roimcr/roimcrbioschemas.jsonld | 6 +-- data/roleswitch/roleswitchbioschemas.jsonld | 16 +++--- data/rolexa/rolexabioschemas.jsonld | 4 +- data/rols/rolsbioschemas.jsonld | 8 +-- data/roma/romabioschemas.jsonld | 2 +- data/romprev/romprevbioschemas.jsonld | 4 +- data/ronn/ronnbioschemas.jsonld | 4 +- data/rontotools/rontotoolsbioschemas.jsonld | 6 +-- data/rootarray/rootarraybioschemas.jsonld | 2 +- data/ropls/roplsbioschemas.jsonld | 8 +-- .../rosetta_flexpepdockbioschemas.jsonld | 4 +- .../rosettaantibodybioschemas.jsonld | 4 +- .../rosettadesignbioschemas.jsonld | 2 +- .../rosettadock_serverbioschemas.jsonld | 4 +- data/rosettr/rosettrbioschemas.jsonld | 16 +++--- data/rouge/rougebioschemas.jsonld | 4 +- data/rpa/rpabioschemas.jsonld | 8 +-- data/rpf/rpfbioschemas.jsonld | 4 +- data/rpicoo/rpicoobioschemas.jsonld | 4 +- data/rpiter/rpiterbioschemas.jsonld | 22 ++++---- data/rpoly/rpolybioschemas.jsonld | 4 +- data/rppapipe/rppapipebioschemas.jsonld | 4 +- data/rpredictor/rpredictorbioschemas.jsonld | 4 +- data/rproteomics/rproteomicsbioschemas.jsonld | 4 +- .../rprotobuflibbioschemas.jsonld | 4 +- data/rpsixml/rpsixmlbioschemas.jsonld | 4 +- data/rpx/rpxbioschemas.jsonld | 4 +- data/rqc/rqcbioschemas.jsonld | 4 +- data/rqt/rqtbioschemas.jsonld | 18 +++---- data/rqubic/rqubicbioschemas.jsonld | 12 ++--- data/rrdb/rrdbbioschemas.jsonld | 2 +- data/rrdistmaps/rrdistmapsbioschemas.jsonld | 2 +- data/rrdp/rrdpbioschemas.jsonld | 6 +-- data/rre/rrebioschemas.jsonld | 4 +- data/rregrs/rregrsbioschemas.jsonld | 18 +++---- data/rrest/rrestbioschemas.jsonld | 16 +++--- data/rrho/rrhobioschemas.jsonld | 4 +- data/rrmdb/rrmdbbioschemas.jsonld | 22 ++++---- .../rs-expnet-crnmfbioschemas.jsonld | 4 +- .../rs-webpredictorbioschemas.jsonld | 20 ++++---- data/rsalvador/rsalvadorbioschemas.jsonld | 8 +-- data/rsamtools/rsamtoolsbioschemas.jsonld | 8 +-- data/rsat/rsatbioschemas.jsonld | 4 +- .../rsat_-_retrieve_sequencebioschemas.jsonld | 4 +- .../rsat_var-toolsbioschemas.jsonld | 12 ++--- data/rsbml/rsbmlbioschemas.jsonld | 6 +-- ...scripts_for_data_analysisbioschemas.jsonld | 8 +-- data/rsd/rsdbioschemas.jsonld | 4 +- data/rseg/rsegbioschemas.jsonld | 4 +- data/rseqan/rseqanbioschemas.jsonld | 4 +- data/rseqc/rseqcbioschemas.jsonld | 4 +- data/rseqrep/rseqrepbioschemas.jsonld | 2 +- data/rseqtu-a/rseqtu-abioschemas.jsonld | 20 ++++---- data/rsffreader/rsffreaderbioschemas.jsonld | 8 +-- data/rsi/rsibioschemas.jsonld | 4 +- data/rsite/rsitebioschemas.jsonld | 4 +- data/rsnp_guide/rsnp_guidebioschemas.jsonld | 4 +- data/rspred/rspredbioschemas.jsonld | 4 +- data/rsssite/rsssitebioschemas.jsonld | 4 +- data/rstoolbox/rstoolboxbioschemas.jsonld | 14 +++--- data/rstudio/rstudiobioschemas.jsonld | 4 +- data/rsubread/rsubreadbioschemas.jsonld | 22 ++++---- data/rsvsim/rsvsimbioschemas.jsonld | 6 +-- data/rswebtool/rswebtoolbioschemas.jsonld | 4 +- data/rt/rtbioschemas.jsonld | 4 +- .../rtanalyzer-retrobioschemas.jsonld | 2 +- data/rtanalyzer/rtanalyzerbioschemas.jsonld | 4 +- data/rtandem/rtandembioschemas.jsonld | 8 +-- data/rtcga/rtcgabioschemas.jsonld | 8 +-- .../rtcgatoolboxbioschemas.jsonld | 6 +-- data/rtk/rtkbioschemas.jsonld | 2 +- data/rtn/rtnbioschemas.jsonld | 18 +++---- data/rtnduals/rtndualsbioschemas.jsonld | 8 +-- data/rtopper/rtopperbioschemas.jsonld | 26 +++++----- data/rtp/rtpbioschemas.jsonld | 4 +- data/rtracklayer/rtracklayerbioschemas.jsonld | 6 +-- data/rtree/rtreebioschemas.jsonld | 2 +- data/rtreemix/rtreemixbioschemas.jsonld | 4 +- data/rtrm/rtrmbioschemas.jsonld | 8 +-- data/rtrmui/rtrmuibioschemas.jsonld | 8 +-- data/rtxi/rtxibioschemas.jsonld | 4 +- data/rubi/rubibioschemas.jsonld | 4 +- data/rubioseq/rubioseqbioschemas.jsonld | 4 +- data/rucs/rucsbioschemas.jsonld | 4 +- data/rum/rumbioschemas.jsonld | 20 ++++---- data/runibic/runibicbioschemas.jsonld | 4 +- data/runsbml/runsbmlbioschemas.jsonld | 4 +- data/rust-bio/rust-biobioschemas.jsonld | 4 +- data/ruv-iii/ruv-iiibioschemas.jsonld | 26 +++++----- .../ruvnormalizebioschemas.jsonld | 10 ++-- data/ruvseq/ruvseqbioschemas.jsonld | 4 +- data/rv-typer/rv-typerbioschemas.jsonld | 4 +- data/rvboost/rvboostbioschemas.jsonld | 8 +-- data/rvista/rvistabioschemas.jsonld | 4 +- data/rvpedigree/rvpedigreebioschemas.jsonld | 10 ++-- data/rvs/rvsbioschemas.jsonld | 4 +- data/rvsharing/rvsharingbioschemas.jsonld | 4 +- data/rvtests/rvtestsbioschemas.jsonld | 4 +- .../rwikipathwaysbioschemas.jsonld | 4 +- data/rxa/rxabioschemas.jsonld | 4 +- data/rxnsim/rxnsimbioschemas.jsonld | 8 +-- data/s-mart/s-martbioschemas.jsonld | 4 +- data/s-psorter/s-psorterbioschemas.jsonld | 2 +- data/s2o/s2obioschemas.jsonld | 18 +++---- data/s2p/s2pbioschemas.jsonld | 4 +- data/s4te/s4tebioschemas.jsonld | 2 +- data/s4vectors/s4vectorsbioschemas.jsonld | 4 +- data/sa-conf/sa-confbioschemas.jsonld | 4 +- data/sa-mot/sa-motbioschemas.jsonld | 6 +-- data/sa-search/sa-searchbioschemas.jsonld | 4 +- data/sabbac/sabbacbioschemas.jsonld | 8 +-- data/saber/saberbioschemas.jsonld | 4 +- data/sable/sablebioschemas.jsonld | 4 +- data/sabund/sabundbioschemas.jsonld | 4 +- data/sadmama/sadmamabioschemas.jsonld | 4 +- data/safe/safebioschemas.jsonld | 8 +-- data/safeec/safeecbioschemas.jsonld | 4 +- data/sagat/sagatbioschemas.jsonld | 4 +- data/sagemap/sagemapbioschemas.jsonld | 2 +- data/sagenhaft/sagenhaftbioschemas.jsonld | 4 +- data/sagexplore/sagexplorebioschemas.jsonld | 4 +- data/sagpar/sagparbioschemas.jsonld | 4 +- data/sahg/sahgbioschemas.jsonld | 4 +- data/salad/saladbioschemas.jsonld | 4 +- data/salmobase/salmobasebioschemas.jsonld | 2 +- .../salmonella_crispr_typingbioschemas.jsonld | 12 ++--- data/sam/sambioschemas.jsonld | 4 +- data/sam2tsv/sam2tsvbioschemas.jsonld | 4 +- data/sam_to_bam/sam_to_bambioschemas.jsonld | 4 +- data/sam_wga/sam_wgabioschemas.jsonld | 2 +- data/sambamba/sambambabioschemas.jsonld | 4 +- data/sambinder/sambinderbioschemas.jsonld | 8 +-- data/samblaster/samblasterbioschemas.jsonld | 4 +- data/samcluster/samclusterbioschemas.jsonld | 4 +- data/samexplorer/samexplorerbioschemas.jsonld | 4 +- .../samjavascriptbioschemas.jsonld | 8 +-- data/samnetweb/samnetwebbioschemas.jsonld | 4 +- data/sampdi/sampdibioschemas.jsonld | 4 +- .../sampleclassifierbioschemas.jsonld | 4 +- data/sampleseq2/sampleseq2bioschemas.jsonld | 4 +- data/sampletrees/sampletreesbioschemas.jsonld | 20 ++++---- data/samsa2/samsa2bioschemas.jsonld | 4 +- data/samselect/samselectbioschemas.jsonld | 4 +- data/samspectral/samspectralbioschemas.jsonld | 6 +-- data/samtools/samtoolsbioschemas.jsonld | 18 +++---- .../samtools_filterbioschemas.jsonld | 2 +- .../samtools_flagstatbioschemas.jsonld | 4 +- .../samtools_idxstatsbioschemas.jsonld | 2 +- .../samtools_slice_bambioschemas.jsonld | 4 +- .../samtools_sortbioschemas.jsonld | 4 +- .../sana-alignerbioschemas.jsonld | 2 +- data/sandpuma/sandpumabioschemas.jsonld | 4 +- data/sangerseqr/sangerseqrbioschemas.jsonld | 14 +++--- data/sann/sannbioschemas.jsonld | 4 +- .../sansparallelbioschemas.jsonld | 2 +- data/santa/santabioschemas.jsonld | 4 +- data/sanxot/sanxotbioschemas.jsonld | 16 +++--- data/sapfinder/sapfinderbioschemas.jsonld | 4 +- data/saps/sapsbioschemas.jsonld | 6 +-- data/saps_ebi/saps_ebibioschemas.jsonld | 4 +- data/sara-cnv/sara-cnvbioschemas.jsonld | 4 +- data/sarek/sarekbioschemas.jsonld | 22 ++++---- data/sarotup/sarotupbioschemas.jsonld | 4 +- data/sarpred/sarpredbioschemas.jsonld | 4 +- data/sartools/sartoolsbioschemas.jsonld | 4 +- .../sartools_deseq2bioschemas.jsonld | 4 +- .../sartools_edgerbioschemas.jsonld | 4 +- data/sas/sasbioschemas.jsonld | 4 +- data/sase-hunter/sase-hunterbioschemas.jsonld | 4 +- data/sasgene/sasgenebioschemas.jsonld | 4 +- data/sasm-vgwas/sasm-vgwasbioschemas.jsonld | 4 +- data/sasquant/sasquantbioschemas.jsonld | 2 +- data/satellog/satellogbioschemas.jsonld | 4 +- data/sativa/sativabioschemas.jsonld | 4 +- data/saucie/sauciebioschemas.jsonld | 2 +- .../savant_genome_browserbioschemas.jsonld | 4 +- data/savor/savorbioschemas.jsonld | 4 +- data/savr/savrbioschemas.jsonld | 4 +- data/savvycnv/savvycnvbioschemas.jsonld | 2 +- data/saxster/saxsterbioschemas.jsonld | 2 +- data/sbetoolbox/sbetoolboxbioschemas.jsonld | 4 +- data/sbgntikz/sbgntikzbioschemas.jsonld | 4 +- data/sbgr/sbgrbioschemas.jsonld | 8 +-- data/sbl/sblbioschemas.jsonld | 4 +- data/sbml/sbmlbioschemas.jsonld | 4 +- data/sbml2latex/sbml2latexbioschemas.jsonld | 2 +- data/sbmleditor/sbmleditorbioschemas.jsonld | 4 +- data/sbmlmod/sbmlmodbioschemas.jsonld | 16 +++--- data/sbmlr/sbmlrbioschemas.jsonld | 4 +- .../sbmlsqueezerbioschemas.jsonld | 2 +- data/sbpks2/sbpks2bioschemas.jsonld | 12 ++--- data/sbscl/sbsclbioschemas.jsonld | 4 +- data/sbw/sbwbioschemas.jsonld | 4 +- data/sc3/sc3bioschemas.jsonld | 28 +++++------ .../scaffold_hunterbioschemas.jsonld | 4 +- .../scaffold_viewerbioschemas.jsonld | 4 +- data/scale4c/scale4cbioschemas.jsonld | 2 +- data/scaleus/scaleusbioschemas.jsonld | 8 +-- data/scallop-lr/scallop-lrbioschemas.jsonld | 4 +- data/scampi/scampibioschemas.jsonld | 4 +- data/scampi2/scampi2bioschemas.jsonld | 4 +- data/scanaflp/scanaflpbioschemas.jsonld | 4 +- data/scanmot/scanmotbioschemas.jsonld | 8 +-- data/scanprosite/scanprositebioschemas.jsonld | 2 +- data/scanpy/scanpybioschemas.jsonld | 4 +- data/scansite/scansitebioschemas.jsonld | 2 +- data/scanstat/scanstatbioschemas.jsonld | 4 +- data/scapd/scapdbioschemas.jsonld | 6 +-- data/scarf/scarfbioschemas.jsonld | 4 +- data/scater/scaterbioschemas.jsonld | 4 +- data/scbio/scbiobioschemas.jsonld | 6 +-- .../sccmecfinderbioschemas.jsonld | 8 +-- data/scdd/scddbioschemas.jsonld | 2 +- data/scde/scdebioschemas.jsonld | 4 +- .../scde_discoverybioschemas.jsonld | 4 +- data/scec/scecbioschemas.jsonld | 4 +- data/scenery/scenerybioschemas.jsonld | 28 +++++------ data/scenic/scenicbioschemas.jsonld | 4 +- data/scepath/scepathbioschemas.jsonld | 4 +- data/scertf/scertfbioschemas.jsonld | 4 +- data/scfba/scfbabioschemas.jsonld | 12 ++--- .../scfeaturefilterbioschemas.jsonld | 2 +- data/scfind/scfindbioschemas.jsonld | 4 +- data/scg/scgbioschemas.jsonld | 4 +- data/schicnorm/schicnormbioschemas.jsonld | 6 +-- data/schmutzi/schmutzibioschemas.jsonld | 4 +- data/sci-lmm/sci-lmmbioschemas.jsonld | 22 ++++---- data/sciluigi/sciluigibioschemas.jsonld | 20 ++++---- data/scimo/scimobioschemas.jsonld | 4 +- data/scipion/scipionbioschemas.jsonld | 2 +- .../scipion_web_toolsbioschemas.jsonld | 6 +-- data/sciroko/scirokobioschemas.jsonld | 4 +- data/scisi/scisibioschemas.jsonld | 8 +-- data/scite/scitebioschemas.jsonld | 4 +- data/scitrack/scitrackbioschemas.jsonld | 4 +- data/sclvm/sclvmbioschemas.jsonld | 2 +- data/scmap/scmapbioschemas.jsonld | 4 +- data/scmd/scmdbioschemas.jsonld | 4 +- data/scmeth/scmethbioschemas.jsonld | 4 +- data/scmfdd/scmfddbioschemas.jsonld | 4 +- data/scmmtp/scmmtpbioschemas.jsonld | 4 +- data/scmpsp/scmpspbioschemas.jsonld | 4 +- data/scnpf/scnpfbioschemas.jsonld | 24 ++++----- data/scones/sconesbioschemas.jsonld | 4 +- data/sconify/sconifybioschemas.jsonld | 4 +- data/scop/scopbioschemas.jsonld | 4 +- data/scop3d/scop3dbioschemas.jsonld | 4 +- data/scopa/scopabioschemas.jsonld | 18 +++---- data/scope-scrna/scope-scrnabioschemas.jsonld | 4 +- data/scor/scorbioschemas.jsonld | 4 +- data/scorange/scorangebioschemas.jsonld | 4 +- data/scorecons/scoreconsbioschemas.jsonld | 4 +- data/scoreinvhap/scoreinvhapbioschemas.jsonld | 4 +- data/scoria/scoriabioschemas.jsonld | 4 +- data/scotti/scottibioschemas.jsonld | 18 +++---- data/scotty/scottybioschemas.jsonld | 2 +- data/scpipe/scpipebioschemas.jsonld | 4 +- data/scpsrm/scpsrmbioschemas.jsonld | 4 +- data/scr_find/scr_findbioschemas.jsonld | 2 +- data/scrabble/scrabblebioschemas.jsonld | 8 +-- data/scran/scranbioschemas.jsonld | 12 ++--- data/scrat/scratbioschemas.jsonld | 4 +- data/scratch/scratchbioschemas.jsonld | 12 ++--- ...scratch_protein_predictorbioschemas.jsonld | 16 +++--- data/screenbeam/screenbeambioschemas.jsonld | 4 +- data/scribl/scriblbioschemas.jsonld | 4 +- data/scripture/scripturebioschemas.jsonld | 4 +- data/scruff/scruffbioschemas.jsonld | 8 +-- data/scrwl/scrwlbioschemas.jsonld | 4 +- data/scry/scrybioschemas.jsonld | 10 ++-- data/scscope/scscopebioschemas.jsonld | 4 +- data/scsr/scsrbioschemas.jsonld | 8 +-- data/sctree/sctreebioschemas.jsonld | 8 +-- data/scudo/scudobioschemas.jsonld | 4 +- data/sculptor/sculptorbioschemas.jsonld | 4 +- data/sczewas/sczewasbioschemas.jsonld | 2 +- data/sda/sdabioschemas.jsonld | 4 +- data/sdams/sdamsbioschemas.jsonld | 4 +- data/sde/sdebioschemas.jsonld | 4 +- data/sdeap/sdeapbioschemas.jsonld | 4 +- data/sdef/sdefbioschemas.jsonld | 2 +- data/sdmdata/sdmdatabioschemas.jsonld | 8 +-- data/sdmtoolbox/sdmtoolboxbioschemas.jsonld | 16 +++--- data/sdphapinfer/sdphapinferbioschemas.jsonld | 4 +- data/sdppred/sdppredbioschemas.jsonld | 2 +- data/sea-archive/sea-archivebioschemas.jsonld | 8 +-- data/sea/seabioschemas.jsonld | 4 +- .../seagrass_zmu_genomebioschemas.jsonld | 4 +- data/seamote/seamotebioschemas.jsonld | 2 +- data/seance/seancebioschemas.jsonld | 8 +-- data/sear/searbioschemas.jsonld | 8 +-- data/searchgtr/searchgtrbioschemas.jsonld | 4 +- data/searchgui/searchguibioschemas.jsonld | 8 +-- data/seas/seasbioschemas.jsonld | 4 +- data/seaview/seaviewbioschemas.jsonld | 2 +- data/sebnif/sebnifbioschemas.jsonld | 12 ++--- data/seca/secabioschemas.jsonld | 4 +- data/secisaln/secisalnbioschemas.jsonld | 4 +- data/secisdesign/secisdesignbioschemas.jsonld | 6 +-- .../secisearch3_seblastianbioschemas.jsonld | 4 +- data/seclaf/seclafbioschemas.jsonld | 8 +-- data/secretomep/secretomepbioschemas.jsonld | 4 +- .../secstrannotatorbioschemas.jsonld | 4 +- data/securema/securemabioschemas.jsonld | 4 +- data/seder/sederbioschemas.jsonld | 4 +- data/sedus/sedusbioschemas.jsonld | 4 +- data/seealso/seealsobioschemas.jsonld | 18 +++---- data/seecer/seecerbioschemas.jsonld | 8 +-- data/seed/seedbioschemas.jsonld | 4 +- data/seedgff/seedgffbioschemas.jsonld | 4 +- data/seedy/seedybioschemas.jsonld | 6 +-- data/seek/seekbioschemas.jsonld | 4 +- data/seekr/seekrbioschemas.jsonld | 12 ++--- data/segmentseq/segmentseqbioschemas.jsonld | 4 +- data/segmer/segmerbioschemas.jsonld | 4 +- data/segtools/segtoolsbioschemas.jsonld | 2 +- data/segtor/segtorbioschemas.jsonld | 4 +- data/segway/segwaybioschemas.jsonld | 18 +++---- data/selansi/selansibioschemas.jsonld | 4 +- .../selectbesthitbioschemas.jsonld | 4 +- .../selecthitscorebioschemas.jsonld | 4 +- data/selectome/selectomebioschemas.jsonld | 18 +++---- data/selecton/selectonbioschemas.jsonld | 4 +- data/selectpro/selectprobioschemas.jsonld | 2 +- data/selene/selenebioschemas.jsonld | 8 +-- .../selenoprofiles3bioschemas.jsonld | 4 +- data/selenzyme/selenzymebioschemas.jsonld | 4 +- data/selex/selexbioschemas.jsonld | 8 +-- data/selftarget/selftargetbioschemas.jsonld | 4 +- data/selphi/selphibioschemas.jsonld | 12 ++--- data/seltarbase/seltarbasebioschemas.jsonld | 4 +- data/selva/selvabioschemas.jsonld | 4 +- data/sem/sembioschemas.jsonld | 4 +- data/sema/semabioschemas.jsonld | 4 +- .../semantic_body_browserbioschemas.jsonld | 4 +- data/semdist/semdistbioschemas.jsonld | 8 +-- data/seme/semebioschemas.jsonld | 4 +- data/semgen/semgenbioschemas.jsonld | 4 +- data/semisup/semisupbioschemas.jsonld | 4 +- data/sensa/sensabioschemas.jsonld | 4 +- data/sensipath/sensipathbioschemas.jsonld | 4 +- data/sepira/sepirabioschemas.jsonld | 8 +-- data/seq2feature/seq2featurebioschemas.jsonld | 4 +- data/seq2logo/seq2logobioschemas.jsonld | 8 +-- data/seq2pathway/seq2pathwaybioschemas.jsonld | 30 +++++------ data/seq2ref/seq2refbioschemas.jsonld | 4 +- data/seqacademy/seqacademybioschemas.jsonld | 8 +-- data/seqan/seqanbioschemas.jsonld | 4 +- data/seqarray/seqarraybioschemas.jsonld | 14 +++--- data/seqassist/seqassistbioschemas.jsonld | 4 +- data/seqatoms/seqatomsbioschemas.jsonld | 4 +- data/seqbench/seqbenchbioschemas.jsonld | 14 +++--- data/seqbias/seqbiasbioschemas.jsonld | 10 ++-- data/seqbuster/seqbusterbioschemas.jsonld | 4 +- data/seqcat/seqcatbioschemas.jsonld | 4 +- data/seqcksum/seqcksumbioschemas.jsonld | 4 +- data/seqcluster/seqclusterbioschemas.jsonld | 8 +-- data/seqcna/seqcnabioschemas.jsonld | 20 ++++---- data/seqcombo/seqcombobioschemas.jsonld | 4 +- data/seqcons/seqconsbioschemas.jsonld | 4 +- data/seqcount/seqcountbioschemas.jsonld | 14 +++--- data/seqdepot/seqdepotbioschemas.jsonld | 4 +- data/seqfam/seqfambioschemas.jsonld | 4 +- data/seqfeatr/seqfeatrbioschemas.jsonld | 16 +++--- data/seqfire/seqfirebioschemas.jsonld | 4 +- data/seqfold/seqfoldbioschemas.jsonld | 4 +- data/seqgsea/seqgseabioschemas.jsonld | 16 +++--- data/seqhound/seqhoundbioschemas.jsonld | 4 +- data/seql-nrps/seql-nrpsbioschemas.jsonld | 12 ++--- data/seqlm/seqlmbioschemas.jsonld | 4 +- data/seqlogo/seqlogobioschemas.jsonld | 8 +-- data/seqman_ngen/seqman_ngenbioschemas.jsonld | 4 +- data/seqmap/seqmapbioschemas.jsonld | 4 +- data/seqmatchall/seqmatchallbioschemas.jsonld | 14 +++--- .../seqminer-variantbioschemas.jsonld | 4 +- data/seqminer/seqminerbioschemas.jsonld | 4 +- data/seqpattern/seqpatternbioschemas.jsonld | 4 +- data/seqplots/seqplotsbioschemas.jsonld | 2 +- data/seqpower/seqpowerbioschemas.jsonld | 4 +- data/seqprocess/seqprocessbioschemas.jsonld | 4 +- data/seqret-ebi/seqret-ebibioschemas.jsonld | 6 +-- data/seqret/seqretbioschemas.jsonld | 16 +++--- .../seqretsetallbioschemas.jsonld | 14 +++--- data/seqretsplit/seqretsplitbioschemas.jsonld | 12 ++--- data/seqseg/seqsegbioschemas.jsonld | 4 +- data/seqsetvis/seqsetvisbioschemas.jsonld | 4 +- data/seqsimla/seqsimlabioschemas.jsonld | 4 +- data/seqsite/seqsitebioschemas.jsonld | 4 +- data/seqspark/seqsparkbioschemas.jsonld | 12 ++--- data/seqsqc/seqsqcbioschemas.jsonld | 4 +- data/seqstrap/seqstrapbioschemas.jsonld | 4 +- data/seqtailor/seqtailorbioschemas.jsonld | 32 ++++++------ data/seqtk/seqtkbioschemas.jsonld | 8 +-- data/seqtools/seqtoolsbioschemas.jsonld | 8 +-- data/seqtrace/seqtracebioschemas.jsonld | 2 +- data/seqtrim/seqtrimbioschemas.jsonld | 4 +- data/sequalyzer/sequalyzerbioschemas.jsonld | 4 +- .../sequana_coveragebioschemas.jsonld | 6 +-- data/sequanix/sequanixbioschemas.jsonld | 4 +- .../sequence_harmonybioschemas.jsonld | 4 +- .../sequence_maneuvererbioschemas.jsonld | 2 +- .../sequence_searcherbioschemas.jsonld | 4 +- data/sequencher/sequencherbioschemas.jsonld | 4 +- data/sequins/sequinsbioschemas.jsonld | 4 +- data/seqvartools/seqvartoolsbioschemas.jsonld | 8 +-- data/seqvista/seqvistabioschemas.jsonld | 6 +-- data/seqware/seqwarebioschemas.jsonld | 18 +++---- data/seqxref/seqxrefbioschemas.jsonld | 16 +++--- data/seqxrefget/seqxrefgetbioschemas.jsonld | 18 +++---- data/serendip/serendipbioschemas.jsonld | 8 +-- data/servertell/servertellbioschemas.jsonld | 4 +- data/seten/setenbioschemas.jsonld | 16 +++--- data/setsapp/setsappbioschemas.jsonld | 2 +- data/setter/setterbioschemas.jsonld | 4 +- .../setuppromoterbioschemas.jsonld | 4 +- data/sevenc/sevencbioschemas.jsonld | 4 +- data/sewer/sewerbioschemas.jsonld | 4 +- data/sexy/sexybioschemas.jsonld | 4 +- data/sfdr/sfdrbioschemas.jsonld | 2 +- data/sfesa/sfesabioschemas.jsonld | 4 +- data/sfinx/sfinxbioschemas.jsonld | 4 +- data/sfmap/sfmapbioschemas.jsonld | 4 +- data/sfold/sfoldbioschemas.jsonld | 4 +- data/sfs_code/sfs_codebioschemas.jsonld | 4 +- data/sgatools/sgatoolsbioschemas.jsonld | 4 +- data/sgd/sgdbioschemas.jsonld | 2 +- data/sgi/sgibioschemas.jsonld | 4 +- data/sgp2/sgp2bioschemas.jsonld | 10 ++-- .../sgrp_blast_serverbioschemas.jsonld | 8 +-- data/sgseq/sgseqbioschemas.jsonld | 18 +++---- data/sgtarget/sgtargetbioschemas.jsonld | 4 +- data/sh3-hunter/sh3-hunterbioschemas.jsonld | 4 +- data/shaep/shaepbioschemas.jsonld | 2 +- data/shaman/shamanbioschemas.jsonld | 8 +-- data/shambhala/shambhalabioschemas.jsonld | 20 ++++---- .../shatterproofbioschemas.jsonld | 4 +- data/she-ra/she-rabioschemas.jsonld | 4 +- data/shear/shearbioschemas.jsonld | 4 +- data/sheep/sheepbioschemas.jsonld | 4 +- data/sherman/shermanbioschemas.jsonld | 4 +- data/shiftcor/shiftcorbioschemas.jsonld | 4 +- data/shiftor/shiftorbioschemas.jsonld | 4 +- data/shifty/shiftybioschemas.jsonld | 4 +- data/shinycircos/shinycircosbioschemas.jsonld | 4 +- .../shinydiversitybioschemas.jsonld | 4 +- data/shinygeo/shinygeobioschemas.jsonld | 4 +- .../shinyheatmapbioschemas.jsonld | 10 ++-- data/shinymethyl/shinymethylbioschemas.jsonld | 20 ++++---- data/shinysom/shinysombioschemas.jsonld | 12 ++--- data/shinytandem/shinytandembioschemas.jsonld | 8 +-- data/shiprec/shiprecbioschemas.jsonld | 4 +- data/shorah/shorahbioschemas.jsonld | 4 +- data/shore/shorebioschemas.jsonld | 4 +- data/shoremap/shoremapbioschemas.jsonld | 8 +-- data/shortread/shortreadbioschemas.jsonld | 20 ++++---- data/shorty/shortybioschemas.jsonld | 4 +- data/shot/shotbioschemas.jsonld | 2 +- data/shovill/shovillbioschemas.jsonld | 22 ++++---- data/show_emfit/show_emfitbioschemas.jsonld | 4 +- data/show_simul/show_simulbioschemas.jsonld | 4 +- data/showalign/showalignbioschemas.jsonld | 6 +-- .../showalign_ws_husarbioschemas.jsonld | 4 +- data/showdb/showdbbioschemas.jsonld | 12 ++--- data/showfeat/showfeatbioschemas.jsonld | 10 ++-- data/showorf/showorfbioschemas.jsonld | 8 +-- data/showpep/showpepbioschemas.jsonld | 10 ++-- data/showseq/showseqbioschemas.jsonld | 4 +- data/showserver/showserverbioschemas.jsonld | 14 +++--- data/shrimpgpat/shrimpgpatbioschemas.jsonld | 8 +-- data/shuffleseq/shuffleseqbioschemas.jsonld | 10 ++-- data/siamcat/siamcatbioschemas.jsonld | 14 +++--- data/sian/sianbioschemas.jsonld | 4 +- data/siapopr/siapoprbioschemas.jsonld | 4 +- data/sib-blast/sib-blastbioschemas.jsonld | 4 +- data/sibelia/sibeliabioschemas.jsonld | 2 +- data/sibmed/sibmedbioschemas.jsonld | 4 +- data/sibsim4/sibsim4bioschemas.jsonld | 4 +- data/sictools/sictoolsbioschemas.jsonld | 8 +-- .../side-effectsbioschemas.jsonld | 8 +-- data/sider/siderbioschemas.jsonld | 6 +-- data/sidirect/sidirectbioschemas.jsonld | 4 +- data/sidr/sidrbioschemas.jsonld | 4 +- data/siena/sienabioschemas.jsonld | 4 +- data/sievesifter/sievesifterbioschemas.jsonld | 2 +- data/sift/siftbioschemas.jsonld | 16 +++--- data/sig2biopax/sig2biopaxbioschemas.jsonld | 4 +- data/sigar/sigarbioschemas.jsonld | 4 +- data/sigcheck/sigcheckbioschemas.jsonld | 8 +-- data/sigcleave/sigcleavebioschemas.jsonld | 14 +++--- data/sigfuge/sigfugebioschemas.jsonld | 2 +- data/siggenes/siggenesbioschemas.jsonld | 8 +-- data/sights/sightsbioschemas.jsonld | 8 +-- data/sighunt/sighuntbioschemas.jsonld | 4 +- data/sigma/sigmabioschemas.jsonld | 4 +- data/sigmod/sigmodbioschemas.jsonld | 4 +- data/signal-3l/signal-3lbioschemas.jsonld | 4 +- data/signal-cf/signal-cfbioschemas.jsonld | 4 +- data/signalp/signalpbioschemas.jsonld | 12 ++--- .../signalspiderbioschemas.jsonld | 8 +-- data/signature/signaturebioschemas.jsonld | 4 +- data/signer/signerbioschemas.jsonld | 8 +-- data/signor/signorbioschemas.jsonld | 14 +++--- data/sigpathway/sigpathwaybioschemas.jsonld | 2 +- ...igprofilermatrixgeneratorbioschemas.jsonld | 4 +- data/sigqc/sigqcbioschemas.jsonld | 10 ++-- .../sigreannot-martbioschemas.jsonld | 4 +- data/sigsquared/sigsquaredbioschemas.jsonld | 4 +- data/sigtree/sigtreebioschemas.jsonld | 10 ++-- data/silactor/silactorbioschemas.jsonld | 4 +- data/silent/silentbioschemas.jsonld | 6 +-- .../silis-ptoxrabioschemas.jsonld | 4 +- data/silkdb/silkdbbioschemas.jsonld | 2 +- data/siloco/silocobioschemas.jsonld | 4 +- data/silva/silvabioschemas.jsonld | 12 ++--- .../silva_tree_viewerbioschemas.jsonld | 2 +- data/silvangs/silvangsbioschemas.jsonld | 8 +-- data/sim/simbioschemas.jsonld | 4 +- data/sim1000g/sim1000gbioschemas.jsonld | 8 +-- data/sim_expasy/sim_expasybioschemas.jsonld | 2 +- data/simap/simapbioschemas.jsonld | 14 +++--- data/simat/simatbioschemas.jsonld | 8 +-- .../simba-cractoolsbioschemas.jsonld | 4 +- data/simba/simbabioschemas.jsonld | 16 +++--- .../simbindprofilesbioschemas.jsonld | 4 +- data/simboost/simboostbioschemas.jsonld | 4 +- data/simcal/simcalbioschemas.jsonld | 4 +- data/simcep/simcepbioschemas.jsonld | 4 +- data/simcluster/simclusterbioschemas.jsonld | 4 +- .../simcomp-subcompbioschemas.jsonld | 4 +- data/simconcept/simconceptbioschemas.jsonld | 4 +- .../simexpr2sampledatabioschemas.jsonld | 4 +- data/simextargid/simextargidbioschemas.jsonld | 4 +- data/simflu/simflubioschemas.jsonld | 4 +- data/similarpeak/similarpeakbioschemas.jsonld | 8 +-- data/simlr/simlrbioschemas.jsonld | 2 +- data/simmap/simmapbioschemas.jsonld | 4 +- data/simmune/simmunebioschemas.jsonld | 2 +- data/simped/simpedbioschemas.jsonld | 4 +- data/simphospho/simphosphobioschemas.jsonld | 4 +- .../simple_clinvarbioschemas.jsonld | 20 ++++---- data/simpleaffy/simpleaffybioschemas.jsonld | 4 +- .../simplesyntenybioschemas.jsonld | 12 ++--- data/simplifier/simplifierbioschemas.jsonld | 4 +- data/simrare/simrarebioschemas.jsonld | 4 +- data/simreg/simregbioschemas.jsonld | 4 +- data/simtoolbox/simtoolboxbioschemas.jsonld | 2 +- data/simug/simugbioschemas.jsonld | 4 +- data/simulatorz/simulatorzbioschemas.jsonld | 4 +- data/simwalk/simwalkbioschemas.jsonld | 2 +- data/sina/sinabioschemas.jsonld | 4 +- data/sinbase/sinbasebioschemas.jsonld | 4 +- data/sincell/sincellbioschemas.jsonld | 40 +++++++-------- .../singlecellexperimentbioschemas.jsonld | 2 +- data/singscore/singscorebioschemas.jsonld | 4 +- .../singularity_hubbioschemas.jsonld | 4 +- data/sinuscor/sinuscorbioschemas.jsonld | 8 +-- data/sipred/sipredbioschemas.jsonld | 4 +- data/sipros/siprosbioschemas.jsonld | 4 +- data/sirah/sirahbioschemas.jsonld | 4 +- data/sircah/sircahbioschemas.jsonld | 4 +- data/sires/siresbioschemas.jsonld | 8 +-- data/sirius/siriusbioschemas.jsonld | 4 +- data/sirna/sirnabioschemas.jsonld | 16 +++--- .../sirna_selectionbioschemas.jsonld | 4 +- data/sirw/sirwbioschemas.jsonld | 4 +- data/siseq/siseqbioschemas.jsonld | 4 +- data/sispa/sispabioschemas.jsonld | 6 +-- data/sissrs/sissrsbioschemas.jsonld | 4 +- data/sitar/sitarbioschemas.jsonld | 4 +- data/sitebinder/sitebinderbioschemas.jsonld | 8 +-- data/sitecon/siteconbioschemas.jsonld | 4 +- data/siteengine/siteenginebioschemas.jsonld | 4 +- .../sitehound-webbioschemas.jsonld | 4 +- data/sitesampler/sitesamplerbioschemas.jsonld | 4 +- data/siteseer/siteseerbioschemas.jsonld | 4 +- data/sitex/sitexbioschemas.jsonld | 4 +- data/sivirus/sivirusbioschemas.jsonld | 4 +- data/sixpac/sixpacbioschemas.jsonld | 4 +- data/sixpack-ebi/sixpack-ebibioschemas.jsonld | 10 ++-- data/sixpack/sixpackbioschemas.jsonld | 14 +++--- data/sizepower/sizepowerbioschemas.jsonld | 8 +-- data/sizeseq/sizeseqbioschemas.jsonld | 18 +++---- data/sjcount/sjcountbioschemas.jsonld | 4 +- data/skat/skatbioschemas.jsonld | 2 +- data/skelesim/skelesimbioschemas.jsonld | 8 +-- data/skewr/skewrbioschemas.jsonld | 8 +-- data/skink/skinkbioschemas.jsonld | 4 +- .../skipredundantbioschemas.jsonld | 8 +-- data/skipseq/skipseqbioschemas.jsonld | 10 ++-- data/skylign/skylignbioschemas.jsonld | 14 +++--- data/skyline/skylinebioschemas.jsonld | 4 +- data/slalom/slalombioschemas.jsonld | 4 +- data/slam-dunk/slam-dunkbioschemas.jsonld | 26 +++++----- data/slda/sldabioschemas.jsonld | 2 +- data/sleep/sleepbioschemas.jsonld | 14 +++--- data/sleepeegnet/sleepeegnetbioschemas.jsonld | 18 +++---- data/sleuth/sleuthbioschemas.jsonld | 4 +- data/slgi/slgibioschemas.jsonld | 8 +-- data/slicembler/slicemblerbioschemas.jsonld | 2 +- data/slide/slidebioschemas.jsonld | 6 +-- data/slider/sliderbioschemas.jsonld | 2 +- data/slim/slimbioschemas.jsonld | 16 +++--- .../slim_softwarebioschemas.jsonld | 4 +- data/slimarray/slimarraybioschemas.jsonld | 4 +- data/slimdisc/slimdiscbioschemas.jsonld | 4 +- data/slimfinder/slimfinderbioschemas.jsonld | 4 +- data/slimscape/slimscapebioschemas.jsonld | 18 +++---- data/slimsearch/slimsearchbioschemas.jsonld | 14 +++--- data/slimsuite/slimsuitebioschemas.jsonld | 8 +-- data/slink/slinkbioschemas.jsonld | 2 +- data/slinky/slinkybioschemas.jsonld | 4 +- data/sliq/sliqbioschemas.jsonld | 2 +- data/slither/slitherbioschemas.jsonld | 4 +- data/slmsuite/slmsuitebioschemas.jsonld | 10 ++-- data/slncky/slnckybioschemas.jsonld | 4 +- data/slope/slopebioschemas.jsonld | 2 +- data/slqpcr/slqpcrbioschemas.jsonld | 4 +- data/slr/slrbioschemas.jsonld | 2 +- data/sltchemdb/sltchemdbbioschemas.jsonld | 12 ++--- data/slush-biojs/slush-biojsbioschemas.jsonld | 4 +- data/smagexp/smagexpbioschemas.jsonld | 10 ++-- data/smal/smalbioschemas.jsonld | 4 +- .../smallanimalmrghifubioschemas.jsonld | 20 ++++---- .../smallgenometoolsbioschemas.jsonld | 4 +- data/smap/smapbioschemas.jsonld | 4 +- data/smarts/smartsbioschemas.jsonld | 2 +- data/smartscan/smartscanbioschemas.jsonld | 4 +- data/smirnadb/smirnadbbioschemas.jsonld | 4 +- data/smite/smitebioschemas.jsonld | 8 +-- data/smmrna/smmrnabioschemas.jsonld | 8 +-- data/smog/smogbioschemas.jsonld | 4 +- data/smoldyn/smoldynbioschemas.jsonld | 4 +- data/smolr/smolrbioschemas.jsonld | 12 ++--- data/smrt/smrtbioschemas.jsonld | 4 +- .../smrt_analysisbioschemas.jsonld | 8 +-- data/smrt_view/smrt_viewbioschemas.jsonld | 2 +- data/sms/smsbioschemas.jsonld | 4 +- data/smt-genetic/smt-geneticbioschemas.jsonld | 4 +- data/smurfs/smurfsbioschemas.jsonld | 2 +- data/smut/smutbioschemas.jsonld | 4 +- data/snakemake/snakemakebioschemas.jsonld | 4 +- data/snakepipes/snakepipesbioschemas.jsonld | 4 +- data/snapcgh/snapcghbioschemas.jsonld | 8 +-- data/snapr/snaprbioschemas.jsonld | 4 +- data/snipa/snipabioschemas.jsonld | 4 +- data/snippy/snippybioschemas.jsonld | 8 +-- data/snipviz/snipvizbioschemas.jsonld | 10 ++-- data/snm/snmbioschemas.jsonld | 20 ++++---- data/snmf/snmfbioschemas.jsonld | 10 ++-- data/snn-cliq/snn-cliqbioschemas.jsonld | 4 +- data/snogps/snogpsbioschemas.jsonld | 2 +- data/snomed_ct/snomed_ctbioschemas.jsonld | 8 +-- data/snoopcgh/snoopcghbioschemas.jsonld | 4 +- data/snooper/snooperbioschemas.jsonld | 14 +++--- .../snoopy_hybrid_simulatorbioschemas.jsonld | 10 ++-- data/snopy/snopybioschemas.jsonld | 8 +-- data/snoscan/snoscanbioschemas.jsonld | 4 +- data/snostrip/snostripbioschemas.jsonld | 4 +- data/snovault/snovaultbioschemas.jsonld | 4 +- data/snow/snowbioschemas.jsonld | 4 +- data/snp2sim/snp2simbioschemas.jsonld | 18 +++---- data/snp2tfbs/snp2tfbsbioschemas.jsonld | 4 +- data/snp_cutter/snp_cutterbioschemas.jsonld | 4 +- data/snpadomain/snpadomainbioschemas.jsonld | 2 +- data/snpassoc/snpassocbioschemas.jsonld | 4 +- data/snpator/snpatorbioschemas.jsonld | 12 ++--- data/snpbox/snpboxbioschemas.jsonld | 2 +- data/snpchip/snpchipbioschemas.jsonld | 4 +- data/snpdb/snpdbbioschemas.jsonld | 18 +++---- data/snpdelscore/snpdelscorebioschemas.jsonld | 4 +- data/snpduo/snpduobioschemas.jsonld | 4 +- data/snpedia/snpediabioschemas.jsonld | 4 +- data/snpediar/snpediarbioschemas.jsonld | 2 +- data/snpeff/snpeffbioschemas.jsonld | 4 +- data/snpeffect/snpeffectbioschemas.jsonld | 4 +- data/snpgenesets/snpgenesetsbioschemas.jsonld | 10 ++-- data/snpgenie/snpgeniebioschemas.jsonld | 4 +- data/snphood/snphoodbioschemas.jsonld | 2 +- data/snphub/snphubbioschemas.jsonld | 4 +- data/snpinfo/snpinfobioschemas.jsonld | 4 +- data/snpitty/snpittybioschemas.jsonld | 6 +-- data/snplice/snplicebioschemas.jsonld | 2 +- data/snpls/snplsbioschemas.jsonld | 4 +- data/snpnexus/snpnexusbioschemas.jsonld | 4 +- data/snprank/snprankbioschemas.jsonld | 4 +- data/snprelate/snprelatebioschemas.jsonld | 20 ++++---- data/snps_and_go/snps_and_gobioschemas.jsonld | 4 +- data/snpscan/snpscanbioschemas.jsonld | 2 +- data/snpspd/snpspdbioschemas.jsonld | 4 +- data/snpstats/snpstatsbioschemas.jsonld | 4 +- data/snpsti/snpstibioschemas.jsonld | 4 +- data/snpsyn/snpsynbioschemas.jsonld | 4 +- data/snptest/snptestbioschemas.jsonld | 4 +- data/snptracker/snptrackerbioschemas.jsonld | 8 +-- data/snptree/snptreebioschemas.jsonld | 4 +- data/snpversity/snpversitybioschemas.jsonld | 6 +-- data/snr/snrbioschemas.jsonld | 4 +- data/snsa/snsabioschemas.jsonld | 4 +- data/snv-ppilp/snv-ppilpbioschemas.jsonld | 4 +- data/snver/snverbioschemas.jsonld | 2 +- data/soapdenovo/soapdenovobioschemas.jsonld | 4 +- data/soapindel/soapindelbioschemas.jsonld | 14 +++--- data/soapsplice/soapsplicebioschemas.jsonld | 16 +++--- data/soba/sobabioschemas.jsonld | 4 +- .../social_networkbioschemas.jsonld | 16 +++--- data/socket/socketbioschemas.jsonld | 6 +-- data/sockeye/sockeyebioschemas.jsonld | 2 +- .../soda-solubilitybioschemas.jsonld | 4 +- data/soda/sodabioschemas.jsonld | 4 +- data/sofi/sofibioschemas.jsonld | 16 +++--- data/softpanel/softpanelbioschemas.jsonld | 4 +- data/soggi/soggibioschemas.jsonld | 4 +- data/soilgrids/soilgridsbioschemas.jsonld | 2 +- .../soilgrids250mbioschemas.jsonld | 4 +- .../solar-eclipsebioschemas.jsonld | 6 +-- data/solexaqa/solexaqabioschemas.jsonld | 4 +- data/solgs/solgsbioschemas.jsonld | 8 +-- data/solid2fastq/solid2fastqbioschemas.jsonld | 2 +- .../solid_qual_boxplotbioschemas.jsonld | 4 +- data/solr-plant/solr-plantbioschemas.jsonld | 22 ++++---- data/solubis/solubisbioschemas.jsonld | 4 +- data/som/sombioschemas.jsonld | 4 +- data/somart/somartbioschemas.jsonld | 4 +- .../somaticsignaturesbioschemas.jsonld | 14 +++--- data/sombrero/sombrerobioschemas.jsonld | 4 +- data/sominaclust/sominaclustbioschemas.jsonld | 4 +- data/somvarius/somvariusbioschemas.jsonld | 4 +- data/sonata/sonatabioschemas.jsonld | 2 +- .../sonicparanoidbioschemas.jsonld | 4 +- data/sopra/soprabioschemas.jsonld | 10 ++-- data/sorfs/sorfsbioschemas.jsonld | 8 +-- data/sort2/sort2bioschemas.jsonld | 4 +- data/sortgff/sortgffbioschemas.jsonld | 4 +- data/sortmerna/sortmernabioschemas.jsonld | 4 +- data/sos/sosbioschemas.jsonld | 10 ++-- data/source/sourcebioschemas.jsonld | 2 +- data/sourcer/sourcerbioschemas.jsonld | 4 +- data/sourmash/sourmashbioschemas.jsonld | 4 +- data/soybase/soybasebioschemas.jsonld | 2 +- data/soyfn/soyfnbioschemas.jsonld | 12 ++--- .../spaced_radiologybioschemas.jsonld | 12 ++--- .../spaced_wordsbioschemas.jsonld | 4 +- data/spacem3/spacem3bioschemas.jsonld | 4 +- data/spacepac/spacepacbioschemas.jsonld | 28 +++++------ data/spacer/spacerbioschemas.jsonld | 4 +- data/spades/spadesbioschemas.jsonld | 4 +- data/spads/spadsbioschemas.jsonld | 4 +- data/spang/spangbioschemas.jsonld | 6 +-- data/spaniel/spanielbioschemas.jsonld | 2 +- data/spar/sparbioschemas.jsonld | 4 +- data/sparc/sparcbioschemas.jsonld | 4 +- data/spark-cpvs/spark-cpvsbioschemas.jsonld | 4 +- data/spark-msna/spark-msnabioschemas.jsonld | 20 ++++---- data/spark-vs/spark-vsbioschemas.jsonld | 2 +- data/sparse/sparsebioschemas.jsonld | 42 ++++++++-------- data/sparsedossa/sparsedossabioschemas.jsonld | 8 +-- .../sparsesignaturesbioschemas.jsonld | 4 +- data/sparta/spartabioschemas.jsonld | 22 ++++---- data/spartaabc/spartaabcbioschemas.jsonld | 4 +- data/spartan/spartanbioschemas.jsonld | 12 ++--- data/spatialde/spatialdebioschemas.jsonld | 4 +- data/spatt/spattbioschemas.jsonld | 4 +- data/spatter/spatterbioschemas.jsonld | 4 +- data/spci/spcibioschemas.jsonld | 12 ++--- data/speaq/speaqbioschemas.jsonld | 4 +- data/speci/specibioschemas.jsonld | 10 ++-- data/specialize/specializebioschemas.jsonld | 4 +- .../species_delimitationbioschemas.jsonld | 2 +- data/specl/speclbioschemas.jsonld | 4 +- data/specond/specondbioschemas.jsonld | 4 +- data/spectrast/spectrastbioschemas.jsonld | 4 +- .../spectre-phylogenybioschemas.jsonld | 4 +- data/spectre/spectrebioschemas.jsonld | 14 +++--- .../spectrum_similaritybioschemas.jsonld | 8 +-- data/spedre/spedrebioschemas.jsonld | 4 +- .../speer-serverbioschemas.jsonld | 4 +- data/spell/spellbioschemas.jsonld | 4 +- data/spem/spembioschemas.jsonld | 8 +-- data/speplip/speplipbioschemas.jsonld | 4 +- data/spex2/spex2bioschemas.jsonld | 8 +-- data/spharm-pdm/spharm-pdmbioschemas.jsonld | 2 +- data/spia/spiabioschemas.jsonld | 8 +-- .../spice-classifybioschemas.jsonld | 8 +-- .../spider-barcodingbioschemas.jsonld | 4 +- data/spidermass/spidermassbioschemas.jsonld | 4 +- data/spidermir/spidermirbioschemas.jsonld | 8 +-- data/spike/spikebioschemas.jsonld | 4 +- data/spikeli/spikelibioschemas.jsonld | 8 +-- data/spin/spinbioschemas.jsonld | 12 ++--- .../spindel_workbenchbioschemas.jsonld | 4 +- data/spindlep/spindlepbioschemas.jsonld | 8 +-- .../spiral_geneticsbioschemas.jsonld | 4 +- data/spirpro/spirprobioschemas.jsonld | 6 +-- data/spktools/spktoolsbioschemas.jsonld | 4 +- data/spladder/spladderbioschemas.jsonld | 4 +- data/splatche3/splatche3bioschemas.jsonld | 8 +-- data/splatter/splatterbioschemas.jsonld | 4 +- data/spliceaid-f/spliceaid-fbioschemas.jsonld | 4 +- data/spliceaid/spliceaidbioschemas.jsonld | 4 +- .../splicedisease_dbbioschemas.jsonld | 4 +- data/splicegear/splicegearbioschemas.jsonld | 8 +-- .../splicegrapherbioschemas.jsonld | 4 +- .../splicemachinebioschemas.jsonld | 4 +- data/spliceogen/spliceogenbioschemas.jsonld | 4 +- data/spliceplot/spliceplotbioschemas.jsonld | 4 +- data/spliceport/spliceportbioschemas.jsonld | 2 +- data/splicer/splicerbioschemas.jsonld | 12 ++--- data/splicev/splicevbioschemas.jsonld | 14 +++--- .../splicing_expressbioschemas.jsonld | 4 +- .../splicinggraphsbioschemas.jsonld | 8 +-- .../splicingtypesannobioschemas.jsonld | 4 +- .../splicingviewerbioschemas.jsonld | 10 ++-- data/splinetimer/splinetimerbioschemas.jsonld | 6 +-- data/splinter/splinterbioschemas.jsonld | 4 +- data/split-gal4/split-gal4bioschemas.jsonld | 16 +++--- data/splitpocket/splitpocketbioschemas.jsonld | 4 +- data/splitsource/splitsourcebioschemas.jsonld | 12 ++--- data/splitter/splitterbioschemas.jsonld | 16 +++--- data/splots/splotsbioschemas.jsonld | 4 +- data/spm/spmbioschemas.jsonld | 4 +- data/spmm/spmmbioschemas.jsonld | 4 +- .../spnconverterbioschemas.jsonld | 2 +- data/sponge/spongebioschemas.jsonld | 4 +- data/spongescan/spongescanbioschemas.jsonld | 4 +- .../spot-seq-rnabioschemas.jsonld | 16 +++--- .../spot-struct-dnabioschemas.jsonld | 4 +- data/spot/spotbioschemas.jsonld | 4 +- data/spotcaliper/spotcaliperbioschemas.jsonld | 2 +- data/spotlight/spotlightbioschemas.jsonld | 4 +- data/spotlite/spotlitebioschemas.jsonld | 2 +- data/spotpy/spotpybioschemas.jsonld | 10 ++-- .../spotsegmentationbioschemas.jsonld | 6 +-- data/spotyping/spotypingbioschemas.jsonld | 8 +-- data/sppg/sppgbioschemas.jsonld | 2 +- data/sppider/sppiderbioschemas.jsonld | 4 +- data/spring/springbioschemas.jsonld | 8 +-- data/sprint-rna/sprint-rnabioschemas.jsonld | 4 +- data/sprite/spritebioschemas.jsonld | 4 +- data/spritz/spritzbioschemas.jsonld | 4 +- data/spurio/spuriobioschemas.jsonld | 12 ++--- data/sputnik/sputnikbioschemas.jsonld | 8 +-- data/sqtlseeker/sqtlseekerbioschemas.jsonld | 4 +- data/squadd/squaddbioschemas.jsonld | 4 +- data/squiggle/squigglebioschemas.jsonld | 4 +- data/sr-tesseler/sr-tesselerbioschemas.jsonld | 4 +- data/sra/srabioschemas.jsonld | 4 +- data/sradb/sradbbioschemas.jsonld | 4 +- data/sramp/srampbioschemas.jsonld | 4 +- data/srap/srapbioschemas.jsonld | 10 ++-- data/srcpred/srcpredbioschemas.jsonld | 2 +- data/srd/srdbioschemas.jsonld | 38 +++++++------- data/srda/srdabioschemas.jsonld | 4 +- data/srfim/srfimbioschemas.jsonld | 4 +- data/srgnet/srgnetbioschemas.jsonld | 4 +- data/sride/sridebioschemas.jsonld | 2 +- data/srinversion/srinversionbioschemas.jsonld | 4 +- data/srmstats/srmstatsbioschemas.jsonld | 4 +- .../srna_plant_portalbioschemas.jsonld | 4 +- data/srnabench/srnabenchbioschemas.jsonld | 20 ++++---- data/srnadiff/srnadiffbioschemas.jsonld | 4 +- data/srnatoolbox/srnatoolboxbioschemas.jsonld | 16 +++--- data/sroogle/srooglebioschemas.jsonld | 4 +- data/ssa/ssabioschemas.jsonld | 4 +- data/ssaha/ssahabioschemas.jsonld | 4 +- data/ssaha2/ssaha2bioschemas.jsonld | 16 +++--- data/ssahasnp/ssahasnpbioschemas.jsonld | 4 +- data/ssbio/ssbiobioschemas.jsonld | 4 +- data/sscore/sscorebioschemas.jsonld | 4 +- data/sscu/sscubioschemas.jsonld | 4 +- data/ssea/sseabioschemas.jsonld | 2 +- data/sseq/sseqbioschemas.jsonld | 8 +-- data/ssize/ssizebioschemas.jsonld | 8 +-- data/sspa/sspabioschemas.jsonld | 8 +-- data/sspred/sspredbioschemas.jsonld | 4 +- data/sspro/ssprobioschemas.jsonld | 8 +-- data/ssrcalc/ssrcalcbioschemas.jsonld | 4 +- data/sst/sstbioschemas.jsonld | 12 ++--- data/sstack/sstackbioschemas.jsonld | 4 +- data/sstructview/sstructviewbioschemas.jsonld | 4 +- data/ssviz/ssvizbioschemas.jsonld | 4 +- data/st_viewer/st_viewerbioschemas.jsonld | 4 +- data/stabs/stabsbioschemas.jsonld | 4 +- data/stac/stacbioschemas.jsonld | 10 ++-- data/stacks/stacksbioschemas.jsonld | 4 +- .../staden_io_libbioschemas.jsonld | 4 +- .../staden_packagebioschemas.jsonld | 4 +- data/stager/stagerbioschemas.jsonld | 4 +- data/stamp-3d/stamp-3dbioschemas.jsonld | 4 +- .../stamp-metagenomicbioschemas.jsonld | 4 +- data/stamp/stampbioschemas.jsonld | 2 +- data/stampy/stampybioschemas.jsonld | 14 +++--- .../stampy_mapperbioschemas.jsonld | 2 +- data/stan/stanbioschemas.jsonld | 20 ++++---- ...ed_velvet_assembly_reportbioschemas.jsonld | 4 +- data/stanex1/stanex1bioschemas.jsonld | 8 +-- .../stanfordmicroarraydbbioschemas.jsonld | 4 +- data/stap/stapbioschemas.jsonld | 4 +- .../star-genome-browserbioschemas.jsonld | 6 +-- data/star/starbioschemas.jsonld | 22 ++++---- data/starank/starankbioschemas.jsonld | 8 +-- data/starbiotrek/starbiotrekbioschemas.jsonld | 4 +- data/starmir/starmirbioschemas.jsonld | 4 +- data/starpdb/starpdbbioschemas.jsonld | 4 +- data/starr/starrbioschemas.jsonld | 6 +-- data/startscan/startscanbioschemas.jsonld | 4 +- data/statalign/statalignbioschemas.jsonld | 14 +++--- data/stategra/stategrabioschemas.jsonld | 4 +- data/stattarget/stattargetbioschemas.jsonld | 8 +-- data/stavrox/stavroxbioschemas.jsonld | 8 +-- data/steak/steakbioschemas.jsonld | 12 ++--- data/stego/stegobioschemas.jsonld | 2 +- data/stellar/stellarbioschemas.jsonld | 4 +- data/stells/stellsbioschemas.jsonld | 4 +- data/stemcellnet/stemcellnetbioschemas.jsonld | 14 +++--- data/stemchecker/stemcheckerbioschemas.jsonld | 28 +++++------ data/steps/stepsbioschemas.jsonld | 2 +- data/stepwisecm/stepwisecmbioschemas.jsonld | 8 +-- data/stereogene/stereogenebioschemas.jsonld | 4 +- data/stereomate/stereomatebioschemas.jsonld | 4 +- data/sti-gmas/sti-gmasbioschemas.jsonld | 4 +- .../sting_milleniumbioschemas.jsonld | 4 +- data/stingray/stingraybioschemas.jsonld | 10 ++-- data/stitch/stitchbioschemas.jsonld | 30 +++++------ .../stitchprofilesbioschemas.jsonld | 10 ++-- data/stochdecomp/stochdecompbioschemas.jsonld | 4 +- data/ston/stonbioschemas.jsonld | 4 +- data/stpm/stpmbioschemas.jsonld | 6 +-- data/stradwin/stradwinbioschemas.jsonld | 16 +++--- data/straininfo/straininfobioschemas.jsonld | 4 +- data/strand_ngs/strand_ngsbioschemas.jsonld | 8 +-- data/strap/strapbioschemas.jsonld | 2 +- data/straw/strawbioschemas.jsonld | 4 +- data/stream/streambioschemas.jsonld | 4 +- data/streamer/streamerbioschemas.jsonld | 4 +- .../stretcher-api-ebibioschemas.jsonld | 4 +- .../stretcher-ebibioschemas.jsonld | 4 +- data/stretcher/stretcherbioschemas.jsonld | 14 +++--- .../stretching_dnabioschemas.jsonld | 4 +- .../strictlyincludegffbioschemas.jsonld | 2 +- data/stride/stridebioschemas.jsonld | 4 +- data/string/stringbioschemas.jsonld | 2 +- data/stringapp/stringappbioschemas.jsonld | 26 +++++----- data/stringdb/stringdbbioschemas.jsonld | 10 ++-- .../stringgaussnetbioschemas.jsonld | 4 +- data/strmix/strmixbioschemas.jsonld | 4 +- data/strms/strmsbioschemas.jsonld | 4 +- data/struct2net/struct2netbioschemas.jsonld | 4 +- data/structalign/structalignbioschemas.jsonld | 4 +- data/structator/structatorbioschemas.jsonld | 4 +- .../structuprintbioschemas.jsonld | 14 +++--- .../structure-ppibioschemas.jsonld | 18 +++---- data/structure/structurebioschemas.jsonld | 4 +- .../structure_threaderbioschemas.jsonld | 4 +- .../structureprofilerbioschemas.jsonld | 4 +- data/strum/strumbioschemas.jsonld | 20 ++++---- data/stse/stsebioschemas.jsonld | 2 +- data/stsnp/stsnpbioschemas.jsonld | 4 +- data/stssearch/stssearchbioschemas.jsonld | 14 +++--- data/sub-gse/sub-gsebioschemas.jsonld | 4 +- data/suba3/suba3bioschemas.jsonld | 14 +++--- data/subacon/subaconbioschemas.jsonld | 4 +- data/subchlo/subchlobioschemas.jsonld | 4 +- data/subdyquency/subdyquencybioschemas.jsonld | 18 +++---- data/subjunc/subjuncbioschemas.jsonld | 4 +- .../subliminal_toolboxbioschemas.jsonld | 4 +- data/subpatcnv/subpatcnvbioschemas.jsonld | 18 +++---- data/subphospred/subphospredbioschemas.jsonld | 4 +- data/subread/subreadbioschemas.jsonld | 16 +++--- data/subseq/subseqbioschemas.jsonld | 8 +-- data/subseqer/subseqerbioschemas.jsonld | 2 +- data/subvis/subvisbioschemas.jsonld | 12 ++--- data/succfind/succfindbioschemas.jsonld | 4 +- data/sucos/sucosbioschemas.jsonld | 4 +- data/sugarbind/sugarbindbioschemas.jsonld | 4 +- .../sugarsketcherbioschemas.jsonld | 4 +- data/suitemsa/suitemsabioschemas.jsonld | 4 +- data/sumer/sumerbioschemas.jsonld | 2 +- data/sumher/sumherbioschemas.jsonld | 4 +- .../summarizedbenchmarkbioschemas.jsonld | 8 +-- .../summarizedexperimentbioschemas.jsonld | 4 +- data/summaryauc/summaryaucbioschemas.jsonld | 2 +- data/sumoamvr/sumoamvrbioschemas.jsonld | 4 +- data/sumstat/sumstatbioschemas.jsonld | 4 +- data/super-delta/super-deltabioschemas.jsonld | 8 +-- data/super/superbioschemas.jsonld | 2 +- data/supercyp/supercypbioschemas.jsonld | 8 +-- data/superfamily/superfamilybioschemas.jsonld | 4 +- data/superlooper/superlooperbioschemas.jsonld | 2 +- .../supermatcherbioschemas.jsonld | 8 +-- data/superpc/superpcbioschemas.jsonld | 4 +- data/superphy/superphybioschemas.jsonld | 10 ++-- data/superpose/superposebioschemas.jsonld | 2 +- data/superpose3d/superpose3dbioschemas.jsonld | 4 +- data/superpred/superpredbioschemas.jsonld | 8 +-- data/superq/superqbioschemas.jsonld | 2 +- .../superquantnodebioschemas.jsonld | 8 +-- data/supertarget/supertargetbioschemas.jsonld | 4 +- data/supertree/supertreebioschemas.jsonld | 4 +- data/suppa/suppabioschemas.jsonld | 12 ++--- data/suprahex/suprahexbioschemas.jsonld | 26 +++++----- data/suretypesc/suretypescbioschemas.jsonld | 4 +- data/surfcut/surfcutbioschemas.jsonld | 22 ++++---- data/surfy/surfybioschemas.jsonld | 4 +- data/surpresi/surpresibioschemas.jsonld | 4 +- data/survcomp/survcompbioschemas.jsonld | 12 ++--- data/survcurve/survcurvebioschemas.jsonld | 4 +- .../survgenesinterimbioschemas.jsonld | 4 +- .../survival_kitbioschemas.jsonld | 4 +- .../survivalgwas_powerbioschemas.jsonld | 4 +- .../survivalgwas_svbioschemas.jsonld | 6 +-- data/survmicro/survmicrobioschemas.jsonld | 4 +- data/survnet/survnetbioschemas.jsonld | 4 +- data/sushi/sushibioschemas.jsonld | 4 +- data/suspect-bdq/suspect-bdqbioschemas.jsonld | 4 +- data/sv-callers/sv-callersbioschemas.jsonld | 12 ++--- data/sva/svabioschemas.jsonld | 8 +-- data/svamp/svampbioschemas.jsonld | 30 +++++------ data/svapls/svaplsbioschemas.jsonld | 6 +-- data/svaplsseq/svaplsseqbioschemas.jsonld | 8 +-- data/svd-phy/svd-phybioschemas.jsonld | 4 +- ...t_bam_preprocessing_pairsbioschemas.jsonld | 4 +- .../svdetect_compare_stepbioschemas.jsonld | 4 +- ...vdetect_run_parallel_stepbioschemas.jsonld | 2 +- data/svist4get/svist4getbioschemas.jsonld | 14 +++--- data/svm-prot/svm-protbioschemas.jsonld | 4 +- data/svm-rne/svm-rnebioschemas.jsonld | 4 +- data/svm2/svm2bioschemas.jsonld | 4 +- data/svm2crm/svm2crmbioschemas.jsonld | 2 +- data/svmtm/svmtmbioschemas.jsonld | 4 +- data/svn/svnbioschemas.jsonld | 4 +- data/swakk/swakkbioschemas.jsonld | 4 +- data/swarmdock/swarmdockbioschemas.jsonld | 4 +- data/swath2stats/swath2statsbioschemas.jsonld | 20 ++++---- data/swathxtend/swathxtendbioschemas.jsonld | 4 +- data/swdmr/swdmrbioschemas.jsonld | 4 +- data/sweblast/sweblastbioschemas.jsonld | 4 +- data/sweed/sweedbioschemas.jsonld | 4 +- data/swepep/swepepbioschemas.jsonld | 4 +- data/swfdr/swfdrbioschemas.jsonld | 8 +-- data/swicz/swiczbioschemas.jsonld | 4 +- data/swift/swiftbioschemas.jsonld | 4 +- .../swiss-2dpagebioschemas.jsonld | 4 +- .../swiss-model_repositorybioschemas.jsonld | 8 +-- .../swiss-model_workspacebioschemas.jsonld | 24 ++++----- .../swiss-pdbviewerbioschemas.jsonld | 4 +- .../swiss_embnetbioschemas.jsonld | 4 +- .../swiss_mass_abacusbioschemas.jsonld | 4 +- data/swiss_model/swiss_modelbioschemas.jsonld | 4 +- data/swissadme/swissadmebioschemas.jsonld | 4 +- .../swissbioisosterebioschemas.jsonld | 4 +- data/swissdock/swissdockbioschemas.jsonld | 4 +- .../swissregulonbioschemas.jsonld | 4 +- .../swisssimilaritybioschemas.jsonld | 4 +- .../swisstargetpredictionbioschemas.jsonld | 4 +- data/swisstree/swisstreebioschemas.jsonld | 4 +- data/swissvar/swissvarbioschemas.jsonld | 26 +++++----- data/switchbox/switchboxbioschemas.jsonld | 24 ++++----- data/switchde/switchdebioschemas.jsonld | 8 +-- data/switchdna/switchdnabioschemas.jsonld | 4 +- .../sxoligosearchbioschemas.jsonld | 4 +- data/syapse/syapsebioschemas.jsonld | 4 +- .../sybil-metabolicbioschemas.jsonld | 4 +- data/syco/sycobioschemas.jsonld | 8 +-- data/sydseq/sydseqbioschemas.jsonld | 4 +- data/syfpeithi/syfpeithibioschemas.jsonld | 4 +- data/sylamer/sylamerbioschemas.jsonld | 4 +- data/sylarray/sylarraybioschemas.jsonld | 2 +- data/sylvx/sylvxbioschemas.jsonld | 4 +- data/symbiogbr/symbiogbrbioschemas.jsonld | 10 ++-- .../symbiogenomesdbbioschemas.jsonld | 16 +++--- data/symcurv/symcurvbioschemas.jsonld | 8 +-- data/symmdock/symmdockbioschemas.jsonld | 4 +- data/synapter/synapterbioschemas.jsonld | 20 ++++---- data/synbadm/synbadmbioschemas.jsonld | 2 +- .../syncx_ct_alignerbioschemas.jsonld | 4 +- data/synergizer/synergizerbioschemas.jsonld | 4 +- .../synergyfinderbioschemas.jsonld | 4 +- data/synfind/synfindbioschemas.jsonld | 16 +++--- data/synima/synimabioschemas.jsonld | 4 +- data/synlet/synletbioschemas.jsonld | 4 +- data/synlinker/synlinkerbioschemas.jsonld | 4 +- data/synor/synorbioschemas.jsonld | 2 +- data/syntarget/syntargetbioschemas.jsonld | 2 +- .../synteny_portalbioschemas.jsonld | 8 +-- data/syntren/syntrenbioschemas.jsonld | 4 +- data/synttax/synttaxbioschemas.jsonld | 12 ++--- data/syntview/syntviewbioschemas.jsonld | 22 ++++---- .../sysbio_modelica_librarybioschemas.jsonld | 12 ++--- data/systempiper/systempiperbioschemas.jsonld | 16 +++--- ...gical_collection_databasebioschemas.jsonld | 8 +-- data/t-lex2/t-lex2bioschemas.jsonld | 4 +- data/t-profiler/t-profilerbioschemas.jsonld | 4 +- .../t-reg_comparatorbioschemas.jsonld | 2 +- data/t-rex/t-rexbioschemas.jsonld | 2 +- data/t1dbase/t1dbasebioschemas.jsonld | 2 +- data/t346hunter/t346hunterbioschemas.jsonld | 8 +-- data/t3_mm/t3_mmbioschemas.jsonld | 4 +- data/t3db/t3dbbioschemas.jsonld | 4 +- data/t7/t7bioschemas.jsonld | 4 +- .../ta-si_predictionbioschemas.jsonld | 4 +- .../tableannotatorbioschemas.jsonld | 4 +- data/tableparser/tableparserbioschemas.jsonld | 2 +- data/tacs/tacsbioschemas.jsonld | 2 +- data/tactics/tacticsbioschemas.jsonld | 4 +- data/tadb/tadbbioschemas.jsonld | 2 +- data/tadtree/tadtreebioschemas.jsonld | 4 +- data/taec/taecbioschemas.jsonld | 4 +- data/taf/tafbioschemas.jsonld | 2 +- data/tag-db/tag-dbbioschemas.jsonld | 4 +- data/tagcleaner/tagcleanerbioschemas.jsonld | 2 +- data/tagcna/tagcnabioschemas.jsonld | 4 +- data/taggd/taggdbioschemas.jsonld | 4 +- data/taggraph/taggraphbioschemas.jsonld | 18 +++---- data/tagident/tagidentbioschemas.jsonld | 2 +- data/tagoos/tagoosbioschemas.jsonld | 2 +- data/tagtog/tagtogbioschemas.jsonld | 8 +-- data/taipan/taipanbioschemas.jsonld | 4 +- data/tair/tairbioschemas.jsonld | 2 +- data/takeabreak/takeabreakbioschemas.jsonld | 2 +- data/tale-nt/tale-ntbioschemas.jsonld | 4 +- data/talenoffer/talenofferbioschemas.jsonld | 4 +- data/tally/tallybioschemas.jsonld | 4 +- data/tammicol/tammicolbioschemas.jsonld | 20 ++++---- .../tango-nuclearbioschemas.jsonld | 12 ++--- data/tanric/tanricbioschemas.jsonld | 12 ++--- data/tapir/tapirbioschemas.jsonld | 4 +- data/tapir_cbs/tapir_cbsbioschemas.jsonld | 2 +- data/tappred/tappredbioschemas.jsonld | 2 +- data/tapyr/tapyrbioschemas.jsonld | 2 +- .../tara_blast_servicebioschemas.jsonld | 2 +- data/tarbase/tarbasebioschemas.jsonld | 24 ++++----- .../target_explorerbioschemas.jsonld | 4 +- .../targetatpsitebioschemas.jsonld | 8 +-- .../targetedretrievalbioschemas.jsonld | 4 +- data/targethub/targethubbioschemas.jsonld | 4 +- .../targetidentifierbioschemas.jsonld | 4 +- data/targetmine/targetminebioschemas.jsonld | 4 +- data/targetp/targetpbioschemas.jsonld | 12 ++--- data/targetrna/targetrnabioschemas.jsonld | 4 +- .../targets-mirnabioschemas.jsonld | 4 +- data/targets/targetsbioschemas.jsonld | 4 +- data/targetscore/targetscorebioschemas.jsonld | 6 +-- .../targetsearchbioschemas.jsonld | 8 +-- .../targetseqviewbioschemas.jsonld | 2 +- data/tarsvm/tarsvmbioschemas.jsonld | 6 +-- data/tarv/tarvbioschemas.jsonld | 4 +- data/tase/tasebioschemas.jsonld | 4 +- data/tassel/tasselbioschemas.jsonld | 8 +-- data/tasuke/tasukebioschemas.jsonld | 14 +++--- data/tatp/tatpbioschemas.jsonld | 12 ++--- data/taverna/tavernabioschemas.jsonld | 2 +- .../taverna_compbiobioschemas.jsonld | 2 +- data/tax2tree/tax2treebioschemas.jsonld | 4 +- data/tax4fun/tax4funbioschemas.jsonld | 4 +- data/taxa/taxabioschemas.jsonld | 4 +- data/taxget/taxgetbioschemas.jsonld | 10 ++-- data/taxgetdown/taxgetdownbioschemas.jsonld | 14 +++--- data/taxgetrank/taxgetrankbioschemas.jsonld | 10 ++-- .../taxgetspeciesbioschemas.jsonld | 14 +++--- data/taxgetup/taxgetupbioschemas.jsonld | 16 +++--- data/taxize/taxizebioschemas.jsonld | 20 ++++---- data/taxman/taxmanbioschemas.jsonld | 4 +- data/taxmapper/taxmapperbioschemas.jsonld | 16 +++--- ...taxonomic_metagenome_toolbioschemas.jsonld | 2 +- .../taxonomy_krona_chartbioschemas.jsonld | 4 +- .../taxonomy_summarybioschemas.jsonld | 4 +- .../taxoptimizerbioschemas.jsonld | 4 +- data/tbi/tbibioschemas.jsonld | 4 +- .../tbl2knowngenebioschemas.jsonld | 4 +- data/tcc/tccbioschemas.jsonld | 8 +-- data/tcdb/tcdbbioschemas.jsonld | 12 ++--- .../tcga-assemblerbioschemas.jsonld | 2 +- .../tcga-assembler_2bioschemas.jsonld | 4 +- data/tcga2stat/tcga2statbioschemas.jsonld | 2 +- data/tcga_api/tcga_apibioschemas.jsonld | 4 +- .../tcgabiolinksbioschemas.jsonld | 4 +- .../tcgabiolinksguibioschemas.jsonld | 8 +-- data/tcgautils/tcgautilsbioschemas.jsonld | 4 +- data/tcode/tcodebioschemas.jsonld | 12 ++--- data/tcof-db/tcof-dbbioschemas.jsonld | 8 +-- data/tcoffee/tcoffeebioschemas.jsonld | 4 +- data/tcoffee_ebi/tcoffee_ebibioschemas.jsonld | 8 +-- data/tcoffee_sib/tcoffee_sibbioschemas.jsonld | 30 +++++------ data/tcr/tcrbioschemas.jsonld | 14 +++--- data/tcre/tcrebioschemas.jsonld | 4 +- data/tcs-msa/tcs-msabioschemas.jsonld | 4 +- data/tcs/tcsbioschemas.jsonld | 4 +- data/tcsbu/tcsbubioschemas.jsonld | 4 +- data/tcseq/tcseqbioschemas.jsonld | 4 +- data/tdr_targets/tdr_targetsbioschemas.jsonld | 2 +- data/teak/teakbioschemas.jsonld | 4 +- data/team/teambioschemas.jsonld | 4 +- data/tebacten/tebactenbioschemas.jsonld | 4 +- data/tegs/tegsbioschemas.jsonld | 4 +- data/teiser/teiserbioschemas.jsonld | 4 +- .../telomerehunterbioschemas.jsonld | 20 ++++---- data/telometric/telometricbioschemas.jsonld | 4 +- data/tenet/tenetbioschemas.jsonld | 2 +- data/tenxplore/tenxplorebioschemas.jsonld | 4 +- data/tepitool/tepitoolbioschemas.jsonld | 2 +- data/teqc/teqcbioschemas.jsonld | 4 +- data/terapca/terapcabioschemas.jsonld | 4 +- .../terastitcherbioschemas.jsonld | 2 +- data/termine/terminebioschemas.jsonld | 2 +- data/terminus/terminusbioschemas.jsonld | 4 +- data/ternarynet/ternarynetbioschemas.jsonld | 22 ++++---- data/tesla/teslabioschemas.jsonld | 2 +- data/tess/tessbioschemas.jsonld | 2 +- data/testdose/testdosebioschemas.jsonld | 4 +- data/teststorm/teststormbioschemas.jsonld | 4 +- data/tetramito/tetramitobioschemas.jsonld | 8 +-- data/texmed/texmedbioschemas.jsonld | 4 +- data/textget/textgetbioschemas.jsonld | 12 ++--- data/textsearch/textsearchbioschemas.jsonld | 6 +-- data/tfarm/tfarmbioschemas.jsonld | 4 +- data/tfbind/tfbindbioschemas.jsonld | 4 +- data/tfbscluster/tfbsclusterbioschemas.jsonld | 4 +- data/tfbstools/tfbstoolsbioschemas.jsonld | 14 +++--- .../tfcheckpointbioschemas.jsonld | 4 +- data/tfextract/tfextractbioschemas.jsonld | 10 ++-- data/tfgd/tfgdbioschemas.jsonld | 4 +- data/tfhaz/tfhazbioschemas.jsonld | 4 +- .../tfm-explorerbioschemas.jsonld | 4 +- data/tfm/tfmbioschemas.jsonld | 10 ++-- data/tfmodeller/tfmodellerbioschemas.jsonld | 4 +- data/tfold/tfoldbioschemas.jsonld | 4 +- data/tfpredict/tfpredictbioschemas.jsonld | 2 +- data/tfscan/tfscanbioschemas.jsonld | 10 ++-- data/tfutils/tfutilsbioschemas.jsonld | 4 +- data/tgge-star/tgge-starbioschemas.jsonld | 4 +- data/tgnet/tgnetbioschemas.jsonld | 4 +- data/tgs-tb/tgs-tbbioschemas.jsonld | 4 +- data/the_ark/the_arkbioschemas.jsonld | 4 +- .../the_autophagy_databasebioschemas.jsonld | 4 +- .../the_chickpea_portalbioschemas.jsonld | 2 +- .../the_flux_capacitorbioschemas.jsonld | 8 +-- ...he_genetic_map_comparatorbioschemas.jsonld | 8 +-- data/the_grid/the_gridbioschemas.jsonld | 4 +- .../the_interactoriumbioschemas.jsonld | 4 +- .../the_ithanet_portalbioschemas.jsonld | 18 +++---- .../the_mendel_sitebioschemas.jsonld | 4 +- data/theme/themebioschemas.jsonld | 4 +- data/theorchromo/theorchromobioschemas.jsonld | 4 +- data/theorets/theoretsbioschemas.jsonld | 4 +- data/theospec/theospecbioschemas.jsonld | 2 +- .../thermo_msf_parserbioschemas.jsonld | 2 +- data/theseed/theseedbioschemas.jsonld | 4 +- .../thread_mapper_studiobioschemas.jsonld | 4 +- data/threadna/threadnabioschemas.jsonld | 8 +-- data/threadom/threadombioschemas.jsonld | 4 +- data/threadom_ex/threadom_exbioschemas.jsonld | 6 +-- .../three_to_onebioschemas.jsonld | 4 +- .../threshold-seqbioschemas.jsonld | 4 +- .../thunderstormbioschemas.jsonld | 4 +- data/thyme/thymebioschemas.jsonld | 4 +- data/tiara/tiarabioschemas.jsonld | 4 +- data/tibanna/tibannabioschemas.jsonld | 8 +-- data/tiddit/tidditbioschemas.jsonld | 4 +- data/tiger/tigerbioschemas.jsonld | 4 +- .../tigr_gene_indicesbioschemas.jsonld | 4 +- data/tigre/tigrebioschemas.jsonld | 8 +-- data/tigrfams/tigrfamsbioschemas.jsonld | 14 +++--- data/tilehmm/tilehmmbioschemas.jsonld | 4 +- data/tilingarray/tilingarraybioschemas.jsonld | 2 +- data/tilingscan/tilingscanbioschemas.jsonld | 4 +- data/timeclip/timeclipbioschemas.jsonld | 8 +-- data/timecourse/timecoursebioschemas.jsonld | 6 +-- data/timescape/timescapebioschemas.jsonld | 6 +-- .../timexnet_webbioschemas.jsonld | 4 +- data/tin/tinbioschemas.jsonld | 4 +- data/tipmt/tipmtbioschemas.jsonld | 18 +++---- data/tipp/tippbioschemas.jsonld | 4 +- data/tips/tipsbioschemas.jsonld | 2 +- data/tiquant/tiquantbioschemas.jsonld | 4 +- data/tisan/tisanbioschemas.jsonld | 4 +- .../tissueenrichbioschemas.jsonld | 4 +- data/tissues/tissuesbioschemas.jsonld | 6 +-- data/titancna/titancnabioschemas.jsonld | 26 +++++----- data/titindb/titindbbioschemas.jsonld | 4 +- data/tlinkage/tlinkagebioschemas.jsonld | 4 +- .../tls_motion_determinationbioschemas.jsonld | 2 +- data/tm-aligner/tm-alignerbioschemas.jsonld | 4 +- .../tma_navigatorbioschemas.jsonld | 2 +- data/tmaj/tmajbioschemas.jsonld | 2 +- data/tmap/tmapbioschemas.jsonld | 16 +++--- data/tmax/tmaxbioschemas.jsonld | 4 +- data/tmcrys/tmcrysbioschemas.jsonld | 4 +- .../tmh_benchmarkbioschemas.jsonld | 4 +- data/tmhcon/tmhconbioschemas.jsonld | 4 +- data/tmhhcp/tmhhcpbioschemas.jsonld | 4 +- data/tmhmm/tmhmmbioschemas.jsonld | 6 +-- data/tmkink/tmkinkbioschemas.jsonld | 2 +- data/tml-mp/tml-mpbioschemas.jsonld | 4 +- data/tmpad/tmpadbioschemas.jsonld | 2 +- data/tmpd/tmpdbioschemas.jsonld | 10 ++-- data/tmpred/tmpredbioschemas.jsonld | 4 +- data/tmseg/tmsegbioschemas.jsonld | 4 +- data/tmsoc/tmsocbioschemas.jsonld | 4 +- data/tmvar/tmvarbioschemas.jsonld | 14 +++--- data/tnt/tntbioschemas.jsonld | 4 +- data/toehold/toeholdbioschemas.jsonld | 2 +- data/toffee/toffeebioschemas.jsonld | 4 +- data/toggle/togglebioschemas.jsonld | 12 ++--- data/togogenome/togogenomebioschemas.jsonld | 14 +++--- data/togostanza/togostanzabioschemas.jsonld | 14 +++--- data/togotable/togotablebioschemas.jsonld | 4 +- .../tomato_genome_browserbioschemas.jsonld | 4 +- data/tome/tomebioschemas.jsonld | 4 +- data/tomoj/tomojbioschemas.jsonld | 18 +++---- data/tomominer/tomominerbioschemas.jsonld | 4 +- data/tomophantom/tomophantombioschemas.jsonld | 4 +- data/toner/tonerbioschemas.jsonld | 4 +- .../toolbox-romano-et-albioschemas.jsonld | 4 +- data/topas-nbio/topas-nbiobioschemas.jsonld | 16 +++--- data/topas/topasbioschemas.jsonld | 8 +-- data/topaseq/topaseqbioschemas.jsonld | 18 +++---- data/topconfects/topconfectsbioschemas.jsonld | 18 +++---- data/topcons/topconsbioschemas.jsonld | 4 +- data/topdb/topdbbioschemas.jsonld | 4 +- data/topfind/topfindbioschemas.jsonld | 4 +- data/topgo/topgobioschemas.jsonld | 2 +- data/tophat/tophatbioschemas.jsonld | 4 +- data/tophat2/tophat2bioschemas.jsonld | 4 +- data/topmatch/topmatchbioschemas.jsonld | 4 +- data/topo2/topo2bioschemas.jsonld | 4 +- data/topogsa/topogsabioschemas.jsonld | 4 +- data/topolink/topolinkbioschemas.jsonld | 4 +- data/topologygsa/topologygsabioschemas.jsonld | 10 ++-- data/toppcluster/toppclusterbioschemas.jsonld | 4 +- .../toppgene_suitebioschemas.jsonld | 4 +- data/toppic/toppicbioschemas.jsonld | 4 +- data/toppmir/toppmirbioschemas.jsonld | 4 +- data/topsearch/topsearchbioschemas.jsonld | 4 +- data/torque/torquebioschemas.jsonld | 2 +- data/totem/totembioschemas.jsonld | 12 ++--- data/toucan_2/toucan_2bioschemas.jsonld | 4 +- data/tp-db/tp-dbbioschemas.jsonld | 8 +-- data/tpes/tpesbioschemas.jsonld | 4 +- .../tpmcalculatorbioschemas.jsonld | 6 +-- data/tpp/tppbioschemas.jsonld | 4 +- data/tpwy/tpwybioschemas.jsonld | 4 +- data/tqdist/tqdistbioschemas.jsonld | 2 +- data/trace-rrbs/trace-rrbsbioschemas.jsonld | 2 +- data/tracembler/tracemblerbioschemas.jsonld | 4 +- data/tracer/tracerbioschemas.jsonld | 4 +- data/tracktables/tracktablesbioschemas.jsonld | 2 +- data/trackviewer/trackviewerbioschemas.jsonld | 2 +- data/tracmit/tracmitbioschemas.jsonld | 4 +- .../tractaviewerbioschemas.jsonld | 4 +- data/tractoflow/tractoflowbioschemas.jsonld | 4 +- data/trafac/trafacbioschemas.jsonld | 4 +- ...ainable_weka_segmentationbioschemas.jsonld | 4 +- data/traitar/traitarbioschemas.jsonld | 6 +-- .../traitratepropbioschemas.jsonld | 8 +-- data/tral/tralbioschemas.jsonld | 2 +- data/trample/tramplebioschemas.jsonld | 4 +- data/tranalign/tranalignbioschemas.jsonld | 6 +-- .../tranalign_ws_husarbioschemas.jsonld | 2 +- data/transalign/transalignbioschemas.jsonld | 4 +- data/transclust/transclustbioschemas.jsonld | 8 +-- .../transcriptogramerbioschemas.jsonld | 4 +- data/transcriptr/transcriptrbioschemas.jsonld | 6 +-- data/transeq/transeqbioschemas.jsonld | 18 +++---- data/transfind/transfindbioschemas.jsonld | 4 +- data/transfold/transfoldbioschemas.jsonld | 4 +- data/transit/transitbioschemas.jsonld | 4 +- data/translate/translatebioschemas.jsonld | 2 +- data/translatome/translatomebioschemas.jsonld | 8 +-- data/translatorx/translatorxbioschemas.jsonld | 4 +- data/translig/transligbioschemas.jsonld | 4 +- data/transposons/transposonsbioschemas.jsonld | 16 +++--- data/transview/transviewbioschemas.jsonld | 4 +- data/trapid/trapidbioschemas.jsonld | 4 +- data/trapline/traplinebioschemas.jsonld | 2 +- data/trapp/trappbioschemas.jsonld | 20 ++++---- data/trapr/traprbioschemas.jsonld | 16 +++--- data/traser/traserbioschemas.jsonld | 8 +-- data/trawlerweb/trawlerwebbioschemas.jsonld | 12 ++--- data/trc/trcbioschemas.jsonld | 4 +- data/trdistiller/trdistillerbioschemas.jsonld | 4 +- data/treat/treatbioschemas.jsonld | 2 +- .../treatable-idbioschemas.jsonld | 8 +-- data/tree-hmm/tree-hmmbioschemas.jsonld | 4 +- data/tree-puzzle/tree-puzzlebioschemas.jsonld | 4 +- data/treecon/treeconbioschemas.jsonld | 4 +- data/treedyn/treedynbioschemas.jsonld | 4 +- data/treeexp/treeexpbioschemas.jsonld | 8 +-- .../treegibbssamplerbioschemas.jsonld | 4 +- data/treegraph_2/treegraph_2bioschemas.jsonld | 2 +- data/treeio/treeiobioschemas.jsonld | 4 +- .../treejuxtaposerbioschemas.jsonld | 8 +-- data/treeko/treekobioschemas.jsonld | 2 +- data/treeld/treeldbioschemas.jsonld | 4 +- data/treeman/treemanbioschemas.jsonld | 16 +++--- data/treesaap/treesaapbioschemas.jsonld | 2 +- data/treesample/treesamplebioschemas.jsonld | 4 +- data/treesim/treesimbioschemas.jsonld | 4 +- data/treevis/treevisbioschemas.jsonld | 4 +- data/treewas/treewasbioschemas.jsonld | 4 +- data/tremap/tremapbioschemas.jsonld | 24 ++++----- data/trend/trendbioschemas.jsonld | 12 ++--- data/trendsceek/trendsceekbioschemas.jsonld | 4 +- data/trendy/trendybioschemas.jsonld | 4 +- data/trespex/trespexbioschemas.jsonld | 2 +- data/trf/trfbioschemas.jsonld | 4 +- data/tri_tool/tri_toolbioschemas.jsonld | 4 +- data/triagetools/triagetoolsbioschemas.jsonld | 4 +- data/trichdb/trichdbbioschemas.jsonld | 10 ++-- data/tridamp/tridampbioschemas.jsonld | 4 +- data/trifle/triflebioschemas.jsonld | 4 +- data/triform/triformbioschemas.jsonld | 14 +++--- data/trifusion/trifusionbioschemas.jsonld | 4 +- data/trigger/triggerbioschemas.jsonld | 4 +- data/trimadaptor/trimadaptorbioschemas.jsonld | 4 +- data/trimal/trimalbioschemas.jsonld | 4 +- data/trimest/trimestbioschemas.jsonld | 8 +-- data/trimitomics/trimitomicsbioschemas.jsonld | 8 +-- data/trimseq/trimseqbioschemas.jsonld | 18 +++---- .../trimsequencesbioschemas.jsonld | 4 +- data/trimspace/trimspacebioschemas.jsonld | 16 +++--- data/trinculo/trinculobioschemas.jsonld | 4 +- data/trinity/trinitybioschemas.jsonld | 4 +- data/trinotate/trinotatebioschemas.jsonld | 14 +++--- data/trio/triobioschemas.jsonld | 8 +-- data/triocaller/triocallerbioschemas.jsonld | 4 +- data/tripal/tripalbioschemas.jsonld | 12 ++--- .../tripal_elasticsearchbioschemas.jsonld | 4 +- data/triplex/triplexbioschemas.jsonld | 12 ++--- data/triplexrna/triplexrnabioschemas.jsonld | 4 +- data/tripoint/tripointbioschemas.jsonld | 4 +- data/tritex/tritexbioschemas.jsonld | 4 +- data/trnadb-ce/trnadb-cebioschemas.jsonld | 2 +- data/trnamodpred/trnamodpredbioschemas.jsonld | 8 +-- data/trnascan-se/trnascan-sebioschemas.jsonld | 4 +- .../trnascanimportbioschemas.jsonld | 4 +- data/trnaviz/trnavizbioschemas.jsonld | 6 +-- data/trod/trodbioschemas.jsonld | 4 +- data/trom/trombioschemas.jsonld | 16 +++--- data/tromer/tromerbioschemas.jsonld | 4 +- data/tronco/troncobioschemas.jsonld | 8 +-- data/trove/trovebioschemas.jsonld | 8 +-- data/trumpet/trumpetbioschemas.jsonld | 4 +- data/tscan/tscanbioschemas.jsonld | 4 +- data/tsdd/tsddbioschemas.jsonld | 2 +- data/tsema/tsemabioschemas.jsonld | 4 +- data/tsir/tsirbioschemas.jsonld | 4 +- data/tsis/tsisbioschemas.jsonld | 2 +- data/tsni/tsnibioschemas.jsonld | 4 +- data/tspair/tspairbioschemas.jsonld | 8 +-- data/tspmap/tspmapbioschemas.jsonld | 16 +++--- data/tsrchitect/tsrchitectbioschemas.jsonld | 2 +- data/tssar/tssarbioschemas.jsonld | 20 ++++---- data/tssv/tssvbioschemas.jsonld | 4 +- data/ttd/ttdbioschemas.jsonld | 4 +- data/tts_mapping/tts_mappingbioschemas.jsonld | 4 +- data/tuberq/tuberqbioschemas.jsonld | 12 ++--- data/tuiuiu/tuiuiubioschemas.jsonld | 4 +- data/tulip/tulipbioschemas.jsonld | 4 +- data/tumorcnv/tumorcnvbioschemas.jsonld | 4 +- data/tumorhpd/tumorhpdbioschemas.jsonld | 4 +- data/turbonorm/turbonormbioschemas.jsonld | 4 +- data/turf-e/turf-ebioschemas.jsonld | 4 +- data/tvt_viewer/tvt_viewerbioschemas.jsonld | 4 +- data/tvtb/tvtbbioschemas.jsonld | 8 +-- data/tweedeseq/tweedeseqbioschemas.jsonld | 18 +++---- data/twigs/twigsbioschemas.jsonld | 4 +- .../twilight-ligandbioschemas.jsonld | 4 +- data/twilight/twilightbioschemas.jsonld | 4 +- data/twinscan/twinscanbioschemas.jsonld | 4 +- data/twoddpcr/twoddpcrbioschemas.jsonld | 6 +-- data/twofeat/twofeatbioschemas.jsonld | 16 +++--- data/tximport/tximportbioschemas.jsonld | 20 ++++---- data/txreginfra/txreginfrabioschemas.jsonld | 2 +- data/tygs/tygsbioschemas.jsonld | 24 ++++----- data/tyna/tynabioschemas.jsonld | 2 +- data/typeinfo/typeinfobioschemas.jsonld | 4 +- data/ualcan/ualcanbioschemas.jsonld | 8 +-- data/ub-isap/ub-isapbioschemas.jsonld | 12 ++--- data/ubine/ubinebioschemas.jsonld | 8 +-- data/ubisite/ubisitebioschemas.jsonld | 12 ++--- .../ucl_web_servicesbioschemas.jsonld | 4 +- ...c_cancer_genomics_browserbioschemas.jsonld | 4 +- .../ucsc_genome_browserbioschemas.jsonld | 34 ++++++------- ..._genome_browser_utilitiesbioschemas.jsonld | 4 +- .../ucsc_interaction_browserbioschemas.jsonld | 4 +- data/ufboot2/ufboot2bioschemas.jsonld | 2 +- data/ugahash/ugahashbioschemas.jsonld | 4 +- data/ugene/ugenebioschemas.jsonld | 4 +- data/uicluster/uiclusterbioschemas.jsonld | 4 +- data/ukbtools/ukbtoolsbioschemas.jsonld | 22 ++++---- data/ukpmc/ukpmcbioschemas.jsonld | 2 +- data/ultra/ultrabioschemas.jsonld | 10 ++-- data/ultrapse/ultrapsebioschemas.jsonld | 14 +++--- data/ulysses/ulyssesbioschemas.jsonld | 4 +- .../umd-predictorbioschemas.jsonld | 4 +- data/umd/umdbioschemas.jsonld | 4 +- data/umi-tools/umi-toolsbioschemas.jsonld | 14 +++--- data/umx/umxbioschemas.jsonld | 4 +- data/unafold/unafoldbioschemas.jsonld | 4 +- data/unccombo/unccombobioschemas.jsonld | 6 +-- data/unceqr/unceqrbioschemas.jsonld | 4 +- data/uncover/uncoverbioschemas.jsonld | 12 ++--- data/undo/undobioschemas.jsonld | 4 +- data/unfold/unfoldbioschemas.jsonld | 4 +- data/unialign/unialignbioschemas.jsonld | 4 +- data/unicarb-db/unicarb-dbbioschemas.jsonld | 4 +- data/unicarbkb/unicarbkbbioschemas.jsonld | 14 +++--- data/unicycler/unicyclerbioschemas.jsonld | 14 +++--- .../unifiedwmwqpcrbioschemas.jsonld | 4 +- data/unigene/unigenebioschemas.jsonld | 2 +- data/unimod/unimodbioschemas.jsonld | 4 +- data/unimog/unimogbioschemas.jsonld | 2 +- data/uninovo/uninovobioschemas.jsonld | 6 +-- data/union/unionbioschemas.jsonld | 14 +++--- data/uniparc/uniparcbioschemas.jsonld | 4 +- data/unipept/unipeptbioschemas.jsonld | 4 +- data/unipept_cli/unipept_clibioschemas.jsonld | 4 +- .../unipept_visualizationsbioschemas.jsonld | 4 +- data/uniprobe/uniprobebioschemas.jsonld | 4 +- .../uniprot_alignbioschemas.jsonld | 8 +-- .../uniprot_blastbioschemas.jsonld | 4 +- .../uniprot_id_mappingbioschemas.jsonld | 4 +- .../uniprotkb_swiss-protbioschemas.jsonld | 4 +- data/uniquorn/uniquornbioschemas.jsonld | 6 +-- data/unitas/unitasbioschemas.jsonld | 8 +-- data/unite_rdna/unite_rdnabioschemas.jsonld | 2 +- data/unitrap/unitrapbioschemas.jsonld | 4 +- .../universal_ttssbioschemas.jsonld | 12 ++--- data/unoseq/unoseqbioschemas.jsonld | 4 +- data/unravel/unravelbioschemas.jsonld | 4 +- data/upb/upbbioschemas.jsonld | 4 +- data/upf/upfbioschemas.jsonld | 4 +- data/upic/upicbioschemas.jsonld | 4 +- data/uproc/uprocbioschemas.jsonld | 4 +- data/uqlust/uqlustbioschemas.jsonld | 4 +- data/urlget/urlgetbioschemas.jsonld | 12 ++--- data/ursgal/ursgalbioschemas.jsonld | 4 +- data/usearch/usearchbioschemas.jsonld | 4 +- data/usort/usortbioschemas.jsonld | 8 +-- data/usr-vs/usr-vsbioschemas.jsonld | 4 +- data/utap/utapbioschemas.jsonld | 10 ++-- .../utgb_toolkitbioschemas.jsonld | 4 +- data/utrdb/utrdbbioschemas.jsonld | 4 +- data/utrsite/utrsitebioschemas.jsonld | 4 +- data/uvp/uvpbioschemas.jsonld | 8 +-- data/v-pipe/v-pipebioschemas.jsonld | 20 ++++---- data/vaccimm/vaccimmbioschemas.jsonld | 6 +-- data/vacsol/vacsolbioschemas.jsonld | 20 ++++---- data/vadar/vadarbioschemas.jsonld | 4 +- data/valfold/valfoldbioschemas.jsonld | 4 +- data/validatordb/validatordbbioschemas.jsonld | 10 ++-- data/valtrendsdb/valtrendsdbbioschemas.jsonld | 4 +- .../valworkbenchbioschemas.jsonld | 4 +- data/vampire/vampirebioschemas.jsonld | 4 +- data/vamps/vampsbioschemas.jsonld | 14 +++--- .../vancomycin_tdmbioschemas.jsonld | 10 ++-- data/vanesa/vanesabioschemas.jsonld | 4 +- data/vanillaice/vanillaicebioschemas.jsonld | 20 ++++---- data/vanno/vannobioschemas.jsonld | 4 +- data/vanted/vantedbioschemas.jsonld | 4 +- data/vap/vapbioschemas.jsonld | 4 +- data/vapros/vaprosbioschemas.jsonld | 8 +-- data/vardetect/vardetectbioschemas.jsonld | 4 +- data/vargenius/vargeniusbioschemas.jsonld | 14 +++--- .../variancepartitionbioschemas.jsonld | 16 +++--- data/variant/variantbioschemas.jsonld | 10 ++-- ...n_pathogenicity_predictorbioschemas.jsonld | 12 ++--- .../variant_rankerbioschemas.jsonld | 14 +++--- .../variant_score_rankerbioschemas.jsonld | 4 +- .../variantannotationbioschemas.jsonld | 8 +-- .../variantclassifierbioschemas.jsonld | 4 +- .../variantfilteringbioschemas.jsonld | 6 +-- .../variantmetacallerbioschemas.jsonld | 4 +- .../varianttoolsbioschemas.jsonld | 4 +- ...nal_bayes_approach_geminibioschemas.jsonld | 2 +- .../variationgetbioschemas.jsonld | 12 ++--- data/varibench/varibenchbioschemas.jsonld | 2 +- data/varid/varidbioschemas.jsonld | 4 +- data/variobox/varioboxbioschemas.jsonld | 4 +- data/variowatch/variowatchbioschemas.jsonld | 4 +- data/varmap/varmapbioschemas.jsonld | 2 +- data/varmod/varmodbioschemas.jsonld | 4 +- data/varprism/varprismbioschemas.jsonld | 6 +-- data/varscan/varscanbioschemas.jsonld | 4 +- data/varsifter/varsifterbioschemas.jsonld | 4 +- data/varsome/varsomebioschemas.jsonld | 4 +- data/vas/vasbioschemas.jsonld | 2 +- data/vasp/vaspbioschemas.jsonld | 6 +-- data/vast/vastbioschemas.jsonld | 4 +- data/vastdb/vastdbbioschemas.jsonld | 4 +- data/vat/vatbioschemas.jsonld | 12 ++--- data/vbmp/vbmpbioschemas.jsonld | 8 +-- data/vcf-server/vcf-serverbioschemas.jsonld | 22 ++++---- .../vcf_consensusbioschemas.jsonld | 4 +- .../vcf_remove_filteredbioschemas.jsonld | 4 +- .../vcf_substractbioschemas.jsonld | 4 +- data/vcffilterjs/vcffilterjsbioschemas.jsonld | 8 +-- data/vcfhead/vcfheadbioschemas.jsonld | 4 +- data/vcflib/vcflibbioschemas.jsonld | 4 +- data/vcfr/vcfrbioschemas.jsonld | 4 +- data/vcftools/vcftoolsbioschemas.jsonld | 16 +++--- data/vcftotree/vcftotreebioschemas.jsonld | 2 +- data/vcfutils/vcfutilsbioschemas.jsonld | 4 +- data/vcnet/vcnetbioschemas.jsonld | 4 +- data/vcpa/vcpabioschemas.jsonld | 4 +- data/vdjpuzzle/vdjpuzzlebioschemas.jsonld | 4 +- data/vdjsolver/vdjsolverbioschemas.jsonld | 4 +- data/vdjviz/vdjvizbioschemas.jsonld | 8 +-- data/vect/vectbioschemas.jsonld | 4 +- data/vectorbase/vectorbasebioschemas.jsonld | 8 +-- data/vectornti/vectorntibioschemas.jsonld | 4 +- data/vectorstrip/vectorstripbioschemas.jsonld | 14 +++--- data/vega/vegabioschemas.jsonld | 8 +-- .../vega_annotation_browserbioschemas.jsonld | 4 +- data/vegamc/vegamcbioschemas.jsonld | 4 +- data/vegas2/vegas2bioschemas.jsonld | 8 +-- data/velvet/velvetbioschemas.jsonld | 4 +- .../velvetoptimiserbioschemas.jsonld | 4 +- .../venn_diagramsbioschemas.jsonld | 4 +- data/vennpainter/vennpainterbioschemas.jsonld | 16 +++--- data/vep/vepbioschemas.jsonld | 10 ++-- data/verifybamid/verifybamidbioschemas.jsonld | 4 +- data/verina3d/verina3dbioschemas.jsonld | 6 +-- data/vermont/vermontbioschemas.jsonld | 4 +- data/veselect/veselectbioschemas.jsonld | 4 +- .../vesiclepediabioschemas.jsonld | 4 +- data/vespa/vespabioschemas.jsonld | 4 +- data/vexor/vexorbioschemas.jsonld | 4 +- data/vfdb/vfdbbioschemas.jsonld | 4 +- data/vga/vgabioschemas.jsonld | 4 +- data/vhldb/vhldbbioschemas.jsonld | 8 +-- data/vica/vicabioschemas.jsonld | 4 +- data/vicmpred/vicmpredbioschemas.jsonld | 4 +- data/victor/victorbioschemas.jsonld | 4 +- data/vida/vidabioschemas.jsonld | 4 +- data/vidger/vidgerbioschemas.jsonld | 2 +- data/vidjil/vidjilbioschemas.jsonld | 8 +-- data/vienna-ptm/vienna-ptmbioschemas.jsonld | 4 +- .../vienna_rna_packagebioschemas.jsonld | 4 +- .../vienna_rna_websuitebioschemas.jsonld | 2 +- data/viennngs/viennngsbioschemas.jsonld | 30 +++++------ data/ving/vingbioschemas.jsonld | 8 +-- data/viper/viperbioschemas.jsonld | 8 +-- data/viperdb/viperdbbioschemas.jsonld | 12 ++--- data/vipr/viprbioschemas.jsonld | 18 +++---- data/viralmbd/viralmbdbioschemas.jsonld | 4 +- data/viralmir/viralmirbioschemas.jsonld | 2 +- .../viralorfeomebioschemas.jsonld | 6 +-- data/viralphos/viralphosbioschemas.jsonld | 4 +- data/viralpro/viralprobioschemas.jsonld | 4 +- data/viralzone/viralzonebioschemas.jsonld | 18 +++---- data/viramp/virampbioschemas.jsonld | 4 +- data/virapipe/virapipebioschemas.jsonld | 4 +- data/virhostnet/virhostnetbioschemas.jsonld | 2 +- data/viromescan/viromescanbioschemas.jsonld | 12 ++--- data/virsirnadb/virsirnadbbioschemas.jsonld | 4 +- ...ructural_biology_projectsbioschemas.jsonld | 2 +- .../virtual_pharmacistbioschemas.jsonld | 8 +-- .../virtual_ribosomebioschemas.jsonld | 4 +- .../virtualscreeningbioschemas.jsonld | 4 +- .../virus_genotyping_toolsbioschemas.jsonld | 2 +- data/virusbanker/virusbankerbioschemas.jsonld | 2 +- data/virusmentha/virusmenthabioschemas.jsonld | 12 ++--- data/virusmint/virusmintbioschemas.jsonld | 18 +++---- data/virusseq/virusseqbioschemas.jsonld | 4 +- data/visant/visantbioschemas.jsonld | 4 +- data/viscose/viscosebioschemas.jsonld | 4 +- data/visen/visenbioschemas.jsonld | 2 +- data/vishic/vishicbioschemas.jsonld | 2 +- data/visinets/visinetsbioschemas.jsonld | 18 +++---- data/visionet/visionetbioschemas.jsonld | 2 +- data/vispig/vispigbioschemas.jsonld | 12 ++--- data/visr/visrbioschemas.jsonld | 4 +- data/vissr/vissrbioschemas.jsonld | 2 +- data/vista/vistabioschemas.jsonld | 8 +-- .../vista_enhancer_browserbioschemas.jsonld | 14 +++--- .../vistrajectorybioschemas.jsonld | 2 +- data/visualcna/visualcnabioschemas.jsonld | 4 +- data/vitapad/vitapadbioschemas.jsonld | 4 +- data/vitram/vitrambioschemas.jsonld | 4 +- data/vivaldi/vivaldibioschemas.jsonld | 4 +- data/vivan/vivanbioschemas.jsonld | 4 +- data/vivaxgen/vivaxgenbioschemas.jsonld | 14 +++--- data/vizardous/vizardousbioschemas.jsonld | 4 +- data/vizgvar/vizgvarbioschemas.jsonld | 4 +- data/vizstruct/vizstructbioschemas.jsonld | 4 +- data/vkcdb/vkcdbbioschemas.jsonld | 4 +- data/vldp/vldpbioschemas.jsonld | 6 +-- data/vmcmc/vmcmcbioschemas.jsonld | 12 ++--- data/vmh/vmhbioschemas.jsonld | 12 ++--- data/vntrfinder/vntrfinderbioschemas.jsonld | 4 +- data/vocs/vocsbioschemas.jsonld | 4 +- data/voe/voebioschemas.jsonld | 4 +- data/vogdb/vogdbbioschemas.jsonld | 4 +- data/void_editor/void_editorbioschemas.jsonld | 4 +- data/volarea/volareabioschemas.jsonld | 2 +- data/volocity/volocitybioschemas.jsonld | 4 +- data/volpes/volpesbioschemas.jsonld | 24 ++++----- data/vpac/vpacbioschemas.jsonld | 12 ++--- data/vphylomm/vphylommbioschemas.jsonld | 4 +- data/vplg/vplgbioschemas.jsonld | 4 +- data/vsdmip/vsdmipbioschemas.jsonld | 4 +- data/vseams/vseamsbioschemas.jsonld | 4 +- data/vsearch/vsearchbioschemas.jsonld | 4 +- data/vsn/vsnbioschemas.jsonld | 4 +- data/vtbuilder/vtbuilderbioschemas.jsonld | 4 +- data/vtpnet/vtpnetbioschemas.jsonld | 2 +- data/vulcan/vulcanbioschemas.jsonld | 18 +++---- data/vulcanspot/vulcanspotbioschemas.jsonld | 4 +- .../w-chipmotifsbioschemas.jsonld | 4 +- data/w-iq-tree/w-iq-treebioschemas.jsonld | 12 ++--- data/w3dna/w3dnabioschemas.jsonld | 12 ++--- data/w4cseq/w4cseqbioschemas.jsonld | 10 ++-- data/waffect/waffectbioschemas.jsonld | 2 +- data/waggawagga/waggawaggabioschemas.jsonld | 4 +- data/war/warbioschemas.jsonld | 4 +- data/warpgroup/warpgroupbioschemas.jsonld | 4 +- data/wasabi/wasabibioschemas.jsonld | 4 +- data/wasp/waspbioschemas.jsonld | 18 +++---- data/watclust/watclustbioschemas.jsonld | 4 +- data/water-ebi/water-ebibioschemas.jsonld | 4 +- data/water/waterbioschemas.jsonld | 6 +-- .../water_api-ebibioschemas.jsonld | 4 +- data/watermelon/watermelonbioschemas.jsonld | 26 +++++----- data/wattos/wattosbioschemas.jsonld | 2 +- data/wavcluster/wavclusterbioschemas.jsonld | 32 ++++++------ data/wave-crest/wave-crestbioschemas.jsonld | 8 +-- data/waveread/wavereadbioschemas.jsonld | 4 +- data/waveseqr/waveseqrbioschemas.jsonld | 4 +- data/wavis/wavisbioschemas.jsonld | 4 +- data/wclique/wcliquebioschemas.jsonld | 2 +- data/wdac/wdacbioschemas.jsonld | 4 +- data/wdl-rf/wdl-rfbioschemas.jsonld | 4 +- data/weaver/weaverbioschemas.jsonld | 8 +-- data/web-beagle/web-beaglebioschemas.jsonld | 26 +++++----- data/web-rmkl/web-rmklbioschemas.jsonld | 18 +++---- data/web3dmol/web3dmolbioschemas.jsonld | 14 +++--- data/web_3dna/web_3dnabioschemas.jsonld | 8 +-- data/web_weeder/web_weederbioschemas.jsonld | 2 +- data/webapollo/webapollobioschemas.jsonld | 4 +- data/webaugustus/webaugustusbioschemas.jsonld | 2 +- data/webbioc/webbiocbioschemas.jsonld | 8 +-- data/webcmd/webcmdbioschemas.jsonld | 4 +- data/webfr3d/webfr3dbioschemas.jsonld | 4 +- data/webgestalt/webgestaltbioschemas.jsonld | 8 +-- .../webgester_dbbioschemas.jsonld | 4 +- data/webgivi/webgivibioschemas.jsonld | 16 +++--- data/webikey/webikeybioschemas.jsonld | 8 +-- data/webknossos/webknossosbioschemas.jsonld | 4 +- data/weblab/weblabbioschemas.jsonld | 4 +- data/weblogo/weblogobioschemas.jsonld | 4 +- data/weblogo_3/weblogo_3bioschemas.jsonld | 12 ++--- data/webmetabase/webmetabasebioschemas.jsonld | 8 +-- data/webmotifs/webmotifsbioschemas.jsonld | 4 +- data/webnma/webnmabioschemas.jsonld | 18 +++---- data/webprank/webprankbioschemas.jsonld | 4 +- data/webprc/webprcbioschemas.jsonld | 4 +- data/webprinses/webprinsesbioschemas.jsonld | 4 +- .../webproanalystbioschemas.jsonld | 4 +- data/webrtc/webrtcbioschemas.jsonld | 4 +- data/websat/websatbioschemas.jsonld | 4 +- data/webscipio/webscipiobioschemas.jsonld | 2 +- data/weeder/weederbioschemas.jsonld | 4 +- data/weget/wegetbioschemas.jsonld | 4 +- data/weighbor/weighborbioschemas.jsonld | 6 +-- .../weighted_fdrbioschemas.jsonld | 4 +- .../wellinverterbioschemas.jsonld | 22 ++++---- .../wenmr_gromacsbioschemas.jsonld | 2 +- data/wft4galaxy/wft4galaxybioschemas.jsonld | 4 +- data/wgaviewer/wgaviewerbioschemas.jsonld | 4 +- data/wgcna/wgcnabioschemas.jsonld | 4 +- data/wgddetector/wgddetectorbioschemas.jsonld | 12 ++--- data/wge/wgebioschemas.jsonld | 4 +- data/whamm/whammbioschemas.jsonld | 4 +- data/what_if/what_ifbioschemas.jsonld | 4 +- data/whatizit/whatizitbioschemas.jsonld | 6 +-- .../wheat_genomebioschemas.jsonld | 4 +- .../wheat_zapperbioschemas.jsonld | 4 +- data/whichcyp/whichcypbioschemas.jsonld | 4 +- data/whichdb/whichdbbioschemas.jsonld | 12 ++--- data/whichgenes/whichgenesbioschemas.jsonld | 4 +- data/whiteboard/whiteboardbioschemas.jsonld | 2 +- data/whopgenome/whopgenomebioschemas.jsonld | 4 +- data/widgettools/widgettoolsbioschemas.jsonld | 6 +-- data/wiggleplotr/wiggleplotrbioschemas.jsonld | 2 +- .../wikipathwaysbioschemas.jsonld | 12 ++--- .../wikipathways_appbioschemas.jsonld | 14 +++--- data/wisard/wisardbioschemas.jsonld | 2 +- data/wiws/wiwsbioschemas.jsonld | 2 +- data/wkinmut/wkinmutbioschemas.jsonld | 4 +- data/wlake/wlakebioschemas.jsonld | 4 +- data/wmap/wmapbioschemas.jsonld | 4 +- data/wmaxc/wmaxcbioschemas.jsonld | 4 +- data/wnv_typer/wnv_typerbioschemas.jsonld | 4 +- data/wobble/wobblebioschemas.jsonld | 12 ++--- data/wolf_psort/wolf_psortbioschemas.jsonld | 4 +- data/wombat/wombatbioschemas.jsonld | 12 ++--- data/wonka/wonkabioschemas.jsonld | 4 +- data/wordcount/wordcountbioschemas.jsonld | 12 ++--- data/wordfinder/wordfinderbioschemas.jsonld | 8 +-- data/wordmatch/wordmatchbioschemas.jsonld | 14 +++--- data/worfdb/worfdbbioschemas.jsonld | 16 +++--- .../workflow4metabolomicsbioschemas.jsonld | 4 +- .../world-2dpagebioschemas.jsonld | 4 +- .../world_cancer_mapbioschemas.jsonld | 14 +++--- data/wormgender/wormgenderbioschemas.jsonld | 2 +- data/wormhole/wormholebioschemas.jsonld | 4 +- data/wormnet_v3/wormnet_v3bioschemas.jsonld | 4 +- data/worms/wormsbioschemas.jsonld | 4 +- data/wossdata/wossdatabioschemas.jsonld | 10 ++-- data/wossinput/wossinputbioschemas.jsonld | 16 +++--- data/wossname/wossnamebioschemas.jsonld | 4 +- .../wossoperationbioschemas.jsonld | 18 +++---- data/wossoutput/wossoutputbioschemas.jsonld | 14 +++--- data/wossparam/wossparambioschemas.jsonld | 18 +++---- data/wosstopic/wosstopicbioschemas.jsonld | 18 +++---- .../wrap_n_shakebioschemas.jsonld | 2 +- .../writerestohtmlbioschemas.jsonld | 4 +- .../ws_snps_and_gobioschemas.jsonld | 20 ++++---- .../wsgobiospacebioschemas.jsonld | 2 +- .../wslibrarysearchbioschemas.jsonld | 2 +- .../wspredictionbioschemas.jsonld | 4 +- data/wssas/wssasbioschemas.jsonld | 4 +- data/wtfgenes/wtfgenesbioschemas.jsonld | 4 +- data/wu-crispr/wu-crisprbioschemas.jsonld | 4 +- data/wurst/wurstbioschemas.jsonld | 4 +- data/wwligcsrre/wwligcsrrebioschemas.jsonld | 4 +- data/x2h/x2hbioschemas.jsonld | 10 ++-- data/x2k/x2kbioschemas.jsonld | 2 +- data/xanthusbase/xanthusbasebioschemas.jsonld | 4 +- data/xbseq/xbseqbioschemas.jsonld | 4 +- data/xcavator/xcavatorbioschemas.jsonld | 14 +++--- data/xcellerator/xcelleratorbioschemas.jsonld | 4 +- .../xchemexplorerbioschemas.jsonld | 6 +-- data/xcms/xcmsbioschemas.jsonld | 16 +++--- data/xcms_online/xcms_onlinebioschemas.jsonld | 4 +- data/xde/xdebioschemas.jsonld | 22 ++++---- data/xeml-lab/xeml-labbioschemas.jsonld | 12 ++--- data/xenbase/xenbasebioschemas.jsonld | 4 +- data/xenogi/xenogibioschemas.jsonld | 12 ++--- data/xeva/xevabioschemas.jsonld | 4 +- data/xgr/xgrbioschemas.jsonld | 6 +-- data/xheinz/xheinzbioschemas.jsonld | 22 ++++---- data/xhm/xhmbioschemas.jsonld | 4 +- data/xia2/xia2bioschemas.jsonld | 2 +- data/xibd/xibdbioschemas.jsonld | 4 +- data/xina/xinabioschemas.jsonld | 4 +- data/xip/xipbioschemas.jsonld | 4 +- data/xispec/xispecbioschemas.jsonld | 2 +- data/xlink/xlinkbioschemas.jsonld | 4 +- data/xlinkdb/xlinkdbbioschemas.jsonld | 2 +- data/xman/xmanbioschemas.jsonld | 4 +- data/xmapbridge/xmapbridgebioschemas.jsonld | 12 ++--- data/xmipp/xmippbioschemas.jsonld | 4 +- data/xml2raf/xml2rafbioschemas.jsonld | 2 +- data/xmlget/xmlgetbioschemas.jsonld | 14 +++--- data/xmltext/xmltextbioschemas.jsonld | 14 +++--- data/xmrf/xmrfbioschemas.jsonld | 4 +- data/xmwas/xmwasbioschemas.jsonld | 4 +- data/xp-ehh/xp-ehhbioschemas.jsonld | 2 +- data/xplormed/xplormedbioschemas.jsonld | 4 +- data/xpn/xpnbioschemas.jsonld | 2 +- data/xpress/xpressbioschemas.jsonld | 4 +- data/xps/xpsbioschemas.jsonld | 8 +-- data/xpyder/xpyderbioschemas.jsonld | 4 +- data/xquest/xquestbioschemas.jsonld | 4 +- data/xrei/xreibioschemas.jsonld | 4 +- data/xs/xsbioschemas.jsonld | 8 +-- data/xscape/xscapebioschemas.jsonld | 8 +-- data/xsult/xsultbioschemas.jsonld | 12 ++--- data/xsyn/xsynbioschemas.jsonld | 16 +++--- data/xtalk/xtalkbioschemas.jsonld | 2 +- data/xtalkdb/xtalkdbbioschemas.jsonld | 4 +- data/xtandem/xtandembioschemas.jsonld | 4 +- .../xtandempipelinebioschemas.jsonld | 2 +- data/xtms/xtmsbioschemas.jsonld | 2 +- data/xtractor/xtractorbioschemas.jsonld | 4 +- data/xvector/xvectorbioschemas.jsonld | 4 +- data/xwalk/xwalkbioschemas.jsonld | 4 +- data/xxmotif/xxmotifbioschemas.jsonld | 18 +++---- data/yabi/yabibioschemas.jsonld | 8 +-- data/yacop/yacopbioschemas.jsonld | 4 +- data/yagm/yagmbioschemas.jsonld | 10 ++-- data/yakusa/yakusabioschemas.jsonld | 4 +- data/yamss/yamssbioschemas.jsonld | 16 +++--- data/yank/yankbioschemas.jsonld | 6 +-- data/yapsa/yapsabioschemas.jsonld | 4 +- data/yaqcaffy/yaqcaffybioschemas.jsonld | 8 +-- data/yarn/yarnbioschemas.jsonld | 6 +-- data/yasara/yasarabioschemas.jsonld | 4 +- data/yass/yassbioschemas.jsonld | 4 +- ...st-deletion-library-toolsbioschemas.jsonld | 4 +- data/yeast_kid/yeast_kidbioschemas.jsonld | 6 +-- .../yeast_metabolinerbioschemas.jsonld | 4 +- data/yeastgfp/yeastgfpbioschemas.jsonld | 2 +- data/yeastract/yeastractbioschemas.jsonld | 4 +- .../yeastspotterbioschemas.jsonld | 4 +- data/yinoyang/yinoyangbioschemas.jsonld | 4 +- data/yloc/ylocbioschemas.jsonld | 4 +- data/yogy/yogybioschemas.jsonld | 4 +- data/yosshi/yosshibioschemas.jsonld | 12 ++--- data/youscope/youscopebioschemas.jsonld | 4 +- data/ypa/ypabioschemas.jsonld | 4 +- data/yrgate/yrgatebioschemas.jsonld | 4 +- data/yvis/yvisbioschemas.jsonld | 18 +++---- data/zcurve/zcurvebioschemas.jsonld | 4 +- data/zdock/zdockbioschemas.jsonld | 4 +- data/zebrastm/zebrastmbioschemas.jsonld | 2 +- data/zeus/zeusbioschemas.jsonld | 4 +- data/zfin/zfinbioschemas.jsonld | 4 +- data/zfn-scores/zfn-scoresbioschemas.jsonld | 4 +- data/zfpkm/zfpkmbioschemas.jsonld | 26 +++++----- data/zifit/zifitbioschemas.jsonld | 4 +- data/zinbwave/zinbwavebioschemas.jsonld | 2 +- .../zinc_finger_toolsbioschemas.jsonld | 4 +- data/zincbind/zincbindbioschemas.jsonld | 16 +++--- .../zincidentifierbioschemas.jsonld | 4 +- data/zincpharmer/zincpharmerbioschemas.jsonld | 4 +- .../zisland_explorerbioschemas.jsonld | 4 +- data/zlibbioc/zlibbiocbioschemas.jsonld | 4 +- data/zodiac/zodiacbioschemas.jsonld | 12 ++--- data/zooma/zoomabioschemas.jsonld | 18 +++---- data/zooscatr/zooscatrbioschemas.jsonld | 4 +- data/zorro/zorrobioschemas.jsonld | 4 +- .../zpicture_multibioschemas.jsonld | 4 +- data/zt/ztbioschemas.jsonld | 4 +- data/zygprob/zygprobbioschemas.jsonld | 4 +- 9486 files changed, 31176 insertions(+), 31176 deletions(-) diff --git a/data/1000genomes/1000genomesbioschemas.jsonld b/data/1000genomes/1000genomesbioschemas.jsonld index dcd80bab4ad29..9e508b36bf0ae 100644 --- a/data/1000genomes/1000genomesbioschemas.jsonld +++ b/data/1000genomes/1000genomesbioschemas.jsonld @@ -37,16 +37,16 @@ "@id": "edam:operation_3202" }, { - "@id": "edam:operation_3196" + "@id": "edam:operation_3431" }, { - "@id": "edam:operation_3431" + "@id": "edam:operation_3196" } ], "sc:name": "1000Genomes", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://www.internationalgenome.org" diff --git a/data/1000genomes_assembly_converter/1000genomes_assembly_converterbioschemas.jsonld b/data/1000genomes_assembly_converter/1000genomes_assembly_converterbioschemas.jsonld index c5c96d7a8541f..34f80c26457ef 100644 --- a/data/1000genomes_assembly_converter/1000genomes_assembly_converterbioschemas.jsonld +++ b/data/1000genomes_assembly_converter/1000genomes_assembly_converterbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Map your data to the current assembly.", "sc:name": "1000Genomes assembly converter", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:provider": "EMBL-EBI", "sc:url": "http://browser.1000genomes.org/tools.html", diff --git a/data/1000genomes_data_slicer/1000genomes_data_slicerbioschemas.jsonld b/data/1000genomes_data_slicer/1000genomes_data_slicerbioschemas.jsonld index 79a9b188209b9..3179208bde53f 100644 --- a/data/1000genomes_data_slicer/1000genomes_data_slicerbioschemas.jsonld +++ b/data/1000genomes_data_slicer/1000genomes_data_slicerbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Get a subset of data from a BAM or VCF file.", "sc:name": "1000Genomes data slicer", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:provider": "EMBL-EBI", "sc:url": "http://browser.1000genomes.org/tools.html", diff --git a/data/1000genomes_id_history_converter/1000genomes_id_history_converterbioschemas.jsonld b/data/1000genomes_id_history_converter/1000genomes_id_history_converterbioschemas.jsonld index 4d30e976e11d6..553dba3710070 100644 --- a/data/1000genomes_id_history_converter/1000genomes_id_history_converterbioschemas.jsonld +++ b/data/1000genomes_id_history_converter/1000genomes_id_history_converterbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Convert a set of Ensembl IDs from a previous release into their current equivalents.", "sc:name": "1000Genomes ID history converter", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:provider": "EMBL-EBI", diff --git a/data/1000genomes_variation_pattern_finder/1000genomes_variation_pattern_finderbioschemas.jsonld b/data/1000genomes_variation_pattern_finder/1000genomes_variation_pattern_finderbioschemas.jsonld index 574aa93b09d27..8412709e1e90c 100644 --- a/data/1000genomes_variation_pattern_finder/1000genomes_variation_pattern_finderbioschemas.jsonld +++ b/data/1000genomes_variation_pattern_finder/1000genomes_variation_pattern_finderbioschemas.jsonld @@ -20,9 +20,9 @@ "sc:description": "Identify variation patterns in a chromosomal region of interest for different individuals.", "sc:name": "1000Genomes Variation Pattern Finder", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:provider": "EMBL-EBI", "sc:url": "http://browser.1000genomes.org/tools.html", diff --git a/data/13check_rna/13check_rnabioschemas.jsonld b/data/13check_rna/13check_rnabioschemas.jsonld index 4d48c7375c9e9..5a88ab0fc492f 100644 --- a/data/13check_rna/13check_rnabioschemas.jsonld +++ b/data/13check_rna/13check_rnabioschemas.jsonld @@ -11,17 +11,17 @@ "@id": "https://bio.tools/13Check_RNA", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "J. A. Vila", - "A. A. Icazatti" + "A. A. Icazatti", + "J. A. Vila" ], "sc:additionalType": "Library", "sc:description": "Tool to evaluate 13C chemical shift assignments of RNA.", "sc:license": "MIT", "sc:name": "13Check_RNA", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "https://github.com/BIOS-IMASL/13Check_RNA" } \ No newline at end of file diff --git a/data/2d-mh/2d-mhbioschemas.jsonld b/data/2d-mh/2d-mhbioschemas.jsonld index 416e3a1837da6..5762a76bca095 100644 --- a/data/2d-mh/2d-mhbioschemas.jsonld +++ b/data/2d-mh/2d-mhbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/2d-mh", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Xiao Lab", - "Xuan Xiao" + "Xuan Xiao", + "Xiao Lab" ], "sc:additionalType": "Web application", "sc:citation": "pubmed:20696175", @@ -20,8 +20,8 @@ "sc:name": "2D-MH", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://www.jci-bioinfo.cn/pplot/2D-MH" } \ No newline at end of file diff --git a/data/2d-page/2d-pagebioschemas.jsonld b/data/2d-page/2d-pagebioschemas.jsonld index f76840832ab3d..7ad572deec58c 100644 --- a/data/2d-page/2d-pagebioschemas.jsonld +++ b/data/2d-page/2d-pagebioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "2D-PAGE database.", "sc:name": "2D-PAGE", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:provider": "University of Siena, Italy", "sc:url": "http://www.bio-mol.unisi.it/cgi-bin/2d/2d.cgi" diff --git a/data/2dprot/2dprotbioschemas.jsonld b/data/2dprot/2dprotbioschemas.jsonld index 68cb962f2bdc0..1549d9da792d0 100644 --- a/data/2dprot/2dprotbioschemas.jsonld +++ b/data/2dprot/2dprotbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Visualization of protein secondary structure via 2D diagrams. The 2D diagrams are based on whole protein family and they take into account 2D structure of the protein family members.", "sc:name": "2DProt", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "http://78.128.250.85/2DProt/" } \ No newline at end of file diff --git a/data/2dss/2dssbioschemas.jsonld b/data/2dss/2dssbioschemas.jsonld index 02409dc0a3dc9..6c458256e5183 100644 --- a/data/2dss/2dssbioschemas.jsonld +++ b/data/2dss/2dssbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Juliana S.. Bernardes", "sc:additionalType": [ - "Web application", - "Web service" + "Web service", + "Web application" ], "sc:description": "Web server for protein secondary structure visualization.", "sc:license": "Unlicense", "sc:name": "2dSS", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://genome.lcqb.upmc.fr/2dss/" } \ No newline at end of file diff --git a/data/2struccompare/2struccomparebioschemas.jsonld b/data/2struccompare/2struccomparebioschemas.jsonld index 3c41556183171..bcb3ab3db25ae 100644 --- a/data/2struccompare/2struccomparebioschemas.jsonld +++ b/data/2struccompare/2struccomparebioschemas.jsonld @@ -13,27 +13,27 @@ "@id": "https://bio.tools/2StrucCompare", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Robert W. Janes", - "Elliot Drew" + "Elliot Drew", + "Robert W. Janes" ], "sc:additionalType": [ - "Web service", - "Web application" + "Web application", + "Web service" ], "sc:citation": [ - "pmcid:PMC6602421", "pubmed:31114904", { "@id": "https://doi.org/10.1093/NAR/GKZ456" - } + }, + "pmcid:PMC6602421" ], "sc:description": "Webserver for the comparison of secondary structure algorithms and the secondary structure of protein structures.", "sc:featureList": [ { - "@id": "edam:operation_2488" + "@id": "edam:operation_0319" }, { - "@id": "edam:operation_0319" + "@id": "edam:operation_2488" }, { "@id": "edam:operation_0267" @@ -42,9 +42,9 @@ "sc:license": "Unlicense", "sc:name": "2StrucCompare", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://2struccompare.cryst.bbk.ac.uk/index.php" }, diff --git a/data/3d-blast/3d-blastbioschemas.jsonld b/data/3d-blast/3d-blastbioschemas.jsonld index 388e1ddb10bf4..82ef4b797807f 100644 --- a/data/3d-blast/3d-blastbioschemas.jsonld +++ b/data/3d-blast/3d-blastbioschemas.jsonld @@ -17,11 +17,11 @@ "Web application" ], "sc:citation": [ + "pmcid:PMC1868941", + "pubmed:17335583", { "@id": "https://doi.org/10.1186/gb-2007-8-3-r31" - }, - "pmcid:PMC1868941", - "pubmed:17335583" + } ], "sc:description": "3D-BLAST is a very fast and accurate method for discovering the homologous proteins and evolutionary classifications of a newly determined protein structure.", "sc:featureList": { @@ -29,9 +29,9 @@ }, "sc:name": "3D-BLAST beta", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://3d-blast.life.nctu.edu.tw/", "sc:version": "1.02" diff --git a/data/3d-dart/3d-dartbioschemas.jsonld b/data/3d-dart/3d-dartbioschemas.jsonld index f845409bb55ff..1cbf7dc848857 100644 --- a/data/3d-dart/3d-dartbioschemas.jsonld +++ b/data/3d-dart/3d-dartbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0001-7369-1322", - "@type": "schema:Organization" - }, { "@id": "https://bio.tools/3d-dart", "@type": "sc:SoftwareApplication", @@ -26,8 +22,8 @@ "sc:description": "A web server for generation of 3D-structural DNA models with a defined conformation by providing control over both ‘global’ and ‘local’ conformational features.", "sc:name": "3D-DART", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:provider": { @@ -35,6 +31,10 @@ }, "sc:url": "https://milou.science.uu.nl/services/3DDART/", "sc:version": "1" + }, + { + "@id": "http://orcid.org/0000-0001-7369-1322", + "@type": "schema:Organization" } ] } \ No newline at end of file diff --git a/data/3d-e-chem/3d-e-chembioschemas.jsonld b/data/3d-e-chem/3d-e-chembioschemas.jsonld index f383bf13bd724..23587fc5b0416 100644 --- a/data/3d-e-chem/3d-e-chembioschemas.jsonld +++ b/data/3d-e-chem/3d-e-chembioschemas.jsonld @@ -13,17 +13,17 @@ "@id": "https://bio.tools/3d-e-chem", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "C. De. Graaf", + "S. Verhoeven", "Ross Mcguire", - "S. Verhoeven" + "C. De. Graaf" ], "sc:additionalType": "Desktop application", "sc:citation": [ + "pmcid:PMC5342320", "pubmed:28125221", { "@id": "https://doi.org/10.1021/ACS.JCIM.6B00686" - }, - "pmcid:PMC5342320" + } ], "sc:description": "Structural Cheminformatics Research Infrastructure in a Freely Available Virtual Machine.", "sc:featureList": [ @@ -31,17 +31,17 @@ "@id": "edam:operation_2414" }, { - "@id": "edam:operation_2406" + "@id": "edam:operation_3646" }, { - "@id": "edam:operation_3646" + "@id": "edam:operation_2406" } ], "sc:name": "3D-e-Chem-VM", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://3d-e-chem.github.io/3D-e-Chem-VM/" }, diff --git a/data/3d-footprint/3d-footprintbioschemas.jsonld b/data/3d-footprint/3d-footprintbioschemas.jsonld index 3d9dd9a040eaf..a796dca06dcb7 100644 --- a/data/3d-footprint/3d-footprintbioschemas.jsonld +++ b/data/3d-footprint/3d-footprintbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "3D-footprint provides estimates of binding specificity for all protein-DNA complexes available at the Protein Data Bank. The web interface allows the user to: (i) browse DNA-binding proteins by keyword; (ii) find proteins that recognize a similar DNA motif and (iii) BLAST similar DNA-binding proteins, highlighting interface residues in the resulting alignments. Comparisons with expert-curated databases RegulonDB and TRANSFAC support the quality of structure-based estimates of specificity.", "sc:name": "3D-Footprint", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://floresta.eead.csic.es/3dfootprint" } \ No newline at end of file diff --git a/data/3d-partner/3d-partnerbioschemas.jsonld b/data/3d-partner/3d-partnerbioschemas.jsonld index 28c4b25d058a4..a5ca85801da87 100644 --- a/data/3d-partner/3d-partnerbioschemas.jsonld +++ b/data/3d-partner/3d-partnerbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/3d-partner", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Jinn-Moon Yang", - "Yu-Shu Lo" + "Yu-Shu Lo", + "Jinn-Moon Yang" ], "sc:additionalType": "Web application", "sc:citation": "pubmed:17517763", @@ -20,9 +20,9 @@ "sc:license": "Unlicense", "sc:name": "3D-partner", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "http://gemdock.life.nctu.edu.tw/3d-partner/" } \ No newline at end of file diff --git a/data/3d-pssm/3d-pssmbioschemas.jsonld b/data/3d-pssm/3d-pssmbioschemas.jsonld index 6299c43ea1c9b..abedaad8a9622 100644 --- a/data/3d-pssm/3d-pssmbioschemas.jsonld +++ b/data/3d-pssm/3d-pssmbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Protein fold recognition using 1d and 3d sequence profiles coupled with secondary structure and solvation potential information.", "sc:name": "3D-pssm", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://www.sbg.bio.ic.ac.uk/~3dpssm/index2.html" } \ No newline at end of file diff --git a/data/3dbionotes/3dbionotesbioschemas.jsonld b/data/3dbionotes/3dbionotesbioschemas.jsonld index ab16731dc2418..df864b7a00b85 100644 --- a/data/3dbionotes/3dbionotesbioschemas.jsonld +++ b/data/3dbionotes/3dbionotesbioschemas.jsonld @@ -15,14 +15,14 @@ "sc:description": "Web based application designed to integrate protein structure, protein sequence and protein annotations in a unique graphical environment. The current version of the application offers a unified, enriched and interactive view of EMDB volumes, PDB structures and Uniprot sequences where the protein annotations stored in Uniprot, Immune Epitope DB, Phospho Site Plus, BioMuta and dSysMap can be explored interactively at sequence and structural level.", "sc:name": "3DBIONOTES", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:provider": [ + "cnb.csic.es", "ELIXIR-ES", - "INB", - "cnb.csic.es" + "INB" ], "sc:url": "http://3dbionotes.cnb.csic.es/ws", "sc:version": "v3" diff --git a/data/3dem_loupe/3dem_loupebioschemas.jsonld b/data/3dem_loupe/3dem_loupebioschemas.jsonld index 8df5fcfed4bb0..b570c192b00d7 100644 --- a/data/3dem_loupe/3dem_loupebioschemas.jsonld +++ b/data/3dem_loupe/3dem_loupebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "3DEM Loupe is a web-server that allows normal mode analysis of any uploaded electron microscopy volume. Results can be explored in 3 dimensions through animations and movies.", "sc:name": "3DEM Loupe", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://3demloupe.cnb.csic.es" diff --git a/data/3dembenchmark/3dembenchmarkbioschemas.jsonld b/data/3dembenchmark/3dembenchmarkbioschemas.jsonld index de3501ed20e6e..a1bb0e5a4d91a 100644 --- a/data/3dembenchmark/3dembenchmarkbioschemas.jsonld +++ b/data/3dembenchmark/3dembenchmarkbioschemas.jsonld @@ -18,9 +18,9 @@ "sc:description": "Robust computational infrastructure capable of supporting the automatic and standardised benchmarking of image processing applications for cryoEM.", "sc:name": "3DEMBenchmark", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:provider": "cnb.csic.es", "sc:url": "http://i2pc.cnb.csic.es/3dembenchmark/LoadHome.htm" diff --git a/data/3did/3didbioschemas.jsonld b/data/3did/3didbioschemas.jsonld index f3d2b554514ee..13b1524dd73b1 100644 --- a/data/3did/3didbioschemas.jsonld +++ b/data/3did/3didbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Collection of protein interactions for which high-resolution three-dimensional structures are known. The interface residues are presented for each interaction type individually, plus global domain interfaces at which one or more partners (domains or peptides) bind. The web server visualizes these interfaces along with atomic details of individual interactions using Jmol.", "sc:name": "3DID database of 3D interacting domains", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://3did.irbbarcelona.org/" } \ No newline at end of file diff --git a/data/3dligandsite/3dligandsitebioschemas.jsonld b/data/3dligandsite/3dligandsitebioschemas.jsonld index 4d527551ca892..d481e42746b59 100644 --- a/data/3dligandsite/3dligandsitebioschemas.jsonld +++ b/data/3dligandsite/3dligandsitebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "3DLigandSite is a web server for the prediction of ligand binding sites. Ligands bound to similar protein structures as the query structure are used to predict the binding site.", "sc:name": "3DLigandSite", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://www.sbg.bio.ic.ac.uk/3dligandsite" diff --git a/data/3dmem-enzyme/3dmem-enzymebioschemas.jsonld b/data/3dmem-enzyme/3dmem-enzymebioschemas.jsonld index ac7ce6524efb2..9c54d66cdb8a6 100644 --- a/data/3dmem-enzyme/3dmem-enzymebioschemas.jsonld +++ b/data/3dmem-enzyme/3dmem-enzymebioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Vassilios Burganos", "sc:additionalType": [ - "Script", - "Workbench" + "Workbench", + "Script" ], "sc:description": "This is an in-house code of the FORTH/ICE-HT Laboratory of Simulation of Advanced Materials and Processes, Patras, Greece, providing a reliable 3D reconstruction and simulation of a membrane bioreactor for lactose hydrolysis with immobilized enzymes. The membrane model is coupled to a macroscopic model of a single membrane fiber unit to produce lactose concentration profiles, lactose consumption predictions, and performance index estimates.", "sc:name": "3DMem-enzyme", diff --git a/data/3dmol/3dmolbioschemas.jsonld b/data/3dmol/3dmolbioschemas.jsonld index b7914ce1ff424..26d2bbeb3a730 100644 --- a/data/3dmol/3dmolbioschemas.jsonld +++ b/data/3dmol/3dmolbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "3Dmol.js", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://3dmol.csb.pitt.edu/" } \ No newline at end of file diff --git a/data/3dmorph/3dmorphbioschemas.jsonld b/data/3dmorph/3dmorphbioschemas.jsonld index a4f762439259d..e311221bbfb0f 100644 --- a/data/3dmorph/3dmorphbioschemas.jsonld +++ b/data/3dmorph/3dmorphbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:license": "MIT", "sc:name": "3DMorph", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "https://github.com/ElisaYork/3DMorph" } \ No newline at end of file diff --git a/data/3dproin/3dproinbioschemas.jsonld b/data/3dproin/3dproinbioschemas.jsonld index 4f5bb94bb9f27..992fbf8930342 100644 --- a/data/3dproin/3dproinbioschemas.jsonld +++ b/data/3dproin/3dproinbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "3DProIN is a computational tool to visualize protein-protein interaction networks in both two dimensional (2D) and three dimensional (3D) view.", "sc:name": "3DProIN", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bicompute.appspot.com/" } \ No newline at end of file diff --git a/data/3dscript/3dscriptbioschemas.jsonld b/data/3dscript/3dscriptbioschemas.jsonld index 19dc283821c39..e9d6b78c5d96b 100644 --- a/data/3dscript/3dscriptbioschemas.jsonld +++ b/data/3dscript/3dscriptbioschemas.jsonld @@ -18,8 +18,8 @@ "sc:name": "3Dscript", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://imagej.net/3Dscript" } \ No newline at end of file diff --git a/data/3dss/3dssbioschemas.jsonld b/data/3dss/3dssbioschemas.jsonld index 1a7e207e05f3c..2b9629cebb060 100644 --- a/data/3dss/3dssbioschemas.jsonld +++ b/data/3dss/3dssbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Tool for superposing two or more protein structures that uses RASMOL for visualization, some browser configuration is necessary.", "sc:name": "3DSS", "sc:operatingSystem": [ - "Linux", "Windows", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://cluster.physics.iisc.ernet.in/3dss/options.html" } \ No newline at end of file diff --git a/data/3matrix/3matrixbioschemas.jsonld b/data/3matrix/3matrixbioschemas.jsonld index 9c7bc998a72c0..6e83372d19a51 100644 --- a/data/3matrix/3matrixbioschemas.jsonld +++ b/data/3matrix/3matrixbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "3Matrix is a tool for visualizing protein sequence motifs and their properties in 3 dimensions. This tool needs to be downloaded and run locally on your own machine.", "sc:name": "3Matrix", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://motif.stanford.edu/distributions/3matrix/" } \ No newline at end of file diff --git a/data/3motif/3motifbioschemas.jsonld b/data/3motif/3motifbioschemas.jsonld index 0fa67c98a56e2..723dc6ce7026f 100644 --- a/data/3motif/3motifbioschemas.jsonld +++ b/data/3motif/3motifbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "3Motif is a tool for visualizing protein sequence motifs and their properties in 3 dimensions from PDB structure files.", "sc:name": "3Motif", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://motif.stanford.edu/distributions/3motif/" } \ No newline at end of file diff --git a/data/3omics/3omicsbioschemas.jsonld b/data/3omics/3omicsbioschemas.jsonld index cdc91c83ef36b..ecf688a6acba0 100644 --- a/data/3omics/3omicsbioschemas.jsonld +++ b/data/3omics/3omicsbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "A web based systems biology visualization tool for integrating human transcriptomic, proteomic and metabolomic data.", "sc:name": "3Omics", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "https://3omics.cmdm.tw/" } \ No newline at end of file diff --git a/data/3srp/3srpbioschemas.jsonld b/data/3srp/3srpbioschemas.jsonld index 583a7c00c2c85..d843f657c541b 100644 --- a/data/3srp/3srpbioschemas.jsonld +++ b/data/3srp/3srpbioschemas.jsonld @@ -9,17 +9,21 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://orcid.org/0000-0003-3237-7382", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/3SRP", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Eric Charpentier", "sc:additionalType": "Workflow", "sc:author": [ - "Dimitri MEISTERMANN", { "@id": "https://orcid.org/0000-0003-3237-7382" }, - "Eric Charpentier" + "Eric Charpentier", + "Dimitri MEISTERMANN" ], "sc:description": "A Snakemake-based pipeline for 3' sequencing RNA profiling data analysis. This 3’ Digital gene expression sequencing technique allows a precise and low-cost transcriptome profiling.\n\nThe main steps of the pipeline are:\n- Samples demultiplexing transform the raw paired-end fastq files into a single-end fastq file for each sample.\n- Alignment on refseq reference transcriptome is performed using bwa.\n- Aligned reads are parsed and UMI are counted for each gene in each sample to create an expression matrix.\nIf secondary analysis has been asked (providing a comparisons file), the expression matrix is normalized and differentially expressed genes (DEG) are searched using deseq2.\n- If DEG are found, annotation is performed using the database GO and KEGG.\n- A report is provided listing the main quality controls performed and the results found.", "sc:name": "3SRP", @@ -27,10 +31,6 @@ "sc:provider": "BiRD", "sc:url": "https://gitlab.univ-nantes.fr/bird_pipeline_registry/srp-pipeline", "sc:version": "1.0" - }, - { - "@id": "https://orcid.org/0000-0003-3237-7382", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/3uss/3ussbioschemas.jsonld b/data/3uss/3ussbioschemas.jsonld index 46c822dbac1c5..afd965fcdfd9a 100644 --- a/data/3uss/3ussbioschemas.jsonld +++ b/data/3uss/3ussbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Web-server developed with the aim of retrieving 3’UTR genomic coordinates and nucleotide sequences of the transcripts assembled by standard RNA-seq analysis protocols.", "sc:name": "3USS", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://circe.med.uniroma1.it/3uss_server/" diff --git a/data/4dgenome/4dgenomebioschemas.jsonld b/data/4dgenome/4dgenomebioschemas.jsonld index 47a0ee34d1b59..a0a6f4ebb5211 100644 --- a/data/4dgenome/4dgenomebioschemas.jsonld +++ b/data/4dgenome/4dgenomebioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1093/bioinformatics/btv158", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/4DGenome", "@type": "sc:SoftwareApplication", @@ -17,10 +21,10 @@ "Web application" ], "sc:citation": [ - "pubmed:25788621", { "@id": "https://doi.org/10.1093/bioinformatics/btv158" }, + "pubmed:25788621", "pmcid:PMC4514924" ], "sc:description": "Curated database of chromatin interaction data covering five organisms: Homo sapiens, Mus musculus, Drosophila melanogaster, Plasmodium falciparum, and Saccharomyces cerevisiae.", @@ -31,14 +35,10 @@ "sc:name": "4DGenome", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://4dgenome.research.chop.edu" - }, - { - "@id": "https://doi.org/10.1093/bioinformatics/btv158", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/4dxpress/4dxpressbioschemas.jsonld b/data/4dxpress/4dxpressbioschemas.jsonld index 8e8cf2df8cf46..7ae07424ca1e1 100644 --- a/data/4dxpress/4dxpressbioschemas.jsonld +++ b/data/4dxpress/4dxpressbioschemas.jsonld @@ -32,11 +32,11 @@ "@id": "edam:topic_0623" }, "sc:citation": [ - "pubmed:17916571", - "pmcid:PMC2238840", { "@id": "https://doi.org/10.1093/nar/gkm797" - } + }, + "pmcid:PMC2238840", + "pubmed:17916571" ], "sc:description": "A platform to query and compare gene expression data during the development of the major model animals (zebrafish, drosophila, medaka, mouse). The high resolution expression data was acquired through whole mount in situ hybridsation-, antibody- or transgenic experiments.", "sc:featureList": { @@ -44,8 +44,8 @@ }, "sc:name": "4DXpress", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:provider": "EMBL", diff --git a/data/4mcpred-ifl/4mcpred-iflbioschemas.jsonld b/data/4mcpred-ifl/4mcpred-iflbioschemas.jsonld index 00e9583cdaeb1..1e7e56ecb3206 100644 --- a/data/4mcpred-ifl/4mcpred-iflbioschemas.jsonld +++ b/data/4mcpred-ifl/4mcpred-iflbioschemas.jsonld @@ -15,16 +15,16 @@ "Shasha Luan" ], "sc:additionalType": [ - "Web application", - "Web service" + "Web service", + "Web application" ], "sc:citation": "pubmed:31099381", "sc:description": "Generic webserver for predicting N4-methylcytosine (4mC) sites.", "sc:license": "Unlicense", "sc:name": "4mcPred-IFL", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://server.malab.cn/4mcPred-IFL" diff --git a/data/4pipe4/4pipe4bioschemas.jsonld b/data/4pipe4/4pipe4bioschemas.jsonld index 10214e2953a74..4d4a0480acc49 100644 --- a/data/4pipe4/4pipe4bioschemas.jsonld +++ b/data/4pipe4/4pipe4bioschemas.jsonld @@ -25,10 +25,10 @@ "@id": "edam:topic_2885" }, { - "@id": "edam:topic_0080" + "@id": "edam:topic_0077" }, { - "@id": "edam:topic_0077" + "@id": "edam:topic_0080" } ], "sc:citation": [ @@ -46,8 +46,8 @@ "sc:license": "GPL-3.0", "sc:name": "4Pipe4", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:softwareHelp": { "@id": "https://github.com/StuntsPT/4Pipe4/" diff --git a/data/4sale/4salebioschemas.jsonld b/data/4sale/4salebioschemas.jsonld index d875161787a98..be5b1ca1c79a7 100644 --- a/data/4sale/4salebioschemas.jsonld +++ b/data/4sale/4salebioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "4SALE allows a fast sequence and synchronous secondary structure alignment for large data sets and for the first time synchronous manual editing of aligned sequences and their secondary structures. This study describes an algorithm for the synchronous alignment of sequences and their associated secondary structures as well as the main features of 4SALE used for further analyses and editing. 4SALE builds an optimal and unique starting point for every RNA sequence and structure analysis.", "sc:name": "4SALE", "sc:operatingSystem": [ - "Linux", "Windows", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://4sale.bioapps.biozentrum.uni-wuerzburg.de/index.html", "sc:version": "1.7" diff --git a/data/959_nematode_genomes/959_nematode_genomesbioschemas.jsonld b/data/959_nematode_genomes/959_nematode_genomesbioschemas.jsonld index b5de942f32592..162c3380b7316 100644 --- a/data/959_nematode_genomes/959_nematode_genomesbioschemas.jsonld +++ b/data/959_nematode_genomes/959_nematode_genomesbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "A community-curated semantic wiki to coordinate the sequencing efforts of individual labs to collectively sequence 959 genomes spanning the phylum Nematoda. The main goal of the wiki is to track sequencing projects that have been proposed, are in progress, or have been completed.", "sc:name": "959 Nematode Genomes", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://www.nematodes.org/nematodegenomes/index.php/Main_Page" } \ No newline at end of file diff --git a/data/a-madman/a-madmanbioschemas.jsonld b/data/a-madman/a-madmanbioschemas.jsonld index 374c0f87b8ffb..4bf90c63c3f40 100644 --- a/data/a-madman/a-madmanbioschemas.jsonld +++ b/data/a-madman/a-madmanbioschemas.jsonld @@ -11,20 +11,20 @@ "@id": "https://bio.tools/a-madman", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Andrea Bisognin", - "Stefania Bortoluzzi" + "Stefania Bortoluzzi", + "Andrea Bisognin" ], "sc:additionalType": [ - "Web application", - "Command-line tool" + "Command-line tool", + "Web application" ], "sc:description": "Open source web application and gene chip analysis automation framework for annotation-based meta-analysis of data from public repositories (NCBI GEO). It allows retrieval, annotation, organization and analysis of gene expression data from public repository. It automates several analysis steps to be accomplished to setup a working environment for conducting meta-analyses, without giving up power and flexibility.", "sc:license": "GPL-3.0", "sc:name": "A-MADMAN", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:provider": "ELIXIR-ITA-PADOVA", "sc:url": "http://compgen.bio.unipd.it/bioinfo/amadman/", diff --git a/data/a-o-tool/a-o-toolbioschemas.jsonld b/data/a-o-tool/a-o-toolbioschemas.jsonld index f003d791c6c21..cc976f8f60c43 100644 --- a/data/a-o-tool/a-o-toolbioschemas.jsonld +++ b/data/a-o-tool/a-o-toolbioschemas.jsonld @@ -13,10 +13,6 @@ "@id": "https://orcid.org/0000-0002-2585-3830", "@type": "schema:Person" }, - { - "@id": "https://doi.org/10.1186/S12920-019-0524-5", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/a-o-tool", "@type": "sc:SoftwareApplication", @@ -25,19 +21,19 @@ }, "sc:additionalType": "Command-line tool", "sc:citation": [ + "pubmed:31122257", { "@id": "https://doi.org/10.1186/S12920-019-0524-5" }, - "pubmed:31122257", "pmcid:PMC6533699" ], "sc:description": "Exploiting orthology and de novo transcriptome assembly to refine target sequence information.", "sc:featureList": [ { - "@id": "edam:operation_3258" + "@id": "edam:operation_3644" }, { - "@id": "edam:operation_3644" + "@id": "edam:operation_3258" }, { "@id": "edam:operation_0476" @@ -46,11 +42,15 @@ "sc:license": "GPL-3.0", "sc:name": "a-o-tool", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "https://github.com/Julia-F-S/a-o-tool" + }, + { + "@id": "https://doi.org/10.1186/S12920-019-0524-5", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/a4/a4bioschemas.jsonld b/data/a4/a4bioschemas.jsonld index 17e1197c4ee34..f91ed4dd6b88f 100644 --- a/data/a4/a4bioschemas.jsonld +++ b/data/a4/a4bioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/a4", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Willem Ligtenberg", - "Tobias Verbeke" + "Tobias Verbeke", + "Willem Ligtenberg" ], "sc:additionalType": [ "Library", @@ -23,8 +23,8 @@ "sc:name": "a4", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/a4.html", "sc:version": "1.22.0" diff --git a/data/a4base/a4basebioschemas.jsonld b/data/a4base/a4basebioschemas.jsonld index c5e7fc68b18f1..559429e2464cf 100644 --- a/data/a4base/a4basebioschemas.jsonld +++ b/data/a4base/a4basebioschemas.jsonld @@ -11,19 +11,19 @@ "@id": "https://bio.tools/a4base", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Willem Ligtenberg", - "Tobias Verbeke" + "Tobias Verbeke", + "Willem Ligtenberg" ], "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "An R package of the \"a4\" packages collection. It comprises of basic funtionalities needed to analyse Affymetrix microarray experiment results.", "sc:license": "GPL-3.0", "sc:name": "a4Base", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/a4Base.html", diff --git a/data/a4classif/a4classifbioschemas.jsonld b/data/a4classif/a4classifbioschemas.jsonld index 49311076c5c19..c2c996e2af0b1 100644 --- a/data/a4classif/a4classifbioschemas.jsonld +++ b/data/a4classif/a4classifbioschemas.jsonld @@ -11,20 +11,20 @@ "@id": "https://bio.tools/a4classif", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Willem Ligtenberg", - "Tobias Verbeke" + "Tobias Verbeke", + "Willem Ligtenberg" ], "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "An R package of the \"a4\" packages collection. It comprises of commands using machine learning algorithms for classification work to analyse Affymetrix microarray experiment results.", "sc:license": "GPL-3.0", "sc:name": "a4Classif", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/a4Classif.html", "sc:version": "1.22.0" diff --git a/data/a4core/a4corebioschemas.jsonld b/data/a4core/a4corebioschemas.jsonld index 716f1574c0b18..340fbee00651c 100644 --- a/data/a4core/a4corebioschemas.jsonld +++ b/data/a4core/a4corebioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/a4core", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Tobias Verbeke", - "Willem Ligtenberg" + "Willem Ligtenberg", + "Tobias Verbeke" ], "sc:additionalType": [ "Command-line tool", @@ -22,9 +22,9 @@ "sc:license": "GPL-3.0", "sc:name": "a4Core", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/a4Core.html", "sc:version": "1.22.0" diff --git a/data/a4preproc/a4preprocbioschemas.jsonld b/data/a4preproc/a4preprocbioschemas.jsonld index 14ca26d797158..b08593479528e 100644 --- a/data/a4preproc/a4preprocbioschemas.jsonld +++ b/data/a4preproc/a4preprocbioschemas.jsonld @@ -15,16 +15,16 @@ "Willem Ligtenberg" ], "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "An R package of the \"a4\" packages collection. It is used for microarray data preprocessing where annotation information is added to experimental result data.", "sc:license": "GPL-3.0", "sc:name": "a4Preproc", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/a4Preproc.html", "sc:version": "1.22.0" diff --git a/data/a4reporting/a4reportingbioschemas.jsonld b/data/a4reporting/a4reportingbioschemas.jsonld index cf6fa1a251ee2..7fdd4d7f460fe 100644 --- a/data/a4reporting/a4reportingbioschemas.jsonld +++ b/data/a4reporting/a4reportingbioschemas.jsonld @@ -11,20 +11,20 @@ "@id": "https://bio.tools/a4reporting", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Tobias Verbeke", - "Willem Ligtenberg" + "Willem Ligtenberg", + "Tobias Verbeke" ], "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "An R package of the \"a4\" packages collection. It provides reporting functionality.", "sc:license": "GPL-3.0", "sc:name": "a4Reporting", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/a4Reporting.html", "sc:version": "1.22.0" diff --git a/data/a5-miseq/a5-miseqbioschemas.jsonld b/data/a5-miseq/a5-miseqbioschemas.jsonld index 98b153e22edd9..cae7e540ad241 100644 --- a/data/a5-miseq/a5-miseqbioschemas.jsonld +++ b/data/a5-miseq/a5-miseqbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "De novo assembly & analysis of Illumina sequence data, including the A5 pipeline, A5-miseq, tools to evaluate assembly quality, and scripts to facilitate data submission to NCBI and the RAST annotation system", "sc:name": "A5-miseq", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://sourceforge.net/projects/ngopt/" } \ No newline at end of file diff --git a/data/aacompident/aacompidentbioschemas.jsonld b/data/aacompident/aacompidentbioschemas.jsonld index ce801bf200e50..ab7b09f8a075b 100644 --- a/data/aacompident/aacompidentbioschemas.jsonld +++ b/data/aacompident/aacompidentbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AACompIdent", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://web.expasy.org/aacompident" } \ No newline at end of file diff --git a/data/aacompsim/aacompsimbioschemas.jsonld b/data/aacompsim/aacompsimbioschemas.jsonld index 5c032af7166df..ef2f2dd2a9fe4 100644 --- a/data/aacompsim/aacompsimbioschemas.jsonld +++ b/data/aacompsim/aacompsimbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Compare amino acid composition of a UniProtKB entry with some or all other UniProtKB entries. Several constellations are available, corresponding to various amino acid analysis techniques.", "sc:name": "AACompSim", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "https://web.expasy.org/aacompsim/" } \ No newline at end of file diff --git a/data/aaindexextract/aaindexextractbioschemas.jsonld b/data/aaindexextract/aaindexextractbioschemas.jsonld index 14a59174818b4..202017a57ffbc 100644 --- a/data/aaindexextract/aaindexextractbioschemas.jsonld +++ b/data/aaindexextract/aaindexextractbioschemas.jsonld @@ -12,23 +12,23 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "Wellcome Trust", - "UK BBSRC", "EMBOSS Contributors", - "UK MRC" + "UK BBSRC", + "UK MRC", + "Wellcome Trust" ], "sc:description": "Extract amino acid property data from AAINDEX.", "sc:funder": [ - "UK BBSRC", + "UK MRC", "Wellcome Trust", - "UK MRC" + "UK BBSRC" ], "sc:license": "GPL-3.0", "sc:name": "aaindexextract", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:provider": [ "EMBOSS", diff --git a/data/aaindexloc/aaindexlocbioschemas.jsonld b/data/aaindexloc/aaindexlocbioschemas.jsonld index b30dbf19798d0..be76174cf0034 100644 --- a/data/aaindexloc/aaindexlocbioschemas.jsonld +++ b/data/aaindexloc/aaindexlocbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Machine-learning-based algorithm that uses amino acid index to predict protein subcellular localization based on its sequence.", "sc:name": "AAIndexLoc", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://aaindexloc.bii.a-star.edu.sg/" diff --git a/data/aascatterplot/aascatterplotbioschemas.jsonld b/data/aascatterplot/aascatterplotbioschemas.jsonld index 362ec33592824..478fdd85c8a8a 100644 --- a/data/aascatterplot/aascatterplotbioschemas.jsonld +++ b/data/aascatterplot/aascatterplotbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "GPL-3.0", "sc:name": "AAScatterPlot", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "https://github.com/WhittakerLab/AAScatterPlot", "sc:version": "1.0" diff --git a/data/aassites/aassitesbioschemas.jsonld b/data/aassites/aassitesbioschemas.jsonld index 87011b01d4773..3ec2b673c2c17 100644 --- a/data/aassites/aassitesbioschemas.jsonld +++ b/data/aassites/aassitesbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Automated bioinformatics pipeline to analyse SNP containing DNA sequences mainly for finding SNPs which cause a change in the splicing pattern.", "sc:name": "AASsites", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://genius.embnet.dkfz-heidelberg.de/menu/cgi-bin/w2h-open/w2h.open/w2h.welcome#aassites" } \ No newline at end of file diff --git a/data/aastretch/aastretchbioschemas.jsonld b/data/aastretch/aastretchbioschemas.jsonld index 31a1fd77d1dd5..c3333d1c36c79 100644 --- a/data/aastretch/aastretchbioschemas.jsonld +++ b/data/aastretch/aastretchbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Matteo Ramazzotti", "sc:additionalType": [ - "Desktop application", - "Command-line tool" + "Command-line tool", + "Desktop application" ], "sc:author": "Matteo Ramazzotti - matteo dot ramazzotti at unifi.it", "sc:citation": "pubmed:22312432", diff --git a/data/abaenrichment/abaenrichmentbioschemas.jsonld b/data/abaenrichment/abaenrichmentbioschemas.jsonld index 48efd8fb275ea..2feb143037a96 100644 --- a/data/abaenrichment/abaenrichmentbioschemas.jsonld +++ b/data/abaenrichment/abaenrichmentbioschemas.jsonld @@ -18,15 +18,15 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Steffi Grote", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:citation": [ { "@id": "https://doi.org/10.1093/bioinformatics/btw392" }, - "pubmed:27354695", - "pmcid:PMC5048072" + "pmcid:PMC5048072", + "pubmed:27354695" ], "sc:description": "The package is designed to test for enrichment of user defined candidate genes in the set of expressed genes in different human brain regions. The core function 'aba_enrich' integrates the expression of the candidate gene set (averaged across donors) and the structural information of the brain using an ontology, both provided by the Allen Brain Atlas project. 'aba_enrich' interfaces the ontology enrichment software FUNC to perform the statistical analyses.", "sc:featureList": { @@ -35,8 +35,8 @@ "sc:license": "GPL-2.0", "sc:name": "ABAEnrichment", "sc:operatingSystem": [ - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ABAEnrichment.html", "sc:version": "1.4.0" diff --git a/data/abarray/abarraybioschemas.jsonld b/data/abarray/abarraybioschemas.jsonld index 51fd701bf7221..b33a2402ea4c5 100644 --- a/data/abarray/abarraybioschemas.jsonld +++ b/data/abarray/abarraybioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-3.0", "sc:name": "ABarray", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ABarray.html", "sc:version": "1.42.0" diff --git a/data/abcd/abcdbioschemas.jsonld b/data/abcd/abcdbioschemas.jsonld index 2c62d974bb068..12072e4d1bdb5 100644 --- a/data/abcd/abcdbioschemas.jsonld +++ b/data/abcd/abcdbioschemas.jsonld @@ -9,14 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0002-5643-2668", - "@type": "schema:Person" - }, - { - "@id": "https://doi.org/10.1093/bioinformatics/btt041", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/abcd", "@type": "sc:SoftwareApplication", @@ -25,10 +17,10 @@ "Desktop application" ], "sc:citation": [ - "pubmed:23357921", { "@id": "https://doi.org/10.1093/bioinformatics/btt041" }, + "pubmed:23357921", "pmcid:PMC3597143" ], "sc:contributor": { @@ -42,10 +34,18 @@ "sc:name": "AbCD", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://yunliweb.its.unc.edu/AbCD.html" + }, + { + "@id": "http://orcid.org/0000-0002-5643-2668", + "@type": "schema:Person" + }, + { + "@id": "https://doi.org/10.1093/bioinformatics/btt041", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/abcpred/abcpredbioschemas.jsonld b/data/abcpred/abcpredbioschemas.jsonld index 8cc9a4f576d78..0cab448f41352 100644 --- a/data/abcpred/abcpredbioschemas.jsonld +++ b/data/abcpred/abcpredbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Server to predict linear B cell epitope regions in an antigen sequence, using an artificial neural network. This server will assist in locating epitope regions that are useful in selecting synthetic vaccine candidates, disease diagonosis and also in allergy research.", "sc:name": "ABCpred", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "http://crdd.osdd.net/raghava//abcpred/" } \ No newline at end of file diff --git a/data/abeem_solver/abeem_solverbioschemas.jsonld b/data/abeem_solver/abeem_solverbioschemas.jsonld index 69394a932f84f..b2322c13771ae 100644 --- a/data/abeem_solver/abeem_solverbioschemas.jsonld +++ b/data/abeem_solver/abeem_solverbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "ABEEM Solver", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:provider": "ELIXIR-CZ", "sc:url": "http://ncbr.muni.cz/~svobodova/eem_abeem", diff --git a/data/aber-owl/aber-owlbioschemas.jsonld b/data/aber-owl/aber-owlbioschemas.jsonld index fdb82ad0776c2..6e7c84a2dab37 100644 --- a/data/aber-owl/aber-owlbioschemas.jsonld +++ b/data/aber-owl/aber-owlbioschemas.jsonld @@ -9,17 +9,21 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1186/S12859-015-0456-9", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/aber-owl", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Robert Hoehndorf", "sc:additionalType": "Database portal", "sc:citation": [ - "pubmed:25627673", { "@id": "https://doi.org/10.1186/S12859-015-0456-9" }, - "pmcid:PMC4384359" + "pmcid:PMC4384359", + "pubmed:25627673" ], "sc:description": "Framework for automatically accessing information that is annotated with ontologies or contains terms used to label classes in ontologies.", "sc:featureList": { @@ -27,15 +31,11 @@ }, "sc:name": "Aber-OWL", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://aber-owl.net/#/" - }, - { - "@id": "https://doi.org/10.1186/S12859-015-0456-9", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/abi2xml/abi2xmlbioschemas.jsonld b/data/abi2xml/abi2xmlbioschemas.jsonld index ffe741ecea58e..cb30c4ce8997d 100644 --- a/data/abi2xml/abi2xmlbioschemas.jsonld +++ b/data/abi2xml/abi2xmlbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:name": "abi2xml", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://abi2xml.sourceforge.net/", "sc:version": "1.2" diff --git a/data/abiview/abiviewbioschemas.jsonld b/data/abiview/abiviewbioschemas.jsonld index bdd4fef1031c1..18540928d79c0 100644 --- a/data/abiview/abiviewbioschemas.jsonld +++ b/data/abiview/abiviewbioschemas.jsonld @@ -12,23 +12,23 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "UK BBSRC", - "EMBOSS Contributors", "Wellcome Trust", + "EMBOSS Contributors", + "UK BBSRC", "UK MRC" ], "sc:description": "Display the trace in an ABI sequencer file.", "sc:funder": [ - "UK MRC", "UK BBSRC", + "UK MRC", "Wellcome Trust" ], "sc:license": "GPL-3.0", "sc:name": "abiview", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:provider": [ "EMBOSS", diff --git a/data/abiview_ws_husar/abiview_ws_husarbioschemas.jsonld b/data/abiview_ws_husar/abiview_ws_husarbioschemas.jsonld index 64632d38f012c..4f8ca40dd7688 100644 --- a/data/abiview_ws_husar/abiview_ws_husarbioschemas.jsonld +++ b/data/abiview_ws_husar/abiview_ws_husarbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "This tool reads in an ABI sequence trace file and graphically displays the results.", "sc:name": "abiview WS (husar)", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://genius.embnet.dkfz-heidelberg.de/menu/hobit/embdoc/abiview.html", "sc:version": "1" diff --git a/data/abm-tki/abm-tkibioschemas.jsonld b/data/abm-tki/abm-tkibioschemas.jsonld index 4ac7e44fb282a..ea2851b0de28d 100644 --- a/data/abm-tki/abm-tkibioschemas.jsonld +++ b/data/abm-tki/abm-tkibioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Employing agent-based model (ABM) tool to simulate brain tumor growth that includes an EGFR signaling pathway together with a related cell-cycle pathway, angiogenesis and tyrosine kinase inhibitors (TKIs) treatment. The users can apply this tool to predict the responses of brain cancer to TKIs, and to reveal the dual role of angiogenesis during TKI treatment.", "sc:name": "ABM-TKI", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "https://sites.google.com/site/agentbasedtumormodeling/home" diff --git a/data/abmapper/abmapperbioschemas.jsonld b/data/abmapper/abmapperbioschemas.jsonld index a90245d6b2e22..4d30db303b5ec 100644 --- a/data/abmapper/abmapperbioschemas.jsonld +++ b/data/abmapper/abmapperbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Portable, easy-to-use package for spliced alignment, junction site detection, and reads mapping.", "sc:name": "ABMapper", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://www.hkbic.cuhk.edu.hk/software/abmapper" } \ No newline at end of file diff --git a/data/abps/abpsbioschemas.jsonld b/data/abps/abpsbioschemas.jsonld index b66d396edc0cf..dfcd0840a26d7 100644 --- a/data/abps/abpsbioschemas.jsonld +++ b/data/abps/abpsbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.3389/fphys.2018.01638", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/ABPS", "@type": "sc:SoftwareApplication", @@ -16,24 +20,20 @@ "sc:additionalType": "Library", "sc:citation": [ "pmcid:PMC6258961", - "pubmed:30519191", { "@id": "https://doi.org/10.3389/fphys.2018.01638" - } + }, + "pubmed:30519191" ], "sc:description": "R Package for Calculating the Abnormal Blood Profile Score.", "sc:license": "GPL-3.0", "sc:name": "ABPS", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "https://cran.r-project.org/package=ABPS" - }, - { - "@id": "https://doi.org/10.3389/fphys.2018.01638", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/abra/abrabioschemas.jsonld b/data/abra/abrabioschemas.jsonld index 6fdbb0fb5dd95..5ba0dad3249aa 100644 --- a/data/abra/abrabioschemas.jsonld +++ b/data/abra/abrabioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Realigner for next generation sequencing data. It uses localized assembly and global realignment to align reads more accurately, thus improving downstream analysis (detection of indels and complex variants in particular).", "sc:name": "ABRA", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://github.com/mozack/abra" } \ No newline at end of file diff --git a/data/abs-scan/abs-scanbioschemas.jsonld b/data/abs-scan/abs-scanbioschemas.jsonld index 49b3d430e9f4b..8560ba09b5344 100644 --- a/data/abs-scan/abs-scanbioschemas.jsonld +++ b/data/abs-scan/abs-scanbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "ABS-Scan", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://proline.biochem.iisc.ernet.in/abscan/" } \ No newline at end of file diff --git a/data/abs/absbioschemas.jsonld b/data/abs/absbioschemas.jsonld index adb914b40a37f..cb700395e8277 100644 --- a/data/abs/absbioschemas.jsonld +++ b/data/abs/absbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:license": "GPL-2.0", "sc:name": "ABS", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:provider": "Genome BioInformatics Research Lab", "sc:url": "http://genome.imim.es/datasets/abs2005/" diff --git a/data/absseq/absseqbioschemas.jsonld b/data/absseq/absseqbioschemas.jsonld index c7117c7f23aa1..86a0838b48228 100644 --- a/data/absseq/absseqbioschemas.jsonld +++ b/data/absseq/absseqbioschemas.jsonld @@ -22,48 +22,48 @@ }, "edam:has_output": [ { - "@id": "edam:data_2884" + "@id": "edam:data_0950" }, { - "@id": "edam:data_0950" + "@id": "edam:data_2884" } ], "sc:additionalType": [ "Command-line tool", - "Library", - "Plug-in" + "Plug-in", + "Library" ], "sc:applicationSubCategory": [ { "@id": "edam:topic_3170" }, { - "@id": "edam:topic_0203" + "@id": "edam:topic_2269" }, { - "@id": "edam:topic_2269" + "@id": "edam:topic_0203" } ], "sc:citation": [ - "pmcid:PMC4973090", + "pubmed:27488180", { "@id": "https://doi.org/10.1186/s12864-016-2848-2" }, - "pubmed:27488180" + "pmcid:PMC4973090" ], "sc:description": "An R package which provides RNA-Seq analysis based on modelling absolute expression differences.", "sc:featureList": [ { - "@id": "edam:operation_2238" + "@id": "edam:operation_2426" }, { - "@id": "edam:operation_2426" + "@id": "edam:operation_3223" }, { "@id": "edam:operation_0337" }, { - "@id": "edam:operation_3223" + "@id": "edam:operation_2238" }, { "@id": "edam:operation_2495" @@ -72,9 +72,9 @@ "sc:license": "GPL-3.0", "sc:name": "ABSSeq", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ABSSeq.html", "sc:version": "1.10.0" diff --git a/data/abyss/abyssbioschemas.jsonld b/data/abyss/abyssbioschemas.jsonld index 55611115536e5..8f95f673fcbf0 100644 --- a/data/abyss/abyssbioschemas.jsonld +++ b/data/abyss/abyssbioschemas.jsonld @@ -20,8 +20,8 @@ "Mac" ], "sc:provider": [ - "bcgsc.ca", - "BC Cancer Agency Genome Sciences Centre" + "BC Cancer Agency Genome Sciences Centre", + "bcgsc.ca" ], "sc:url": "https://github.com/bcgsc/abyss/", "sc:version": "1.9.0" diff --git a/data/acacia/acaciabioschemas.jsonld b/data/acacia/acaciabioschemas.jsonld index 6081188d46d71..ec827a01408f4 100644 --- a/data/acacia/acaciabioschemas.jsonld +++ b/data/acacia/acaciabioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "ACACIA", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://gitlab.com/psc_santos/ACACIA" } \ No newline at end of file diff --git a/data/acd/acdbioschemas.jsonld b/data/acd/acdbioschemas.jsonld index 534b3084ef805..c05804c7d9b19 100644 --- a/data/acd/acdbioschemas.jsonld +++ b/data/acd/acdbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Tool to search a knowledge base of the most commonly used chromatographic columns to locate those with the properties best-suited to the separation at hand. The Column Selector database contains information for 254 characterized columns, along with results for >4800 systematic experiments.", "sc:name": "ACD", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://www.acdlabs.com/resources/freeware/colsel/" } \ No newline at end of file diff --git a/data/acdc/acdcbioschemas.jsonld b/data/acdc/acdcbioschemas.jsonld index 5a7a43daea52d..da7842194df8d 100644 --- a/data/acdc/acdcbioschemas.jsonld +++ b/data/acdc/acdcbioschemas.jsonld @@ -12,22 +12,22 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "UK MRC", "Wellcome Trust", + "UK MRC", "UK BBSRC", "EMBOSS Contributors" ], "sc:description": "Test an application ACD file.", "sc:funder": [ - "UK MRC", + "UK BBSRC", "Wellcome Trust", - "UK BBSRC" + "UK MRC" ], "sc:license": "GPL-3.0", "sc:name": "acdc", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:provider": [ diff --git a/data/acdc_cell/acdc_cellbioschemas.jsonld b/data/acdc_cell/acdc_cellbioschemas.jsonld index 6f6016f190116..cc33b73f211b3 100644 --- a/data/acdc_cell/acdc_cellbioschemas.jsonld +++ b/data/acdc_cell/acdc_cellbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/acdc_cell", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Joel Dudley", - "Brian Kidd" + "Brian Kidd", + "Joel Dudley" ], "sc:additionalType": "Script", "sc:description": "Automated cell type discovery and classification through knowledge transfer.", diff --git a/data/acdc_estimation/acdc_estimationbioschemas.jsonld b/data/acdc_estimation/acdc_estimationbioschemas.jsonld index cecd308c9853a..97e18c8f68e5b 100644 --- a/data/acdc_estimation/acdc_estimationbioschemas.jsonld +++ b/data/acdc_estimation/acdc_estimationbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Markus Lux", "sc:additionalType": [ - "Command-line tool", - "Web application" + "Web application", + "Command-line tool" ], "sc:author": "Markus Lux", "sc:description": "A tool to test next-generation-sequencing (NGS) data from single-cell sequencing for contamination. By using sophisticated dimensionality reduction and clustering methods, it uses tetramer profiles to differentiate between different species in a given sample.", diff --git a/data/acde/acdebioschemas.jsonld b/data/acde/acdebioschemas.jsonld index 3e35706a4e622..c6f68929d580e 100644 --- a/data/acde/acdebioschemas.jsonld +++ b/data/acde/acdebioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Juan Pablo Acosta", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "This package provides a multivariate inferential analysis method for detecting DE genes. It uses artificial components, close to the data's principal components but with an exact interpretation in terms of differential genetic expression, to identify differentially expressed genes while controlling the false discovery rate (FDR).", "sc:license": "GPL-3.0", "sc:name": "acde", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/acde.html", "sc:version": "1.4.0" diff --git a/data/acdpretty/acdprettybioschemas.jsonld b/data/acdpretty/acdprettybioschemas.jsonld index 0fc949a83fc66..b48bcd05d4525 100644 --- a/data/acdpretty/acdprettybioschemas.jsonld +++ b/data/acdpretty/acdprettybioschemas.jsonld @@ -12,23 +12,23 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "EMBOSS Contributors", - "UK MRC", + "UK BBSRC", "Wellcome Trust", - "UK BBSRC" + "EMBOSS Contributors", + "UK MRC" ], "sc:description": "Correctly reformat an application ACD file.", "sc:funder": [ - "UK BBSRC", + "UK MRC", "Wellcome Trust", - "UK MRC" + "UK BBSRC" ], "sc:license": "GPL-3.0", "sc:name": "acdpretty", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:provider": [ "EMBL EBI", diff --git a/data/acdtable/acdtablebioschemas.jsonld b/data/acdtable/acdtablebioschemas.jsonld index ea16534c8c615..71481da4cbffe 100644 --- a/data/acdtable/acdtablebioschemas.jsonld +++ b/data/acdtable/acdtablebioschemas.jsonld @@ -12,27 +12,27 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "EMBOSS Contributors", - "UK MRC", + "UK BBSRC", "Wellcome Trust", - "UK BBSRC" + "EMBOSS Contributors", + "UK MRC" ], "sc:description": "Generate an HTML table of parameters from an application ACD file.", "sc:funder": [ - "Wellcome Trust", + "UK BBSRC", "UK MRC", - "UK BBSRC" + "Wellcome Trust" ], "sc:license": "GPL-3.0", "sc:name": "acdtable", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:provider": [ - "EMBOSS", - "EMBL EBI" + "EMBL EBI", + "EMBOSS" ], "sc:url": "http://emboss.open-bio.org/rel/rel6/apps/acdtable.html", "sc:version": "r6" diff --git a/data/acdtrace/acdtracebioschemas.jsonld b/data/acdtrace/acdtracebioschemas.jsonld index cce2f8a7282e0..c527dd0cb20e6 100644 --- a/data/acdtrace/acdtracebioschemas.jsonld +++ b/data/acdtrace/acdtracebioschemas.jsonld @@ -13,26 +13,26 @@ "sc:additionalType": "Command-line tool", "sc:contributor": [ "UK BBSRC", - "Wellcome Trust", "EMBOSS Contributors", + "Wellcome Trust", "UK MRC" ], "sc:description": "Trace processing of an application ACD file (for testing).", "sc:funder": [ - "UK BBSRC", "UK MRC", - "Wellcome Trust" + "Wellcome Trust", + "UK BBSRC" ], "sc:license": "GPL-3.0", "sc:name": "acdtrace", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:provider": [ - "EMBOSS", - "EMBL EBI" + "EMBL EBI", + "EMBOSS" ], "sc:url": "http://emboss.open-bio.org/rel/rel6/apps/acdtrace.html", "sc:version": "r6" diff --git a/data/acdvalid/acdvalidbioschemas.jsonld b/data/acdvalid/acdvalidbioschemas.jsonld index 8fc9fc4ce1434..8ae1d9a0fd270 100644 --- a/data/acdvalid/acdvalidbioschemas.jsonld +++ b/data/acdvalid/acdvalidbioschemas.jsonld @@ -12,27 +12,27 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "EMBOSS Contributors", + "Wellcome Trust", "UK MRC", - "UK BBSRC", - "Wellcome Trust" + "EMBOSS Contributors", + "UK BBSRC" ], "sc:description": "Validate an application ACD file.", "sc:funder": [ - "Wellcome Trust", + "UK BBSRC", "UK MRC", - "UK BBSRC" + "Wellcome Trust" ], "sc:license": "GPL-3.0", "sc:name": "acdvalid", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:provider": [ - "EMBOSS", - "EMBL EBI" + "EMBL EBI", + "EMBOSS" ], "sc:url": "http://emboss.open-bio.org/rel/rel6/apps/acdvalid.html", "sc:version": "r6" diff --git a/data/ace/acebioschemas.jsonld b/data/ace/acebioschemas.jsonld index a4c15f5558373..3665808078a84 100644 --- a/data/ace/acebioschemas.jsonld +++ b/data/ace/acebioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Corrects substitution errors in an Illumina archive using a k-mer trie.", "sc:name": "ACE", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/sheikhizadeh/ACE/" } \ No newline at end of file diff --git a/data/ace_gene/ace_genebioschemas.jsonld b/data/ace_gene/ace_genebioschemas.jsonld index 3cb5d9b4f6198..1afc7db36d565 100644 --- a/data/ace_gene/ace_genebioschemas.jsonld +++ b/data/ace_gene/ace_genebioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "It aids gene prediction accuracy evaluation. It uses GFF format to make it easy to convert gene prediction results into an analyzable format. Novel features include isoform accuracy evaluation from either the annotated gene or gene prediction perspective or both at the same time. Masking of genomic sequence which has unknown features allows gene predictions in annotated regions to be analyzed in a genomic context.", "sc:name": "AcE", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://www.bioinformatics.org/project/?group_id=39", "sc:version": "0.5" diff --git a/data/ace_insect/ace_insectbioschemas.jsonld b/data/ace_insect/ace_insectbioschemas.jsonld index eca16b1792139..227b0e9e7fca8 100644 --- a/data/ace_insect/ace_insectbioschemas.jsonld +++ b/data/ace_insect/ace_insectbioschemas.jsonld @@ -17,16 +17,16 @@ "@id": "https://bio.tools/ace_insect", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Jiapeng Luo", - "Dianhao Guo" + "Dianhao Guo", + "Jiapeng Luo" ], "sc:additionalType": "Web application", "sc:citation": [ - "pubmed:28693417", - "pmcid:PMC5504734", { "@id": "https://doi.org/10.1186/s12859-017-1741-6" - } + }, + "pmcid:PMC5504734", + "pubmed:28693417" ], "sc:description": "Efficient and sensitive tool to detect insecticide resistance-associated mutations in insect acetylcholinesterase from RNA-Seq data.", "sc:featureList": { @@ -34,9 +34,9 @@ }, "sc:name": "ACE", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://genome.zju.edu.cn/software/ace/" } diff --git a/data/acela/acelabioschemas.jsonld b/data/acela/acelabioschemas.jsonld index 260ffae69abb4..9bedac21a6b58 100644 --- a/data/acela/acelabioschemas.jsonld +++ b/data/acela/acelabioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Tool that aims to reduce the human effort required to produce a gold standard corpus of named entity (NE) annotations.", "sc:name": "ACELA", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "http://www.nactem.ac.uk/acela/" diff --git a/data/aceview/aceviewbioschemas.jsonld b/data/aceview/aceviewbioschemas.jsonld index 7faf006d80835..e9bcfa3347e9f 100644 --- a/data/aceview/aceviewbioschemas.jsonld +++ b/data/aceview/aceviewbioschemas.jsonld @@ -17,23 +17,23 @@ "@id": "https://bio.tools/aceview", "@type": "sc:SoftwareApplication", "edam:has_input": [ - { - "@id": "edam:data_2292" - }, { "@id": "edam:data_2803" }, { - "@id": "edam:data_1045" + "@id": "edam:data_2292" }, { - "@id": "edam:data_2704" + "@id": "edam:data_1045" }, { "@id": "edam:data_1027" }, { "@id": "edam:data_1026" + }, + { + "@id": "edam:data_2704" } ], "edam:has_output": [ @@ -41,10 +41,10 @@ "@id": "edam:data_1276" }, { - "@id": "edam:data_0916" + "@id": "edam:data_3134" }, { - "@id": "edam:data_3134" + "@id": "edam:data_0916" } ], "sc:additionalType": "Database portal", @@ -57,11 +57,11 @@ } ], "sc:citation": [ - "pmcid:PMC3272079", "pubmed:20064451", { "@id": "https://doi.org/10.1016/j.immuni.2009.10.008" - } + }, + "pmcid:PMC3272079" ], "sc:description": "A curated, comprehensive and non-redundant sequence representation of all public mRNA sequences (mRNAs from GenBank or RefSeq, and single pass cDNA sequences from dbEST and Trace).", "sc:featureList": { @@ -69,9 +69,9 @@ }, "sc:name": "AceView genes database", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:provider": "NCBI", "sc:url": "http://www.ncbi.nlm.nih.gov/IEB/Research/Acembly/" diff --git a/data/acg/acgbioschemas.jsonld b/data/acg/acgbioschemas.jsonld index 5f58a5dcbb4a9..dbd254de9786c 100644 --- a/data/acg/acgbioschemas.jsonld +++ b/data/acg/acgbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "ACG", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://arup.utah.edu/acg/" } \ No newline at end of file diff --git a/data/acgh/acghbioschemas.jsonld b/data/acgh/acghbioschemas.jsonld index 26d4bd1be55cc..4ecb212731920 100644 --- a/data/acgh/acghbioschemas.jsonld +++ b/data/acgh/acghbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-2.0", "sc:name": "aCGH", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/aCGH.html", "sc:version": "1.52.0" diff --git a/data/acme/acmebioschemas.jsonld b/data/acme/acmebioschemas.jsonld index d408e1f674809..8ad471c74b883 100644 --- a/data/acme/acmebioschemas.jsonld +++ b/data/acme/acmebioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0002-8991-6458", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/acme", "@type": "sc:SoftwareApplication", @@ -16,24 +20,20 @@ "@id": "http://orcid.org/0000-0002-8991-6458" }, "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:citation": "pubmed:16939795", "sc:description": "Set of tools for analysing tiling array ChIP/chip, DNAse hypersensitivity, or other experiments that result in regions of the genome showing \"enrichment\". It does not rely on a specific array technology (although the array should be a \"tiling\" array), is very general (can be applied in experiments resulting in regions of enrichment), and is very insensitive to array noise or normalization methods. It is fast and can be applied on whole-genome tiling array experiments easily with enough memory.", "sc:license": "GPL-2.0", "sc:name": "ACME", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ACME.html", "sc:version": "2.30.0" - }, - { - "@id": "http://orcid.org/0000-0002-8991-6458", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/acpp/acppbioschemas.jsonld b/data/acpp/acppbioschemas.jsonld index 7c470d7185c5d..5adc0f42eb85f 100644 --- a/data/acpp/acppbioschemas.jsonld +++ b/data/acpp/acppbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://orcid.org/0000-0001-5145-0384", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/ACPP", "@type": "sc:SoftwareApplication", @@ -21,10 +25,6 @@ "sc:name": "ACPP", "sc:operatingSystem": "Linux", "sc:url": "https://github.com/brsaran/ACPP" - }, - { - "@id": "https://orcid.org/0000-0001-5145-0384", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/acpred/acpredbioschemas.jsonld b/data/acpred/acpredbioschemas.jsonld index a9bd6d9d942fd..c7d6086f400d2 100644 --- a/data/acpred/acpredbioschemas.jsonld +++ b/data/acpred/acpredbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:license": "Unlicense", "sc:name": "ACPred", "sc:operatingSystem": [ - "Windows", "Mac", + "Windows", "Linux" ], "sc:url": "http://codes.bio/acpred/" diff --git a/data/act/actbioschemas.jsonld b/data/act/actbioschemas.jsonld index 5220bd42d8192..ed11785e8f81c 100644 --- a/data/act/actbioschemas.jsonld +++ b/data/act/actbioschemas.jsonld @@ -14,33 +14,33 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ { - "@id": "https://orcid.org/0000-0002-0519-3820" + "@id": "https://orcid.org/0000-0001-8991-8712" }, { - "@id": "https://orcid.org/0000-0001-8991-8712" + "@id": "https://orcid.org/0000-0002-0519-3820" } ], "sc:additionalType": "Web application", "sc:citation": [ - "pmcid:PMC1538833", - "pubmed:16623895", "pubmed:16845059", { "@id": "https://doi.org/10.1093/nar/gkl204" - } + }, + "pubmed:16623895", + "pmcid:PMC1538833" ], "sc:description": "Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis", "sc:name": "Arabidopsis Co-expression Tool (ACT)", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "https://www.michalopoulos.net/act/", "sc:version": "II" }, { - "@id": "https://orcid.org/0000-0001-8991-8712", + "@id": "https://orcid.org/0000-0002-0519-3820", "@type": "schema:Person" }, { @@ -48,7 +48,7 @@ "@type": "sc:CreativeWork" }, { - "@id": "https://orcid.org/0000-0002-0519-3820", + "@id": "https://orcid.org/0000-0001-8991-8712", "@type": "schema:Person" } ] diff --git a/data/activedriver/activedriverbioschemas.jsonld b/data/activedriver/activedriverbioschemas.jsonld index 6ac6cf55de7fa..60fed18f03efa 100644 --- a/data/activedriver/activedriverbioschemas.jsonld +++ b/data/activedriver/activedriverbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://orcid.org/0000-0002-2299-2309", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/ActiveDriver", "@type": "sc:SoftwareApplication", @@ -31,6 +27,10 @@ ], "sc:url": "http://reimandlab.org/software/activedriver/", "sc:version": "1.0.0" + }, + { + "@id": "https://orcid.org/0000-0002-2299-2309", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/ad-enm/ad-enmbioschemas.jsonld b/data/ad-enm/ad-enmbioschemas.jsonld index b6a4c5eddd1d5..473e2fe6c9187 100644 --- a/data/ad-enm/ad-enmbioschemas.jsonld +++ b/data/ad-enm/ad-enmbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Analysis of Dynamics of Elastic Network Model (AD-ENM) predicts the conformational changes a given protein structure can undergo.", "sc:name": "AD-ENM", "sc:operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "sc:url": "http://enm.lobos.nih.gov" } \ No newline at end of file diff --git a/data/adacgh2/adacgh2bioschemas.jsonld b/data/adacgh2/adacgh2bioschemas.jsonld index aa09939b9b6da..feeb31cce84a9 100644 --- a/data/adacgh2/adacgh2bioschemas.jsonld +++ b/data/adacgh2/adacgh2bioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0002-6637-9039", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/adacgh2", "@type": "sc:SoftwareApplication", @@ -16,8 +20,8 @@ "@id": "http://orcid.org/0000-0002-6637-9039" }, "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:citation": "pubmed:24532724", "sc:description": "Analysis and plotting of array CGH data. Allows usage of Circular Binary Segementation, wavelet-based smoothing (both as in Liu et al., and HaarSeg as in Ben-Yaacov and Eldar), HMM, BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking or with clusters, including MPI and sockets clusters) and use ff for storing data.", @@ -29,10 +33,6 @@ ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ADaCGH2.html", "sc:version": "2.14.0" - }, - { - "@id": "http://orcid.org/0000-0002-6637-9039", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/adapter_removal/adapter_removalbioschemas.jsonld b/data/adapter_removal/adapter_removalbioschemas.jsonld index 71e42c881ba81..989768abd7341 100644 --- a/data/adapter_removal/adapter_removalbioschemas.jsonld +++ b/data/adapter_removal/adapter_removalbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Removes adaptor fragments from raw short read sequence data and outputs data to FASTA format.", "sc:name": "ADAPTER REMOVAL", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "http://srna-workbench.cmp.uea.ac.uk/tools/helper-tools/adapter-removal" diff --git a/data/adaptest/adaptestbioschemas.jsonld b/data/adaptest/adaptestbioschemas.jsonld index fcc878e55ce49..6cb26abeb0e6f 100644 --- a/data/adaptest/adaptestbioschemas.jsonld +++ b/data/adaptest/adaptestbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "GPL-2.0", "sc:name": "adaptest", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/adaptest.html", diff --git a/data/adaptml/adaptmlbioschemas.jsonld b/data/adaptml/adaptmlbioschemas.jsonld index e873d28635503..c3d7f63e1d1d2 100644 --- a/data/adaptml/adaptmlbioschemas.jsonld +++ b/data/adaptml/adaptmlbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Software package that will automatically partition groups of gene sequences according to both their genetic and ecological similarity.", "sc:name": "AdaptML", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://almlab.mit.edu/adaptml.html" diff --git a/data/adapts/adaptsbioschemas.jsonld b/data/adapts/adaptsbioschemas.jsonld index 3e3c7c6dbfc9f..8f8cfa18d4ece 100644 --- a/data/adapts/adaptsbioschemas.jsonld +++ b/data/adapts/adaptsbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "MIT", "sc:name": "ADAPTS", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "https://cran.r-project.org/web/packages/ADAPTS" diff --git a/data/adat/adatbioschemas.jsonld b/data/adat/adatbioschemas.jsonld index 5b6f2fcfc3460..1b2341b854d5e 100644 --- a/data/adat/adatbioschemas.jsonld +++ b/data/adat/adatbioschemas.jsonld @@ -9,42 +9,42 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.5334/jors.166", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/adat", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Foo Cheung", "sc:additionalType": [ - "Command-line tool", - "Web application" + "Web application", + "Command-line tool" ], "sc:citation": [ - "pubmed:29951204", { "@id": "https://doi.org/10.5334/jors.166" }, - "pmcid:PMC6017986" + "pmcid:PMC6017986", + "pubmed:29951204" ], "sc:description": "Web Tool for Navigating and Plotting SomaLogic ADAT Files.", "sc:featureList": [ { - "@id": "edam:operation_2495" + "@id": "edam:operation_2939" }, { - "@id": "edam:operation_2939" + "@id": "edam:operation_2495" } ], "sc:license": "Apache-2.0", "sc:name": "ADAT", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "https://foocheung.shinyapps.io/adat/" - }, - { - "@id": "https://doi.org/10.5334/jors.166", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/adenosiland/adenosilandbioschemas.jsonld b/data/adenosiland/adenosilandbioschemas.jsonld index b986221f0c98a..75120e9cf5b3e 100644 --- a/data/adenosiland/adenosilandbioschemas.jsonld +++ b/data/adenosiland/adenosilandbioschemas.jsonld @@ -18,8 +18,8 @@ "sc:description": "Adenosiland represents the first attempt of an integrated bioinformatics and chemoinformatics web-resource dedicated to adenosine receptors. This informatics platform provides a wide-ranging of structure based and ligand based query functions to facilitate the exploration of adenosine receptor structures from primary sequences to three-dimensional architectures. Here, we present an overview of Adenosiland platform describing the most valuable searching tools and their functionalities.", "sc:name": "Adenosiland", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:provider": "ELIXIR-ITA-PADOVA", diff --git a/data/adepth/adepthbioschemas.jsonld b/data/adepth/adepthbioschemas.jsonld index 2f75be7104455..73a2b7a386db9 100644 --- a/data/adepth/adepthbioschemas.jsonld +++ b/data/adepth/adepthbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Adepth web server provides both depth and height representation of an atom in a macromolecule; it is capable of computing isosurfaces for atomic depths and presenting graphical view of marcomolecular shape at some distance away from the surface.", "sc:name": "Adepth", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://biodev.cea.fr/adepth" } \ No newline at end of file diff --git a/data/adeptus/adeptusbioschemas.jsonld b/data/adeptus/adeptusbioschemas.jsonld index 8548709bf7898..099366b5ca672 100644 --- a/data/adeptus/adeptusbioschemas.jsonld +++ b/data/adeptus/adeptusbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Discovery tool for disease prediction, enrichment and network analysis based on profiles from many diseases.", "sc:name": "ADEPTUS", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://adeptus.cs.tau.ac.il/home" } \ No newline at end of file diff --git a/data/adhd/adhdbioschemas.jsonld b/data/adhd/adhdbioschemas.jsonld index 563760af6d0df..cd8f5a1504b35 100644 --- a/data/adhd/adhdbioschemas.jsonld +++ b/data/adhd/adhdbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "Unlicense", "sc:name": "ADHD", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:url": "https://ufrgs.br/prodah/adhd-calculator/" } \ No newline at end of file diff --git a/data/adherer/adhererbioschemas.jsonld b/data/adherer/adhererbioschemas.jsonld index 6dbc82812984e..74242be194129 100644 --- a/data/adherer/adhererbioschemas.jsonld +++ b/data/adherer/adhererbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Computation of adherence to medications from Electronic Healthcare Data.", "sc:name": "AdhereR", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "https://cran.r-project.org/web/packages/AdhereR/index.html" } \ No newline at end of file diff --git a/data/adjustpkl/adjustpklbioschemas.jsonld b/data/adjustpkl/adjustpklbioschemas.jsonld index ac667b387f91f..bd24667de034a 100644 --- a/data/adjustpkl/adjustpklbioschemas.jsonld +++ b/data/adjustpkl/adjustpklbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "A tool for adjusting mass spectrometry peaks in PKL file. User can decide whether to shift all spectra or just a single one of the file.", "sc:name": "adjustPKL", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://blog.binfalse.de/software/adjustpkl/" } \ No newline at end of file diff --git a/data/adjutant/adjutantbioschemas.jsonld b/data/adjutant/adjutantbioschemas.jsonld index 5be866d91b201..f7e9304fd1b37 100644 --- a/data/adjutant/adjutantbioschemas.jsonld +++ b/data/adjutant/adjutantbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "MIT", "sc:name": "Adjutant", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "https://github.com/amcrisan/Adjutant" } \ No newline at end of file diff --git a/data/admetlab/admetlabbioschemas.jsonld b/data/admetlab/admetlabbioschemas.jsonld index c088bcfc4608c..6f6ee81641efd 100644 --- a/data/admetlab/admetlabbioschemas.jsonld +++ b/data/admetlab/admetlabbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Provides a user-friendly, freely available web interface for systematic ADMET evaluation of chemical compounds based on a comprehensive database consisting of 288,967 entries.", "sc:name": "ADMETlab", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://admet.scbdd.com/" } \ No newline at end of file diff --git a/data/admixmap/admixmapbioschemas.jsonld b/data/admixmap/admixmapbioschemas.jsonld index abdff38042437..5fbefddff4837 100644 --- a/data/admixmap/admixmapbioschemas.jsonld +++ b/data/admixmap/admixmapbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "ADMIXMAP", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://www.homepages.ed.ac.uk/pmckeigu/admixmap/index.html" } \ No newline at end of file diff --git a/data/admixr/admixrbioschemas.jsonld b/data/admixr/admixrbioschemas.jsonld index f4d5f473bd1ba..f6ea4502fda37 100644 --- a/data/admixr/admixrbioschemas.jsonld +++ b/data/admixr/admixrbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:license": "CC-BY-4.0", "sc:name": "admixr", "sc:operatingSystem": [ - "Windows", "Mac", + "Windows", "Linux" ], "sc:url": "https://bodkan.net/admixr/articles/tutorial.html", diff --git a/data/admixture/admixturebioschemas.jsonld b/data/admixture/admixturebioschemas.jsonld index ffbcca8870f4f..c53c55cc7af86 100644 --- a/data/admixture/admixturebioschemas.jsonld +++ b/data/admixture/admixturebioschemas.jsonld @@ -14,11 +14,11 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:citation": [ - "pmcid:PMC2752134", + "pubmed:19648217", { "@id": "https://doi.org/10.1101/gr.094052.109" }, - "pubmed:19648217" + "pmcid:PMC2752134" ], "sc:description": "Maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates using a fast numerical optimization algorithm.", "sc:featureList": { @@ -27,8 +27,8 @@ "sc:license": "Not licensed", "sc:name": "Admixture", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://software.genetics.ucla.edu/admixture/" }, diff --git a/data/admixturegraph/admixturegraphbioschemas.jsonld b/data/admixturegraph/admixturegraphbioschemas.jsonld index 1c2825fa994a4..f7f7fed21f757 100644 --- a/data/admixturegraph/admixturegraphbioschemas.jsonld +++ b/data/admixturegraph/admixturegraphbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Implements tools for building and visualising admixture graphs and for extracting equations from them. These equations can be compared to f- statistics obtained from data to test the consistency of a graph against data – for example by comparing the sign of f_4-statistics with the signs predicted by the graph – and graph parameters (edge lengths and admixture proportions) can be fitted to observed statistics.", "sc:name": "admixturegraph", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://cran.r-project.org/web/packages/admixturegraph/" } \ No newline at end of file diff --git a/data/adnuts/adnutsbioschemas.jsonld b/data/adnuts/adnutsbioschemas.jsonld index 7f8234484df18..e2291aca0d943 100644 --- a/data/adnuts/adnutsbioschemas.jsonld +++ b/data/adnuts/adnutsbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Bayesian inference using the no-U-turn (NUTS) algorithm.", "sc:name": "adnuts", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "https://cran.r-project.org/web/packages/adnuts/index.html" diff --git a/data/ads-hcspark/ads-hcsparkbioschemas.jsonld b/data/ads-hcspark/ads-hcsparkbioschemas.jsonld index ee3ef96561c64..d843835f8a770 100644 --- a/data/ads-hcspark/ads-hcsparkbioschemas.jsonld +++ b/data/ads-hcspark/ads-hcsparkbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:license": "BSD-3-Clause", "sc:name": "ADS-HCSpark", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/SCUT-CCNL/ADS-HCSpark.git" } \ No newline at end of file diff --git a/data/adsn/adsnbioschemas.jsonld b/data/adsn/adsnbioschemas.jsonld index b6aa6248280f2..24aefceba4690 100644 --- a/data/adsn/adsnbioschemas.jsonld +++ b/data/adsn/adsnbioschemas.jsonld @@ -11,18 +11,18 @@ "@id": "https://bio.tools/adsn", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Jose M. Polo", + "Enrico Petretto", "Owen J. L. Rackham", - "Enrico Petretto" + "Jose M. Polo" ], "sc:additionalType": "Web application", "sc:description": "Single Cell Brain Atlas in Human Alzheimer’s Disease.", "sc:license": "Unlicense", "sc:name": "adsn", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://adsn.ddnetbio.com" } \ No newline at end of file diff --git a/data/adsplit/adsplitbioschemas.jsonld b/data/adsplit/adsplitbioschemas.jsonld index 73d56214354ab..21076e7591193 100644 --- a/data/adsplit/adsplitbioschemas.jsonld +++ b/data/adsplit/adsplitbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Claudio Lottaz", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "This package implements clustering of microarray gene expression profiles according to functional annotations. For each term genes are annotated to, splits into two subclasses are computed and a significance of the supporting gene set is determined.", "sc:license": "GPL-2.0", "sc:name": "adSplit", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/adSplit.html", "sc:version": "1.44.0" diff --git a/data/adtex/adtexbioschemas.jsonld b/data/adtex/adtexbioschemas.jsonld index e066ae2b92623..65e2bcf0c034c 100644 --- a/data/adtex/adtexbioschemas.jsonld +++ b/data/adtex/adtexbioschemas.jsonld @@ -17,9 +17,9 @@ "sc:license": "GPL-3.0", "sc:name": "ADTEx", "sc:operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "sc:url": "http://adtex.sourceforge.net/" } \ No newline at end of file diff --git a/data/advanced_cell_classifier/advanced_cell_classifierbioschemas.jsonld b/data/advanced_cell_classifier/advanced_cell_classifierbioschemas.jsonld index be23502cc2475..5037537bf1634 100644 --- a/data/advanced_cell_classifier/advanced_cell_classifierbioschemas.jsonld +++ b/data/advanced_cell_classifier/advanced_cell_classifierbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0002-0371-7782", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/advanced_cell_classifier", "@type": "sc:SoftwareApplication", @@ -21,15 +25,11 @@ "sc:license": "GPL-3.0", "sc:name": "Advanced Cell Classifier", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://www.cellclassifier.org/" - }, - { - "@id": "http://orcid.org/0000-0002-0371-7782", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/aequatus/aequatusbioschemas.jsonld b/data/aequatus/aequatusbioschemas.jsonld index 60bc82cedd23c..a591280615fe4 100644 --- a/data/aequatus/aequatusbioschemas.jsonld +++ b/data/aequatus/aequatusbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "Aequatus", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://aequatus.tgac.ac.uk/" } \ No newline at end of file diff --git a/data/aesop/aesopbioschemas.jsonld b/data/aesop/aesopbioschemas.jsonld index 07b3245756259..a69addb08e1bf 100644 --- a/data/aesop/aesopbioschemas.jsonld +++ b/data/aesop/aesopbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1016/j.bpj.2017.04.005", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/aesop", "@type": "sc:SoftwareApplication", @@ -28,15 +32,11 @@ "sc:license": "GPL-3.0", "sc:name": "AESOP", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://aesop.readthedocs.io/en/latest/index.html" - }, - { - "@id": "https://doi.org/10.1016/j.bpj.2017.04.005", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/afal/afalbioschemas.jsonld b/data/afal/afalbioschemas.jsonld index ca78be9928adc..924a51ee20e34 100644 --- a/data/afal/afalbioschemas.jsonld +++ b/data/afal/afalbioschemas.jsonld @@ -19,11 +19,11 @@ "biotools:primaryContact": "Contact form", "sc:additionalType": "Web application", "sc:citation": [ - "pmcid:PMC4241235", { "@id": "https://doi.org/10.1007/S10822-014-9783-6" }, - "pubmed:25085083" + "pubmed:25085083", + "pmcid:PMC4241235" ], "sc:description": "Web service for profiling amino acids surrounding ligands in proteins.", "sc:featureList": { @@ -32,8 +32,8 @@ "sc:name": "AFAL", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "https://structuralbio.utalca.cl/AFAL/index.html" } diff --git a/data/affxparser/affxparserbioschemas.jsonld b/data/affxparser/affxparserbioschemas.jsonld index 2944ff1f0a904..6107253a617cf 100644 --- a/data/affxparser/affxparserbioschemas.jsonld +++ b/data/affxparser/affxparserbioschemas.jsonld @@ -20,8 +20,8 @@ "sc:name": "affxparser", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affxparser.html", "sc:version": "1.46.0" diff --git a/data/affy/affybioschemas.jsonld b/data/affy/affybioschemas.jsonld index 8dabe06ad25fd..1f5f61c50e5d1 100644 --- a/data/affy/affybioschemas.jsonld +++ b/data/affy/affybioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0001-5282-3250", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/affy", "@type": "sc:SoftwareApplication", @@ -28,18 +32,18 @@ "@id": "edam:topic_0203" }, { - "@id": "edam:topic_0092" + "@id": "edam:topic_3473" }, { - "@id": "edam:topic_3473" + "@id": "edam:topic_0092" } ], "sc:citation": [ - "pubmed:27605027", "pmcid:PMC5003452", { "@id": "https://doi.org/10.3390/microarrays3010001" - } + }, + "pubmed:27605027" ], "sc:contributor": { "@id": "http://orcid.org/0000-0001-5282-3250" @@ -51,8 +55,8 @@ "sc:license": "GPL-2.0", "sc:name": "affy", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affy.html", @@ -61,10 +65,6 @@ { "@id": "https://doi.org/10.3390/microarrays3010001", "@type": "sc:CreativeWork" - }, - { - "@id": "http://orcid.org/0000-0001-5282-3250", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/affy6cnv/affy6cnvbioschemas.jsonld b/data/affy6cnv/affy6cnvbioschemas.jsonld index 7bd7f90c4d73a..485f800fe983b 100644 --- a/data/affy6cnv/affy6cnvbioschemas.jsonld +++ b/data/affy6cnv/affy6cnvbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Affy6CNV is a pipeline for calling CNVs from Affymetrix 6.0 genotyping array data.", "sc:name": "Affy6CNV", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://sourceforge.net/projects/affy6cnv/", "sc:version": "0.0.1" diff --git a/data/affycomp/affycompbioschemas.jsonld b/data/affycomp/affycompbioschemas.jsonld index ae82b37f6f114..7239cb9c6c789 100644 --- a/data/affycomp/affycompbioschemas.jsonld +++ b/data/affycomp/affycompbioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "GPL-2.0", "sc:name": "affycomp", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affycomp.html", diff --git a/data/affycompatible/affycompatiblebioschemas.jsonld b/data/affycompatible/affycompatiblebioschemas.jsonld index ce27916bfb674..e219cf927b19d 100644 --- a/data/affycompatible/affycompatiblebioschemas.jsonld +++ b/data/affycompatible/affycompatiblebioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Martin Morgan", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.", "sc:license": "Artistic-2.0", "sc:name": "AffyCompatible", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AffyCompatible.html", "sc:version": "1.34.0" diff --git a/data/affycontam/affycontambioschemas.jsonld b/data/affycontam/affycontambioschemas.jsonld index 7c390f687d412..633559caf169f 100644 --- a/data/affycontam/affycontambioschemas.jsonld +++ b/data/affycontam/affycontambioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "Artistic-2.0", "sc:name": "affyContam", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affyContam.html", "sc:version": "1.32.0" diff --git a/data/affycoretools/affycoretoolsbioschemas.jsonld b/data/affycoretools/affycoretoolsbioschemas.jsonld index ee951b5f9a6ad..334252c0eb6c9 100644 --- a/data/affycoretools/affycoretoolsbioschemas.jsonld +++ b/data/affycoretools/affycoretoolsbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "Artistic-2.0", "sc:name": "affycoretools", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affycoretools.html", "sc:version": "1.46.2" diff --git a/data/affyexpress/affyexpressbioschemas.jsonld b/data/affyexpress/affyexpressbioschemas.jsonld index 528035ee2d3a1..5078fd3dd5408 100644 --- a/data/affyexpress/affyexpressbioschemas.jsonld +++ b/data/affyexpress/affyexpressbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-3.0", "sc:name": "AffyExpress", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AffyExpress.html", "sc:version": "1.40.0" diff --git a/data/affygcqc/affygcqcbioschemas.jsonld b/data/affygcqc/affygcqcbioschemas.jsonld index dcd5b4ce77d5a..8d77b6299710a 100644 --- a/data/affygcqc/affygcqcbioschemas.jsonld +++ b/data/affygcqc/affygcqcbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "This tool performs an Affymetrix GeneChip Quality Control by implementing a graphical representation of QC metrics recommended by Affymetrix for GeneChip oligonucleotide array technology. Most importantly, it performs extreme studentized deviate statistical tests for the set of arrays being compared in a given experiment, thus providing an objective measure for outlier detection.", "sc:name": "AffyGCQC", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://www.transcriptome.ens.fr/AffyGCQC/" diff --git a/data/affyilm/affyilmbioschemas.jsonld b/data/affyilm/affyilmbioschemas.jsonld index 5e2d932a51a07..e045772ff594d 100644 --- a/data/affyilm/affyilmbioschemas.jsonld +++ b/data/affyilm/affyilmbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Fabrice Berger", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "Preprocessing tool which estimates gene expression levels for Affymetrix Gene Chips. Input from physical chemistry is employed to first background subtract intensities before calculating concentrations on behalf of the Langmuir model.", "sc:license": "GPL-3.0", "sc:name": "affyILM", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affyILM.html", "sc:version": "1.26.0" diff --git a/data/affyio/affyiobioschemas.jsonld b/data/affyio/affyiobioschemas.jsonld index de763d560ee4f..e7dd811e21373 100644 --- a/data/affyio/affyiobioschemas.jsonld +++ b/data/affyio/affyiobioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Benjamin Milo Bolstad", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "Routines for parsing Affymetrix data files based upon file format information. Primary focus is on accessing the CEL and CDF file formats.", "sc:license": "GPL-2.0", "sc:name": "affyio", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affyio.html", "sc:version": "1.44.0" diff --git a/data/affylmgui/affylmguibioschemas.jsonld b/data/affylmgui/affylmguibioschemas.jsonld index 19d6154bb9383..6d137826c0525 100644 --- a/data/affylmgui/affylmguibioschemas.jsonld +++ b/data/affylmgui/affylmguibioschemas.jsonld @@ -9,35 +9,35 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0001-9221-2892", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/affylmgui", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Keith Satterley", { "@id": "http://orcid.org/0000-0001-9221-2892" }, - "Yifang Hu" + "Yifang Hu", + "Keith Satterley" ], "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:citation": "pubmed:16455752", "sc:description": "A Graphical User Interface for analysis of Affymetrix microarray gene expression data using the affy and limma packages.", "sc:license": "GPL-2.0", "sc:name": "affylmGUI", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affylmGUI.html", "sc:version": "1.48.0" - }, - { - "@id": "http://orcid.org/0000-0001-9221-2892", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/affymetrix_netaffx_analysis_center/affymetrix_netaffx_analysis_centerbioschemas.jsonld b/data/affymetrix_netaffx_analysis_center/affymetrix_netaffx_analysis_centerbioschemas.jsonld index 94af5939b6ea7..19dcca7a8ccba 100644 --- a/data/affymetrix_netaffx_analysis_center/affymetrix_netaffx_analysis_centerbioschemas.jsonld +++ b/data/affymetrix_netaffx_analysis_center/affymetrix_netaffx_analysis_centerbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Allows correlation of GeneChip array results with array design and annotation information; provides access to array content information, including probe sequences and gene annotations; free registration is required.", "sc:name": "Affymetrix NetAffx Analysis Center", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "http://www.affymetrix.com/analysis/index.affx" } \ No newline at end of file diff --git a/data/affypara/affyparabioschemas.jsonld b/data/affypara/affyparabioschemas.jsonld index 5466617237ffe..ac042e25206c3 100644 --- a/data/affypara/affyparabioschemas.jsonld +++ b/data/affypara/affyparabioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "GPL-3.0", "sc:name": "affyPara", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affyPara.html", diff --git a/data/affyparaebi/affyparaebibioschemas.jsonld b/data/affyparaebi/affyparaebibioschemas.jsonld index 28328957739ca..a949ac8407b16 100644 --- a/data/affyparaebi/affyparaebibioschemas.jsonld +++ b/data/affyparaebi/affyparaebibioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Aan R based pipeline for parallel pre-processing of Affymetrix TM chips. The pipeline starts from a directory containing raw CEL files files and produces Bioconductor R objects containing gene expression measurements suitable for further analysis.", "sc:name": "affyParaEBI", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://www.ebi.ac.uk/Tools/rcloud/", "sc:version": "1.0.0" diff --git a/data/affypdnn/affypdnnbioschemas.jsonld b/data/affypdnn/affypdnnbioschemas.jsonld index 1aa3df0326ead..2fdd860f54357 100644 --- a/data/affypdnn/affypdnnbioschemas.jsonld +++ b/data/affypdnn/affypdnnbioschemas.jsonld @@ -12,17 +12,17 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Laurent Gautier", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:citation": "pubmed:15509605", "sc:description": "The package contains functions to perform the PDNN method described by Li Zhang et al.", "sc:license": "GPL-3.0", "sc:name": "affypdnn", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affypdnn.html", "sc:version": "1.48.0" diff --git a/data/affyplm/affyplmbioschemas.jsonld b/data/affyplm/affyplmbioschemas.jsonld index 1718d37a4b91b..7ad8ef45993b7 100644 --- a/data/affyplm/affyplmbioschemas.jsonld +++ b/data/affyplm/affyplmbioschemas.jsonld @@ -20,8 +20,8 @@ "sc:license": "GPL-2.0", "sc:name": "affyPLM", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affyPLM.html", diff --git a/data/affyqcreport/affyqcreportbioschemas.jsonld b/data/affyqcreport/affyqcreportbioschemas.jsonld index 05f59fb558a69..dd0d10d8a0a19 100644 --- a/data/affyqcreport/affyqcreportbioschemas.jsonld +++ b/data/affyqcreport/affyqcreportbioschemas.jsonld @@ -12,15 +12,15 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Craig Parman", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "This package creates a QC report for an AffyBatch object. The report is intended to allow the user to quickly assess the quality of a set of arrays in an AffyBatch object.", "sc:license": "GPL-2.0", "sc:name": "affyQCReport", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/affyQCReport.html", diff --git a/data/affyrnadegradation/affyrnadegradationbioschemas.jsonld b/data/affyrnadegradation/affyrnadegradationbioschemas.jsonld index fbd9209decf74..42ded97319540 100644 --- a/data/affyrnadegradation/affyrnadegradationbioschemas.jsonld +++ b/data/affyrnadegradation/affyrnadegradationbioschemas.jsonld @@ -18,11 +18,11 @@ "Library" ], "sc:citation": [ - "pubmed:23097420", "pmcid:PMC3530908", { "@id": "https://doi.org/10.1093/bioinformatics/bts629" - } + }, + "pubmed:23097420" ], "sc:description": "The package helps with the assessment and correction of RNA degradation effects in Affymetrix 3' expression arrays. The parameter d gives a robust and accurate measure of RNA integrity. The correction removes the probe positional bias, and thus improves comparability of samples that are affected by RNA degradation.", "sc:featureList": { @@ -32,8 +32,8 @@ "sc:name": "AffyRNADegradation", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AffyRNADegradation.html", "sc:version": "1.20.0" diff --git a/data/aflpinsilico/aflpinsilicobioschemas.jsonld b/data/aflpinsilico/aflpinsilicobioschemas.jsonld index 806f9a211948c..ea6b66bd53e56 100644 --- a/data/aflpinsilico/aflpinsilicobioschemas.jsonld +++ b/data/aflpinsilico/aflpinsilicobioschemas.jsonld @@ -20,8 +20,8 @@ "sc:description": "Simulating AFLP fingerprints.", "sc:name": "AFLPinSilico", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:provider": "ugent.be", diff --git a/data/afnetwork/afnetworkbioschemas.jsonld b/data/afnetwork/afnetworkbioschemas.jsonld index 9c74ff78ebcf0..b885c43a9d390 100644 --- a/data/afnetwork/afnetworkbioschemas.jsonld +++ b/data/afnetwork/afnetworkbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.12688/f1000research.10225.2", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/afnetwork", "@type": "sc:SoftwareApplication", @@ -44,8 +40,8 @@ "sc:name": "AFnetwork", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:softwareHelp": { "@id": "http://bioinformatics.org.au/tools/AFnetwork/READ_ME.txt" @@ -55,6 +51,10 @@ { "@id": "http://orcid.org/0000-0002-3729-8176", "@type": "schema:Person" + }, + { + "@id": "https://doi.org/10.12688/f1000research.10225.2", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/afold/afoldbioschemas.jsonld b/data/afold/afoldbioschemas.jsonld index 2f8e7253f930d..63cc7b001c594 100644 --- a/data/afold/afoldbioschemas.jsonld +++ b/data/afold/afoldbioschemas.jsonld @@ -9,22 +9,30 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://orcid.org/0000-0002-1413-913X", + "@type": "schema:Person" + }, + { + "@id": "https://doi.org/10.1186/S12864-019-5686-1", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/aFold", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Wentao Yang", { "@id": "https://orcid.org/0000-0002-1413-913X" - } + }, + "Wentao Yang" ], "sc:additionalType": "Library", "sc:citation": [ - "pubmed:31077153", - "pmcid:PMC6509820", { "@id": "https://doi.org/10.1186/S12864-019-5686-1" - } + }, + "pmcid:PMC6509820", + "pubmed:31077153" ], "sc:description": "Using polynomial uncertainty modelling for differential gene expression estimation from RNA sequencing data.", "sc:featureList": [ @@ -41,19 +49,11 @@ "sc:license": "GPL-3.0", "sc:name": "aFold", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bioconductor.org/packages/devel/bioc/html/ABSSeq.html" - }, - { - "@id": "https://orcid.org/0000-0002-1413-913X", - "@type": "schema:Person" - }, - { - "@id": "https://doi.org/10.1186/S12864-019-5686-1", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/afq-browser/afq-browserbioschemas.jsonld b/data/afq-browser/afq-browserbioschemas.jsonld index 174837987f273..7b9fb89b8d097 100644 --- a/data/afq-browser/afq-browserbioschemas.jsonld +++ b/data/afq-browser/afq-browserbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Browser-based visualization tools for AFQ results.", "sc:name": "AFQ-Browser", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "https://yeatmanlab.github.io/AFQBrowser-demo/?table[prevSort][count]=2&table[prevSort][order]=ascending&table[prevSort][key]=&table[sort][count]=2&table[sort][order]=ascending&table[sort][key]=" diff --git a/data/aftol/aftolbioschemas.jsonld b/data/aftol/aftolbioschemas.jsonld index 4b2dd975ef2fa..1bd881f987379 100644 --- a/data/aftol/aftolbioschemas.jsonld +++ b/data/aftol/aftolbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "Assembling the Fungal Tree of Life (AFTOL)", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://www.aftol.org/index.php" } \ No newline at end of file diff --git a/data/afumid/afumidbioschemas.jsonld b/data/afumid/afumidbioschemas.jsonld index dc25f3bc0733a..0f51e75bf1a3b 100644 --- a/data/afumid/afumidbioschemas.jsonld +++ b/data/afumid/afumidbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://orcid.org/0000-0002-7239-4817", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/AfumID", "@type": "sc:SoftwareApplication", @@ -21,8 +17,8 @@ }, "sc:additionalType": "Web application", "sc:citation": [ - "pmcid:PMC6529631", "pubmed:31113894", + "pmcid:PMC6529631", { "@id": "https://doi.org/10.1128/MBIO.00392-19" } @@ -30,10 +26,10 @@ "sc:description": "framework for the analysis of Aspergillus fumigatus isolates based on their microsatellite profile.", "sc:featureList": [ { - "@id": "edam:operation_3797" + "@id": "edam:operation_3196" }, { - "@id": "edam:operation_3196" + "@id": "edam:operation_3797" } ], "sc:license": "Unlicense", @@ -48,6 +44,10 @@ { "@id": "https://doi.org/10.1128/MBIO.00392-19", "@type": "sc:CreativeWork" + }, + { + "@id": "https://orcid.org/0000-0002-7239-4817", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/agdex/agdexbioschemas.jsonld b/data/agdex/agdexbioschemas.jsonld index 65af82ebad4f9..3586d821bdac6 100644 --- a/data/agdex/agdexbioschemas.jsonld +++ b/data/agdex/agdexbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Cuilan lani Gao", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "A tool to evaluate agreement of differential expression for cross-species genomics.", "sc:license": "GPL-2.0", "sc:name": "AGDEX", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AGDEX.html", "sc:version": "1.22.0" diff --git a/data/agenda/agendabioschemas.jsonld b/data/agenda/agendabioschemas.jsonld index 8c42857679343..e1c4a2a87741f 100644 --- a/data/agenda/agendabioschemas.jsonld +++ b/data/agenda/agendabioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "AGenDA is a web tool that compares the genomic sequences from evolutionarily related organisms in order to make gene predictions. It takes pairs of genomic sequences as input, aligns the sequences, and makes predictions based on splice signals, start and stop codons, and areas of conserved sequence.", "sc:name": "AGenDA", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://bibiserv.techfak.uni-bielefeld.de/agenda/" } \ No newline at end of file diff --git a/data/agestructure/agestructurebioschemas.jsonld b/data/agestructure/agestructurebioschemas.jsonld index b2cf9bf6e5edb..5b0f720622507 100644 --- a/data/agestructure/agestructurebioschemas.jsonld +++ b/data/agestructure/agestructurebioschemas.jsonld @@ -17,9 +17,9 @@ "sc:license": "Unlicense", "sc:name": "AgeStructure", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://www.zsl.org/science/software/agestructure" } \ No newline at end of file diff --git a/data/aggloindel/aggloindelbioschemas.jsonld b/data/aggloindel/aggloindelbioschemas.jsonld index ca1a22910fd45..621dd321934df 100644 --- a/data/aggloindel/aggloindelbioschemas.jsonld +++ b/data/aggloindel/aggloindelbioschemas.jsonld @@ -18,14 +18,14 @@ "sc:description": "This tool to detect structural variations is specifically designed to cluster short-read paired-end data into possibly overlapping predictions for deletions and insertions. It does not make any assumptions on the composition of the data, such as the number of samples, heterogeneity or polyploidy. Taking paired ends mapped to a reference genome as input, it merges mappings to clusters based on a similarity score that takes both the putative location and size of an indel into account.", "sc:name": "AggloIndel", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:provider": [ "CeBiTec", - "Bielefeld University", - "BiBiServ" + "BiBiServ", + "Bielefeld University" ], "sc:url": "http://bibiserv.cebitec.uni-bielefeld.de/agglodel", "sc:version": "1" diff --git a/data/aggregate_scores_in_intervals/aggregate_scores_in_intervalsbioschemas.jsonld b/data/aggregate_scores_in_intervals/aggregate_scores_in_intervalsbioschemas.jsonld index e6b5b119fb7e7..07a8b9ac97acc 100644 --- a/data/aggregate_scores_in_intervals/aggregate_scores_in_intervalsbioschemas.jsonld +++ b/data/aggregate_scores_in_intervals/aggregate_scores_in_intervalsbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Such as phastCons, GERP, binCons, and others for a set of genomic intervals.", "sc:name": "aggregate_scores_in_intervals", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "https://github.com/bxlab/bx-python", diff --git a/data/aggrescan3d/aggrescan3dbioschemas.jsonld b/data/aggrescan3d/aggrescan3dbioschemas.jsonld index 44aa64109e2b6..313b40d3b40ff 100644 --- a/data/aggrescan3d/aggrescan3dbioschemas.jsonld +++ b/data/aggrescan3d/aggrescan3dbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/Aggrescan3D", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Michal Jamroz", - "Rafael Zambran" + "Rafael Zambran", + "Michal Jamroz" ], "sc:additionalType": "Command-line tool", "sc:citation": "pubmed:30825368", @@ -20,9 +20,9 @@ "sc:license": "MIT", "sc:name": "Aggrescan3D", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://biocomp.chem.uw.edu.pl/A3D/" } \ No newline at end of file diff --git a/data/agilp/agilpbioschemas.jsonld b/data/agilp/agilpbioschemas.jsonld index aabecec314597..086d05fdd24f6 100644 --- a/data/agilp/agilpbioschemas.jsonld +++ b/data/agilp/agilpbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "GPL-3.0", "sc:name": "agilp", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/agilp.html", diff --git a/data/agimicrorna/agimicrornabioschemas.jsonld b/data/agimicrorna/agimicrornabioschemas.jsonld index 59b2d47f6370c..4e24547649693 100644 --- a/data/agimicrorna/agimicrornabioschemas.jsonld +++ b/data/agimicrorna/agimicrornabioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-3.0", "sc:name": "AgiMicroRna", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AgiMicroRna.html", "sc:version": "2.24.0" diff --git a/data/agotool/agotoolbioschemas.jsonld b/data/agotool/agotoolbioschemas.jsonld index 26c5228512785..b0462eccf9749 100644 --- a/data/agotool/agotoolbioschemas.jsonld +++ b/data/agotool/agotoolbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "aGOtool", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://agotool.sund.ku.dk", "sc:version": "0.1" diff --git a/data/agplus/agplusbioschemas.jsonld b/data/agplus/agplusbioschemas.jsonld index 4fea8b187bb00..904f0a44d10a4 100644 --- a/data/agplus/agplusbioschemas.jsonld +++ b/data/agplus/agplusbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Simple command-line tool that enables rapid and flexible production of text tables tailored for aggregation plots from which users can easily design multiple groups based on user-definitions such as regulatory regions or transcription initiation sites.", "sc:name": "agplus", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/kazumits/agplus" } \ No newline at end of file diff --git a/data/agrigo/agrigobioschemas.jsonld b/data/agrigo/agrigobioschemas.jsonld index 0d83c6abbc11b..3d8b31476fdec 100644 --- a/data/agrigo/agrigobioschemas.jsonld +++ b/data/agrigo/agrigobioschemas.jsonld @@ -11,18 +11,18 @@ "@id": "https://bio.tools/agrigo", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Qi You (Bug report)", "Qi You (Administrator)", - "Tian Tian (Administrator)" + "Tian Tian (Administrator)", + "Qi You (Bug report)" ], "sc:additionalType": "Web application", "sc:citation": "pubmed:20435677", "sc:description": "Integrated gene ontology analysis toolkit for the agriculture community. Supported organisms and gene identifiers were expanded over EasyGO tool, and several tools for predicting gene function are included.", "sc:name": "agriGO", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://bioinfo.cau.edu.cn/agriGO/" } \ No newline at end of file diff --git a/data/agris/agrisbioschemas.jsonld b/data/agris/agrisbioschemas.jsonld index 26336fcce7496..673bc447ab760 100644 --- a/data/agris/agrisbioschemas.jsonld +++ b/data/agris/agrisbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AGRIS", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://arabidopsis.med.ohio-state.edu/" } \ No newline at end of file diff --git a/data/ahtpdb/ahtpdbbioschemas.jsonld b/data/ahtpdb/ahtpdbbioschemas.jsonld index 1ce7a51416d1c..8100266709117 100644 --- a/data/ahtpdb/ahtpdbbioschemas.jsonld +++ b/data/ahtpdb/ahtpdbbioschemas.jsonld @@ -9,17 +9,21 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1093/nar/gku1141", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/ahtpdb", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "DR. Gajendra P. S. Raghava", "sc:additionalType": "Database portal", "sc:citation": [ + "pubmed:25392419", "pmcid:PMC4383949", { "@id": "https://doi.org/10.1093/nar/gku1141" - }, - "pubmed:25392419" + } ], "sc:description": "Manually curated database of experimentally validated Antihypertensive peptides (AHTPs) with comprehensive information that includes: sequence, inhibitory concentration (IC50), log value of inhibitory concentration (pIC50) and toxicity.", "sc:featureList": { @@ -27,10 +31,6 @@ }, "sc:name": "AHTPDB", "sc:url": "http://crdd.osdd.net/raghava/ahtpdb/index.php" - }, - { - "@id": "https://doi.org/10.1093/nar/gku1141", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/ai_ti-rads/ai_ti-radsbioschemas.jsonld b/data/ai_ti-rads/ai_ti-radsbioschemas.jsonld index 95990cc9b2055..1598e4336891b 100644 --- a/data/ai_ti-rads/ai_ti-radsbioschemas.jsonld +++ b/data/ai_ti-rads/ai_ti-radsbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:license": "CC-BY-NC-SA-4.0", "sc:name": "AI TI-RADS", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://deckard.duhs.duke.edu/~ai-ti-rads" diff --git a/data/aicd/aicdbioschemas.jsonld b/data/aicd/aicdbioschemas.jsonld index 1d5ed48089ff4..3eed704c611b6 100644 --- a/data/aicd/aicdbioschemas.jsonld +++ b/data/aicd/aicdbioschemas.jsonld @@ -23,8 +23,8 @@ ], "sc:additionalType": "Web application", "sc:citation": [ - "pubmed:31123286", "pmcid:PMC6533287", + "pubmed:31123286", { "@id": "https://doi.org/10.1038/S41598-019-44227-X" } @@ -44,9 +44,9 @@ "sc:license": "CC-BY-4.0", "sc:name": "AICD", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://956023.ichengyun.net/AICD/index.php" } diff --git a/data/aims/aimsbioschemas.jsonld b/data/aims/aimsbioschemas.jsonld index a91fb21c91b25..a05299d907215 100644 --- a/data/aims/aimsbioschemas.jsonld +++ b/data/aims/aimsbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "Artistic-2.0", "sc:name": "AIMS", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AIMS.html", "sc:version": "1.6.0" diff --git a/data/airlab/airlabbioschemas.jsonld b/data/airlab/airlabbioschemas.jsonld index 89c160f7a7c92..77570e6ebd91b 100644 --- a/data/airlab/airlabbioschemas.jsonld +++ b/data/airlab/airlabbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "CC-BY-4.0", "sc:name": "AirLab", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "http://www.airlaboratory.ch/#/" diff --git a/data/aivar/aivarbioschemas.jsonld b/data/aivar/aivarbioschemas.jsonld index 4b941f08ea2f2..c40d479ff126c 100644 --- a/data/aivar/aivarbioschemas.jsonld +++ b/data/aivar/aivarbioschemas.jsonld @@ -11,9 +11,9 @@ "@id": "https://bio.tools/AIVAR", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Jiaqi Luo", + "Jianfeng Sang", "Yujian Shi", - "Jianfeng Sang" + "Jiaqi Luo" ], "sc:additionalType": "Command-line tool", "sc:citation": "pubmed:31141141", @@ -21,9 +21,9 @@ "sc:license": "Unlicense", "sc:name": "AIVAR", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://github.com/TopGene/AIvar" } \ No newline at end of file diff --git a/data/akid/akidbioschemas.jsonld b/data/akid/akidbioschemas.jsonld index ba09f693659ce..68db5252716dc 100644 --- a/data/akid/akidbioschemas.jsonld +++ b/data/akid/akidbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Luca Parca", "sc:additionalType": [ - "Command-line tool", - "Web service" + "Web service", + "Command-line tool" ], "sc:description": "AKID is a Deep Neural Network-based method that identifies kinase-specific phosphorylation events at single-kinase level in any given Eukaryotic proteome without prior functional annotation. It automatically detects kinase domains, their residues responsible for target specificity and finally their target peptides.", "sc:name": "AKID", diff --git a/data/aksmooth/aksmoothbioschemas.jsonld b/data/aksmooth/aksmoothbioschemas.jsonld index 24c6439612e54..be004e7194cd2 100644 --- a/data/aksmooth/aksmoothbioschemas.jsonld +++ b/data/aksmooth/aksmoothbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Statistical method that can accurately and efficiently reconstruct the single CpG methylation estimate across the entire methylome using low-coverage bisulfite sequencing (Bi-Seq) data.", "sc:name": "AKSmooth", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://github.com/Junfang/AKSmooth" } \ No newline at end of file diff --git a/data/aladyn/aladynbioschemas.jsonld b/data/aladyn/aladynbioschemas.jsonld index 31d36a8017e9c..d796a789f1c09 100644 --- a/data/aladyn/aladynbioschemas.jsonld +++ b/data/aladyn/aladynbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Web server aligns pairs of protein structures by comparing their internal dynamics and detecting regions that sustain similar large-scale movements. Input is the structure files of two proteins.", "sc:name": "ALADYN", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://aladyn.escience-lab.org" } \ No newline at end of file diff --git a/data/alamut/alamutbioschemas.jsonld b/data/alamut/alamutbioschemas.jsonld index cb8140dc34873..f3f5a0ce306d9 100644 --- a/data/alamut/alamutbioschemas.jsonld +++ b/data/alamut/alamutbioschemas.jsonld @@ -18,9 +18,9 @@ "sc:license": "Proprietary", "sc:name": "Alamut", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://www.interactive-biosoftware.com/products/" } \ No newline at end of file diff --git a/data/alchemy/alchemybioschemas.jsonld b/data/alchemy/alchemybioschemas.jsonld index 06a43084c39ad..47e6950a100fa 100644 --- a/data/alchemy/alchemybioschemas.jsonld +++ b/data/alchemy/alchemybioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "ALCHEMY is a method for automated calling of diploid genotypes from raw intensity data produced by various high-throughput multiplexed SNP genotyping methods.", "sc:name": "ALCHEMY", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://alchemy.sourceforge.net/", "sc:version": "1.07" diff --git a/data/aldex2/aldex2bioschemas.jsonld b/data/aldex2/aldex2bioschemas.jsonld index 25091f627ed2a..f5f8e8b8c4899 100644 --- a/data/aldex2/aldex2bioschemas.jsonld +++ b/data/aldex2/aldex2bioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1186/2049-2618-2-15", + "@type": "sc:CreativeWork" + }, { "@id": "http://orcid.org/0000-0001-5803-3380", "@type": "schema:Person" @@ -26,8 +30,8 @@ "@id": "edam:data_0951" }, "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:applicationSubCategory": [ { @@ -38,11 +42,11 @@ } ], "sc:citation": [ - "pmcid:PMC4030730", + "pubmed:24910773", { "@id": "https://doi.org/10.1186/2049-2618-2-15" }, - "pubmed:24910773" + "pmcid:PMC4030730" ], "sc:description": "A differential abundance analysis for the comparison of two or more conditions. It uses a Dirichlet-multinomial model to infer abundance from counts, that has been optimized for three or more experimental replicates. Infers sampling variation and calculates the expected FDR given the biological and sampling variation using the Wilcox rank test and Welches t-test, or the glm and Kruskal Wallis tests. Reports both P and fdr values calculated by the Benjamini Hochberg correction.", "sc:featureList": { @@ -50,16 +54,12 @@ }, "sc:name": "ALDEx2", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ALDEx2.html", "sc:version": "1.6.0" - }, - { - "@id": "https://doi.org/10.1186/2049-2618-2-15", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/ale/alebioschemas.jsonld b/data/ale/alebioschemas.jsonld index fb7f0ed0df73c..b429e7651117d 100644 --- a/data/ale/alebioschemas.jsonld +++ b/data/ale/alebioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Automated label extraction from GEO metadata.", "sc:name": "ALE", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/wrenlab/label-extraction" } \ No newline at end of file diff --git a/data/aleaves/aleavesbioschemas.jsonld b/data/aleaves/aleavesbioschemas.jsonld index 668237e529cab..06975db3e9de6 100644 --- a/data/aleaves/aleavesbioschemas.jsonld +++ b/data/aleaves/aleavesbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Web server supports homolog collection from diverse animal genomes. An input sequence is passed through the server to collect similar sequences for molecular phylogenetic analysis.", "sc:name": "aLeaves", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://aleaves.cdb.riken.jp/" } \ No newline at end of file diff --git a/data/alevin/alevinbioschemas.jsonld b/data/alevin/alevinbioschemas.jsonld index 2f8d0b8f49b85..3dde7baff8788 100644 --- a/data/alevin/alevinbioschemas.jsonld +++ b/data/alevin/alevinbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1186/s13059-019-1670-y", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/Alevin", "@type": "sc:SoftwareApplication", @@ -27,26 +31,22 @@ "sc:description": "Tool introducing a family of algorithms for quantification and analysis of 3’ tagged-end single-cell sequencing data.", "sc:featureList": [ { - "@id": "edam:operation_2495" + "@id": "edam:operation_3200" }, { - "@id": "edam:operation_3799" + "@id": "edam:operation_2495" }, { - "@id": "edam:operation_3200" + "@id": "edam:operation_3799" } ], "sc:license": "GPL-3.0", "sc:name": "Alevin", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://salmon.readthedocs.io/en/latest/alevin.html#references" - }, - { - "@id": "https://doi.org/10.1186/s13059-019-1670-y", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/alfred-g/alfred-gbioschemas.jsonld b/data/alfred-g/alfred-gbioschemas.jsonld index 9c598cbfaf019..9965b0b263536 100644 --- a/data/alfred-g/alfred-gbioschemas.jsonld +++ b/data/alfred-g/alfred-gbioschemas.jsonld @@ -20,10 +20,10 @@ "sc:additionalType": "Command-line tool", "sc:citation": [ "pmcid:PMC5471951", - "pubmed:28617225", { "@id": "https://doi.org/10.1186/s12859-017-1658-0" - } + }, + "pubmed:28617225" ], "sc:description": "Distance Estimator for Phylogenetic Inference.", "sc:featureList": { diff --git a/data/alfresco/alfrescobioschemas.jsonld b/data/alfresco/alfrescobioschemas.jsonld index 4ccc8850963d3..e5aee27d14335 100644 --- a/data/alfresco/alfrescobioschemas.jsonld +++ b/data/alfresco/alfrescobioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Alfresco‘s (FRont-End for Sequence COmparison) aim is to develop a new visualisation tool that allows effective comparative genome sequence analysis. The program will compare multiple sequences from putitatively homologous regions in different species. Results from various different existing analysis programs, such as gene prediction, protein homology and regulatory sequence prediction programs shall be visualised and used to find corresponding sequence domains.", "sc:name": "Alfresco", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://www.sanger.ac.uk/science/tools/alfresco" } \ No newline at end of file diff --git a/data/alfy/alfybioschemas.jsonld b/data/alfy/alfybioschemas.jsonld index 2cfe629d5eee7..c1d7e0d5349a8 100644 --- a/data/alfy/alfybioschemas.jsonld +++ b/data/alfy/alfybioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Computer program for comparing one or more query DNA sequences to a set of subject sequences. For each query sequence the output consists of a list of intervals indicating the closest homologue among the set of subject sequences.", "sc:name": "alfy", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://guanine.evolbio.mpg.de/alfy/" } \ No newline at end of file diff --git a/data/algaepath/algaepathbioschemas.jsonld b/data/algaepath/algaepathbioschemas.jsonld index f37e4ce545c3c..cb7c251d20030 100644 --- a/data/algaepath/algaepathbioschemas.jsonld +++ b/data/algaepath/algaepathbioschemas.jsonld @@ -16,10 +16,10 @@ "sc:additionalType": "Database portal", "sc:citation": [ "pubmed:24628857", - "pmcid:PMC4028061", { "@id": "https://doi.org/10.1186/1471-2164-15-196" - } + }, + "pmcid:PMC4028061" ], "sc:description": "Comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae.", "sc:featureList": { @@ -27,9 +27,9 @@ }, "sc:name": "AlgaePath", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "http://algaepath.itps.ncku.edu.tw/" }, diff --git a/data/alggen/alggenbioschemas.jsonld b/data/alggen/alggenbioschemas.jsonld index b69257c8363d5..8754343fd23c9 100644 --- a/data/alggen/alggenbioschemas.jsonld +++ b/data/alggen/alggenbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Provides various tools for multiple sequence alignments, clustering, and assembly of ESTs. It also includes search tools for transcription factor binding sites (TFBS), repeated patterns, and transposons.", "sc:name": "ALGGEN", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://alggen.lsi.upc.es/" diff --git a/data/algpred/algpredbioschemas.jsonld b/data/algpred/algpredbioschemas.jsonld index e9f4a0ed695bb..5e8bfbb475362 100644 --- a/data/algpred/algpredbioschemas.jsonld +++ b/data/algpred/algpredbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Predicts allergenic proteins and maps IgE epitopes on allergenic proteins using several different approaches.", "sc:name": "AlgPred", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "http://www.imtech.res.in/raghava/algpred/" } \ No newline at end of file diff --git a/data/align-gvgd/align-gvgdbioschemas.jsonld b/data/align-gvgd/align-gvgdbioschemas.jsonld index 2a96b14b71e00..d5b43c827c0d5 100644 --- a/data/align-gvgd/align-gvgdbioschemas.jsonld +++ b/data/align-gvgd/align-gvgdbioschemas.jsonld @@ -18,9 +18,9 @@ "sc:description": "A freely available, web-based program that combines the biophysical characteristics of amino acids and protein multiple sequence alignments to predict where missense substitutions in genes of interest fall in a spectrum from enriched delterious to enriched neutral. Align-GVGD is an extension of the original Grantham difference to multiple sequence alignments and true simultaneous multiple comparisons.", "sc:name": "Align-GVGD", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://agvgd.hci.utah.edu/" } \ No newline at end of file diff --git a/data/align-paths/align-pathsbioschemas.jsonld b/data/align-paths/align-pathsbioschemas.jsonld index ad5aa9fd2659e..7eeb5720e6473 100644 --- a/data/align-paths/align-pathsbioschemas.jsonld +++ b/data/align-paths/align-pathsbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://orcid.org/0000-0002-0222-4273", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/align-paths", "@type": "sc:SoftwareApplication", @@ -24,6 +20,10 @@ "sc:name": "Align-paths", "sc:url": "https://github.com/BioDAG/align-paths", "sc:version": "1.0" + }, + { + "@id": "https://orcid.org/0000-0002-0222-4273", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/align/alignbioschemas.jsonld b/data/align/alignbioschemas.jsonld index 2fd3a71f12eed..d8694eef59b75 100644 --- a/data/align/alignbioschemas.jsonld +++ b/data/align/alignbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0003-4525-7793", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/align", "@type": "sc:SoftwareApplication", @@ -24,16 +20,20 @@ "sc:description": "Pairwise alignment tool.", "sc:name": "ALIGN", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:provider": [ - "ELIXIR-ITA-PADOVA", - "University of Padua, Department of Biomedical Sciences, BioComputing UP lab" + "University of Padua, Department of Biomedical Sciences, BioComputing UP lab", + "ELIXIR-ITA-PADOVA" ], "sc:url": "http://protein.bio.unipd.it/align2", "sc:version": "2.0" + }, + { + "@id": "http://orcid.org/0000-0003-4525-7793", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/alignace/alignacebioschemas.jsonld b/data/alignace/alignacebioschemas.jsonld index 91db512e96f63..44ebb29f8d45c 100644 --- a/data/alignace/alignacebioschemas.jsonld +++ b/data/alignace/alignacebioschemas.jsonld @@ -11,16 +11,16 @@ "@id": "https://bio.tools/alignace", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Maryanne Fenerjian (HMS Office of Technology Licensing contact)", - "Zhou Zhu (questions or comments)" + "Zhou Zhu (questions or comments)", + "Maryanne Fenerjian (HMS Office of Technology Licensing contact)" ], "sc:additionalType": "Web application", "sc:citation": "pubmed:9788350", "sc:description": "Aligns Nucleic Acid Conserved Elements; uses pattern recognition to find elements conserved in a set of DNA sequences; free for non-commercial use with license agreement.", "sc:name": "AlignACE", "sc:operatingSystem": [ - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://arep.med.harvard.edu/mrnadata/mrnasoft.html" } \ No newline at end of file diff --git a/data/aligncopy/aligncopybioschemas.jsonld b/data/aligncopy/aligncopybioschemas.jsonld index c5e0e20315a2e..9fb8e5fb6e71e 100644 --- a/data/aligncopy/aligncopybioschemas.jsonld +++ b/data/aligncopy/aligncopybioschemas.jsonld @@ -12,27 +12,27 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "UK BBSRC", "UK MRC", - "EMBOSS Contributors", - "Wellcome Trust" + "UK BBSRC", + "Wellcome Trust", + "EMBOSS Contributors" ], "sc:description": "Read and write alignments.", "sc:funder": [ "Wellcome Trust", - "UK BBSRC", - "UK MRC" + "UK MRC", + "UK BBSRC" ], "sc:license": "GPL-3.0", "sc:name": "aligncopy", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:provider": [ - "EMBL EBI", - "EMBOSS" + "EMBOSS", + "EMBL EBI" ], "sc:url": "http://emboss.open-bio.org/rel/rel6/apps/aligncopy.html", "sc:version": "r6" diff --git a/data/aligncopypair/aligncopypairbioschemas.jsonld b/data/aligncopypair/aligncopypairbioschemas.jsonld index 02c0ec7378a70..808bb8e81cdef 100644 --- a/data/aligncopypair/aligncopypairbioschemas.jsonld +++ b/data/aligncopypair/aligncopypairbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ + "UK MRC", "UK BBSRC", - "EMBOSS Contributors", "Wellcome Trust", - "UK MRC" + "EMBOSS Contributors" ], "sc:description": "Read and write pairs from alignments.", "sc:funder": [ + "UK MRC", "UK BBSRC", - "Wellcome Trust", - "UK MRC" + "Wellcome Trust" ], "sc:license": "GPL-3.0", "sc:name": "aligncopypair", diff --git a/data/alignme/alignmebioschemas.jsonld b/data/alignme/alignmebioschemas.jsonld index 1ce3aaee39e8b..358818e4258c5 100644 --- a/data/alignme/alignmebioschemas.jsonld +++ b/data/alignme/alignmebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "AlignMe", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://www.bioinfo.mpg.de/AlignMe" } \ No newline at end of file diff --git a/data/alignment-annotator/alignment-annotatorbioschemas.jsonld b/data/alignment-annotator/alignment-annotatorbioschemas.jsonld index f2f1f68fc591a..1fa0cc200dd81 100644 --- a/data/alignment-annotator/alignment-annotatorbioschemas.jsonld +++ b/data/alignment-annotator/alignment-annotatorbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Alignment Annotator is a web service which annotates and renders sequence alignments using annotation services and the PDB. The annotated and colorized alignment can be downloaded as an interactive HTML file for web browsers.", "sc:name": "Alignment-Annotator", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://www.bioinformatics.org/strap/aa/" } \ No newline at end of file diff --git a/data/alignmentcomparator/alignmentcomparatorbioschemas.jsonld b/data/alignmentcomparator/alignmentcomparatorbioschemas.jsonld index 91ba77e193253..6aa7fab7bd90e 100644 --- a/data/alignmentcomparator/alignmentcomparatorbioschemas.jsonld +++ b/data/alignmentcomparator/alignmentcomparatorbioschemas.jsonld @@ -18,9 +18,9 @@ "sc:license": "GPL-3.0", "sc:name": "AlignmentComparator", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bioinfweb.info/AlignmentComparator/", "sc:version": "1.0.0" diff --git a/data/alignsec/alignsecbioschemas.jsonld b/data/alignsec/alignsecbioschemas.jsonld index d34881a060238..be13c0da0a48f 100644 --- a/data/alignsec/alignsecbioschemas.jsonld +++ b/data/alignsec/alignsecbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Viewing protein secondary structure predictions within large multiple sequence alignments. The module is part of the ANTHEPROT package.", "sc:name": "ALIGNSEC", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://antheprot-pbil.ibcp.fr/" diff --git a/data/alignstat/alignstatbioschemas.jsonld b/data/alignstat/alignstatbioschemas.jsonld index fb0ea951b7acc..b18e27228a2aa 100644 --- a/data/alignstat/alignstatbioschemas.jsonld +++ b/data/alignstat/alignstatbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0002-2298-7593", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/alignstat", "@type": "sc:SoftwareApplication", @@ -16,15 +20,15 @@ "@id": "http://orcid.org/0000-0002-2298-7593" }, "sc:additionalType": [ - "Command-line tool", - "Web application" + "Web application", + "Command-line tool" ], "sc:citation": [ - "pmcid:PMC5081975", { "@id": "https://doi.org/10.1186/s12859-016-1300-6" }, - "pubmed:27784265" + "pubmed:27784265", + "pmcid:PMC5081975" ], "sc:description": "AlignStat is a web-tool and R package for statistical comparison of alternative multiple sequence alignments.", "sc:featureList": { @@ -33,17 +37,13 @@ "sc:license": "Other", "sc:name": "AlignStat", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://alignstat.science.latrobe.edu.au/", "sc:version": "1.3.2" }, - { - "@id": "http://orcid.org/0000-0002-2298-7593", - "@type": "schema:Person" - }, { "@id": "https://doi.org/10.1186/s12859-016-1300-6", "@type": "sc:CreativeWork" diff --git a/data/alkemio/alkemiobioschemas.jsonld b/data/alkemio/alkemiobioschemas.jsonld index 724bb7199ae8b..95ebddc671e86 100644 --- a/data/alkemio/alkemiobioschemas.jsonld +++ b/data/alkemio/alkemiobioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Jean Fred Fontaine", "sc:additionalType": [ - "Web application", - "Web service" + "Web service", + "Web application" ], "sc:description": "Chemicals prioritization for topics of interest using gene-related PubMed abstracts.", "sc:name": "Alkemio", diff --git a/data/all-fit/all-fitbioschemas.jsonld b/data/all-fit/all-fitbioschemas.jsonld index d4d160391d0ad..5f9f8b7a762b7 100644 --- a/data/all-fit/all-fitbioschemas.jsonld +++ b/data/all-fit/all-fitbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "MIT", "sc:name": "All-FIT", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "https://github.com/KhiabanianLab/All-FIT" diff --git a/data/all-p/all-pbioschemas.jsonld b/data/all-p/all-pbioschemas.jsonld index ab2c857068bc4..cac9298a1cfdf 100644 --- a/data/all-p/all-pbioschemas.jsonld +++ b/data/all-p/all-pbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Statistical framework based on a hierarchical modeling that takes into account shared peptide information for estimating protein abundances. It performs a simultaneous analysis of all the quantified peptides, handling the biological and technical errors as well as the peptide effect.", "sc:name": "ALL-P", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://pappso.inra.fr/bioinfo/all_p/index.php" diff --git a/data/allele_frequency_net/allele_frequency_netbioschemas.jsonld b/data/allele_frequency_net/allele_frequency_netbioschemas.jsonld index 33be183813496..ad8d8e989eba3 100644 --- a/data/allele_frequency_net/allele_frequency_netbioschemas.jsonld +++ b/data/allele_frequency_net/allele_frequency_netbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "Allele frequency net", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://www.allelefrequencies.net" } \ No newline at end of file diff --git a/data/alleleretain/alleleretainbioschemas.jsonld b/data/alleleretain/alleleretainbioschemas.jsonld index ef4457add7efd..32ade5560be2f 100644 --- a/data/alleleretain/alleleretainbioschemas.jsonld +++ b/data/alleleretain/alleleretainbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "R package to simulate small populations. Output includes demographic trends and information, probability of retaining a rare allele, and accumulation of inbreeding over the simulated period.", "sc:name": "AlleleRetain", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "https://sites.google.com/site/alleleretain/" } \ No newline at end of file diff --git a/data/allelicimbalance/allelicimbalancebioschemas.jsonld b/data/allelicimbalance/allelicimbalancebioschemas.jsonld index 37181bb4fc8f3..b821da2c540c7 100644 --- a/data/allelicimbalance/allelicimbalancebioschemas.jsonld +++ b/data/allelicimbalance/allelicimbalancebioschemas.jsonld @@ -9,13 +9,17 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0002-5635-2692", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/allelicimbalance", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Jesper R Gadin", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:citation": [ { @@ -34,17 +38,13 @@ "sc:license": "GPL-3.0", "sc:name": "AllelicImbalance", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AllelicImbalance.html", "sc:version": "1.12.0" }, - { - "@id": "http://orcid.org/0000-0002-5635-2692", - "@type": "schema:Person" - }, { "@id": "https://doi.org/10.1186/s12859-015-0620-2", "@type": "sc:CreativeWork" diff --git a/data/allen_brain_atlas-api/allen_brain_atlas-apibioschemas.jsonld b/data/allen_brain_atlas-api/allen_brain_atlas-apibioschemas.jsonld index b74d40c1c9f73..78eff62b6ba22 100644 --- a/data/allen_brain_atlas-api/allen_brain_atlas-apibioschemas.jsonld +++ b/data/allen_brain_atlas-api/allen_brain_atlas-apibioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Integration of gene expression data, connectivity data and neuroanatomical information for the adult and developing brain in mouse, human and non-human primate.", "sc:name": "Allen Brain Atlas-API", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://help.brain-map.org/display/api/RESTful+Model+Access+%28RMA%29", diff --git a/data/allen_brain_atlas/allen_brain_atlasbioschemas.jsonld b/data/allen_brain_atlas/allen_brain_atlasbioschemas.jsonld index 523f21dc3d02d..150304b29da34 100644 --- a/data/allen_brain_atlas/allen_brain_atlasbioschemas.jsonld +++ b/data/allen_brain_atlas/allen_brain_atlasbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "The Allen Brain Atlas (ABA) project has developed a web-based application designed to aid the intersection of neuroscience and genomics. The ABA Application enables users to access an extensive database of high resolution in situ hybridization (ISH) images from over 10,000 genes, reference atlases in both the sagittal and coronal planes, gene expression masks capturing the intensity of gene expression or signal, and the ability to search for gene expression by anatomic region.", "sc:name": "Allen Brain Atlas", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://www.brain-map.org" diff --git a/data/allerdictor/allerdictorbioschemas.jsonld b/data/allerdictor/allerdictorbioschemas.jsonld index a29f55ad8f569..34974490827c6 100644 --- a/data/allerdictor/allerdictorbioschemas.jsonld +++ b/data/allerdictor/allerdictorbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Fast and accurate sequence-based allergen prediction tool that models protein sequences as text documents and employs support vector machine in text classification for allergen prediction.", "sc:name": "Allerdictor", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://allerdictor.vbi.vt.edu/" } \ No newline at end of file diff --git a/data/allergenfp/allergenfpbioschemas.jsonld b/data/allergenfp/allergenfpbioschemas.jsonld index 11b440c459b71..9b52c372eb1fc 100644 --- a/data/allergenfp/allergenfpbioschemas.jsonld +++ b/data/allergenfp/allergenfpbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AllergenFP", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://www.ddg-pharmfac.net/AllergenFP/" } \ No newline at end of file diff --git a/data/allergome/allergomebioschemas.jsonld b/data/allergome/allergomebioschemas.jsonld index 9bfb6bd572648..a1e5806b28cc7 100644 --- a/data/allergome/allergomebioschemas.jsonld +++ b/data/allergome/allergomebioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "A platform for allergen knowledge.", "sc:name": "Allergome", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://www.allergome.org/" diff --git a/data/allertop/allertopbioschemas.jsonld b/data/allertop/allertopbioschemas.jsonld index cbecc8e8157dc..e5092cbe13e0e 100644 --- a/data/allertop/allertopbioschemas.jsonld +++ b/data/allertop/allertopbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AllerTOP", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://www.ddg-pharmfac.net/AllerTOP/" } \ No newline at end of file diff --git a/data/allim/allimbioschemas.jsonld b/data/allim/allimbioschemas.jsonld index 09d0f1562b1bb..4a8b764d383f4 100644 --- a/data/allim/allimbioschemas.jsonld +++ b/data/allim/allimbioschemas.jsonld @@ -11,9 +11,9 @@ "@id": "https://bio.tools/allim", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Ram Vinay Pandey", "Christian Schlötterer", - "Susanne U. Franssen" + "Susanne U. Franssen", + "Ram Vinay Pandey" ], "sc:additionalType": "Command-line tool", "sc:citation": "pubmed:23615333", @@ -21,8 +21,8 @@ "sc:license": "MPL-1.1", "sc:name": "Allim", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://code.google.com/p/allim/" } \ No newline at end of file diff --git a/data/allodriver/allodriverbioschemas.jsonld b/data/allodriver/allodriverbioschemas.jsonld index bc96184f005a2..b3006e03d6ad1 100644 --- a/data/allodriver/allodriverbioschemas.jsonld +++ b/data/allodriver/allodriverbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://orcid.org/0000-0002-6558-791X", + "@type": "schema:Person" + }, { "@id": "https://doi.org/10.1093/NAR/GKZ350", "@type": "sc:CreativeWork" @@ -21,19 +25,19 @@ }, "sc:additionalType": "Web application", "sc:citation": [ + "pmcid:PMC6602569", "pubmed:31069394", { "@id": "https://doi.org/10.1093/NAR/GKZ350" - }, - "pmcid:PMC6602569" + } ], "sc:description": "Method for the identification and analysis of cancer driver targets.", "sc:featureList": [ { - "@id": "edam:operation_0331" + "@id": "edam:operation_3227" }, { - "@id": "edam:operation_3227" + "@id": "edam:operation_0331" } ], "sc:license": "Unlicense", @@ -44,10 +48,6 @@ "Mac" ], "sc:url": "http://mdl.shsmu.edu.cn/ALD" - }, - { - "@id": "https://orcid.org/0000-0002-6558-791X", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/allopred/allopredbioschemas.jsonld b/data/allopred/allopredbioschemas.jsonld index 3fde315b60087..29783bb4537e0 100644 --- a/data/allopred/allopredbioschemas.jsonld +++ b/data/allopred/allopredbioschemas.jsonld @@ -20,15 +20,15 @@ "@id": "http://orcid.org/0000-0002-5154-1929" }, "sc:additionalType": [ - "Web application", - "Command-line tool" + "Command-line tool", + "Web application" ], "sc:citation": [ + "pubmed:26493317", + "pmcid:PMC4619270", { "@id": "https://doi.org/10.1186/s12859-015-0771-1" - }, - "pubmed:26493317", - "pmcid:PMC4619270" + } ], "sc:description": "Web server uses normal mode analysis and pocket features to predict allosteric pockets on proteins.", "sc:featureList": { diff --git a/data/alloscore/alloscorebioschemas.jsonld b/data/alloscore/alloscorebioschemas.jsonld index db41d172f89a8..02124ce36b811 100644 --- a/data/alloscore/alloscorebioschemas.jsonld +++ b/data/alloscore/alloscorebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "Alloscore", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://mdl.shsmu.edu.cn/alloscore/" } \ No newline at end of file diff --git a/data/allosite/allositebioschemas.jsonld b/data/allosite/allositebioschemas.jsonld index 2d68d2bda202a..c76571862d4fa 100644 --- a/data/allosite/allositebioschemas.jsonld +++ b/data/allosite/allositebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "Allosite", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://mdl.shsmu.edu.cn/AST/" } \ No newline at end of file diff --git a/data/allpaths-lg/allpaths-lgbioschemas.jsonld b/data/allpaths-lg/allpaths-lgbioschemas.jsonld index eaa48ff500adb..30a91ed812155 100644 --- a/data/allpaths-lg/allpaths-lgbioschemas.jsonld +++ b/data/allpaths-lg/allpaths-lgbioschemas.jsonld @@ -18,16 +18,16 @@ { "@id": "https://doi.org/10.1073/pnas.1017351108" }, - "pubmed:21187386", - "pmcid:PMC3029755" + "pmcid:PMC3029755", + "pubmed:21187386" ], "sc:description": "Short read assembler that works on both small and large (mammalian size) genomes.", "sc:featureList": [ { - "@id": "edam:operation_0310" + "@id": "edam:operation_3197" }, { - "@id": "edam:operation_3197" + "@id": "edam:operation_0310" } ], "sc:license": "MIT", diff --git a/data/allpaths/allpathsbioschemas.jsonld b/data/allpaths/allpathsbioschemas.jsonld index ea4b456f5fa6c..afc5a1a1c2801 100644 --- a/data/allpaths/allpathsbioschemas.jsonld +++ b/data/allpaths/allpathsbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "ALLPATHS", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://www.broadinstitute.org/computational-rd/computational-research-and-development" } \ No newline at end of file diff --git a/data/almostsignificant/almostsignificantbioschemas.jsonld b/data/almostsignificant/almostsignificantbioschemas.jsonld index 55586b131bb17..88ab10b773e5b 100644 --- a/data/almostsignificant/almostsignificantbioschemas.jsonld +++ b/data/almostsignificant/almostsignificantbioschemas.jsonld @@ -22,8 +22,8 @@ { "@id": "https://doi.org/10.1093/BIOINFORMATICS/BTW559" }, - "pmcid:PMC5167069", - "pubmed:27559158" + "pubmed:27559158", + "pmcid:PMC5167069" ], "sc:description": "Simplifying quality control of high-throughput sequencing data.", "sc:featureList": { @@ -31,8 +31,8 @@ }, "sc:name": "AlmostSignificant", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/bartongroup/AlmostSignificant" } diff --git a/data/alohomora/alohomorabioschemas.jsonld b/data/alohomora/alohomorabioschemas.jsonld index 1327e1cbb577c..e0178b875d08d 100644 --- a/data/alohomora/alohomorabioschemas.jsonld +++ b/data/alohomora/alohomorabioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Alohomora was designed to facilitate genome-wide linkage studies performed with high-density single nucleotide polymorphism (SNP) marker panels such as the Affymetrix GeneChip(R) Human Mapping 10K Array", "sc:name": "Alohomora", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://gmc.mdc-berlin.de/alohomora/", "sc:version": "0.33" diff --git a/data/alpha/alphabioschemas.jsonld b/data/alpha/alphabioschemas.jsonld index 6c834c5c9d203..517766faa93cd 100644 --- a/data/alpha/alphabioschemas.jsonld +++ b/data/alpha/alphabioschemas.jsonld @@ -18,8 +18,8 @@ "sc:description": "Automated Local PHylogenomic Analyses.", "sc:name": "ALPHA", "sc:operatingSystem": [ - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/chilleo/ALPHA" } \ No newline at end of file diff --git a/data/alphampsim/alphampsimbioschemas.jsonld b/data/alphampsim/alphampsimbioschemas.jsonld index 312dcdfb1178e..a74e7190abdba 100644 --- a/data/alphampsim/alphampsimbioschemas.jsonld +++ b/data/alphampsim/alphampsimbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Simple software package for simulating data in multi-parent populations.", "sc:name": "AlphaMPSim", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://sites.google.com/site/hickeyjohn/workstuff/alphampsim" } \ No newline at end of file diff --git a/data/alphapred/alphapredbioschemas.jsonld b/data/alphapred/alphapredbioschemas.jsonld index ac25cee39e191..057938f68bbc0 100644 --- a/data/alphapred/alphapredbioschemas.jsonld +++ b/data/alphapred/alphapredbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "This server predicts the alpha turn residues in the given protein sequence. The method is based on the neural network training on PSI-BLAST generated position specific matrices and PSIPRED predicted secondary structure.", "sc:name": "AlphaPred", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "http://www.imtech.res.in/raghava/alphapred/" } \ No newline at end of file diff --git a/data/alpine/alpinebioschemas.jsonld b/data/alpine/alpinebioschemas.jsonld index 50288337472d3..032e579cedc59 100644 --- a/data/alpine/alpinebioschemas.jsonld +++ b/data/alpine/alpinebioschemas.jsonld @@ -21,10 +21,10 @@ ], "sc:citation": [ "pmcid:PMC5143225", - "pubmed:27669167", { "@id": "https://doi.org/10.1038/nbt.3682" - } + }, + "pubmed:27669167" ], "sc:description": "Fragment sequence bias modeling and correction for RNA-seq transcript abundance estimation.", "sc:featureList": { @@ -33,9 +33,9 @@ "sc:license": "GPL-2.0", "sc:name": "alpine", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/alpine.html", "sc:version": "1.0.0" diff --git a/data/alsace/alsacebioschemas.jsonld b/data/alsace/alsacebioschemas.jsonld index c9eb9533da5e9..19b022da59c6e 100644 --- a/data/alsace/alsacebioschemas.jsonld +++ b/data/alsace/alsacebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "GPL-2.0", "sc:name": "alsace", "sc:operatingSystem": [ - "Windows", "Mac", + "Windows", "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/alsace.html", diff --git a/data/altcdfenvs/altcdfenvsbioschemas.jsonld b/data/altcdfenvs/altcdfenvsbioschemas.jsonld index 729f66ebc30ad..e49383d0fb341 100644 --- a/data/altcdfenvs/altcdfenvsbioschemas.jsonld +++ b/data/altcdfenvs/altcdfenvsbioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "GPL-2.0", "sc:name": "altcdfenvs", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/altcdfenvs.html", diff --git a/data/alter/alterbioschemas.jsonld b/data/alter/alterbioschemas.jsonld index 14f7fbf2d8f76..cfba2320447ce 100644 --- a/data/alter/alterbioschemas.jsonld +++ b/data/alter/alterbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "ALTER is a program-oriented web tool for the conversion between DNA and protein alignments.", "sc:name": "ALTER", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://sing.ei.uvigo.es/ALTER/" } \ No newline at end of file diff --git a/data/alternative_splicing_gallery/alternative_splicing_gallerybioschemas.jsonld b/data/alternative_splicing_gallery/alternative_splicing_gallerybioschemas.jsonld index 7c6233eab9bb7..bd62507a53627 100644 --- a/data/alternative_splicing_gallery/alternative_splicing_gallerybioschemas.jsonld +++ b/data/alternative_splicing_gallery/alternative_splicing_gallerybioschemas.jsonld @@ -11,17 +11,17 @@ "@id": "https://bio.tools/alternative_splicing_gallery", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Steffen Heber", - "Jeremy Leipzig" + "Jeremy Leipzig", + "Steffen Heber" ], "sc:additionalType": "Database portal", "sc:citation": "pubmed:15292448", "sc:description": "The Alternative Splicing Gallery (ASG) takes an identifier such as an EnsEMBL gene ID or a RefSeq ID as input, and provides a graph mapping splice events to transcript information. The user can also view GO information for the record, and select one or more exons and download the resulting sequence. ASG also links out to other alternative splicing databases like ProSplicer.", "sc:name": "Alternative Splicing Gallery", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://statgen.ncsu.edu/asg/" } \ No newline at end of file diff --git a/data/althapalignr/althapalignrbioschemas.jsonld b/data/althapalignr/althapalignrbioschemas.jsonld index 56526b868ac09..563bd378e931b 100644 --- a/data/althapalignr/althapalignrbioschemas.jsonld +++ b/data/althapalignr/althapalignrbioschemas.jsonld @@ -18,9 +18,9 @@ "sc:description": "Method incorporating alternate reference haplotypes to generate gene- and haplotype-level estimates of transcript abundance for any genomic region where such information is available.", "sc:name": "AltHapAlignR", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "https://github.com/jknightlab/AltHapAlignR" } \ No newline at end of file diff --git a/data/altools/altoolsbioschemas.jsonld b/data/altools/altoolsbioschemas.jsonld index 8faca24570e4d..090e21fc32743 100644 --- a/data/altools/altoolsbioschemas.jsonld +++ b/data/altools/altoolsbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/s13062-016-0110-0", - "@type": "sc:CreativeWork" - }, { "@id": "http://orcid.org/0000-0002-8874-9993", "@type": "schema:Person" @@ -25,11 +21,11 @@ }, "sc:additionalType": "Desktop application", "sc:citation": [ - "pubmed:26883204", - "pmcid:PMC4756442", { "@id": "https://doi.org/10.1186/s13062-016-0110-0" - } + }, + "pmcid:PMC4756442", + "pubmed:26883204" ], "sc:description": "Altools is a software package that allows the precise detection of polymorphisms and structural variations.", "sc:featureList": { @@ -39,6 +35,10 @@ "sc:name": "Altools", "sc:operatingSystem": "Linux", "sc:url": "https://sourceforge.net/projects/altools/" + }, + { + "@id": "https://doi.org/10.1186/s13062-016-0110-0", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/aluscancnv2/aluscancnv2bioschemas.jsonld b/data/aluscancnv2/aluscancnv2bioschemas.jsonld index 5c31954bcc389..ffcc7d7cb47eb 100644 --- a/data/aluscancnv2/aluscancnv2bioschemas.jsonld +++ b/data/aluscancnv2/aluscancnv2bioschemas.jsonld @@ -15,18 +15,18 @@ "biotools:primaryContact": "Taobo Hu", "sc:additionalType": "Library", "sc:citation": [ - "pmcid:PMC6411622", - "pubmed:30906832", { "@id": "https://doi.org/10.1016/j.gendis.2018.09.001" - } + }, + "pmcid:PMC6411622", + "pubmed:30906832" ], "sc:description": "R package for copy number variation calling and cancer risk prediction with next-generation sequencing data.", "sc:name": "AluScanCNV2", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/hutaobo/AluScanCNV2" }, diff --git a/data/alview/alviewbioschemas.jsonld b/data/alview/alviewbioschemas.jsonld index c77d1ba978719..518a62e20029b 100644 --- a/data/alview/alviewbioschemas.jsonld +++ b/data/alview/alviewbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Fast bam file viewer from the National Cancer Informatics Program.", "sc:name": "Alview", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://cbiit.nci.nih.gov/ncip" } \ No newline at end of file diff --git a/data/alvisir/alvisirbioschemas.jsonld b/data/alvisir/alvisirbioschemas.jsonld index ceeaae87bcaae..0e280f8d09ba5 100644 --- a/data/alvisir/alvisirbioschemas.jsonld +++ b/data/alvisir/alvisirbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:license": "Apache-2.0", "sc:name": "AlvisIR", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/Bibliome/alvisir" } \ No newline at end of file diff --git a/data/amas/amasbioschemas.jsonld b/data/amas/amasbioschemas.jsonld index 978929e83f787..3764c26a5f5d4 100644 --- a/data/amas/amasbioschemas.jsonld +++ b/data/amas/amasbioschemas.jsonld @@ -9,41 +9,41 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.7717/peerj.1660", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/amas", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Marek L. Borowiec", "sc:additionalType": [ - "Plug-in", - "Command-line tool" + "Command-line tool", + "Plug-in" ], "sc:citation": [ - "pmcid:PMC4734057", - "pubmed:26835189", { "@id": "https://doi.org/10.7717/peerj.1660" - } + }, + "pmcid:PMC4734057", + "pubmed:26835189" ], "sc:description": "AMAS (Alignment Manipulation And Summary), a tool that works on amino acid and nucleotide alignments and combines capabilities of sequence manipulation with a function that calculates basic statistics.", "sc:featureList": [ { - "@id": "edam:operation_2478" + "@id": "edam:operation_2479" }, { - "@id": "edam:operation_2479" + "@id": "edam:operation_2478" } ], "sc:license": "GPL-3.0", "sc:name": "AMAS", "sc:operatingSystem": [ - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://github.com/marekborowiec/AMAS" + }, + { + "@id": "https://doi.org/10.7717/peerj.1660", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/amatreader/amatreaderbioschemas.jsonld b/data/amatreader/amatreaderbioschemas.jsonld index 6db969dd146f5..5807249035fd0 100644 --- a/data/amatreader/amatreaderbioschemas.jsonld +++ b/data/amatreader/amatreaderbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Augments the Cytoscape network readers by adding the ability to read in an adjacency matrix.", "sc:name": "aMatReader", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://www.cgl.ucsf.edu/cytoscape/utilities3/amatreader.shtml", "sc:version": "1.1.3" diff --git a/data/amber/amberbioschemas.jsonld b/data/amber/amberbioschemas.jsonld index 8ea4efccabba6..73cf49ee33d19 100644 --- a/data/amber/amberbioschemas.jsonld +++ b/data/amber/amberbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "The Assisted Model Building with Energy Refinement tool refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos.", "sc:name": "AMBER", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://ambermd.org/" diff --git a/data/ambergpumdsimulation/ambergpumdsimulationbioschemas.jsonld b/data/ambergpumdsimulation/ambergpumdsimulationbioschemas.jsonld index 34ebc2859137e..21d2298e374b3 100644 --- a/data/ambergpumdsimulation/ambergpumdsimulationbioschemas.jsonld +++ b/data/ambergpumdsimulation/ambergpumdsimulationbioschemas.jsonld @@ -9,21 +9,17 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1016/j.bpj.2017.04.055", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/ambergpumdsimulation", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Rommie E. Amaro", "sc:additionalType": "Plug-in", "sc:citation": [ + "pmcid:PMC5479118", + "pubmed:28636905", { "@id": "https://doi.org/10.1016/j.bpj.2017.04.055" - }, - "pubmed:28636905", - "pmcid:PMC5479118" + } ], "sc:description": "An automated workflow tool for Kepler to perform AMBER GPU molecular dynamics simulations.", "sc:featureList": { @@ -32,11 +28,15 @@ "sc:license": "LGPL-2.0", "sc:name": "AmberGPUMDSimulation", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://github.com/nbcrrolls/workflows/tree/master/Production/AmberGPUMDSimulation" + }, + { + "@id": "https://doi.org/10.1016/j.bpj.2017.04.055", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/ambertools/ambertoolsbioschemas.jsonld b/data/ambertools/ambertoolsbioschemas.jsonld index ac949e4b1b78e..d17fcdbf733e1 100644 --- a/data/ambertools/ambertoolsbioschemas.jsonld +++ b/data/ambertools/ambertoolsbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Consists of several independently developed packages that work well by themselves, and with Amber (Assisted Model Building with Energy Refinement) itself. The suite can also be used to carry out complete (non-periodic) molecular dynamics simulations (using NAB), with generalized Born solvent models.", "sc:name": "AmberTools", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "http://ambermd.org/#AmberTools" } \ No newline at end of file diff --git a/data/ambit-smirks/ambit-smirksbioschemas.jsonld b/data/ambit-smirks/ambit-smirksbioschemas.jsonld index 8d589d6316589..be8dff15fb0f0 100644 --- a/data/ambit-smirks/ambit-smirksbioschemas.jsonld +++ b/data/ambit-smirks/ambit-smirksbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "Apache-2.0", "sc:name": "Ambit-SMIRKS", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "http://ambit.sourceforge.net/smirks/" } \ No newline at end of file diff --git a/data/amda/amdabioschemas.jsonld b/data/amda/amdabioschemas.jsonld index e4e5d412ee9d4..c580f832ec7c6 100644 --- a/data/amda/amdabioschemas.jsonld +++ b/data/amda/amdabioschemas.jsonld @@ -9,39 +9,39 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.3389/FGENE.2019.00350", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/AMDA", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Xiang Zhan", "sc:additionalType": "Library", "sc:citation": [ - "pmcid:PMC6491633", - "pubmed:31068967", { "@id": "https://doi.org/10.3389/FGENE.2019.00350" - } + }, + "pmcid:PMC6491633", + "pubmed:31068967" ], "sc:description": "Adaptive Multivariate Two-Sample Test With Application to Microbiome Differential Abundance Analysis.", "sc:featureList": [ { - "@id": "edam:operation_3677" + "@id": "edam:operation_3741" }, { - "@id": "edam:operation_3741" + "@id": "edam:operation_3677" } ], "sc:license": "GPL-3.0", "sc:name": "AMDA", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/xyz5074/AMDA" + }, + { + "@id": "https://doi.org/10.3389/FGENE.2019.00350", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/amen/amenbioschemas.jsonld b/data/amen/amenbioschemas.jsonld index 6f4d1ae7ab44a..a01b3ff3c99fa 100644 --- a/data/amen/amenbioschemas.jsonld +++ b/data/amen/amenbioschemas.jsonld @@ -13,10 +13,6 @@ "@id": "https://doi.org/10.1186/1471-2105-9-86", "@type": "sc:CreativeWork" }, - { - "@id": "http://orcid.org/0000-0002-0535-3628", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/amen", "@type": "sc:SoftwareApplication", @@ -26,26 +22,30 @@ "sc:additionalType": "Desktop application", "sc:citation": [ "pmcid:PMC18254954", - "pubmed:18254954", { "@id": "https://doi.org/10.1186/1471-2105-9-86" - } + }, + "pubmed:18254954" ], "sc:description": "The Annotation, Mapping, Expression and Network (AMEN) software is a stand-alone, unified suite of tools that enables biological and medical researchers with basic bioinformatics training to manage and explore genome annotation, chromosomal mapping, protein-protein interaction, expression profiling and proteomics data. The current version provides modules for (i) uploading and pre-processing data from microarray expression profiling experiments, (ii) detecting groups of significantly co-expressed genes, and (iii) searching for enrichment of functional annotations within those groups. Moreover, the user interface is designed to simultaneously visualize several types of data such as protein-protein interaction networks in conjunction with expression profiles and cellular co-localization patterns. We have successfully applied the program to interpret expression profiling data from budding yeast, rodents and human.", "sc:featureList": [ { - "@id": "edam:operation_3083" + "@id": "edam:operation_2495" }, { "@id": "edam:operation_3501" }, { - "@id": "edam:operation_2495" + "@id": "edam:operation_3083" } ], "sc:name": "AMEN", "sc:url": "https://sourceforge.net/projects/amen/", "sc:version": "1.5.4" + }, + { + "@id": "http://orcid.org/0000-0002-0535-3628", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/amica/amicabioschemas.jsonld b/data/amica/amicabioschemas.jsonld index f5276252740f8..df7b9d8214e39 100644 --- a/data/amica/amicabioschemas.jsonld +++ b/data/amica/amicabioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Web application which provides users with a range of microarray gene expression data clustering algorithms. Algorithms can be run concurrently on the same data sets. Data can be visualized by heat maps and downloaded as a standard clustered data file for further analysis.", "sc:name": "AMICa", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://bioalgo.iit.cnr.it/amica" diff --git a/data/amigene/amigenebioschemas.jsonld b/data/amigene/amigenebioschemas.jsonld index dd5f5a9e27bc9..535dab773fc08 100644 --- a/data/amigene/amigenebioschemas.jsonld +++ b/data/amigene/amigenebioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Gene prediction server that can identify coding sequences in microbes.", "sc:name": "AMIGene", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://www.genoscope.cns.fr/agc/tools/amigene/Form/form.php" } \ No newline at end of file diff --git a/data/amigo_2/amigo_2bioschemas.jsonld b/data/amigo_2/amigo_2bioschemas.jsonld index b69fed4647b70..5b21d94f85710 100644 --- a/data/amigo_2/amigo_2bioschemas.jsonld +++ b/data/amigo_2/amigo_2bioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "The GO Consortium GO browser and search engine.", "sc:name": "AmiGO 2", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://amigo.geneontology.org/amigo" } \ No newline at end of file diff --git a/data/ammodels/ammodelsbioschemas.jsonld b/data/ammodels/ammodelsbioschemas.jsonld index e3cb723c95bdf..f81ff7906218f 100644 --- a/data/ammodels/ammodelsbioschemas.jsonld +++ b/data/ammodels/ammodelsbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Tool which helps enable adaptive management by codifying knowledge in the form of models generated from numerous analyses and data sets. Facilitates this process by storing all models and data sets in a single object that can be updated and saved, thus tracking changes in knowledge through time. A shiny application called AM Model Manager (modelMgr()) enables the use of these functions via a GUI.", "sc:name": "AMModels", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "https://cran.r-project.org/web/packages/AMModels/index.html" diff --git a/data/amoebadb/amoebadbbioschemas.jsonld b/data/amoebadb/amoebadbbioschemas.jsonld index fda2a3535ed36..f6e079e68447a 100644 --- a/data/amoebadb/amoebadbbioschemas.jsonld +++ b/data/amoebadb/amoebadbbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "It is a new functional genomic databases serving the amoebozoa research communities. It contains the genomes of three Entamoeba species (E. dispar, E. invadens and E. histolityca) and microarray expression data for E. histolytica. Importantly it utilizes the graphical strategy builder that affords a database user the ability to ask complex multi-data-type questions with relative ease and versatility.", "sc:name": "AmoebaDB", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://AmoebaDB.org" } \ No newline at end of file diff --git a/data/amordad/amordadbioschemas.jsonld b/data/amordad/amordadbioschemas.jsonld index a98e661c7a67c..2fc978d25cb3b 100644 --- a/data/amordad/amordadbioschemas.jsonld +++ b/data/amordad/amordadbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Database engine for comparing metagenomic data at massive scale. It first obtains the sequence signature of metagenomes and organizes them as points in high dimensional space.", "sc:name": "Amordad", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://smithlabresearch.org/software/amordad/" } \ No newline at end of file diff --git a/data/amountain/amountainbioschemas.jsonld b/data/amountain/amountainbioschemas.jsonld index 0be4f8be9a2f4..d03ebada006c8 100644 --- a/data/amountain/amountainbioschemas.jsonld +++ b/data/amountain/amountainbioschemas.jsonld @@ -12,15 +12,15 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Dong Li", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "A pure data-driven gene network, weighted gene co-expression network (WGCN) could be constructed only from expression profile. Different layers in such networks may represent different time points, multiple conditions or various species. This tool aims to search active modules in multi-layer WGCN using a continuous optimization approach.", "sc:license": "GPL-2.0", "sc:name": "AMOUNTAIN", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AMOUNTAIN.html", diff --git a/data/amped/ampedbioschemas.jsonld b/data/amped/ampedbioschemas.jsonld index 4a2fb0ff5fc65..18efd568eacaa 100644 --- a/data/amped/ampedbioschemas.jsonld +++ b/data/amped/ampedbioschemas.jsonld @@ -12,9 +12,9 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Lenore M Martin", "sc:additionalType": [ + "Web service", "Suite", - "Database portal", - "Web service" + "Database portal" ], "sc:description": "Annotated collection of normalized data describing antimicrobial peptides, their sources, their 3D structures, and their target organisms. It enables users to perform quick queries and allows the entire peptide community to contribute to the repository.", "sc:license": "Other", diff --git a/data/amphoranet/amphoranetbioschemas.jsonld b/data/amphoranet/amphoranetbioschemas.jsonld index 9d8f8bc3bef4f..de3ed7c8c1520 100644 --- a/data/amphoranet/amphoranetbioschemas.jsonld +++ b/data/amphoranet/amphoranetbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AmphoraNet", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://pitgroup.org/amphoranet/" } \ No newline at end of file diff --git a/data/amphoravizu/amphoravizubioschemas.jsonld b/data/amphoravizu/amphoravizubioschemas.jsonld index fec5e6af9a87a..8c463a7fe259c 100644 --- a/data/amphoravizu/amphoravizubioschemas.jsonld +++ b/data/amphoravizu/amphoravizubioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AmphoraVizu", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://pitgroup.org/amphoravizu/" } \ No newline at end of file diff --git a/data/amplimap/amplimapbioschemas.jsonld b/data/amplimap/amplimapbioschemas.jsonld index 4cccb7b1e48b4..e3c717d5c4127 100644 --- a/data/amplimap/amplimapbioschemas.jsonld +++ b/data/amplimap/amplimapbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "amplimap", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/koelling/amplimap" } \ No newline at end of file diff --git a/data/amplimethprofiler/amplimethprofilerbioschemas.jsonld b/data/amplimethprofiler/amplimethprofilerbioschemas.jsonld index ec8a1e0a17394..7d2aea72e2e65 100644 --- a/data/amplimethprofiler/amplimethprofilerbioschemas.jsonld +++ b/data/amplimethprofiler/amplimethprofilerbioschemas.jsonld @@ -16,18 +16,18 @@ "sc:additionalType": "Command-line tool", "sc:citation": [ "pmcid:PMC5123276", - "pubmed:27884103", { "@id": "https://doi.org/10.1186/S12859-016-1380-3" - } + }, + "pubmed:27884103" ], "sc:description": "Pipeline for the analysis of CpG methylation profiles of targeted deep bisulfite sequenced amplicons.", "sc:featureList": [ { - "@id": "edam:operation_3204" + "@id": "edam:operation_3186" }, { - "@id": "edam:operation_3186" + "@id": "edam:operation_3204" } ], "sc:license": "GPL-3.0", diff --git a/data/ampliqueso/ampliquesobioschemas.jsonld b/data/ampliqueso/ampliquesobioschemas.jsonld index 35b6359ca7cf7..f446713294a5d 100644 --- a/data/ampliqueso/ampliquesobioschemas.jsonld +++ b/data/ampliqueso/ampliquesobioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Michal Okoniewski", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "The package provides tools and reports for the analysis of amplicon sequencing panels, such as AmpliSeq.", "sc:license": "GPL-2.0", diff --git a/data/ampred/ampredbioschemas.jsonld b/data/ampred/ampredbioschemas.jsonld index d7908635212ae..ac8c6d409d5ea 100644 --- a/data/ampred/ampredbioschemas.jsonld +++ b/data/ampred/ampredbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Ampred server predicts the Antimicrobial activity of given sequence. The activity may be antifungal, antiviral and antibacterial .This server works based on Multidimensional signatures of antimicrobial peptides", "sc:name": "Ampred", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://www.bioinformatics.org/Antimicrobial/" } \ No newline at end of file diff --git a/data/amps-nmr/amps-nmrbioschemas.jsonld b/data/amps-nmr/amps-nmrbioschemas.jsonld index 92c715f64b24f..f291f76f2f7d8 100644 --- a/data/amps-nmr/amps-nmrbioschemas.jsonld +++ b/data/amps-nmr/amps-nmrbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "NMR protein structure refinement. Amber (acronym to Assisted Model Building with Energy Refinement) is a suite of programs 1N3L that allow users to perform molecular dynamics (MD) simulations on biological systems. This web portal makes available the entire functionality of AMBER, in particular (but not only) using NMR-derived information as restraints for MD.", "sc:name": "AMPS-NMR", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:provider": "CERM", diff --git a/data/ams/amsbioschemas.jsonld b/data/ams/amsbioschemas.jsonld index 0f1f5c3041194..471c1a782d369 100644 --- a/data/ams/amsbioschemas.jsonld +++ b/data/ams/amsbioschemas.jsonld @@ -9,27 +9,27 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1007/s00726-012-1290-2", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/ams", "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:citation": [ - "pmcid:PMC3397139", - "pubmed:22555647", { "@id": "https://doi.org/10.1007/s00726-012-1290-2" }, - "pubmed:20423529" + "pmcid:PMC3397139", + "pubmed:20423529", + "pubmed:22555647" ], "sc:description": "Predicts the wide selection of 88 different types of the single amino acid post-translational modifications (PTM) in protein sequences.", "sc:name": "AMS", "sc:operatingSystem": "Linux", "sc:url": "https://code.google.com/p/automotifserver/", "sc:version": "4.0-1.5" + }, + { + "@id": "https://doi.org/10.1007/s00726-012-1290-2", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/amt/amtbioschemas.jsonld b/data/amt/amtbioschemas.jsonld index b2a9e88ca9765..b5312ab5b1ed5 100644 --- a/data/amt/amtbioschemas.jsonld +++ b/data/amt/amtbioschemas.jsonld @@ -9,14 +9,18 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1002/ece3.4823", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/amt", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Johannes Signer", "sc:additionalType": "Library", "sc:citation": [ - "pubmed:30766677", "pmcid:PMC6362447", + "pubmed:30766677", { "@id": "https://doi.org/10.1002/ece3.4823" } @@ -29,15 +33,11 @@ "sc:name": "amt", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://cran.r-project.org/package=amt", "sc:version": "0.0.6" - }, - { - "@id": "https://doi.org/10.1002/ece3.4823", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/amtdb/amtdbbioschemas.jsonld b/data/amtdb/amtdbbioschemas.jsonld index 1ebdc9f24b861..23bb023879172 100644 --- a/data/amtdb/amtdbbioschemas.jsonld +++ b/data/amtdb/amtdbbioschemas.jsonld @@ -9,19 +9,15 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://orcid.org/0000-0003-1774-0091", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/AmtDB", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ { - "@id": "https://orcid.org/0000-0003-1774-0091" + "@id": "https://orcid.org/0000-0003-3059-6127" }, { - "@id": "https://orcid.org/0000-0003-3059-6127" + "@id": "https://orcid.org/0000-0003-1774-0091" } ], "edam:has_input": { @@ -38,11 +34,11 @@ "@id": "https://orcid.org/0000-0003-1338-638X" }, "sc:citation": [ + "pmcid:PMC6324066", + "pubmed:30247677", { "@id": "https://doi.org/10.1093/nar/gky843" - }, - "pmcid:PMC6324066", - "pubmed:30247677" + } ], "sc:description": "This is the place where you can find an updated list of the published mitochondrial sequences coming from the ancient DNA samples (aDNA). The main interest of our database lies in the anatomically modern Homo sapiens samples, ranging from the late Paleolithic to roughly Iron Age times, focusing on an Euroasian geographical area. We provide both the mtDNA sequences (in FASTA format), and the metadata for the samples (IDs, dates, geolocation, site, culture, mtDNA haplogroup etc., available to download in a tab-delimited text file).", "sc:featureList": { @@ -59,12 +55,16 @@ "sc:url": "https://amtdb.org", "sc:version": "v1.002" }, + { + "@id": "https://orcid.org/0000-0003-3059-6127", + "@type": "schema:Person" + }, { "@id": "https://orcid.org/0000-0003-1338-638X", "@type": "schema:Person" }, { - "@id": "https://orcid.org/0000-0003-3059-6127", + "@id": "https://orcid.org/0000-0003-1774-0091", "@type": "schema:Person" }, { diff --git a/data/amtrak/amtrakbioschemas.jsonld b/data/amtrak/amtrakbioschemas.jsonld index 0dc9b5bc5fae2..f1d9d03dbb121 100644 --- a/data/amtrak/amtrakbioschemas.jsonld +++ b/data/amtrak/amtrakbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1371/journal.pone.0167620", + "@type": "sc:CreativeWork" + }, { "@id": "http://orcid.org/0000-0002-9506-2153", "@type": "schema:Person" @@ -21,10 +25,10 @@ }, "sc:additionalType": "Desktop application", "sc:citation": [ + "pubmed:27992448", { "@id": "https://doi.org/10.1371/journal.pone.0167620" }, - "pubmed:27992448", "pmcid:PMC5167257" ], "sc:description": "Automated multi-peak tracking kymography (AMTraK) is a software tool that uses peak information and distance minimization to track and automatically quantify kymographs.", @@ -34,14 +38,10 @@ "sc:license": "GPL-3.0", "sc:name": "AMTraK", "sc:operatingSystem": [ - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://www.iiserpune.ac.in/~cathale/SupplementaryMaterial/Amtrak.html" - }, - { - "@id": "https://doi.org/10.1371/journal.pone.0167620", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/amylpred/amylpredbioschemas.jsonld b/data/amylpred/amylpredbioschemas.jsonld index c4fe78412c9e2..2cd0beceb10f1 100644 --- a/data/amylpred/amylpredbioschemas.jsonld +++ b/data/amylpred/amylpredbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Consensus prediction method for identifying possible amyloidogenic regions in protein sequences.", "sc:name": "AMYLPRED", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://aias.biol.uoa.gr/AMYLPRED/" } \ No newline at end of file diff --git a/data/amylpred2/amylpred2bioschemas.jsonld b/data/amylpred2/amylpred2bioschemas.jsonld index f52b9a4f5778d..5800267fa38af 100644 --- a/data/amylpred2/amylpred2bioschemas.jsonld +++ b/data/amylpred2/amylpred2bioschemas.jsonld @@ -15,10 +15,10 @@ "sc:additionalType": "Web application", "sc:citation": [ "pubmed:23326595", - "pmcid:PMC3542318", { "@id": "https://doi.org/10.1371/journal.pone.0054175" - } + }, + "pmcid:PMC3542318" ], "sc:contributor": { "@id": "https://orcid.org/0000-0001-7446-4412" @@ -29,9 +29,9 @@ }, "sc:name": "AMYL-PRED 2", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "http://aias.biol.uoa.gr/AMYLPRED2/" }, diff --git a/data/amypdb/amypdbbioschemas.jsonld b/data/amypdb/amypdbbioschemas.jsonld index 88a3f1fe3befa..301cecaab317a 100644 --- a/data/amypdb/amypdbbioschemas.jsonld +++ b/data/amypdb/amypdbbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "An online database dedicated to amyloid precursor families and to their amino acid sequence signatures.", "sc:name": "AMYPdb", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://amypdb.genouest.org" } \ No newline at end of file diff --git a/data/anaconda_cnv/anaconda_cnvbioschemas.jsonld b/data/anaconda_cnv/anaconda_cnvbioschemas.jsonld index 6d319ce9b6221..6a9fcc72ec510 100644 --- a/data/anaconda_cnv/anaconda_cnvbioschemas.jsonld +++ b/data/anaconda_cnv/anaconda_cnvbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/anaconda_cnv", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Yuanwei Zhang", - "Xiaohua Jiang" + "Xiaohua Jiang", + "Yuanwei Zhang" ], "sc:additionalType": "Command-line tool", "sc:description": "An automated pipeline for somatic copy number variation detection and annotation from tumor exome sequencing data.", diff --git a/data/analysispageserver/analysispageserverbioschemas.jsonld b/data/analysispageserver/analysispageserverbioschemas.jsonld index 6942ac417ba4a..238038fbf5ad6 100644 --- a/data/analysispageserver/analysispageserverbioschemas.jsonld +++ b/data/analysispageserver/analysispageserverbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Brad Friedman", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "Modular system that enables sharing of customizable R analyses via the web.", "sc:license": "Artistic-2.0", "sc:name": "AnalysisPageServer", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AnalysisPageServer.html", "sc:version": "1.8.1" diff --git a/data/analyzer/analyzerbioschemas.jsonld b/data/analyzer/analyzerbioschemas.jsonld index 9cca82b0c2ffe..098fa892217bf 100644 --- a/data/analyzer/analyzerbioschemas.jsonld +++ b/data/analyzer/analyzerbioschemas.jsonld @@ -15,22 +15,22 @@ "biotools:primaryContact": "Dr M.D. Fricker", "sc:additionalType": "Desktop application", "sc:citation": [ - "pmcid:PMC6395764", "pubmed:30816109", { "@id": "https://doi.org/10.1038/s41467-019-08893-9" - } + }, + "pmcid:PMC6395764" ], "sc:description": "Software package for quantitative analysis of plant ER architecture and dynamics.", "sc:featureList": [ { - "@id": "edam:operation_3799" + "@id": "edam:operation_3216" }, { - "@id": "edam:operation_3435" + "@id": "edam:operation_3799" }, { - "@id": "edam:operation_3216" + "@id": "edam:operation_3435" } ], "sc:name": "AnalyzER", diff --git a/data/anamir/anamirbioschemas.jsonld b/data/anamir/anamirbioschemas.jsonld index c72419f846b00..6305fdcea57e1 100644 --- a/data/anamir/anamirbioschemas.jsonld +++ b/data/anamir/anamirbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Ti-Tai Wang", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "This package is intended to identify potential interactions of miRNA-target gene interactions from miRNA and mRNA expression data. It contains functions for statistical test, databases of miRNA-target gene interaction and functional analysis.", "sc:license": "GPL-2.0", "sc:name": "anamiR", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/anamiR.html", "sc:version": "1.0.1" diff --git a/data/ananke/anankebioschemas.jsonld b/data/ananke/anankebioschemas.jsonld index b192bbcf10862..0ee3d31a2c1d4 100644 --- a/data/ananke/anankebioschemas.jsonld +++ b/data/ananke/anankebioschemas.jsonld @@ -9,21 +9,17 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.7717/peerj.3812", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/ananke", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Michael W. Hall", "sc:additionalType": "Command-line tool", "sc:citation": [ + "pmcid:PMC5621509", + "pubmed:28966891", { "@id": "https://doi.org/10.7717/peerj.3812" - }, - "pmcid:PMC5621509", - "pubmed:28966891" + } ], "sc:description": "Clustering marker gene data by time-series patterns.", "sc:featureList": { @@ -36,6 +32,10 @@ "Linux" ], "sc:url": "https://github.com/beiko-lab/ananke" + }, + { + "@id": "https://doi.org/10.7717/peerj.3812", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/anaquin/anaquinbioschemas.jsonld b/data/anaquin/anaquinbioschemas.jsonld index 5ace55b63ac0d..5213a235f295e 100644 --- a/data/anaquin/anaquinbioschemas.jsonld +++ b/data/anaquin/anaquinbioschemas.jsonld @@ -9,13 +9,17 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0002-2748-5496", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/anaquin", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Ted Wong", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:citation": "pubmed:27502218", "sc:contributor": { @@ -25,16 +29,12 @@ "sc:license": "BSD-4-Clause", "sc:name": "Anaquin", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/Anaquin.html", "sc:version": "1.0.0" - }, - { - "@id": "http://orcid.org/0000-0002-2748-5496", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/anarci/anarcibioschemas.jsonld b/data/anarci/anarcibioschemas.jsonld index 64810c8ad9f0c..c0c7b44d89cb2 100644 --- a/data/anarci/anarcibioschemas.jsonld +++ b/data/anarci/anarcibioschemas.jsonld @@ -11,15 +11,15 @@ "@id": "https://bio.tools/anarci", "@type": "sc:SoftwareApplication", "sc:additionalType": [ - "Desktop application", - "Web application" + "Web application", + "Desktop application" ], "sc:citation": "pubmed:26424857", "sc:description": "Tool for numbering amino-acid sequences of antibody and T-cell receptor variable domains.", "sc:name": "ANARCI", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "http://opig.stats.ox.ac.uk/webapps/sabdab-sabpred/ANARCI.php" diff --git a/data/anastasia/anastasiabioschemas.jsonld b/data/anastasia/anastasiabioschemas.jsonld index 6df574713d8a5..8e6ecd25561aa 100644 --- a/data/anastasia/anastasiabioschemas.jsonld +++ b/data/anastasia/anastasiabioschemas.jsonld @@ -11,9 +11,9 @@ "@id": "https://bio.tools/anastasia", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ + "Eleftherios Pilalis", "Aristotelis Chatziioannou", - "Theodoros Koutsandreas", - "Eleftherios Pilalis" + "Theodoros Koutsandreas" ], "sc:additionalType": [ "Web application", @@ -22,9 +22,9 @@ "sc:description": "ANASTASIA (Automated Nucleotide Animoacid Sequences Translational plAtform for Synthetic Interpretation and Analysis) is a metagenomics analysis platform and repository.", "sc:name": "ANASTASIA", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "http://motherbox.chemeng.ntua.gr/anastasia_dev/" } \ No newline at end of file diff --git a/data/anca/ancabioschemas.jsonld b/data/anca/ancabioschemas.jsonld index db7aa5d0c5cf7..dc4fed1dfa345 100644 --- a/data/anca/ancabioschemas.jsonld +++ b/data/anca/ancabioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1016/j.bpj.2018.03.021", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/anca", "@type": "sc:SoftwareApplication", @@ -28,15 +32,11 @@ "sc:license": "BSD-3-Clause", "sc:name": "ANCA", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://csb.pitt.edu/anca/index.html", "sc:version": "1.0" - }, - { - "@id": "https://doi.org/10.1016/j.bpj.2018.03.021", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/anceshc/anceshcbioschemas.jsonld b/data/anceshc/anceshcbioschemas.jsonld index b7c14146aa92b..23577178676c8 100644 --- a/data/anceshc/anceshcbioschemas.jsonld +++ b/data/anceshc/anceshcbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "AncesHC (ancestral haplotype clustering ) is a program for determining the haplotype structure of a population sample from genotype data, and then testing for association of these haplotypes with either a binary or continous outcome.", "sc:name": "AncesHC", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://www.imperial.ac.uk/people/l.coin", "sc:version": "2009" diff --git a/data/anchor_expedition_suite/anchor_expedition_suitebioschemas.jsonld b/data/anchor_expedition_suite/anchor_expedition_suitebioschemas.jsonld index 9c389583b2974..8488291732aff 100644 --- a/data/anchor_expedition_suite/anchor_expedition_suitebioschemas.jsonld +++ b/data/anchor_expedition_suite/anchor_expedition_suitebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "anchor (Expedition suite)", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/YeoLab/anchor" } \ No newline at end of file diff --git a/data/anchor_tfbs_prediction/anchor_tfbs_predictionbioschemas.jsonld b/data/anchor_tfbs_prediction/anchor_tfbs_predictionbioschemas.jsonld index a2734748a2a42..62cc1a1727f40 100644 --- a/data/anchor_tfbs_prediction/anchor_tfbs_predictionbioschemas.jsonld +++ b/data/anchor_tfbs_prediction/anchor_tfbs_predictionbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Package for trans-cell type prediction of transcription factor binding sites.", "sc:name": "Anchor", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/GuanLab/Anchor" } \ No newline at end of file diff --git a/data/anchored_multiplier_calculator/anchored_multiplier_calculatorbioschemas.jsonld b/data/anchored_multiplier_calculator/anchored_multiplier_calculatorbioschemas.jsonld index 6b7ef1b4b175c..a965186a32ac2 100644 --- a/data/anchored_multiplier_calculator/anchored_multiplier_calculatorbioschemas.jsonld +++ b/data/anchored_multiplier_calculator/anchored_multiplier_calculatorbioschemas.jsonld @@ -18,8 +18,8 @@ "sc:name": "Anchored Multiplier Calculator", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://anchoredmultiplier.ucsf.edu/" } \ No newline at end of file diff --git a/data/ancis-pytorch/ancis-pytorchbioschemas.jsonld b/data/ancis-pytorch/ancis-pytorchbioschemas.jsonld index 8253660779d66..dd31b6a436c39 100644 --- a/data/ancis-pytorch/ancis-pytorchbioschemas.jsonld +++ b/data/ancis-pytorch/ancis-pytorchbioschemas.jsonld @@ -11,12 +11,12 @@ "@id": "https://bio.tools/ANCIS-Pytorch", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ + "Daniel J. Hoeppner", "Menglin Jiang", "Pengxiang Wu", - "Daniel J. Hoeppner", - "Qiaoying Huang", "Dimitris N. Metaxas", - "Jingru Yi" + "Jingru Yi", + "Qiaoying Huang" ], "sc:additionalType": "Script", "sc:citation": "pubmed:31103790", diff --git a/data/ancorr/ancorrbioschemas.jsonld b/data/ancorr/ancorrbioschemas.jsonld index 826db8898b59f..dc5920f1e6226 100644 --- a/data/ancorr/ancorrbioschemas.jsonld +++ b/data/ancorr/ancorrbioschemas.jsonld @@ -11,9 +11,9 @@ "@id": "https://bio.tools/ancorr", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ + "Youri Kravatsky", "Vladimir Chechetkin", - "Galina Kravatskaya", - "Youri Kravatsky" + "Galina Kravatskaya" ], "sc:additionalType": "Web service", "sc:citation": "pubmed:25627242", diff --git a/data/andi/andibioschemas.jsonld b/data/andi/andibioschemas.jsonld index 3bef7d5619b8c..81ab6ad1f4c1d 100644 --- a/data/andi/andibioschemas.jsonld +++ b/data/andi/andibioschemas.jsonld @@ -22,8 +22,8 @@ "sc:name": "andi", "sc:operatingSystem": "Linux", "sc:provider": [ - "evolbio.mpg.de", - "Max Planck Institute for Evolutionary Biology" + "Max Planck Institute for Evolutionary Biology", + "evolbio.mpg.de" ], "sc:url": "https://github.com/EvolBioInf/andi", "sc:version": "0.11" diff --git a/data/andis/andisbioschemas.jsonld b/data/andis/andisbioschemas.jsonld index f72ccd3a8fdf4..81478cb679272 100644 --- a/data/andis/andisbioschemas.jsonld +++ b/data/andis/andisbioschemas.jsonld @@ -9,41 +9,41 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/s12859-019-2898-y", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/ANDIS", "@type": "sc:SoftwareApplication", "sc:additionalType": "Desktop application", "sc:citation": [ - "pubmed:31159742", { "@id": "https://doi.org/10.1186/s12859-019-2898-y" }, - "pmcid:PMC6547486" + "pmcid:PMC6547486", + "pubmed:31159742" ], "sc:description": "Atomic angle- and distance-dependent statistical potential for protein structure quality assessment.", "sc:featureList": [ { - "@id": "edam:operation_0249" + "@id": "edam:operation_0321" }, { "@id": "edam:operation_0476" }, { - "@id": "edam:operation_0321" + "@id": "edam:operation_0249" } ], "sc:license": "Unlicense", "sc:name": "ANDIS", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "http://qbp.hzau.edu.cn/ANDIS/" + }, + { + "@id": "https://doi.org/10.1186/s12859-019-2898-y", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/andom/andombioschemas.jsonld b/data/andom/andombioschemas.jsonld index dcd7c472b91a6..b0ee082fd6a75 100644 --- a/data/andom/andombioschemas.jsonld +++ b/data/andom/andombioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Web tool that helps to assign structural domains to protein sequences and to classify them according to SCOP.", "sc:name": "AnDom", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://andom.bioapps.biozentrum.uni-wuerzburg.de/index_new.html" diff --git a/data/aneufinder/aneufinderbioschemas.jsonld b/data/aneufinder/aneufinderbioschemas.jsonld index 0511345ffa853..3ade8cbab47b3 100644 --- a/data/aneufinder/aneufinderbioschemas.jsonld +++ b/data/aneufinder/aneufinderbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0003-0989-3127", - "@type": "schema:Person" - }, { "@id": "https://doi.org/10.1186/s13059-016-0971-7", "@type": "sc:CreativeWork" @@ -21,21 +17,21 @@ "@id": "https://bio.tools/aneufinder", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Aaron Taudt", { "@id": "http://orcid.org/0000-0003-0989-3127" - } + }, + "Aaron Taudt" ], "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:citation": [ - "pubmed:27246460", - "pmcid:PMC4888588", { "@id": "https://doi.org/10.1186/s13059-016-0971-7" - } + }, + "pmcid:PMC4888588", + "pubmed:27246460" ], "sc:description": "This package implements functions for CNV calling, plotting, export and analysis from whole-genome single cell sequencing data.", "sc:featureList": { @@ -50,6 +46,10 @@ ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AneuFinder.html", "sc:version": "1.2.1" + }, + { + "@id": "http://orcid.org/0000-0003-0989-3127", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/aneuvis/aneuvisbioschemas.jsonld b/data/aneuvis/aneuvisbioschemas.jsonld index 5610af7d6fc45..122bcb82bcd90 100644 --- a/data/aneuvis/aneuvisbioschemas.jsonld +++ b/data/aneuvis/aneuvisbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1186/s12859-019-2842-1", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/Aneuvis", "@type": "sc:SoftwareApplication", @@ -18,8 +22,8 @@ { "@id": "https://doi.org/10.1186/s12859-019-2842-1" }, - "pmcid:PMC6580570", - "pubmed:31208319" + "pubmed:31208319", + "pmcid:PMC6580570" ], "sc:description": "Web-based exploration of numerical chromosomal variation in single cells.", "sc:featureList": [ @@ -41,10 +45,6 @@ "Linux" ], "sc:url": "https://dpique.shinyapps.io/aneuvis/" - }, - { - "@id": "https://doi.org/10.1186/s12859-019-2842-1", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/anf/anfbioschemas.jsonld b/data/anf/anfbioschemas.jsonld index 38db3f7277775..1c86b45a3fbc3 100644 --- a/data/anf/anfbioschemas.jsonld +++ b/data/anf/anfbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "GPL-3.0", "sc:name": "ANF", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ANF.html", "sc:version": "1.2.0" diff --git a/data/anglerfish/anglerfishbioschemas.jsonld b/data/anglerfish/anglerfishbioschemas.jsonld index 8243d53e1ab6a..10788d132c558 100644 --- a/data/anglerfish/anglerfishbioschemas.jsonld +++ b/data/anglerfish/anglerfishbioschemas.jsonld @@ -9,6 +9,14 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0001-9649-5092", + "@type": "schema:Person" + }, + { + "@id": "https://doi.org/10.1093/BIOINFORMATICS/BTW781", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/anglerfish", "@type": "sc:SoftwareApplication", @@ -17,11 +25,11 @@ }, "sc:additionalType": "Web application", "sc:citation": [ + "pmcid:PMC5860525", "pubmed:28035031", { "@id": "https://doi.org/10.1093/BIOINFORMATICS/BTW781" - }, - "pmcid:PMC5860525" + } ], "sc:description": "Method of determining the orientation of an α-helix relative to a defined axis in a rotationally symmetric protein structure such as a membrane protein channel.", "sc:featureList": [ @@ -34,19 +42,11 @@ ], "sc:name": "AnglerFish", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://anglerfish.cryst.bbk.ac.uk/" - }, - { - "@id": "http://orcid.org/0000-0001-9649-5092", - "@type": "schema:Person" - }, - { - "@id": "https://doi.org/10.1093/BIOINFORMATICS/BTW781", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/angsd-wrapper/angsd-wrapperbioschemas.jsonld b/data/angsd-wrapper/angsd-wrapperbioschemas.jsonld index 2a563df5ae442..0f01c612ca82e 100644 --- a/data/angsd-wrapper/angsd-wrapperbioschemas.jsonld +++ b/data/angsd-wrapper/angsd-wrapperbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "ANGSD-wrapper is a utility developed to aid in the analysis of next generation sequencing data.", "sc:name": "angsd-wrapper", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://github.com/mojaveazure/angsd-wrapper" } \ No newline at end of file diff --git a/data/angsd/angsdbioschemas.jsonld b/data/angsd/angsdbioschemas.jsonld index bfee740f17270..738d3683939d1 100644 --- a/data/angsd/angsdbioschemas.jsonld +++ b/data/angsd/angsdbioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "GPL-2.0", "sc:name": "ANGSD", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:provider": "binf.ku.dk", diff --git a/data/angular-ripleys-k/angular-ripleys-kbioschemas.jsonld b/data/angular-ripleys-k/angular-ripleys-kbioschemas.jsonld index 4563ccee08486..d795cb3fbda0f 100644 --- a/data/angular-ripleys-k/angular-ripleys-kbioschemas.jsonld +++ b/data/angular-ripleys-k/angular-ripleys-kbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Quantification of fibrous spatial point patterns from single-molecule localization microscopy data.", "sc:name": "Angular-Ripleys-K", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "https://github.com/RubyPeters/Angular-Ripleys-K" } \ No newline at end of file diff --git a/data/animalnexus/animalnexusbioschemas.jsonld b/data/animalnexus/animalnexusbioschemas.jsonld index 769d150a0f120..9d62099600594 100644 --- a/data/animalnexus/animalnexusbioschemas.jsonld +++ b/data/animalnexus/animalnexusbioschemas.jsonld @@ -27,17 +27,17 @@ "sc:description": "Transforming and visualizing animal movement data from static stations.", "sc:featureList": [ { - "@id": "edam:operation_0337" + "@id": "edam:operation_0335" }, { - "@id": "edam:operation_0335" + "@id": "edam:operation_0337" } ], "sc:name": "animalnexus", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://animalnexus.ca/" }, diff --git a/data/aniseed/aniseedbioschemas.jsonld b/data/aniseed/aniseedbioschemas.jsonld index 94d724f19b4dd..55bdb5e485d56 100644 --- a/data/aniseed/aniseedbioschemas.jsonld +++ b/data/aniseed/aniseedbioschemas.jsonld @@ -10,11 +10,11 @@ }, "@graph": [ { - "@id": "https://orcid.org/0000-0003-4925-2009", + "@id": "https://orcid.org/0000-0001-7247-6460", "@type": "schema:Person" }, { - "@id": "https://orcid.org/0000-0001-7247-6460", + "@id": "https://orcid.org/0000-0003-4925-2009", "@type": "schema:Person" }, { @@ -22,16 +22,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ { - "@id": "https://orcid.org/0000-0001-7247-6460" + "@id": "https://orcid.org/0000-0003-4925-2009" }, { - "@id": "https://orcid.org/0000-0003-4925-2009" + "@id": "https://orcid.org/0000-0001-7247-6460" } ], "sc:additionalType": [ - "Ontology", "Database portal", "Web application", + "Ontology", "Web API" ], "sc:description": "ANISEED is the main model organism database for the worldwide community of scientists working on tunicates (sister-group of vertebrates). It integrates for each species: \ni) a main knowledge base with extended functional, gene expression, phenotyping, anatomical and phylogenetic information; \nii) A multispecies genomic browser; \niii) a Genomicus gene synteny browser.", diff --git a/data/anm/anmbioschemas.jsonld b/data/anm/anmbioschemas.jsonld index 76064b617d530..bce5f4763cd85 100644 --- a/data/anm/anmbioschemas.jsonld +++ b/data/anm/anmbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Simple NMA tool for analysis of vibrational motions in molecular systems. It uses Elastic Network (EN) methodology and represents the system in the residue level.", "sc:name": "ANM", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://anm.csb.pitt.edu/" } \ No newline at end of file diff --git a/data/ann-glycolysis-flux-prediction/ann-glycolysis-flux-predictionbioschemas.jsonld b/data/ann-glycolysis-flux-prediction/ann-glycolysis-flux-predictionbioschemas.jsonld index 28b0058e9e85b..98666a1714b01 100644 --- a/data/ann-glycolysis-flux-prediction/ann-glycolysis-flux-predictionbioschemas.jsonld +++ b/data/ann-glycolysis-flux-prediction/ann-glycolysis-flux-predictionbioschemas.jsonld @@ -13,10 +13,6 @@ "@id": "https://orcid.org/0000-0002-3568-9595", "@type": "schema:Person" }, - { - "@id": "https://doi.org/10.1371/JOURNAL.PONE.0216178", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/ANN-Glycolysis-Flux-Prediction", "@type": "sc:SoftwareApplication", @@ -25,19 +21,19 @@ }, "sc:additionalType": "Script", "sc:citation": [ - "pubmed:31067238", + "pmcid:PMC6505829", { "@id": "https://doi.org/10.1371/JOURNAL.PONE.0216178" }, - "pmcid:PMC6505829" + "pubmed:31067238" ], "sc:description": "Flux prediction using artificial neural network (ANN) for the upper part of glycolysis.", "sc:featureList": [ { - "@id": "edam:operation_3439" + "@id": "edam:operation_3715" }, { - "@id": "edam:operation_3715" + "@id": "edam:operation_3439" }, { "@id": "edam:operation_3435" @@ -46,11 +42,15 @@ "sc:license": "MIT", "sc:name": "ANN-Glycolysis-Flux-Prediction", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "https://github.com/DSIMB/ANN-Glycolysis-Flux-Prediction" + }, + { + "@id": "https://doi.org/10.1371/JOURNAL.PONE.0216178", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/ann-solo/ann-solobioschemas.jsonld b/data/ann-solo/ann-solobioschemas.jsonld index c98c9e6f2b0f8..94173569ac0ea 100644 --- a/data/ann-solo/ann-solobioschemas.jsonld +++ b/data/ann-solo/ann-solobioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "Apache-2.0", "sc:name": "ANN-SoLo", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/bittremieux/ANN-SoLo" } \ No newline at end of file diff --git a/data/annaffy/annaffybioschemas.jsonld b/data/annaffy/annaffybioschemas.jsonld index 53a201b3a3c69..dac58114a6885 100644 --- a/data/annaffy/annaffybioschemas.jsonld +++ b/data/annaffy/annaffybioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Colin A. Smith", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "Functions for handling data from BioConductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.", "sc:license": "GPL-3.0", diff --git a/data/anncolvar/anncolvarbioschemas.jsonld b/data/anncolvar/anncolvarbioschemas.jsonld index 5b77fb6d136bf..d0fa666de5a42 100644 --- a/data/anncolvar/anncolvarbioschemas.jsonld +++ b/data/anncolvar/anncolvarbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.3389/fmolb.2019.00025", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/Anncolvar", "@type": "sc:SoftwareApplication", @@ -24,11 +28,11 @@ "@id": "edam:topic_3892" }, "sc:citation": [ - "pmcid:PMC6482212", - "pubmed:31058167", { "@id": "https://doi.org/10.3389/fmolb.2019.00025" - } + }, + "pmcid:PMC6482212", + "pubmed:31058167" ], "sc:description": "Anncolvar builds a feed-forward neural network for approximation of a collective variable of a molecular system. Molecular simulations are slow due to fact that a studied system tends to stay in local energy minima. Methods such as metadynamics address this problem by application of artificial forces acting on collective variables. Collective variables are some descriptors of the state of the molecular system. For example, when simulation binding of a ligand to protein it is possible to use their distance as a collective variable and by applying force onto this collective variable you can accelerate binding and unbinding. However, some sophisticated collective variables are difficult to calculate. For this purpose we developed Anncolvar to approximate such collective variables using artificial neural network.", "sc:featureList": { @@ -40,24 +44,20 @@ "sc:operatingSystem": "Linux", "sc:softwareHelp": [ { - "@id": "https://github.com/spiwokv/anncolvar/blob/master/README.rst" + "@id": "https://github.com/spiwokv/anncolvar/tree/master/docs/html" }, { - "@id": "https://github.com/spiwokv/anncolvar/tree/master/docs/html" + "@id": "https://github.com/spiwokv/anncolvar/blob/master/README.rst" } ], "sc:url": "https://github.com/spiwokv/anncolvar", "sc:version": [ - "v0.2", "v0.4", + "v0.2", "v0.3", "v0.6", "v0.5" ] - }, - { - "@id": "https://doi.org/10.3389/fmolb.2019.00025", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/annmap/annmapbioschemas.jsonld b/data/annmap/annmapbioschemas.jsonld index 09c690aaa1229..7bc2077385513 100644 --- a/data/annmap/annmapbioschemas.jsonld +++ b/data/annmap/annmapbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Chris Wirth", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "Provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl.", "sc:license": "GPL-2.0", "sc:name": "annmap", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/annmap.html", "sc:version": "1.16.0" diff --git a/data/anno-j/anno-jbioschemas.jsonld b/data/anno-j/anno-jbioschemas.jsonld index 95611db2cdeb6..461e873e74d8a 100644 --- a/data/anno-j/anno-jbioschemas.jsonld +++ b/data/anno-j/anno-jbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "Anno-J", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://dandelion.liveholonics.com/dart/annoj.php" } \ No newline at end of file diff --git a/data/annocript/annocriptbioschemas.jsonld b/data/annocript/annocriptbioschemas.jsonld index 268f5db809716..658f750800cb1 100644 --- a/data/annocript/annocriptbioschemas.jsonld +++ b/data/annocript/annocriptbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission", "sc:name": "Annocript", "sc:operatingSystem": [ - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://github.com/frankMusacchia/Annocript" } \ No newline at end of file diff --git a/data/annokey/annokeybioschemas.jsonld b/data/annokey/annokeybioschemas.jsonld index 323dc862dadb6..d04a730d594f2 100644 --- a/data/annokey/annokeybioschemas.jsonld +++ b/data/annokey/annokeybioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Annokey is a command line tool for annotating gene lists with the results of a key-term search of the NCBI Gene database and linked PubMed article abstracts. Its purpose is to help users prioritise genes by relevance to a domain of interest, such as “breast cancer” or “DNA repair” etcetera. The user steers the search by specifying a ranked list of keywords and terms that are likely to be highly correlated with their domain of interest.", "sc:name": "Annokey", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bjpop.github.io/annokey/" } \ No newline at end of file diff --git a/data/annolnc/annolncbioschemas.jsonld b/data/annolnc/annolncbioschemas.jsonld index 133708f2e7f66..67ff17a7c974e 100644 --- a/data/annolnc/annolncbioschemas.jsonld +++ b/data/annolnc/annolncbioschemas.jsonld @@ -9,21 +9,17 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/s12864-016-3287-9", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/annolnc", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Support", "sc:additionalType": "Web application", "sc:citation": [ - "pmcid:PMC5112684", - "pubmed:27852242", { "@id": "https://doi.org/10.1186/s12864-016-3287-9" - } + }, + "pmcid:PMC5112684", + "pubmed:27852242" ], "sc:description": "A web server for systematically annotating novel human lncRNAs.", "sc:featureList": { @@ -31,11 +27,15 @@ }, "sc:name": "AnnoLnc", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://annolnc.cbi.pku.edu.cn/index.jsp" + }, + { + "@id": "https://doi.org/10.1186/s12864-016-3287-9", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/annotate/annotatebioschemas.jsonld b/data/annotate/annotatebioschemas.jsonld index 00013af1f2b6d..72d051ed3b6b6 100644 --- a/data/annotate/annotatebioschemas.jsonld +++ b/data/annotate/annotatebioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "Artistic-2.0", "sc:name": "annotate", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/annotate.html", diff --git a/data/annotategenes/annotategenesbioschemas.jsonld b/data/annotategenes/annotategenesbioschemas.jsonld index 2040bc46fd98b..7b6b2602efcef 100644 --- a/data/annotategenes/annotategenesbioschemas.jsonld +++ b/data/annotategenes/annotategenesbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "This tool annotates peaks with genomic feature (promoter, enhancer, exon, intron, etc.) and creates a .png file with distribution.", "sc:name": "annotategenes", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/fmareuil/annotategenes/annotateGenes/1.0", "sc:version": "1.0" diff --git a/data/annotategenomicregions/annotategenomicregionsbioschemas.jsonld b/data/annotategenomicregions/annotategenomicregionsbioschemas.jsonld index aee9e0649fb56..d4124772bc1a1 100644 --- a/data/annotategenomicregions/annotategenomicregionsbioschemas.jsonld +++ b/data/annotategenomicregions/annotategenomicregionsbioschemas.jsonld @@ -15,11 +15,11 @@ "biotools:primaryContact": "Contact form", "sc:additionalType": "Web application", "sc:citation": [ - "pubmed:24564446", - "pmcid:PMC4015944", { "@id": "https://doi.org/10.1186/1471-2105-15-S1-S8" - } + }, + "pubmed:24564446", + "pmcid:PMC4015944" ], "sc:description": "Web application that accepts genomic regions as input and outputs a selection of overlapping and/or neighboring genome annotations.", "sc:featureList": { diff --git a/data/annotatepeaks/annotatepeaksbioschemas.jsonld b/data/annotatepeaks/annotatepeaksbioschemas.jsonld index 883511930f72a..827b17af69e40 100644 --- a/data/annotatepeaks/annotatepeaksbioschemas.jsonld +++ b/data/annotatepeaks/annotatepeaksbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "This tool annotates peaks with genomic feature (promoter, enhancer, exon, intron, etc.) and creates a .png file with distribution.", "sc:name": "annotatepeaks", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/fmareuil/annotatepeaks/annotatePeaks/1.0", "sc:version": "1.0" diff --git a/data/annotationdbi/annotationdbibioschemas.jsonld b/data/annotationdbi/annotationdbibioschemas.jsonld index 107a3ffc6d3d9..09e0cbbe3ba57 100644 --- a/data/annotationdbi/annotationdbibioschemas.jsonld +++ b/data/annotationdbi/annotationdbibioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "Artistic-2.0", "sc:name": "AnnotationDbi", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AnnotationDbi.html", "sc:version": "1.36.0" diff --git a/data/annotationfilter/annotationfilterbioschemas.jsonld b/data/annotationfilter/annotationfilterbioschemas.jsonld index 45568056d68d2..a342d568513ce 100644 --- a/data/annotationfilter/annotationfilterbioschemas.jsonld +++ b/data/annotationfilter/annotationfilterbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "Artistic-2.0", "sc:name": "AnnotationFilter", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AnnotationFilter.html", "sc:version": "1.4.0" diff --git a/data/annotationforge/annotationforgebioschemas.jsonld b/data/annotationforge/annotationforgebioschemas.jsonld index e6546ed42d64d..bd1e89cc62650 100644 --- a/data/annotationforge/annotationforgebioschemas.jsonld +++ b/data/annotationforge/annotationforgebioschemas.jsonld @@ -12,15 +12,15 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "BioConductor Package Maintainer", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.", "sc:license": "Artistic-2.0", "sc:name": "AnnotationForge", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AnnotationForge.html", diff --git a/data/annotationfuncs/annotationfuncsbioschemas.jsonld b/data/annotationfuncs/annotationfuncsbioschemas.jsonld index 6cf5166fb3aa4..b82bf28a69d14 100644 --- a/data/annotationfuncs/annotationfuncsbioschemas.jsonld +++ b/data/annotationfuncs/annotationfuncsbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-2.0", "sc:name": "AnnotationFuncs", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AnnotationFuncs.html", "sc:version": "1.24.0" diff --git a/data/annotationhub/annotationhubbioschemas.jsonld b/data/annotationhub/annotationhubbioschemas.jsonld index 4de4e25c1a795..93984e252dc7e 100644 --- a/data/annotationhub/annotationhubbioschemas.jsonld +++ b/data/annotationhub/annotationhubbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "BioConductor Package Maintainer", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "This package provides a client for the BioConductor corresponding web resource, which provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.", "sc:license": "Artistic-2.0", diff --git a/data/annotationhubdata/annotationhubdatabioschemas.jsonld b/data/annotationhubdata/annotationhubdatabioschemas.jsonld index 8927aa13d46dc..0f1b1d9fab0f0 100644 --- a/data/annotationhubdata/annotationhubdatabioschemas.jsonld +++ b/data/annotationhubdata/annotationhubdatabioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "BioConductor Package Maintainer", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard BioConductor data structures.", "sc:license": "Artistic-2.0", "sc:name": "AnnotationHubData", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AnnotationHubData.html", "sc:version": "1.4.1" diff --git a/data/annotationtools/annotationtoolsbioschemas.jsonld b/data/annotationtools/annotationtoolsbioschemas.jsonld index bddf58edf76ce..4bf2c2fd12bd8 100644 --- a/data/annotationtools/annotationtoolsbioschemas.jsonld +++ b/data/annotationtools/annotationtoolsbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/1471-2105-9-26", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/annotationtools", "@type": "sc:SoftwareApplication", @@ -24,8 +20,8 @@ "@id": "edam:data_2080" }, "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:applicationSubCategory": [ { @@ -39,11 +35,11 @@ } ], "sc:citation": [ - "pmcid:PMC2267709", "pubmed:18201381", { "@id": "https://doi.org/10.1186/1471-2105-9-26" - } + }, + "pmcid:PMC2267709" ], "sc:description": "Functions to annotate microarrays, find orthologs, and integrate heterogeneous gene expression profiles using annotation and other molecular biology information available as flat file database (plain text files).", "sc:featureList": [ @@ -57,12 +53,16 @@ "sc:license": "GPL-3.0", "sc:name": "annotationTools", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/annotationTools.html", "sc:version": "1.48.0" + }, + { + "@id": "https://doi.org/10.1186/1471-2105-9-26", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/annotatr/annotatrbioschemas.jsonld b/data/annotatr/annotatrbioschemas.jsonld index 2bfa0520f7f6d..44f846bdbfd36 100644 --- a/data/annotatr/annotatrbioschemas.jsonld +++ b/data/annotatr/annotatrbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-3.0", "sc:name": "annotatr", "sc:operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/annotatr.html", "sc:version": "1.0.2" diff --git a/data/annotqtl/annotqtlbioschemas.jsonld b/data/annotqtl/annotqtlbioschemas.jsonld index d55bbf905f188..3403dcb577880 100644 --- a/data/annotqtl/annotqtlbioschemas.jsonld +++ b/data/annotqtl/annotqtlbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Tool designed to gather the functional annotation of genes from several institutional databases for a specific chromosomal region.", "sc:name": "AnnotQTL", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:provider": "GenOuest", "sc:url": "http://annotqtl.genouest.org/", diff --git a/data/annotree/annotreebioschemas.jsonld b/data/annotree/annotreebioschemas.jsonld index b4dbdf868cb10..e7842e42140ab 100644 --- a/data/annotree/annotreebioschemas.jsonld +++ b/data/annotree/annotreebioschemas.jsonld @@ -15,9 +15,9 @@ "sc:license": "CC-BY-4.0", "sc:name": "AnnoTree", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "http://annotree.uwaterloo.ca" } \ No newline at end of file diff --git a/data/annotsv/annotsvbioschemas.jsonld b/data/annotsv/annotsvbioschemas.jsonld index 9af7e9facd78a..d948ba788af12 100644 --- a/data/annotsv/annotsvbioschemas.jsonld +++ b/data/annotsv/annotsvbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://orcid.org/0000-0002-4149-0857", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/AnnotSV", "@type": "sc:SoftwareApplication", @@ -28,6 +24,10 @@ "sc:name": "AnnotSV", "sc:operatingSystem": "Linux", "sc:url": "https://lbgi.fr/AnnotSV/" + }, + { + "@id": "https://orcid.org/0000-0002-4149-0857", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/annovar/annovarbioschemas.jsonld b/data/annovar/annovarbioschemas.jsonld index f5da188ee6dd9..ebdf2940ecc9a 100644 --- a/data/annovar/annovarbioschemas.jsonld +++ b/data/annovar/annovarbioschemas.jsonld @@ -35,9 +35,9 @@ ], "sc:name": "ANNOVAR", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://annovar.openbioinformatics.org/en/latest/" }, diff --git a/data/annovar_annotate_variation/annovar_annotate_variationbioschemas.jsonld b/data/annovar_annotate_variation/annovar_annotate_variationbioschemas.jsonld index 422409e2e836f..36661ae26db4a 100644 --- a/data/annovar_annotate_variation/annovar_annotate_variationbioschemas.jsonld +++ b/data/annovar_annotate_variation/annovar_annotate_variationbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "annovar_annotate_variation", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://annovar.openbioinformatics.org/en/latest/", "sc:version": "0.0.2" diff --git a/data/annovar_summarize/annovar_summarizebioschemas.jsonld b/data/annovar_summarize/annovar_summarizebioschemas.jsonld index d1f80ad8edf01..94d334fce2b75 100644 --- a/data/annovar_summarize/annovar_summarizebioschemas.jsonld +++ b/data/annovar_summarize/annovar_summarizebioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Annotate genetic variants detected from human genome.", "sc:name": "annovar_summarize", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://annovar.openbioinformatics.org/en/latest/", "sc:version": "1.0.0" diff --git a/data/anocva/anocvabioschemas.jsonld b/data/anocva/anocvabioschemas.jsonld index f13d3265c1a6b..6a440dbe2ab1f 100644 --- a/data/anocva/anocvabioschemas.jsonld +++ b/data/anocva/anocvabioschemas.jsonld @@ -15,11 +15,11 @@ "biotools:primaryContact": "Maciel C. Vidal", "sc:additionalType": "Library", "sc:citation": [ - "pubmed:28174516", + "pmcid:PMC5258722", { "@id": "https://doi.org/10.3389/fnins.2017.00016" }, - "pmcid:PMC5258722" + "pubmed:28174516" ], "sc:description": "A Non-Parametric Statistical Test to Compare Clustering Structures.", "sc:featureList": { @@ -28,9 +28,9 @@ "sc:license": "GPL-3.0", "sc:name": "ANOCVA", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://cran.r-project.org/web/packages/anocva/index.html", "sc:version": "0.1.1" diff --git a/data/anolea/anoleabioschemas.jsonld b/data/anolea/anoleabioschemas.jsonld index fbd5e0ca8f325..5b4f9471a10a0 100644 --- a/data/anolea/anoleabioschemas.jsonld +++ b/data/anolea/anoleabioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Server to assess the quality of a three dimensional protein structure. It uses a statistical potential at the atomic level and gives an energy profile as ouput. Also, the user can choose to have a molecular graphical output representation of the energy profile.", "sc:name": "ANOLEA", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "http://melolab.org/anolea/index.html" } \ No newline at end of file diff --git a/data/anota/anotabioschemas.jsonld b/data/anota/anotabioschemas.jsonld index 42369bf2538fe..964129845b15e 100644 --- a/data/anota/anotabioschemas.jsonld +++ b/data/anota/anotabioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Ola Larsson", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "This package allows for genome wide studies of translational control using partial variances and the random variance model, identifying differences in actively translated mRNA levels that are independent of underlying differences in cytosolic mRNA levels.", "sc:license": "GPL-3.0", "sc:name": "anota", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/anota.html", "sc:version": "1.22.0" diff --git a/data/anota2seq/anota2seqbioschemas.jsonld b/data/anota2seq/anota2seqbioschemas.jsonld index 67c977ae283da..27bff6e3a991b 100644 --- a/data/anota2seq/anota2seqbioschemas.jsonld +++ b/data/anota2seq/anota2seqbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-3.0", "sc:name": "anota2seq", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/anota2seq.html", "sc:version": "1.2.0" diff --git a/data/anpela/anpelabioschemas.jsonld b/data/anpela/anpelabioschemas.jsonld index 6d7aae30ac2a3..9cff99d300a8e 100644 --- a/data/anpela/anpelabioschemas.jsonld +++ b/data/anpela/anpelabioschemas.jsonld @@ -11,19 +11,19 @@ "@id": "https://bio.tools/ANPELA", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Jianbo Fu", - "Jing Tang", "Feng Zhu", - "Yunxia Wang" + "Yunxia Wang", + "Jianbo Fu", + "Jing Tang" ], "sc:additionalType": "Web application", "sc:description": "Analysis and Performance Assessment of Label-free Proteome Quantification.", "sc:license": "Unlicense", "sc:name": "ANPELA", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://idrblab.cn/anpela/" } \ No newline at end of file diff --git a/data/antar/antarbioschemas.jsonld b/data/antar/antarbioschemas.jsonld index e7af242c31cc2..e1b06a74ccc6b 100644 --- a/data/antar/antarbioschemas.jsonld +++ b/data/antar/antarbioschemas.jsonld @@ -18,9 +18,9 @@ "sc:description": "Predict miRNA targets for human and mouse using the two predictive models: a model trained from microarry studies following transfection, and a model trained from PAR-CLIP datasets.", "sc:name": "Antar", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:provider": "binf.ku.dk", "sc:url": "http://servers.binf.ku.dk/antar/index.php" diff --git a/data/antarna/antarnabioschemas.jsonld b/data/antarna/antarnabioschemas.jsonld index 4371ed7803940..196cc187e6b4b 100644 --- a/data/antarna/antarnabioschemas.jsonld +++ b/data/antarna/antarnabioschemas.jsonld @@ -9,14 +9,18 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0001-8231-3323", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/antarna", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Robert Kleinkauf", { "@id": "http://orcid.org/0000-0001-8231-3323" - } + }, + "Robert Kleinkauf" ], "edam:has_input": { "@id": "edam:data_0880" @@ -48,8 +52,8 @@ "sc:isAccessibleForFree": true, "sc:name": "AntaRNA", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:provider": [ @@ -65,10 +69,6 @@ { "@id": "https://doi.org/10.1093/bioinformatics/btv319", "@type": "sc:CreativeWork" - }, - { - "@id": "http://orcid.org/0000-0001-8231-3323", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/antiangiopred/antiangiopredbioschemas.jsonld b/data/antiangiopred/antiangiopredbioschemas.jsonld index 9c41ff859fefc..a1d3a629c8421 100644 --- a/data/antiangiopred/antiangiopredbioschemas.jsonld +++ b/data/antiangiopred/antiangiopredbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "User-friendly web server for the prediction of anti-angiogenic peptides.", "sc:name": "AntiAngioPred", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://crdd.osdd.net/raghava/antiangiopred/" } \ No newline at end of file diff --git a/data/antibp/antibpbioschemas.jsonld b/data/antibp/antibpbioschemas.jsonld index f07775b6cdb0a..2d34f77894be3 100644 --- a/data/antibp/antibpbioschemas.jsonld +++ b/data/antibp/antibpbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Antibp server predicts the antibacterial peptides in a protein sequence.Prediction can be done by using QM,ANN and SVM based methods using binary patterns of peptide sequences and overall accuracy of this server is ~92.11%.This server can help in finding and designing of peptides based antibiotics.", "sc:name": "AntiBP", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://www.imtech.res.in/raghava/antibp/" diff --git a/data/anticp/anticpbioschemas.jsonld b/data/anticp/anticpbioschemas.jsonld index 0b91a1b3795a6..49cfc99da12ee 100644 --- a/data/anticp/anticpbioschemas.jsonld +++ b/data/anticp/anticpbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Web based prediction server for anticancer peptides. SVM models developed are based on amino acid composition and binary profile features. Positive dataset consists of 225 antimicrobial peptides with anticancer properties.", "sc:name": "AntiCP", "sc:operatingSystem": [ - "Windows", "Mac", + "Windows", "Linux" ], "sc:url": "http://crdd.osdd.net/raghava/anticp/" diff --git a/data/antigendb/antigendbbioschemas.jsonld b/data/antigendb/antigendbbioschemas.jsonld index 9a4d77f176b50..cecd70ea0ace8 100644 --- a/data/antigendb/antigendbbioschemas.jsonld +++ b/data/antigendb/antigendbbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Contains 500 antigens to pathogenic species curated from the literature and other immunological resources. In it, a database entry contains information regarding the sequence, structure, origin, etc. of an antigen with additional information such as B and T-cell epitopes, MHC binding, function, gene-expression and post translational modifications, where available. It also provides links to major internal and external databases.", "sc:name": "AntigenDB", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://www.imtech.res.in/raghava/antigendb/" diff --git a/data/antigenic/antigenicbioschemas.jsonld b/data/antigenic/antigenicbioschemas.jsonld index 28a7a6e125afd..d150aa3a04644 100644 --- a/data/antigenic/antigenicbioschemas.jsonld +++ b/data/antigenic/antigenicbioschemas.jsonld @@ -12,27 +12,27 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "Wellcome Trust", "UK MRC", "UK BBSRC", - "EMBOSS Contributors" + "EMBOSS Contributors", + "Wellcome Trust" ], "sc:description": "Find antigenic sites in proteins.", "sc:funder": [ "Wellcome Trust", - "UK MRC", - "UK BBSRC" + "UK BBSRC", + "UK MRC" ], "sc:license": "GPL-3.0", "sc:name": "antigenic", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:provider": [ - "EMBOSS", - "EMBL EBI" + "EMBL EBI", + "EMBOSS" ], "sc:url": "http://emboss.open-bio.org/rel/rel6/apps/antigenic.html", "sc:version": "r6" diff --git a/data/antiprofiles/antiprofilesbioschemas.jsonld b/data/antiprofiles/antiprofilesbioschemas.jsonld index 11293365bd69f..ff490be14153d 100644 --- a/data/antiprofiles/antiprofilesbioschemas.jsonld +++ b/data/antiprofiles/antiprofilesbioschemas.jsonld @@ -20,8 +20,8 @@ "sc:name": "antiProfiles", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/antiProfiles.html", "sc:version": "1.14.0" diff --git a/data/antismash/antismashbioschemas.jsonld b/data/antismash/antismashbioschemas.jsonld index a82baf5f0fbcb..00d70f3c1259e 100644 --- a/data/antismash/antismashbioschemas.jsonld +++ b/data/antismash/antismashbioschemas.jsonld @@ -17,14 +17,14 @@ "sc:description": "Rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genomes. It integrates and cross-links with a large number of in silico secondary metabolite analysis tools that have been published earlier.", "sc:name": "antiSMASH", "sc:operatingSystem": [ - "Windows", "Mac", + "Windows", "Linux" ], "sc:url": "http://antismash.secondarymetabolites.org", "sc:version": [ - "1", + "2.0", "3.0", - "2.0" + "1" ] } \ No newline at end of file diff --git a/data/antmap/antmapbioschemas.jsonld b/data/antmap/antmapbioschemas.jsonld index d0877efbf4831..2393c1c409e81 100644 --- a/data/antmap/antmapbioschemas.jsonld +++ b/data/antmap/antmapbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "It is a software for constructing genetic linkage maps using an ant colony optimization algorithm. It seeks the linear order of loci that minimizes the sum of adjacent recombination fractions or that maximizes the log likelihood of locus order. Analyses based on simulated data sets indicated that the algorithm displayed a high efficiency level. The high performance of the algorithm enabled to save time and labor, and also to validate an estimated order by bootstrap tests.", "sc:name": "AntMap", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://lbm.ab.a.u-tokyo.ac.jp/~iwata/antmap/index.html", "sc:version": "1.2" diff --git a/data/anyexpress/anyexpressbioschemas.jsonld b/data/anyexpress/anyexpressbioschemas.jsonld index 281315353d2c6..ee05f242cda3e 100644 --- a/data/anyexpress/anyexpressbioschemas.jsonld +++ b/data/anyexpress/anyexpressbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "AnyExpress is a software package that combines cross-platform gene expression data using a fast interval-matching algorithm.", "sc:name": "AnyExpress", "sc:operatingSystem": [ - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://anyexpress.sourceforge.net/", "sc:version": "1.0" diff --git a/data/apache_taverna/apache_tavernabioschemas.jsonld b/data/apache_taverna/apache_tavernabioschemas.jsonld index fe925fd450ca2..313d6772424ba 100644 --- a/data/apache_taverna/apache_tavernabioschemas.jsonld +++ b/data/apache_taverna/apache_tavernabioschemas.jsonld @@ -11,15 +11,15 @@ "@id": "https://bio.tools/apache_taverna", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Apache Taverna mailing lists", - "Apache Taverna community" + "Apache Taverna community", + "Apache Taverna mailing lists" ], "sc:additionalType": [ - "Web service", - "Web application", - "Workbench", "Command-line tool", "Desktop application", + "Workbench", + "Web service", + "Web application", "Web API" ], "sc:author": "Apache Taverna community", @@ -27,13 +27,13 @@ "sc:license": "Apache-2.0", "sc:name": "Apache Taverna", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:provider": [ - "Apache Software Foundation", - "cs.manchester.ac.uk" + "cs.manchester.ac.uk", + "Apache Software Foundation" ], "sc:url": "http://taverna.incubator.apache.org/", "sc:version": "3" diff --git a/data/apcomplex/apcomplexbioschemas.jsonld b/data/apcomplex/apcomplexbioschemas.jsonld index efdb02cb975a2..4a953b2994de0 100644 --- a/data/apcomplex/apcomplexbioschemas.jsonld +++ b/data/apcomplex/apcomplexbioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "GPL-3.0", "sc:name": "apComplex", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/apComplex.html", diff --git a/data/apecs/apecsbioschemas.jsonld b/data/apecs/apecsbioschemas.jsonld index 434a5c9711723..85bbb12350b1a 100644 --- a/data/apecs/apecsbioschemas.jsonld +++ b/data/apecs/apecsbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Proteomics method for intensity-based precursor ion selection, using a MALDI-TOF/TOF instrument, from a complex sample separated by 2D-LC.", "sc:name": "APECS", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "https://trac.nbic.nl/apecs/" } \ No newline at end of file diff --git a/data/apeglm/apeglmbioschemas.jsonld b/data/apeglm/apeglmbioschemas.jsonld index 28e09c8c1c6f5..091682308a46d 100644 --- a/data/apeglm/apeglmbioschemas.jsonld +++ b/data/apeglm/apeglmbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "GPL-2.0", "sc:name": "apeglm", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/apeglm.html", "sc:version": "1.2.0" diff --git a/data/apex/apexbioschemas.jsonld b/data/apex/apexbioschemas.jsonld index bc39188824127..0c918bfad9a4a 100644 --- a/data/apex/apexbioschemas.jsonld +++ b/data/apex/apexbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Absolute protein expression Quantitative Proteomics Tool, is a free and open source Java implementation of the APEX technique for the quantitation of proteins based on standard LC- MS/MS proteomics data. This technique uses machine learning algorithms to help correct for variable peptide detection related to certain peptide physicochemical properties which favor or hinder detection. A sample data set and descriptive tutorial help to acquaint users with the operation of the tool.", "sc:name": "APEX", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "http://sourceforge.net/projects/apexqpt/", diff --git a/data/apex_r/apex_rbioschemas.jsonld b/data/apex_r/apex_rbioschemas.jsonld index 2ec8fde2209f9..0467885ee1b17 100644 --- a/data/apex_r/apex_rbioschemas.jsonld +++ b/data/apex_r/apex_rbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0003-2226-8692", - "@type": "schema:Person" - }, { "@id": "https://doi.org/10.1111/1755-0998.12567", "@type": "sc:CreativeWork" @@ -43,6 +39,10 @@ ], "sc:url": "https://cran.r-project.org/web/packages/apex/index.html", "sc:version": "1.0.3" + }, + { + "@id": "http://orcid.org/0000-0003-2226-8692", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/aphidbase/aphidbasebioschemas.jsonld b/data/aphidbase/aphidbasebioschemas.jsonld index 90a6a5a7002d3..caac7359212cc 100644 --- a/data/aphidbase/aphidbasebioschemas.jsonld +++ b/data/aphidbase/aphidbasebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "AphidBase", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:provider": "GenOuest", "sc:url": "http://aphidbase.com/" diff --git a/data/apid/apidbioschemas.jsonld b/data/apid/apidbioschemas.jsonld index 01e9376b593c4..39dec80572474 100644 --- a/data/apid/apidbioschemas.jsonld +++ b/data/apid/apidbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Agile Protein Interaction DataAnalyzer (APID) allows you to query protein-protein interactions using a common platform facilitating comparison across different datasets. Currently supported interaction databases are BIND, HPRD, DIP, IntAct, and MINT.", "sc:name": "APID", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://bioinfow.dep.usal.es/apid/" diff --git a/data/apollo/apollobioschemas.jsonld b/data/apollo/apollobioschemas.jsonld index dfede186f7b2a..e433992e537c9 100644 --- a/data/apollo/apollobioschemas.jsonld +++ b/data/apollo/apollobioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Apollo is a genome annotation viewer and editor. Apollo allows researchers to explore genomic annotations at many levels of detail, and to perform expert annotation curation, all in a graphical environment.", "sc:name": "Apollo Genome Annotation and Curation Tool", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://apollo.berkeleybop.org" } \ No newline at end of file diff --git a/data/appa/appabioschemas.jsonld b/data/appa/appabioschemas.jsonld index 18f2b62442bd7..d3c39ccd40e72 100644 --- a/data/appa/appabioschemas.jsonld +++ b/data/appa/appabioschemas.jsonld @@ -9,46 +9,46 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1093/NAR/GKZ358", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/AppA", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ + "Minh N Nguyen", "Chandra S Verma", - "Pingyu Zhong", - "Minh N Nguyen" + "Pingyu Zhong" ], "sc:additionalType": "Web application", "sc:citation": [ + "pubmed:31069385", + "pmcid:PMC6602511", { "@id": "https://doi.org/10.1093/NAR/GKZ358" - }, - "pmcid:PMC6602511", - "pubmed:31069385" + } ], "sc:description": "Web server for analysis, comparison, and visualization of contact residues and interfacial waters of antibody-antigen structures and models.", "sc:featureList": [ - { - "@id": "edam:operation_0394" - }, { "@id": "edam:operation_2950" }, { "@id": "edam:operation_0272" + }, + { + "@id": "edam:operation_0394" } ], "sc:license": "Unlicense", "sc:name": "AppA", "sc:operatingSystem": [ - "Windows", "Mac", + "Windows", "Linux" ], "sc:url": "http://mspc.bii.a-star.edu.sg/minhn/appa.html" + }, + { + "@id": "https://doi.org/10.1093/NAR/GKZ358", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/apparent/apparentbioschemas.jsonld b/data/apparent/apparentbioschemas.jsonld index 307858abc9b56..7a491a71422b6 100644 --- a/data/apparent/apparentbioschemas.jsonld +++ b/data/apparent/apparentbioschemas.jsonld @@ -15,11 +15,11 @@ "biotools:primaryContact": "Arthur Melo", "sc:additionalType": "Library", "sc:citation": [ - "pmcid:PMC6396488", + "pubmed:30819089", { "@id": "https://doi.org/10.1186/s12859-019-2662-3" }, - "pubmed:30819089" + "pmcid:PMC6396488" ], "sc:description": "R package for accurate SNP-based parentage analysis in the absence of guiding information.", "sc:featureList": [ @@ -27,18 +27,18 @@ "@id": "edam:operation_3661" }, { - "@id": "edam:operation_3196" + "@id": "edam:operation_0484" }, { - "@id": "edam:operation_0484" + "@id": "edam:operation_3196" } ], "sc:license": "GPL-2.0", "sc:name": "apparent", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "https://cran.r-project.org/package=apparent", "sc:version": "1.1" diff --git a/data/appex/appexbioschemas.jsonld b/data/appex/appexbioschemas.jsonld index 1c7b90f147fbf..033f4dba5e7c9 100644 --- a/data/appex/appexbioschemas.jsonld +++ b/data/appex/appexbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Web-based platform to perform survival analysis, particularly, to support identifying molecular signatures significantly associated with cancer patients’ outcome. It provides various analysis methods to discover genes or any other molecules associated with survival of cancer patients.", "sc:name": "APPEX", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://www.appex.kr/appex/" } \ No newline at end of file diff --git a/data/appris/apprisbioschemas.jsonld b/data/appris/apprisbioschemas.jsonld index 1efa93d081b0b..d5012d54093b5 100644 --- a/data/appris/apprisbioschemas.jsonld +++ b/data/appris/apprisbioschemas.jsonld @@ -31,8 +31,8 @@ ], "sc:provider": [ "INB", - "CNIO", - "cnio.es" + "cnio.es", + "CNIO" ], "sc:url": "http://appris.bioinfo.cnio.es/#/database", "sc:version": "23" diff --git a/data/approve/approvebioschemas.jsonld b/data/approve/approvebioschemas.jsonld index 42d1b838f88ae..c348a9c4d8a7f 100644 --- a/data/approve/approvebioschemas.jsonld +++ b/data/approve/approvebioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Computational tool that predicts the interaction of a PPR (pentatricopeptide repeat) with its RNA binding site.", "sc:name": "aPPRove", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "https://www.cs.colostate.edu/~approve/" } \ No newline at end of file diff --git a/data/apricot/apricotbioschemas.jsonld b/data/apricot/apricotbioschemas.jsonld index 2e96b227bcfbd..363b0ff7483d2 100644 --- a/data/apricot/apricotbioschemas.jsonld +++ b/data/apricot/apricotbioschemas.jsonld @@ -9,21 +9,17 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1093/NAR/GKX137", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/apricot", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Support", "sc:additionalType": "Command-line tool", "sc:citation": [ + "pubmed:28334975", "pmcid:PMC5499795", { "@id": "https://doi.org/10.1093/NAR/GKX137" - }, - "pubmed:28334975" + } ], "sc:description": "Integrated computational pipeline for the sequence-based identification and characterization of RNA-binding proteins.", "sc:featureList": { @@ -31,6 +27,10 @@ }, "sc:name": "APRICOT", "sc:url": "https://pypi.org/project/bio-apricot/" + }, + { + "@id": "https://doi.org/10.1093/NAR/GKX137", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/apse/apsebioschemas.jsonld b/data/apse/apsebioschemas.jsonld index 8fdaa73c95ce2..378d60d600dcc 100644 --- a/data/apse/apsebioschemas.jsonld +++ b/data/apse/apsebioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "This search engine recommends PubMed articles relevant to a given article. It automatically extracts keywords from the title and abstract indexed in PubMed to generate recommendations. The database contains all PubMed records, providing up to 60 recommendations per searched article. Researchers were invited to annotate degrees of relevance for provided recommendations. All evaluations received will be curated into a benchmark dataset to be made available for free download and redistribution.", "sc:name": "Article-based PubMed Search Engine (APSE)", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://pubmed.ict.griffith.edu.au/" } \ No newline at end of file diff --git a/data/aqua-duct/aqua-ductbioschemas.jsonld b/data/aqua-duct/aqua-ductbioschemas.jsonld index 545ea2b8ee533..c54181e8cda0f 100644 --- a/data/aqua-duct/aqua-ductbioschemas.jsonld +++ b/data/aqua-duct/aqua-ductbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Tool that facilitates analysis of the behaviour of molecules that penetrate any selected region in a protein.", "sc:name": "AQUA-DUCT", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://www.aquaduct.pl/" } \ No newline at end of file diff --git a/data/aquaria/aquariabioschemas.jsonld b/data/aquaria/aquariabioschemas.jsonld index 7fa9c7154c301..e7cb034980f4a 100644 --- a/data/aquaria/aquariabioschemas.jsonld +++ b/data/aquaria/aquariabioschemas.jsonld @@ -15,34 +15,34 @@ "Web application" ], "sc:author": [ - "Andrea Schafferhans", "Seán I O'Donoghue", - "Kenneth S Sabir", - "Christian Stolte" + "Christian Stolte", + "Andrea Schafferhans", + "Kenneth S Sabir" ], "sc:contributor": [ + "Manfred Roos", + "Benjamin Wellmann", "Fabian A Buske", "Vivian Ho", "Maria Kalemanov", "Julian Heinrich", - "Benjamin Wellmann", "Burkhard Rost", - "Manfred Roos", "Nelson Perdigão" ], "sc:description": "Simplifying the generation of insight from protein structures through structure visualisation, annotated with protein features; loads sequence-to-structure alignments from the PSSH2 database, sequence features from UniProt and Interpro and user defined features on demand from JSON files; there is also a WebAPI (see ...).", "sc:license": "GPL-2.0", "sc:name": "Aquaria", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:provider": [ - "School of Molecular Bioscience, The University of Sydney", - "Division of Genomics and Epigenetics, Garvan Institute of Medical Research, Sydney", "Department for Bioinformatics and Computational Biology, Technische Universität München", - "Digital Productivity, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Sydney" + "Division of Genomics and Epigenetics, Garvan Institute of Medical Research, Sydney", + "Digital Productivity, Commonwealth Scientific and Industrial Research Organisation (CSIRO), Sydney", + "School of Molecular Bioscience, The University of Sydney" ], "sc:url": "http://aquaria.ws", "sc:version": "1" diff --git a/data/aquasaxs/aquasaxsbioschemas.jsonld b/data/aquasaxs/aquasaxsbioschemas.jsonld index 85f51efd86d82..89583b201d4ba 100644 --- a/data/aquasaxs/aquasaxsbioschemas.jsonld +++ b/data/aquasaxs/aquasaxsbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AquaSAXS", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://lorentz.dynstr.pasteur.fr/aquasaxs.php" } \ No newline at end of file diff --git a/data/ar_nhpred/ar_nhpredbioschemas.jsonld b/data/ar_nhpred/ar_nhpredbioschemas.jsonld index 27f79e3f856f4..809be116fe172 100644 --- a/data/ar_nhpred/ar_nhpredbioschemas.jsonld +++ b/data/ar_nhpred/ar_nhpredbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Predicts the aromatic backbone NH interaction in a given amino acid sequence where the pi ring of aromatic residues interact with the backbone NH groups.", "sc:name": "Ar_NHPred", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://www.imtech.res.in/raghava/ar_nhpred" } \ No newline at end of file diff --git a/data/arabidopsis_efp_browser/arabidopsis_efp_browserbioschemas.jsonld b/data/arabidopsis_efp_browser/arabidopsis_efp_browserbioschemas.jsonld index ac15339f9eb66..08aa7ae582974 100644 --- a/data/arabidopsis_efp_browser/arabidopsis_efp_browserbioschemas.jsonld +++ b/data/arabidopsis_efp_browser/arabidopsis_efp_browserbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "An \"\"Electronic Fluorescent Pictograph\"\" browser for exploring and analyzing large-scale biological data sets (using example of Arabidopsis). Explores microarray and other data for hypothesis generation. eFP Browser engine paints data from large-scale data sets onto pictographic representations of the experimental samples used to generate the data sets.", "sc:name": "Arabidopsis eFP Browser", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://bar.utoronto.ca/efp_arabidopsis/cgi-bin/efpWeb.cgi" diff --git a/data/arabidopsis_growth_regulators_network/arabidopsis_growth_regulators_networkbioschemas.jsonld b/data/arabidopsis_growth_regulators_network/arabidopsis_growth_regulators_networkbioschemas.jsonld index c4af3663232fe..426c74619f582 100644 --- a/data/arabidopsis_growth_regulators_network/arabidopsis_growth_regulators_networkbioschemas.jsonld +++ b/data/arabidopsis_growth_regulators_network/arabidopsis_growth_regulators_networkbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Integrated network of Arabidopsis growth regulators.", "sc:name": "Arabidopsis growth regulators network", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:provider": "ugent.be", "sc:url": "http://bioinformatics.psb.ugent.be/supplementary_data/ehsab/gene_prioritization/", diff --git a/data/arabidopsis_interactions_viewer/arabidopsis_interactions_viewerbioschemas.jsonld b/data/arabidopsis_interactions_viewer/arabidopsis_interactions_viewerbioschemas.jsonld index a042c69fa55cc..e414ba353cf4b 100644 --- a/data/arabidopsis_interactions_viewer/arabidopsis_interactions_viewerbioschemas.jsonld +++ b/data/arabidopsis_interactions_viewer/arabidopsis_interactions_viewerbioschemas.jsonld @@ -9,25 +9,29 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1104/pp.18.01216", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/Arabidopsis_Interactions_Viewer", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Nicholas Provart", "sc:additionalType": "Web application", "sc:citation": [ + "pubmed:30679268", "pmcid:PMC6446796", { "@id": "https://doi.org/10.1104/pp.18.01216" - }, - "pubmed:30679268" + } ], "sc:description": "Proteome-wide structure-based prediction of protein-protein interactions in Arabidopsis.", "sc:featureList": [ { - "@id": "edam:operation_2497" + "@id": "edam:operation_0478" }, { - "@id": "edam:operation_0478" + "@id": "edam:operation_2497" }, { "@id": "edam:operation_2949" @@ -35,15 +39,11 @@ ], "sc:name": "Arabidopsis Interactions Viewer", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bar.utoronto.ca/interactions2/" - }, - { - "@id": "https://doi.org/10.1104/pp.18.01216", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/arachne/arachnebioschemas.jsonld b/data/arachne/arachnebioschemas.jsonld index 2150aac756614..a8504f06f3c93 100644 --- a/data/arachne/arachnebioschemas.jsonld +++ b/data/arachne/arachnebioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Program for assembling data from whole genome shotgun sequencing experiments.", "sc:name": "Arachne", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "https://www.broadinstitute.org/computational-rd/computational-research-and-development" } \ No newline at end of file diff --git a/data/arachnoserver/arachnoserverbioschemas.jsonld b/data/arachnoserver/arachnoserverbioschemas.jsonld index b0980c6ba8897..bf90310411917 100644 --- a/data/arachnoserver/arachnoserverbioschemas.jsonld +++ b/data/arachnoserver/arachnoserverbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "ArachnoServer", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://www.arachnoserver.org" } \ No newline at end of file diff --git a/data/aracne/aracnebioschemas.jsonld b/data/aracne/aracnebioschemas.jsonld index 9ee4dc79e1b4e..de6c737265f79 100644 --- a/data/aracne/aracnebioschemas.jsonld +++ b/data/aracne/aracnebioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "ARACNE (Algorithm for the Reconstruction of Accurate Cellular Networks), a novel algorithm, using microarray expression profiles, specifically designed to scale up to the complexity of regulatory networks in mammalian cells, yet general enough to address a wider range of network deconvolution problems. This method uses an information theoretic approach to eliminate the vast majority of indirect interactions typically inferred by pairwise analysis.", "sc:name": "ARACNE", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://wiki.c2b2.columbia.edu/califanolab/index.php/Software/ARACNE?", "sc:version": "2" diff --git a/data/aramemnon/aramemnonbioschemas.jsonld b/data/aramemnon/aramemnonbioschemas.jsonld index 17b4be1cbd355..3b18a53fdf032 100644 --- a/data/aramemnon/aramemnonbioschemas.jsonld +++ b/data/aramemnon/aramemnonbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1104/pp.011577", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/aramemnon", "@type": "sc:SoftwareApplication", @@ -34,10 +30,10 @@ ], "sc:citation": [ "pubmed:12529511", + "pmcid:PMC166783", { "@id": "https://doi.org/10.1104/pp.011577" - }, - "pmcid:PMC166783" + } ], "sc:description": "Plant membrane proteins.", "sc:featureList": { @@ -46,11 +42,15 @@ "sc:name": "ARAMEMNON database of plant membrane proteins", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:provider": "Botanical Institute University of Cologne", "sc:url": "http://aramemnon.botanik.uni-koeln.de/" + }, + { + "@id": "https://doi.org/10.1104/pp.011577", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/araport/araportbioschemas.jsonld b/data/araport/araportbioschemas.jsonld index 30f43263d66e1..8fb87a68d32ab 100644 --- a/data/araport/araportbioschemas.jsonld +++ b/data/araport/araportbioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "Not licensed", "sc:name": "Araport", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "https://www.araport.org/" diff --git a/data/arc/arcbioschemas.jsonld b/data/arc/arcbioschemas.jsonld index 529ad9be2d656..67c5bb75334ed 100644 --- a/data/arc/arcbioschemas.jsonld +++ b/data/arc/arcbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:name": "ARC", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://ibest.github.io/ARC/", "sc:version": "1.1.4-beta" diff --git a/data/arcadia/arcadiabioschemas.jsonld b/data/arcadia/arcadiabioschemas.jsonld index 978f1da39b502..1f89598f68836 100644 --- a/data/arcadia/arcadiabioschemas.jsonld +++ b/data/arcadia/arcadiabioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Light-weight, cross-platform, C++ desktop application designed for visualizing biological networks such as metabolic pathways.It is a viewer, not an editor: this means a simpler interface, offering multiple perspectives on the same data, with a focus on navigation. It translates text-based descriptions of biological networks into standardized diagrams. Users can view the same model from different perspectives and easily alter the layout to emulate traditional textbook representations.", "sc:name": "Arcadia", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://arcadiapathways.sourceforge.net/", "sc:version": "1.0rc2" diff --git a/data/archaeafun/archaeafunbioschemas.jsonld b/data/archaeafun/archaeafunbioschemas.jsonld index b2e4b5d611145..63325aea1b476 100644 --- a/data/archaeafun/archaeafunbioschemas.jsonld +++ b/data/archaeafun/archaeafunbioschemas.jsonld @@ -10,8 +10,8 @@ }, "@graph": [ { - "@id": "https://orcid.org/0000-0003-0316-5866", - "@type": "schema:Person" + "@id": "https://doi.org/10.1110/ps.0225102", + "@type": "sc:CreativeWork" }, { "@id": "https://bio.tools/archaeafun", @@ -35,11 +35,11 @@ "@id": "edam:topic_1775" }, "sc:citation": [ - "pmcid:PMC2373754", - "pubmed:12441387", { "@id": "https://doi.org/10.1110/ps.0225102" - } + }, + "pmcid:PMC2373754", + "pubmed:12441387" ], "sc:description": "Ab initio predictions of enzyme class (if any) from sequence.", "sc:featureList": { @@ -49,25 +49,25 @@ "sc:license": "Other", "sc:name": "ArchaeaFun", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:provider": "CBS", "sc:softwareHelp": [ { - "@id": "http://www.cbs.dtu.dk/services/ArchaeaFun/instructions.php" + "@id": "http://www.cbs.dtu.dk/services/ArchaeaFun/" }, { - "@id": "http://www.cbs.dtu.dk/services/ArchaeaFun/" + "@id": "http://www.cbs.dtu.dk/services/ArchaeaFun/instructions.php" } ], "sc:url": "http://cbs.dtu.dk/services/ArchaeaFun/", "sc:version": "1.0" }, { - "@id": "https://doi.org/10.1110/ps.0225102", - "@type": "sc:CreativeWork" + "@id": "https://orcid.org/0000-0003-0316-5866", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/archaeopteryx/archaeopteryxbioschemas.jsonld b/data/archaeopteryx/archaeopteryxbioschemas.jsonld index 9e906f0c1ccd6..741eca5a3753c 100644 --- a/data/archaeopteryx/archaeopteryxbioschemas.jsonld +++ b/data/archaeopteryx/archaeopteryxbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "Archaeopteryx", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://en.bio-soft.net/tree/ATV.html" } \ No newline at end of file diff --git a/data/archcandy/archcandybioschemas.jsonld b/data/archcandy/archcandybioschemas.jsonld index 4fcf5c0c14a30..d1ede4bdbc096 100644 --- a/data/archcandy/archcandybioschemas.jsonld +++ b/data/archcandy/archcandybioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Tool able to decode protein sequence motifs that have a potential to form amyloids.", "sc:name": "ArchCandy", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "http://bioinfo.montp.cnrs.fr/?r=ArchCandy" } \ No newline at end of file diff --git a/data/archdb/archdbbioschemas.jsonld b/data/archdb/archdbbioschemas.jsonld index e4f9135f6c7fc..7b38bbd03c1a3 100644 --- a/data/archdb/archdbbioschemas.jsonld +++ b/data/archdb/archdbbioschemas.jsonld @@ -9,14 +9,14 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1093/nar/gkt1189", - "@type": "sc:CreativeWork" - }, { "@id": "http://orcid.org/0000-0001-5210-4387", "@type": "schema:Person" }, + { + "@id": "https://doi.org/10.1093/nar/gkt1189", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/archdb", "@type": "sc:SoftwareApplication", @@ -25,11 +25,11 @@ "@id": "http://orcid.org/0000-0001-5210-4387" }, "sc:citation": [ + "pubmed:24265221", { "@id": "https://doi.org/10.1093/nar/gkt1189" }, - "pmcid:PMC3964960", - "pubmed:24265221" + "pmcid:PMC3964960" ], "sc:description": "Structural classification of loops extracted from known protein structures.", "sc:featureList": { @@ -37,9 +37,9 @@ }, "sc:name": "ArchDB14", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:provider": "upf.edu", "sc:url": "http://sbi.imim.es/archdb/" diff --git a/data/archidart/archidartbioschemas.jsonld b/data/archidart/archidartbioschemas.jsonld index 3b72210218184..5321c36e39698 100644 --- a/data/archidart/archidartbioschemas.jsonld +++ b/data/archidart/archidartbioschemas.jsonld @@ -11,16 +11,16 @@ "@id": "https://bio.tools/archidart", "@type": "sc:SoftwareApplication", "sc:additionalType": [ - "Library", - "Web application" + "Web application", + "Library" ], "sc:description": "Plant Root System Architecture Analysis Using DART and RSML Files.", "sc:license": "GPL-2.0", "sc:name": "archiDART", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://archidart.github.io", "sc:version": "3.3" diff --git a/data/archip/archipbioschemas.jsonld b/data/archip/archipbioschemas.jsonld index 6203bd119abcb..43219cfde8ffd 100644 --- a/data/archip/archipbioschemas.jsonld +++ b/data/archip/archipbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "ArchiP", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://mouse.belozersky.msu.ru/~evgeniy/cgi-bin/proton/proton.php?subproj=archip" } \ No newline at end of file diff --git a/data/archki/archkibioschemas.jsonld b/data/archki/archkibioschemas.jsonld index 4c28738fc1fc0..7a7b61bcadadf 100644 --- a/data/archki/archkibioschemas.jsonld +++ b/data/archki/archkibioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "This tool performs a structural classification of kinase loops with information of functional residues to find relationships between structure and function of classified kinase-loops.", "sc:name": "ArchKI", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://bioinf.uab.es/cgi-bin/archki/loops.pl?class=all&set=ArchKI" } \ No newline at end of file diff --git a/data/archpred/archpredbioschemas.jsonld b/data/archpred/archpredbioschemas.jsonld index b618a6e679c03..428e8a543e292 100644 --- a/data/archpred/archpredbioschemas.jsonld +++ b/data/archpred/archpredbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "ArchPRED predicts the structure of loop regions in protein structures based on a fragment-search based method. Given a query loop of unknown structure, ArchPRED identifies which loops of know structures are likely to share conformational similarity with the query loop.", "sc:name": "ArchPred", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://www.bioinsilico.org/ARCHPRED/" diff --git a/data/archschema/archschemabioschemas.jsonld b/data/archschema/archschemabioschemas.jsonld index 4405d527eb7e6..95ed5e8beabdc 100644 --- a/data/archschema/archschemabioschemas.jsonld +++ b/data/archschema/archschemabioschemas.jsonld @@ -15,8 +15,8 @@ "sc:name": "ArchSchema", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://www.ebi.ac.uk/Tools/archschema/", "sc:version": "1.1" diff --git a/data/ard2/ard2bioschemas.jsonld b/data/ard2/ard2bioschemas.jsonld index d291f20b73371..3e9a4ecb15818 100644 --- a/data/ard2/ard2bioschemas.jsonld +++ b/data/ard2/ard2bioschemas.jsonld @@ -15,8 +15,8 @@ "sc:name": "ARD2", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://cbdm-01.zdv.uni-mainz.de/~fournier/ard2/" } \ No newline at end of file diff --git a/data/ardock/ardockbioschemas.jsonld b/data/ardock/ardockbioschemas.jsonld index cd6a32bca7b08..b7e65154a45ab 100644 --- a/data/ardock/ardockbioschemas.jsonld +++ b/data/ardock/ardockbioschemas.jsonld @@ -23,12 +23,12 @@ "sc:name": "arDock", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:provider": [ - "UCBL", - "CNRS" + "CNRS", + "UCBL" ], "sc:url": "http://ardock.ibcp.fr", "sc:version": "0.9" diff --git a/data/aresite/aresitebioschemas.jsonld b/data/aresite/aresitebioschemas.jsonld index f7b1da408dade..a7dd2a153feba 100644 --- a/data/aresite/aresitebioschemas.jsonld +++ b/data/aresite/aresitebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "AREsite", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:provider": "bioinf.uni-leipzig.de", "sc:url": "http://rna.tbi.univie.ac.at/AREsite", diff --git a/data/arga/argabioschemas.jsonld b/data/arga/argabioschemas.jsonld index b54319037a672..9cc2cba6c68f5 100644 --- a/data/arga/argabioschemas.jsonld +++ b/data/arga/argabioschemas.jsonld @@ -17,9 +17,9 @@ "sc:license": "Unlicense", "sc:name": "ARGA", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://mem.rcees.ac.cn:8083/" } \ No newline at end of file diff --git a/data/argonnenatlab/argonnenatlabbioschemas.jsonld b/data/argonnenatlab/argonnenatlabbioschemas.jsonld index 82c9b2ac838f4..30045b90c596d 100644 --- a/data/argonnenatlab/argonnenatlabbioschemas.jsonld +++ b/data/argonnenatlab/argonnenatlabbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Several tools including WIT2, EMP, MPW, SENTRA and PatScan; other tools are also available.", "sc:name": "Argonne National Laboratory", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "https://www.anl.gov/" } \ No newline at end of file diff --git a/data/argot2/argot2bioschemas.jsonld b/data/argot2/argot2bioschemas.jsonld index e4ad47e44cf23..c54957307f4db 100644 --- a/data/argot2/argot2bioschemas.jsonld +++ b/data/argot2/argot2bioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0002-0246-3119", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/argot2", "@type": "sc:SoftwareApplication", @@ -17,20 +21,20 @@ }, "sc:additionalType": "Web application", "sc:citation": [ + "pubmed:22536960", { "@id": "https://doi.org/10.1371/journal.pone.0004619" }, "pmcid:PMC2645684", - "pubmed:19247487", - "pubmed:22536960" + "pubmed:19247487" ], "sc:description": "Annotation Retrieval of Gene Ontology Terms", "sc:license": "Other", "sc:name": "Argot2", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:provider": "ELIXIR-ITA-PADOVA", "sc:url": "http://www.medcomp.medicina.unipd.it/Argot2/", @@ -39,10 +43,6 @@ { "@id": "https://doi.org/10.1371/journal.pone.0004619", "@type": "sc:CreativeWork" - }, - { - "@id": "http://orcid.org/0000-0002-0246-3119", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/argyle/argylebioschemas.jsonld b/data/argyle/argylebioschemas.jsonld index fe342b5f229a4..cc6142f568d64 100644 --- a/data/argyle/argylebioschemas.jsonld +++ b/data/argyle/argylebioschemas.jsonld @@ -20,10 +20,10 @@ "sc:additionalType": "Command-line tool", "sc:citation": [ "pubmed:26684930", - "pmcid:PMC4751548", { "@id": "https://doi.org/10.1534/G3.115.023739" - } + }, + "pmcid:PMC4751548" ], "sc:description": "An R Package for Analysis of Illumina Genotyping Arrays.", "sc:featureList": { @@ -31,8 +31,8 @@ }, "sc:name": "argyle", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://github.com/andrewparkermorgan/argyle" } diff --git a/data/aria/ariabioschemas.jsonld b/data/aria/ariabioschemas.jsonld index 279e970ad1062..2140e0471f9f4 100644 --- a/data/aria/ariabioschemas.jsonld +++ b/data/aria/ariabioschemas.jsonld @@ -17,8 +17,8 @@ "sc:license": "MIT", "sc:name": "ARIA", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:provider": "Institut Pasteur", "sc:url": "http://aria.pasteur.fr/", diff --git a/data/arioc/ariocbioschemas.jsonld b/data/arioc/ariocbioschemas.jsonld index 022ed953b1ef8..644915400f5f4 100644 --- a/data/arioc/ariocbioschemas.jsonld +++ b/data/arioc/ariocbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Set of computer programs that carry out the alignment of short DNA sequences to a comparatively large reference sequence or genome.", "sc:name": "Arioc", "sc:operatingSystem": [ - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://github.com/RWilton/Arioc" } \ No newline at end of file diff --git a/data/arion_4_omics/arion_4_omicsbioschemas.jsonld b/data/arion_4_omics/arion_4_omicsbioschemas.jsonld index af20bd250b911..a758ca0e79ebb 100644 --- a/data/arion_4_omics/arion_4_omicsbioschemas.jsonld +++ b/data/arion_4_omics/arion_4_omicsbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "Proprietary", "sc:name": "Arion 4 Omics", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://multicoredynamics.com", diff --git a/data/arkmap/arkmapbioschemas.jsonld b/data/arkmap/arkmapbioschemas.jsonld index a4c4e5f5edafd..ef7f7663e472d 100644 --- a/data/arkmap/arkmapbioschemas.jsonld +++ b/data/arkmap/arkmapbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Desktop application that allows users to draw and align genetic maps.", "sc:name": "ArkMAP", "sc:operatingSystem": [ - "Linux", "Windows", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://www.bioinformatics.roslin.ed.ac.uk/arkmap/" } \ No newline at end of file diff --git a/data/arks/arksbioschemas.jsonld b/data/arks/arksbioschemas.jsonld index e66482239bd7b..2ea42492858df 100644 --- a/data/arks/arksbioschemas.jsonld +++ b/data/arks/arksbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "ARKS", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://github.com/bcgsc/arks" } \ No newline at end of file diff --git a/data/arlequin/arlequinbioschemas.jsonld b/data/arlequin/arlequinbioschemas.jsonld index c35c1d123cdbe..9a2682c8afcf3 100644 --- a/data/arlequin/arlequinbioschemas.jsonld +++ b/data/arlequin/arlequinbioschemas.jsonld @@ -11,16 +11,16 @@ "@id": "https://bio.tools/arlequin", "@type": "sc:SoftwareApplication", "sc:additionalType": [ - "Command-line tool", - "Desktop application" + "Desktop application", + "Command-line tool" ], "sc:description": "Large set of basic methods and statistical tests, to extract information on genetic and demographic features of a collection of population samples. The analyses can perform on the data fall into two main categories: intra-population and inter-population methods.", "sc:license": "Not licensed", "sc:name": "Arlequin", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://cmpg.unibe.ch/software/arlequin35/", "sc:version": "3.5" diff --git a/data/armor/armorbioschemas.jsonld b/data/armor/armorbioschemas.jsonld index eb24495942753..0ec5f81efc732 100644 --- a/data/armor/armorbioschemas.jsonld +++ b/data/armor/armorbioschemas.jsonld @@ -9,27 +9,19 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1534/G3.119.400185", - "@type": "sc:CreativeWork" - }, { "@id": "https://orcid.org/0000-0002-3048-5518", "@type": "schema:Person" }, - { - "@id": "https://orcid.org/0000-0003-3833-2169", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/ARMOR", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ { - "@id": "https://orcid.org/0000-0002-3048-5518" + "@id": "https://orcid.org/0000-0003-3833-2169" }, { - "@id": "https://orcid.org/0000-0003-3833-2169" + "@id": "https://orcid.org/0000-0002-3048-5518" } ], "sc:additionalType": "Command-line tool", @@ -37,29 +29,37 @@ { "@id": "https://doi.org/10.1534/G3.119.400185" }, - "pubmed:31088905", - "pmcid:PMC6643886" + "pmcid:PMC6643886", + "pubmed:31088905" ], "sc:description": "ARMOR (Automated Reproducible MOdular RNA-seq) Workflow for Preprocessing and Differential Analysis of RNA-seq Data.", "sc:featureList": [ { - "@id": "edam:operation_2428" + "@id": "edam:operation_3800" }, { - "@id": "edam:operation_3192" + "@id": "edam:operation_2428" }, { - "@id": "edam:operation_3800" + "@id": "edam:operation_3192" } ], "sc:license": "MIT", "sc:name": "ARMOR", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/csoneson/ARMOR" + }, + { + "@id": "https://doi.org/10.1534/G3.119.400185", + "@type": "sc:CreativeWork" + }, + { + "@id": "https://orcid.org/0000-0003-3833-2169", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/arp_warp/arp_warpbioschemas.jsonld b/data/arp_warp/arp_warpbioschemas.jsonld index ad71ad6967252..db1bf70c7ac83 100644 --- a/data/arp_warp/arp_warpbioschemas.jsonld +++ b/data/arp_warp/arp_warpbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "A program for building macromolecular models from crystallograpgic data. It builds proteins, RNA/DNA, seqondary structure, side chains, loops, solvent and ligands", "sc:name": "ARP wARP", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:provider": "Instruct", "sc:url": "http://www.embl-hamburg.de/ARP/", diff --git a/data/arpeggio/arpeggiobioschemas.jsonld b/data/arpeggio/arpeggiobioschemas.jsonld index e4e18669cbbf4..0d9059d1f4539 100644 --- a/data/arpeggio/arpeggiobioschemas.jsonld +++ b/data/arpeggio/arpeggiobioschemas.jsonld @@ -9,17 +9,21 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1016/J.JMB.2016.12.004", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/arpeggio", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Jubb HC", "sc:additionalType": "Web application", "sc:citation": [ - "pmcid:PMC5282402", - "pubmed:27964945", { "@id": "https://doi.org/10.1016/J.JMB.2016.12.004" - } + }, + "pubmed:27964945", + "pmcid:PMC5282402" ], "sc:description": "A Web Server for Calculating and Visualising Interatomic Interactions in Protein Structures.", "sc:featureList": { @@ -27,15 +31,11 @@ }, "sc:name": "Arpeggio", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://structure.bioc.cam.ac.uk/arpeggio/" - }, - { - "@id": "https://doi.org/10.1016/J.JMB.2016.12.004", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/arrayexpress/arrayexpressbioschemas.jsonld b/data/arrayexpress/arrayexpressbioschemas.jsonld index 9bc121dc55f1d..b45c0f45a5550 100644 --- a/data/arrayexpress/arrayexpressbioschemas.jsonld +++ b/data/arrayexpress/arrayexpressbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Public repository of functional genomics data supporting publications. It includes data generated by sequencing or array-based technologies.", "sc:name": "ArrayExpress", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://www.ebi.ac.uk/arrayexpress" } \ No newline at end of file diff --git a/data/arrayexpresshts/arrayexpresshtsbioschemas.jsonld b/data/arrayexpresshts/arrayexpresshtsbioschemas.jsonld index 699f9d6f03899..f315575bed811 100644 --- a/data/arrayexpresshts/arrayexpresshtsbioschemas.jsonld +++ b/data/arrayexpresshts/arrayexpresshtsbioschemas.jsonld @@ -23,9 +23,9 @@ "sc:license": "Artistic-2.0", "sc:name": "ArrayExpressHTS", "sc:operatingSystem": [ - "Linux", "Windows", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ArrayExpressHTS.html", "sc:version": "1.24.0" diff --git a/data/arraylasso/arraylassobioschemas.jsonld b/data/arraylasso/arraylassobioschemas.jsonld index 0973fc46f7817..f43a0968374dc 100644 --- a/data/arraylasso/arraylassobioschemas.jsonld +++ b/data/arraylasso/arraylassobioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "This tool implements a set of five open-source R functions that allow the user to acquire data from public sources such as GEO, train a set of Lasso models on that data, and directly map one microarray platform to another. It significantly predicts expression levels with higher fidelity than technical replicates of the same RNA pool, demonstrating its utility in the integration of data sets from different platforms.", "sc:name": "aRrayLasso", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "https://github.com/adam-sam-brown/aRrayLasso" } \ No newline at end of file diff --git a/data/arraymaker/arraymakerbioschemas.jsonld b/data/arraymaker/arraymakerbioschemas.jsonld index e29e2d73fc913..773be67130b31 100644 --- a/data/arraymaker/arraymakerbioschemas.jsonld +++ b/data/arraymaker/arraymakerbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Tool that extracts accurate single nucleotide polymorphism genotypes at pre-defined loci from whole genome alignments and presents them in a standard genotyping format compatible with association analysis software and datasets genotyped on commercial array platforms.", "sc:name": "ArrayMaker", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "https://github.com/cw2014/ArrayMaker/" } \ No newline at end of file diff --git a/data/arraymap/arraymapbioschemas.jsonld b/data/arraymap/arraymapbioschemas.jsonld index 9786077f9027f..23968acfcf73d 100644 --- a/data/arraymap/arraymapbioschemas.jsonld +++ b/data/arraymap/arraymapbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "A curated reference database and bioinformatics resource targeting copy number profiling data in human cancer. The arrayMap database provides an entry point for meta-analysis and systems level data integration of high-resolution oncogenomic CNA data.", "sc:name": "arrayMap", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:provider": "SIB Swiss Institute of Bioinformatics", "sc:url": "http://www.arraymap.org" diff --git a/data/arrayminer/arrayminerbioschemas.jsonld b/data/arrayminer/arrayminerbioschemas.jsonld index a274e7b0b1d73..7cfa6597148da 100644 --- a/data/arrayminer/arrayminerbioschemas.jsonld +++ b/data/arrayminer/arrayminerbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "ArrayMiner® is a set of analysis tools using advanced algorithms to reveal the true structure of your gene expression data. Its unique graphical interface gives you an intimate understanding of the analysis and an easy publishing of its results.", "sc:name": "ArrayMiner", "sc:operatingSystem": [ - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://www.optimaldesign.com/ArrayMiner/ArrayMiner.htm", "sc:version": "5.3" diff --git a/data/arraymvout/arraymvoutbioschemas.jsonld b/data/arraymvout/arraymvoutbioschemas.jsonld index 3c6c150756aac..3841449e2f8e2 100644 --- a/data/arraymvout/arraymvoutbioschemas.jsonld +++ b/data/arraymvout/arraymvoutbioschemas.jsonld @@ -12,15 +12,15 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "V. Carey", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "This package supports the application of diverse quality metrics to AffyBatch instances, summarizing these metrics via PCA, and then performing parametric outlier detection on the PCs to identify aberrant arrays with a fixed Type I error rate.", "sc:license": "Artistic-2.0", "sc:name": "arrayMvout", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/arrayMvout.html", diff --git a/data/arraypipe/arraypipebioschemas.jsonld b/data/arraypipe/arraypipebioschemas.jsonld index 2caef09ee51a1..17290daa817b5 100644 --- a/data/arraypipe/arraypipebioschemas.jsonld +++ b/data/arraypipe/arraypipebioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "ArrayPipe allows users to customize a processing pipeline for the analysis of microarray data. Includes methods for quality assessment of slides, data visualization, normalization, and detection of differentially expressed genes. Output consists of reports formatted as standard web pages and tab-delimited lists of calculated values.", "sc:name": "ArrayPipe", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://koch.pathogenomics.ca/cgi-bin/pub/arraypipe.pl" } \ No newline at end of file diff --git a/data/arrayquality/arrayqualitybioschemas.jsonld b/data/arrayquality/arrayqualitybioschemas.jsonld index 97cf000fe9382..a318c34787d2f 100644 --- a/data/arrayquality/arrayqualitybioschemas.jsonld +++ b/data/arrayquality/arrayqualitybioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-3.0", "sc:name": "arrayQuality", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/arrayQuality.html", "sc:version": "1.52.0" diff --git a/data/arraystar/arraystarbioschemas.jsonld b/data/arraystar/arraystarbioschemas.jsonld index 02b0e0371ad44..1973145b4f845 100644 --- a/data/arraystar/arraystarbioschemas.jsonld +++ b/data/arraystar/arraystarbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "An application for gene expression and variant analysis. It enables analyzing a variety of experimental data.", "sc:name": "ArrayStar", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://www.dnastar.com/t-sub-products-genomics-arraystar.aspx" } \ No newline at end of file diff --git a/data/arraytools/arraytoolsbioschemas.jsonld b/data/arraytools/arraytoolsbioschemas.jsonld index ee6161f736972..a1e446d9df75c 100644 --- a/data/arraytools/arraytoolsbioschemas.jsonld +++ b/data/arraytools/arraytoolsbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Arthur Li", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "This package is designed to detect differentially expressed genes for the Affymetrix GeneChips, including both 3' -arrays and gene 1.0-ST arrays. It generates comprehensive analysis reports in HTML format. Hyperlinks on the report page will lead to a series of QC plots, processed data, and differentially expressed gene lists. Differentially expressed genes are reported in tabular format with annotations hyperlinked to online biological databases.", "sc:license": "GPL-2.0", diff --git a/data/arraytrack/arraytrackbioschemas.jsonld b/data/arraytrack/arraytrackbioschemas.jsonld index 2b237cc4de1ae..90fbec9045c74 100644 --- a/data/arraytrack/arraytrackbioschemas.jsonld +++ b/data/arraytrack/arraytrackbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "ArrayTrack", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://www.fda.gov/ScienceResearch/BioinformaticsTools/Arraytrack/" } \ No newline at end of file diff --git a/data/arraytv/arraytvbioschemas.jsonld b/data/arraytv/arraytvbioschemas.jsonld index 25bd17849ec1d..876acb07dfb63 100644 --- a/data/arraytv/arraytvbioschemas.jsonld +++ b/data/arraytv/arraytvbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Eitan Halper-Stromberg", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "Wave correction for genotyping and copy number arrays.", "sc:license": "GPL-2.0", "sc:name": "ArrayTV", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ArrayTV.html", "sc:version": "1.12.0" diff --git a/data/arrayxpath/arrayxpathbioschemas.jsonld b/data/arrayxpath/arrayxpathbioschemas.jsonld index 5db8d518124a6..260bcb812e5db 100644 --- a/data/arrayxpath/arrayxpathbioschemas.jsonld +++ b/data/arrayxpath/arrayxpathbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Web-based service for matching microarray gene-expression profiles with known biological pathways. Input is a clustered gene-expression profile in a tab-delimited text format. Output includes pathway diagrams.", "sc:name": "ArrayXPath", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://www.snubi.org/software/ArrayXPath/" } \ No newline at end of file diff --git a/data/arrest/arrestbioschemas.jsonld b/data/arrest/arrestbioschemas.jsonld index 0811613f8b4ca..6ebc6500efe94 100644 --- a/data/arrest/arrestbioschemas.jsonld +++ b/data/arrest/arrestbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "This tool is designed to enable a deep understanding of antigen receptor sequences with a cascade of algorithms and databases.", "sc:name": "ARResT", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://tools.bat.infspire.org/arrest/assignsubsets/" } \ No newline at end of file diff --git a/data/arrp/arrpbioschemas.jsonld b/data/arrp/arrpbioschemas.jsonld index 354c860123e39..de394278a2014 100644 --- a/data/arrp/arrpbioschemas.jsonld +++ b/data/arrp/arrpbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "This software calculates asymptotic and robust regressions corresponding to the constant and linear asymptotic regression models.", "sc:name": "ARRP", "sc:operatingSystem": [ - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://www.ncbi.nlm.nih.gov/CBBresearch/Spouge/html_ncbi/html/software/program.html?uid=3" } \ No newline at end of file diff --git a/data/arshift/arshiftbioschemas.jsonld b/data/arshift/arshiftbioschemas.jsonld index 43f048bd6c776..d259955f3e0f4 100644 --- a/data/arshift/arshiftbioschemas.jsonld +++ b/data/arshift/arshiftbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Method of calculating side-chain aromatic chemical shifts from protein structures.", "sc:name": "ArShift", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://www-sidechain.ch.cam.ac.uk/ArShift/" } \ No newline at end of file diff --git a/data/artemis/artemisbioschemas.jsonld b/data/artemis/artemisbioschemas.jsonld index 9fc31f96ef276..d63a2f6158355 100644 --- a/data/artemis/artemisbioschemas.jsonld +++ b/data/artemis/artemisbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation.", "sc:name": "Artemis", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "http://www.sanger.ac.uk/science/tools/artemis" } \ No newline at end of file diff --git a/data/arto/artobioschemas.jsonld b/data/arto/artobioschemas.jsonld index 625b245cc05f2..38e96a7d61277 100644 --- a/data/arto/artobioschemas.jsonld +++ b/data/arto/artobioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "The Analysis of Replication Timing and Organization tool uses signal processing methods to fit a constant piece-wise linear curve to the measured raw data. It takes raw time of replication (ToR) measurement signals as input and outputs for each genomic location an estimate of its ToR and an association to CTR (constant ToR region) or TTR (Temporal Transition Region).", "sc:name": "ARTO", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://bioinfo.cs.technion.ac.il/people/zohar/ARTO/" diff --git a/data/artp2/artp2bioschemas.jsonld b/data/artp2/artp2bioschemas.jsonld index 3c05a318676b1..3023e43c6a1a4 100644 --- a/data/artp2/artp2bioschemas.jsonld +++ b/data/artp2/artp2bioschemas.jsonld @@ -11,9 +11,9 @@ "@id": "https://bio.tools/artp2", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Kai Yu", "Division of Cancer Epidemiology and Genetics (DCEG), NCI", - "Han Zhang" + "Han Zhang", + "Kai Yu" ], "sc:additionalType": [ "Library", @@ -23,9 +23,9 @@ "sc:description": "Adaptive Rank Truncated Product is an R package for analyzing pre-defined genetic pathway based on a genetic association study.", "sc:name": "ARTP2", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://dceg.cancer.gov/tools/analysis/artp" } \ No newline at end of file diff --git a/data/arts/artsbioschemas.jsonld b/data/arts/artsbioschemas.jsonld index 085997da99ded..9f61adefe2273 100644 --- a/data/arts/artsbioschemas.jsonld +++ b/data/arts/artsbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "ARTS (Advanced Retrieval Tool for SNPs) can be used to retrieve SNP that are polymorphic between several different mouse strains to aid in the design of genome-wide SNP marker panels.", "sc:name": "ARTS", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://bioinfo3d.cs.tau.ac.il/ARTS/" } \ No newline at end of file diff --git a/data/arts_antibiotics/arts_antibioticsbioschemas.jsonld b/data/arts_antibiotics/arts_antibioticsbioschemas.jsonld index 277c68f3b3aa8..280ec3963f27d 100644 --- a/data/arts_antibiotics/arts_antibioticsbioschemas.jsonld +++ b/data/arts_antibiotics/arts_antibioticsbioschemas.jsonld @@ -9,20 +9,16 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1093/nar/gkx360", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/arts_antibiotics", "@type": "sc:SoftwareApplication", "sc:additionalType": "Web application", "sc:citation": [ - "pmcid:PMC5570205", - "pubmed:28472505", { "@id": "https://doi.org/10.1093/nar/gkx360" - } + }, + "pmcid:PMC5570205", + "pubmed:28472505" ], "sc:description": "Antibiotic Resistant Target Seeker. Specific and efficient genome mining for antibiotics with interesting and novel targets. Automate the screening of large amounts of sequence data and to focus on the most promising strains that produce antibiotics with new modes of action. It integrates target directed genome mining methods, antibiotic gene cluster predictions and ‘essential gene screening’ to provide an interactive page for rapid identification of known and putative targets in BGCs.", "sc:featureList": { @@ -31,10 +27,14 @@ "sc:license": "GPL-3.0", "sc:name": "ARTS", "sc:operatingSystem": [ - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://arts.ziemertlab.com/" + }, + { + "@id": "https://doi.org/10.1093/nar/gkx360", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/as2ts/as2tsbioschemas.jsonld b/data/as2ts/as2tsbioschemas.jsonld index c2bef7c71af2a..e9f1fa5301d4d 100644 --- a/data/as2ts/as2tsbioschemas.jsonld +++ b/data/as2ts/as2tsbioschemas.jsonld @@ -17,9 +17,9 @@ "sc:license": "Unlicense", "sc:name": "AS2TS", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://proteinmodel.org/" } \ No newline at end of file diff --git a/data/asaaap/asaaapbioschemas.jsonld b/data/asaaap/asaaapbioschemas.jsonld index 43d00ab85f2f5..08acac94c6b6d 100644 --- a/data/asaaap/asaaapbioschemas.jsonld +++ b/data/asaaap/asaaapbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0003-4216-2721", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/ASAAAP", "@type": "sc:SoftwareApplication", @@ -29,6 +25,10 @@ "sc:operatingSystem": "Linux", "sc:url": "https://github.com/oschwengers/asap", "sc:version": "1.2.2" + }, + { + "@id": "http://orcid.org/0000-0003-4216-2721", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/asaim/asaimbioschemas.jsonld b/data/asaim/asaimbioschemas.jsonld index 42e85240d9d4e..e9f75d8795bda 100644 --- a/data/asaim/asaimbioschemas.jsonld +++ b/data/asaim/asaimbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "Apache-2.0", "sc:name": "ASaiM", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/ASaiM" } \ No newline at end of file diff --git a/data/asap/asapbioschemas.jsonld b/data/asap/asapbioschemas.jsonld index a7ec1f40e03ea..22b913d661cda 100644 --- a/data/asap/asapbioschemas.jsonld +++ b/data/asap/asapbioschemas.jsonld @@ -12,17 +12,17 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Troels T. Marstrand", "sc:additionalType": [ + "Command-line tool", "Web application", - "Desktop application", - "Command-line tool" + "Desktop application" ], "sc:description": "A framework for promoter analysis based on a fast search engine using enhanced suffix arrays. The framework includes several statistics for calculating over-representation of motifs in a set of promoters from co-regulated genes compared to a background set.", "sc:license": "GPL-3.0", "sc:name": "ASAP", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:provider": "binf.ku.dk", "sc:url": "http://asap.binf.ku.dk/Asap/Home.html", diff --git a/data/asap_pipeline/asap_pipelinebioschemas.jsonld b/data/asap_pipeline/asap_pipelinebioschemas.jsonld index 92f11b086942a..ee1e62b446734 100644 --- a/data/asap_pipeline/asap_pipelinebioschemas.jsonld +++ b/data/asap_pipeline/asap_pipelinebioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Automated Single-cell Analysis Pipeline.", "sc:name": "ASAP", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/DeplanckeLab/ASAP" } \ No newline at end of file diff --git a/data/asatura/asaturabioschemas.jsonld b/data/asatura/asaturabioschemas.jsonld index 0a93b258018f0..9b953e117408c 100644 --- a/data/asatura/asaturabioschemas.jsonld +++ b/data/asatura/asaturabioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Discriminates aa substitutions with high and low probabilities of occurrence.", "sc:name": "ASaturA", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:provider": "ugent.be", "sc:url": "http://bioinformatics.psb.ugent.be/software/details/ASaturA", diff --git a/data/asc/ascbioschemas.jsonld b/data/asc/ascbioschemas.jsonld index 16e01bf16cca9..fb1e956f6f209 100644 --- a/data/asc/ascbioschemas.jsonld +++ b/data/asc/ascbioschemas.jsonld @@ -11,13 +11,13 @@ "@id": "https://bio.tools/asc", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Sonya T Dyhrman", "Melissa Mercier", - "Mak A Saito", + "Sonya T Dyhrman", + "Bethany D Jenkins", + "LeAnn P Whitney", "Tatiana A Rynearson", "Zhijin Wu", - "Bethany D Jenkins", - "LeAnn P Whitney" + "Mak A Saito" ], "sc:additionalType": "Library", "sc:citation": "pubmed:21080965", diff --git a/data/ascend/ascendbioschemas.jsonld b/data/ascend/ascendbioschemas.jsonld index e9eaacf77a06a..0cddc33b15433 100644 --- a/data/ascend/ascendbioschemas.jsonld +++ b/data/ascend/ascendbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "ascend", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/IMB-Computational-Genomics-Lab/ascend" } \ No newline at end of file diff --git a/data/asd/asdbioschemas.jsonld b/data/asd/asdbioschemas.jsonld index 911c116ea996c..444448ffdb70f 100644 --- a/data/asd/asdbioschemas.jsonld +++ b/data/asd/asdbioschemas.jsonld @@ -11,17 +11,17 @@ "@id": "https://bio.tools/asd", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Jian Zhang", - "ASD Support" + "ASD Support", + "Jian Zhang" ], "sc:additionalType": "Database portal", "sc:citation": "pubmed:21051350", "sc:description": "AlloSteric Database (ASD) provides a central resource for the display, search and analysis of structure, function and related annotation for allosteric molecules. Proteins are annotated with a detailed description of allostery, biological process and related diseases, and modulators with binding affinity, physicochemical properties and therapeutic area.", "sc:name": "ASD", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://mdl.shsmu.edu.cn/ASD/" } \ No newline at end of file diff --git a/data/asgsca/asgscabioschemas.jsonld b/data/asgsca/asgscabioschemas.jsonld index cd347fe26d375..467ccca77d543 100644 --- a/data/asgsca/asgscabioschemas.jsonld +++ b/data/asgsca/asgscabioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Hela Romdhani", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "The package provides tools to model and test the association between multiple genotypes and multiple traits, taking into account the prior biological knowledge. Genes, and clinical pathways are incorporated in the model as latent variables. The method is based on Generalized Structured Component Analysis (GSCA).", "sc:license": "GPL-3.0", "sc:name": "ASGSCA", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ASGSCA.html", "sc:version": "1.8.0" diff --git a/data/asics/asicsbioschemas.jsonld b/data/asics/asicsbioschemas.jsonld index 0090dee4f5551..31adad179ff06 100644 --- a/data/asics/asicsbioschemas.jsonld +++ b/data/asics/asicsbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "GPL-2.0", "sc:name": "ASICS", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ASICS.html", "sc:version": "1.0.0" diff --git a/data/asmvar/asmvarbioschemas.jsonld b/data/asmvar/asmvarbioschemas.jsonld index 063584bf204b2..7e5793e71eb0b 100644 --- a/data/asmvar/asmvarbioschemas.jsonld +++ b/data/asmvar/asmvarbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/s13742-015-0103-4", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/asmvar", "@type": "sc:SoftwareApplication", @@ -20,10 +16,10 @@ "sc:additionalType": "Command-line tool", "sc:citation": [ "pubmed:26705468", + "pmcid:PMC4690232", { "@id": "https://doi.org/10.1186/s13742-015-0103-4" - }, - "pmcid:PMC4690232" + } ], "sc:description": "Software for discovery, genotyping and characterization of structural variants.", "sc:featureList": { @@ -35,6 +31,10 @@ "Linux" ], "sc:url": "http://bioinformatics-centre.github.io/AsmVar/" + }, + { + "@id": "https://doi.org/10.1186/s13742-015-0103-4", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/asnr/asnrbioschemas.jsonld b/data/asnr/asnrbioschemas.jsonld index bb328e9e62108..5503c8ce7b1cf 100644 --- a/data/asnr/asnrbioschemas.jsonld +++ b/data/asnr/asnrbioschemas.jsonld @@ -9,18 +9,14 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1038/S41597-019-0056-Z", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/ASNR", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Shweta Bansal", "sc:additionalType": "Database portal", "sc:citation": [ - "pubmed:31036810", "pmcid:PMC6488576", + "pubmed:31036810", { "@id": "https://doi.org/10.1038/S41597-019-0056-Z" } @@ -37,11 +33,15 @@ "sc:license": "GPL-3.0", "sc:name": "ASNR", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:url": "https://bansallab.github.io/asnr/" + }, + { + "@id": "https://doi.org/10.1038/S41597-019-0056-Z", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/aspgd/aspgdbioschemas.jsonld b/data/aspgd/aspgdbioschemas.jsonld index 3a458d344297e..e62fe86229fc4 100644 --- a/data/aspgd/aspgdbioschemas.jsonld +++ b/data/aspgd/aspgdbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AspGD", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://www.aspergillusgenome.org/" } \ No newline at end of file diff --git a/data/aspic-geneid/aspic-geneidbioschemas.jsonld b/data/aspic-geneid/aspic-geneidbioschemas.jsonld index b36da73d3e2ba..22c6e5fe5c8f1 100644 --- a/data/aspic-geneid/aspic-geneidbioschemas.jsonld +++ b/data/aspic-geneid/aspic-geneidbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "A lightweight pipeline for gene prediction and alternative isoforms detection.", "sc:name": "ASPic-GeneID", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:provider": "ELIXIR-ITA-CNR", "sc:url": "http://150.145.82.212/aspic/aspicgeneid.tar.gz", diff --git a/data/aspli/asplibioschemas.jsonld b/data/aspli/asplibioschemas.jsonld index 52389ed14f0bd..0b64bb7d0d6be 100644 --- a/data/aspli/asplibioschemas.jsonld +++ b/data/aspli/asplibioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "GPL-3.0", "sc:name": "ASpli", "sc:operatingSystem": [ - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ASpli.html", "sc:version": "1.0.0" diff --git a/data/aspu/aspubioschemas.jsonld b/data/aspu/aspubioschemas.jsonld index d2fa3f959e693..df1a045201545 100644 --- a/data/aspu/aspubioschemas.jsonld +++ b/data/aspu/aspubioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "R package for adaptive sum of powered score test(ASPU) in genetic association studies.", "sc:name": "aSPU", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "https://cran.r-project.org/web/packages/aSPU/" } \ No newline at end of file diff --git a/data/aspwood/aspwoodbioschemas.jsonld b/data/aspwood/aspwoodbioschemas.jsonld index 3ec7d130c4e1f..656918bc7b385 100644 --- a/data/aspwood/aspwoodbioschemas.jsonld +++ b/data/aspwood/aspwoodbioschemas.jsonld @@ -17,9 +17,9 @@ "sc:license": "Unlicense", "sc:name": "AspWood", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://aspwood.popgenie.org/aspwood-v3.0/" } \ No newline at end of file diff --git a/data/asreml/asremlbioschemas.jsonld b/data/asreml/asremlbioschemas.jsonld index fd89c1826a787..5a7d914b38d7c 100644 --- a/data/asreml/asremlbioschemas.jsonld +++ b/data/asreml/asremlbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:license": "Proprietary", "sc:name": "ASReml", "sc:operatingSystem": [ - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://asreml.org/" } \ No newline at end of file diff --git a/data/assam/assambioschemas.jsonld b/data/assam/assambioschemas.jsonld index 667b61842a281..0a419424cf36c 100644 --- a/data/assam/assambioschemas.jsonld +++ b/data/assam/assambioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "ASSAM tool searches for patterns of amino acid side chains in 3D space within PDB structures. Input must be a 3D amino acid pattern, which will be used in based on distances between the amino acid side chains.", "sc:name": "ASSAM", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://mfrlab.org/grafss/assam" } \ No newline at end of file diff --git a/data/assaycorrector/assaycorrectorbioschemas.jsonld b/data/assaycorrector/assaycorrectorbioschemas.jsonld index 687691dfe7633..ba1af18e94c8e 100644 --- a/data/assaycorrector/assaycorrectorbioschemas.jsonld +++ b/data/assaycorrector/assaycorrectorbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Detecting and removing multiplicative spatial bias in high-throughput screening technologies.", "sc:name": "AssayCorrector", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "https://cran.r-project.org/web/packages/AssayCorrector/index.html" } \ No newline at end of file diff --git a/data/assayr/assayrbioschemas.jsonld b/data/assayr/assayrbioschemas.jsonld index 71bff4245ba63..a3728922f4911 100644 --- a/data/assayr/assayrbioschemas.jsonld +++ b/data/assayr/assayrbioschemas.jsonld @@ -9,17 +9,21 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1021/acs.analchem.7b02401", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/assayr", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Jimi Wills", "sc:additionalType": "Command-line tool", "sc:citation": [ + "pubmed:28850215", { "@id": "https://doi.org/10.1021/acs.analchem.7b02401" }, - "pmcid:PMC5628912", - "pubmed:28850215" + "pmcid:PMC5628912" ], "sc:description": "Simple Mass Spectrometry Software Tool for Targeted Metabolic and Stable Isotope Tracer Analyses.", "sc:featureList": { @@ -31,10 +35,6 @@ "Linux" ], "sc:url": "https://gitlab.com/jimiwills/assay.R/" - }, - { - "@id": "https://doi.org/10.1021/acs.analchem.7b02401", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/assembly_converter/assembly_converterbioschemas.jsonld b/data/assembly_converter/assembly_converterbioschemas.jsonld index 3ac9be8b41060..9e2189e9969e4 100644 --- a/data/assembly_converter/assembly_converterbioschemas.jsonld +++ b/data/assembly_converter/assembly_converterbioschemas.jsonld @@ -15,13 +15,13 @@ "sc:description": "Map your data to the current assembly.", "sc:name": "Assembly converter", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:provider": [ - "Sanger Institute", - "EMBL-EBI" + "EMBL-EBI", + "Sanger Institute" ], "sc:url": "http://www.ensembl.org/Homo_sapiens/UserData/SelectFeatures", "sc:version": "1" diff --git a/data/assembly_pcr_oligo_maker/assembly_pcr_oligo_makerbioschemas.jsonld b/data/assembly_pcr_oligo_maker/assembly_pcr_oligo_makerbioschemas.jsonld index 2041c7dd990cd..703fee8993594 100644 --- a/data/assembly_pcr_oligo_maker/assembly_pcr_oligo_makerbioschemas.jsonld +++ b/data/assembly_pcr_oligo_maker/assembly_pcr_oligo_makerbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Assembly PCR Oligo Maker is a tool for designing oligodeoxynucleotides for the PCR based construction of long DNA molecules.", "sc:name": "Assembly PCR Oligo Maker", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://www.yorku.ca/pjohnson/AssemblyPCRoligomaker.html" } \ No newline at end of file diff --git a/data/assemblyget/assemblygetbioschemas.jsonld b/data/assemblyget/assemblygetbioschemas.jsonld index 57b4af3c414b0..8276d8d335d00 100644 --- a/data/assemblyget/assemblygetbioschemas.jsonld +++ b/data/assemblyget/assemblygetbioschemas.jsonld @@ -12,9 +12,9 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "UK MRC", "Wellcome Trust", "EMBOSS Contributors", + "UK MRC", "UK BBSRC" ], "sc:description": "An Emboss tool that searches for a sequence assembly and returns the data in one of the EMBOSS assembly formats.", diff --git a/data/assemblymanager/assemblymanagerbioschemas.jsonld b/data/assemblymanager/assemblymanagerbioschemas.jsonld index bb1783c24baa0..fb4d377696830 100644 --- a/data/assemblymanager/assemblymanagerbioschemas.jsonld +++ b/data/assemblymanager/assemblymanagerbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "assemblyManager", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://andersonlab.qb3.berkeley.edu/#/software" } \ No newline at end of file diff --git a/data/assemblytics/assemblyticsbioschemas.jsonld b/data/assemblytics/assemblyticsbioschemas.jsonld index b8d59c3198a6e..a2d94eaf6db98 100644 --- a/data/assemblytics/assemblyticsbioschemas.jsonld +++ b/data/assemblytics/assemblyticsbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "Assemblytics", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://assemblytics.com/" } \ No newline at end of file diff --git a/data/asseq/asseqbioschemas.jsonld b/data/asseq/asseqbioschemas.jsonld index 30e33cbd8e4c7..6141561a89522 100644 --- a/data/asseq/asseqbioschemas.jsonld +++ b/data/asseq/asseqbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Software of allele specific study of next generation sequencing data, with emphasis on RNA-seq and ChIP-seq data.", "sc:name": "asSeq", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://www.bios.unc.edu/~weisun/software/asSeq.htm" diff --git a/data/asset/assetbioschemas.jsonld b/data/asset/assetbioschemas.jsonld index bb1dcaf4589b9..3f3f27943321f 100644 --- a/data/asset/assetbioschemas.jsonld +++ b/data/asset/assetbioschemas.jsonld @@ -20,8 +20,8 @@ "sc:name": "ASSET", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ASSET.html", "sc:version": "1.12.0" diff --git a/data/assign/assignbioschemas.jsonld b/data/assign/assignbioschemas.jsonld index 9f9af5a02baf9..d71abb9e170a4 100644 --- a/data/assign/assignbioschemas.jsonld +++ b/data/assign/assignbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Ying Shen", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "Tool to evaluate the pathway deregulation/activation status in patient samples. It employs a Bayesian factor analysis approach to adapt predetermined pathway signatures derived from knowledge-based literatures or from perturbation experiments to the cell-/tissue-specific pathway signatures. The deregulation/activation level of each context-specific pathway is quantified to a score, which represents the extent to which a patient sample encompasses the pathway deregulation/activation signature.", "sc:license": "MIT", "sc:name": "ASSIGN", "sc:operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ASSIGN.html", "sc:version": "1.10.0" diff --git a/data/assist/assistbioschemas.jsonld b/data/assist/assistbioschemas.jsonld index 083768b92a780..d32dc6cf3de53 100644 --- a/data/assist/assistbioschemas.jsonld +++ b/data/assist/assistbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:funder": "http://www.fruitbreedomics.com/", "sc:name": "ASSIST", "sc:operatingSystem": [ - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:provider": "ELIXIR-ITA-MACH", "sc:url": "http://compbiotoolbox.fmach.it/assist/", diff --git a/data/assist_active/assist_activebioschemas.jsonld b/data/assist_active/assist_activebioschemas.jsonld index 8f1908fe8714e..acea46eff02ee 100644 --- a/data/assist_active/assist_activebioschemas.jsonld +++ b/data/assist_active/assist_activebioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "ASSIST is an application for the detection of catalytic sites in unknown function proteins.", "sc:name": "ASSIST v1- Active Site Similarity Search Tool", "sc:operatingSystem": [ - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://www.computationalbiology.it/software.html" } \ No newline at end of file diff --git a/data/association_viewer/association_viewerbioschemas.jsonld b/data/association_viewer/association_viewerbioschemas.jsonld index a35c25d95c194..c6adaca9f291b 100644 --- a/data/association_viewer/association_viewerbioschemas.jsonld +++ b/data/association_viewer/association_viewerbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "AssociationViewer is a Java application used to display SNPs in a genetic context. Supplementary data (such as genes or LD plots) is downloaded from various public data sources on the fly and saved locally in a cache. Custom data can be added as supplementary tracks.", "sc:name": "Association Viewer", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://associationviewer.vital-it.ch/" } \ No newline at end of file diff --git a/data/astalavista/astalavistabioschemas.jsonld b/data/astalavista/astalavistabioschemas.jsonld index dda214e4a99d8..df23d6229f569 100644 --- a/data/astalavista/astalavistabioschemas.jsonld +++ b/data/astalavista/astalavistabioschemas.jsonld @@ -17,9 +17,9 @@ "sc:license": "BSD-3-Clause", "sc:name": "AStalavista", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:provider": [ "crg.eu", diff --git a/data/astd/astdbioschemas.jsonld b/data/astd/astdbioschemas.jsonld index 798c005671d1e..766a5cc73b259 100644 --- a/data/astd/astdbioschemas.jsonld +++ b/data/astd/astdbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "AltSplice and AltExtron provide information on alternative intron/exons, alternative splice events, and isoform splice patterns. AEdb contains: AEdb-Sequence (sequence and properties of alternatively splice exons), AEdb-Function (data on functional aspects of alternative splicing), AEdb-motif (data and sequence of known splice regulatory motifs), and AEdb-minigene (a collection of known minigene constructs for alternative splice events).", "sc:name": "ASTD", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://www.ebi.ac.uk/astd/" } \ No newline at end of file diff --git a/data/astral/astralbioschemas.jsonld b/data/astral/astralbioschemas.jsonld index 15649c63db306..32a2e12bca350 100644 --- a/data/astral/astralbioschemas.jsonld +++ b/data/astral/astralbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Java program for estimating a species tree given a set of unrooted gene trees.", "sc:name": "ASTRAL", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "https://github.com/smirarab/ASTRAL" diff --git a/data/astrocyte_quantification_and_analysis_aqua/astrocyte_quantification_and_analysis_aquabioschemas.jsonld b/data/astrocyte_quantification_and_analysis_aqua/astrocyte_quantification_and_analysis_aquabioschemas.jsonld index da824466a4d88..041e7424db0d6 100644 --- a/data/astrocyte_quantification_and_analysis_aqua/astrocyte_quantification_and_analysis_aquabioschemas.jsonld +++ b/data/astrocyte_quantification_and_analysis_aqua/astrocyte_quantification_and_analysis_aquabioschemas.jsonld @@ -19,8 +19,8 @@ "sc:name": "Astrocyte Quantification and Analysis (AQuA)", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "https://github.com/yu-lab-vt/aqua" } \ No newline at end of file diff --git a/data/atac/atacbioschemas.jsonld b/data/atac/atacbioschemas.jsonld index 105800700dd6f..5652216bced3d 100644 --- a/data/atac/atacbioschemas.jsonld +++ b/data/atac/atacbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/atac", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Brian Walenz", - "Liliana Florea" + "Liliana Florea", + "Brian Walenz" ], "sc:additionalType": "Command-line tool", "sc:citation": "pubmed:14769938", diff --git a/data/atacseqqc/atacseqqcbioschemas.jsonld b/data/atacseqqc/atacseqqcbioschemas.jsonld index c81d8960250fb..df04c4dbbb286 100644 --- a/data/atacseqqc/atacseqqcbioschemas.jsonld +++ b/data/atacseqqc/atacseqqcbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "ATACseqQC", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/ATACseqQC.html", "sc:version": "1.4.1" diff --git a/data/ataris/atarisbioschemas.jsonld b/data/ataris/atarisbioschemas.jsonld index dec35f8b12f39..aa08ddfea4692 100644 --- a/data/ataris/atarisbioschemas.jsonld +++ b/data/ataris/atarisbioschemas.jsonld @@ -20,10 +20,10 @@ "sc:additionalType": "Plug-in", "sc:citation": [ "pubmed:23269662", + "pmcid:PMC3613583", { "@id": "https://doi.org/10.1101/GR.143586.112" - }, - "pmcid:PMC3613583" + } ], "sc:description": "Computational quantification of gene suppression phenotypes from multisample RNAi screens.", "sc:featureList": { @@ -32,8 +32,8 @@ "sc:name": "ATARiS", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "https://www.broadinstitute.org/ataris-computational-quantification-gene-suppression-phenotypes-multisample-rnai-screens" } diff --git a/data/atcc/atccbioschemas.jsonld b/data/atcc/atccbioschemas.jsonld index fee1f234e9d9b..f9329d2f571a1 100644 --- a/data/atcc/atccbioschemas.jsonld +++ b/data/atcc/atccbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Global biological materials resource and standards organization whose mission focuses on the acquisition, authentication, production, preservation, development, and distribution of standard reference microorganisms, cell lines, and other materials.", "sc:name": "American Type Culture Collection (ATCC)", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:provider": "ATCC", diff --git a/data/atcoecis/atcoecisbioschemas.jsonld b/data/atcoecis/atcoecisbioschemas.jsonld index a66d609adc402..59c1b5963df97 100644 --- a/data/atcoecis/atcoecisbioschemas.jsonld +++ b/data/atcoecis/atcoecisbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "ATCOECIS", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:provider": "PSB", "sc:url": "http://bioinformatics.psb.ugent.be/ATCOECIS/", diff --git a/data/atfusiondb/atfusiondbbioschemas.jsonld b/data/atfusiondb/atfusiondbbioschemas.jsonld index 179d17388d10d..0cfc321f3ee89 100644 --- a/data/atfusiondb/atfusiondbbioschemas.jsonld +++ b/data/atfusiondb/atfusiondbbioschemas.jsonld @@ -25,8 +25,8 @@ { "@id": "https://doi.org/10.1093/database/bay135" }, - "pmcid:PMC6323297", - "pubmed:30624648" + "pubmed:30624648", + "pmcid:PMC6323297" ], "sc:description": "Database of fusion transcripts in Arabidopsis thaliana.", "sc:featureList": [ @@ -34,10 +34,10 @@ "@id": "edam:operation_2495" }, { - "@id": "edam:operation_0224" + "@id": "edam:operation_0495" }, { - "@id": "edam:operation_0495" + "@id": "edam:operation_0224" } ], "sc:name": "AtFusionDB", diff --git a/data/atlasrdf/atlasrdfbioschemas.jsonld b/data/atlasrdf/atlasrdfbioschemas.jsonld index cf0fc5446b5b9..10bbf8eb7fcc3 100644 --- a/data/atlasrdf/atlasrdfbioschemas.jsonld +++ b/data/atlasrdf/atlasrdfbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "Apache-2.0", "sc:name": "AtlasRDF", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AtlasRDF.html", "sc:version": "1.10.0" diff --git a/data/atomap/atomapbioschemas.jsonld b/data/atomap/atomapbioschemas.jsonld index 2db3558bb1551..960e8084a3c8b 100644 --- a/data/atomap/atomapbioschemas.jsonld +++ b/data/atomap/atomapbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0001-7981-5293", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/atomap", "@type": "sc:SoftwareApplication", @@ -31,16 +35,12 @@ "sc:name": "Atomap", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://atomap.org/", "sc:version": "0.1.2" }, - { - "@id": "http://orcid.org/0000-0001-7981-5293", - "@type": "schema:Person" - }, { "@id": "https://doi.org/10.1186/s40679-017-0042-5", "@type": "sc:CreativeWork" diff --git a/data/atomicchargecalculator/atomicchargecalculatorbioschemas.jsonld b/data/atomicchargecalculator/atomicchargecalculatorbioschemas.jsonld index 6caec7e8febf3..675794c940c0a 100644 --- a/data/atomicchargecalculator/atomicchargecalculatorbioschemas.jsonld +++ b/data/atomicchargecalculator/atomicchargecalculatorbioschemas.jsonld @@ -11,21 +11,21 @@ "@id": "https://bio.tools/atomicchargecalculator", "@type": "sc:SoftwareApplication", "sc:additionalType": [ - "Web application", - "Command-line tool" + "Command-line tool", + "Web application" ], "sc:author": "David Sehnal", "sc:contributor": [ - "Lukáš Pravda", "Stanislav Geidl", - "Crina Maria Ionescu" + "Crina Maria Ionescu", + "Lukáš Pravda" ], "sc:description": "A web application for the calculation and analysis of atomic charges in both large biomolecular complexes and small drug-like molecules.", "sc:name": "AtomicChargeCalculator", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:provider": "Masaryk University, Brno, Czech Republic", "sc:url": "http://ncbr.muni.cz/ACC", diff --git a/data/atpid/atpidbioschemas.jsonld b/data/atpid/atpidbioschemas.jsonld index 13966d009e02a..fc582d9fc67b5 100644 --- a/data/atpid/atpidbioschemas.jsonld +++ b/data/atpid/atpidbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Centralized platform to depict and integrate the information pertaining to protein-protein interaction networks, domain architecture, ortholog information and GO annotation in the Arabidopsis thaliana proteome.", "sc:name": "AtPID", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://www.megabionet.org/atpid/" } \ No newline at end of file diff --git a/data/atram/atrambioschemas.jsonld b/data/atram/atrambioschemas.jsonld index 17d8a1b0467c5..449c0765cf979 100644 --- a/data/atram/atrambioschemas.jsonld +++ b/data/atram/atrambioschemas.jsonld @@ -9,24 +9,16 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0002-1497-1284", - "@type": "schema:Person" - }, - { - "@id": "https://doi.org/10.1186/S12859-015-0515-2", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/atram", "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:citation": [ - "pmcid:PMC4380108", "pubmed:25887972", { "@id": "https://doi.org/10.1186/S12859-015-0515-2" - } + }, + "pmcid:PMC4380108" ], "sc:contributor": { "@id": "http://orcid.org/0000-0002-1497-1284" @@ -42,6 +34,14 @@ ], "sc:url": "https://github.com/juliema/aTRAM", "sc:version": "1.04" + }, + { + "@id": "http://orcid.org/0000-0002-1497-1284", + "@type": "schema:Person" + }, + { + "@id": "https://doi.org/10.1186/S12859-015-0515-2", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/atrhunter/atrhunterbioschemas.jsonld b/data/atrhunter/atrhunterbioschemas.jsonld index d55b01d1ed9c0..0bdcfd032504d 100644 --- a/data/atrhunter/atrhunterbioschemas.jsonld +++ b/data/atrhunter/atrhunterbioschemas.jsonld @@ -11,16 +11,16 @@ "@id": "https://bio.tools/atrhunter", "@type": "sc:SoftwareApplication", "sc:additionalType": [ - "Web service", - "Command-line tool" + "Command-line tool", + "Web service" ], "sc:citation": "pubmed:16201913", "sc:description": "Software that finds and displays approximate tandem repeats (ATR) in DNA sequences. An approximate tandem repeat (ATR) in a genomic sequence is a string of nucleotides repeated consecutively at least twice with some small differences between the repeated copies.", "sc:name": "ATRHunter", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://www.cs.technion.ac.il/labs/cbl/atrhunter/ATRinformation.htm" } \ No newline at end of file diff --git a/data/atsnp/atsnpbioschemas.jsonld b/data/atsnp/atsnpbioschemas.jsonld index 93a5efc807eab..f94543717009d 100644 --- a/data/atsnp/atsnpbioschemas.jsonld +++ b/data/atsnp/atsnpbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "atSNP", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/chandlerzuo/atsnp" } \ No newline at end of file diff --git a/data/atsubp/atsubpbioschemas.jsonld b/data/atsubp/atsubpbioschemas.jsonld index 4acb53226f138..7c6acb5c0103d 100644 --- a/data/atsubp/atsubpbioschemas.jsonld +++ b/data/atsubp/atsubpbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AtSubP", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bioinfo3.noble.org/AtSubP/" } \ No newline at end of file diff --git a/data/attract/attractbioschemas.jsonld b/data/attract/attractbioschemas.jsonld index 9b59bb1f2a0fb..18b83ac35cf8a 100644 --- a/data/attract/attractbioschemas.jsonld +++ b/data/attract/attractbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Samuel Zimmerman", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "This package contains the functions to find the gene expression modules that represent the drivers of Kauffman's attractor landscape. The modules are the core attractor pathways that discriminate between different cell types of groups of interest. Each pathway has a set of synexpression groups, which show transcriptionally-coordinated changes in gene expression.", "sc:license": "GPL-2.0", "sc:name": "attract", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/attract.html", "sc:version": "1.26.0" diff --git a/data/aucell/aucellbioschemas.jsonld b/data/aucell/aucellbioschemas.jsonld index 65b03d3b888cc..96f2dee254087 100644 --- a/data/aucell/aucellbioschemas.jsonld +++ b/data/aucell/aucellbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AUCell", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/AUCell.html", "sc:version": "1.2.4" diff --git a/data/aurea/aureabioschemas.jsonld b/data/aurea/aureabioschemas.jsonld index 7e289901e1bf9..6417b70619d48 100644 --- a/data/aurea/aureabioschemas.jsonld +++ b/data/aurea/aureabioschemas.jsonld @@ -16,24 +16,24 @@ "sc:additionalType": "Library", "sc:citation": [ "pubmed:23496976", - "pmcid:PMC3599560", { "@id": "https://doi.org/10.1186/1471-2105-14-78" - } + }, + "pmcid:PMC3599560" ], "sc:description": "Open-source software system for accurate and user-friendly identification of relative expression molecular signatures.", "sc:featureList": [ { - "@id": "edam:operation_0239" + "@id": "edam:operation_2495" }, { - "@id": "edam:operation_2495" + "@id": "edam:operation_0239" } ], "sc:name": "AUREA", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "https://hood-price.systemsbiology.org/research/aurea/" diff --git a/data/aureme/auremebioschemas.jsonld b/data/aureme/auremebioschemas.jsonld index cfad28f7acf29..33d9942bea389 100644 --- a/data/aureme/auremebioschemas.jsonld +++ b/data/aureme/auremebioschemas.jsonld @@ -11,9 +11,9 @@ "@id": "https://bio.tools/aureme", "@type": "sc:SoftwareApplication", "sc:additionalType": [ + "Command-line tool", "Workbench", - "Workflow", - "Command-line tool" + "Workflow" ], "sc:description": "A unified workspace built around a Python package PADMet (Python library for hAndling metaData of METabolism), to house the reconstruction of genome-scale metabolic models.", "sc:license": "GPL-3.0", diff --git a/data/aureolib/aureolibbioschemas.jsonld b/data/aureolib/aureolibbioschemas.jsonld index 69077b5160ad2..42fcce9a1ef46 100644 --- a/data/aureolib/aureolibbioschemas.jsonld +++ b/data/aureolib/aureolibbioschemas.jsonld @@ -9,16 +9,20 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1371/journal.pone.0070669", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/aureolib", "@type": "sc:SoftwareApplication", "sc:additionalType": "Database portal", "sc:citation": [ + "pmcid:PMC3742771", { "@id": "https://doi.org/10.1371/journal.pone.0070669" }, - "pubmed:23967085", - "pmcid:PMC3742771" + "pubmed:23967085" ], "sc:description": "Proteomic signature library of Staphylococcus aureus Pathophysiology for inter-experimental expression data analyses.", "sc:featureList": { @@ -27,10 +31,6 @@ "sc:name": "Aureolib", "sc:url": "http://www.aureolib.de/index.php", "sc:version": "1.2" - }, - { - "@id": "https://doi.org/10.1371/journal.pone.0070669", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/autalasso/autalassobioschemas.jsonld b/data/autalasso/autalassobioschemas.jsonld index bf1a26f091348..182f5a8aaeb35 100644 --- a/data/autalasso/autalassobioschemas.jsonld +++ b/data/autalasso/autalassobioschemas.jsonld @@ -16,27 +16,27 @@ "sc:additionalType": "Command-line tool", "sc:citation": [ "pubmed:30940067", + "pmcid:PMC6444607", { "@id": "https://doi.org/10.1186/s12859-019-2743-3" - }, - "pmcid:PMC6444607" + } ], "sc:description": "Automatic adaptive LASSO for genome-wide prediction.", "sc:featureList": [ { - "@id": "edam:operation_3557" + "@id": "edam:operation_3659" }, { - "@id": "edam:operation_3196" + "@id": "edam:operation_3557" }, { - "@id": "edam:operation_3659" + "@id": "edam:operation_3196" } ], "sc:name": "AUTALASSO", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://github.com/patwa67/AUTALASSO" }, diff --git a/data/autismkb/autismkbbioschemas.jsonld b/data/autismkb/autismkbbioschemas.jsonld index 320bc20e71bd9..0a67459b23f3c 100644 --- a/data/autismkb/autismkbbioschemas.jsonld +++ b/data/autismkb/autismkbbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "An evidence-based knowledgebase of autism genetics.", "sc:name": "AutismKB", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://autismkb.cbi.pku.edu.cn/" } \ No newline at end of file diff --git a/data/auto-rickshaw/auto-rickshawbioschemas.jsonld b/data/auto-rickshaw/auto-rickshawbioschemas.jsonld index 220e40f4c4f18..45c05c563933a 100644 --- a/data/auto-rickshaw/auto-rickshawbioschemas.jsonld +++ b/data/auto-rickshaw/auto-rickshawbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0002-6058-7793", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/auto-rickshaw", "@type": "sc:SoftwareApplication", @@ -22,8 +18,8 @@ "sc:additionalType": "Web service", "sc:citation": [ "pmcid:PMC2756167", - "pubmed:15805600", "pubmed:19770506", + "pubmed:15805600", { "@id": "https://doi.org/10.1107/S0907444909029643" } @@ -40,6 +36,10 @@ { "@id": "https://doi.org/10.1107/S0907444909029643", "@type": "sc:CreativeWork" + }, + { + "@id": "http://orcid.org/0000-0002-6058-7793", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/autoassemblyd/autoassemblydbioschemas.jsonld b/data/autoassemblyd/autoassemblydbioschemas.jsonld index c49d042d3ef66..b0b28090e503b 100644 --- a/data/autoassemblyd/autoassemblydbioschemas.jsonld +++ b/data/autoassemblyd/autoassemblydbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "AutoAssemblyD", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://sourceforge.net/projects/autoassemblyd/" } \ No newline at end of file diff --git a/data/autoassign/autoassignbioschemas.jsonld b/data/autoassign/autoassignbioschemas.jsonld index 9b29d4d2b1048..4bee1b35fe31d 100644 --- a/data/autoassign/autoassignbioschemas.jsonld +++ b/data/autoassign/autoassignbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Using this software, complete backbone resonance assignments are now routinely made within hours of completing the final data acquisition.", "sc:name": "AUTOASSIGN", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:provider": "Instruct", "sc:url": "http://www-nmr.cabm.rutgers.edu/NMRsoftware/nmr_software.html", diff --git a/data/autoclass_ijm/autoclass_ijmbioschemas.jsonld b/data/autoclass_ijm/autoclass_ijmbioschemas.jsonld index f9bfbb3c9fb45..c691d72ad090b 100644 --- a/data/autoclass_ijm/autoclass_ijmbioschemas.jsonld +++ b/data/autoclass_ijm/autoclass_ijmbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "AutoClass IJM", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://www.ijm.fr/en/ijm/resources/bioinformatics/" } \ No newline at end of file diff --git a/data/autocsa/autocsabioschemas.jsonld b/data/autocsa/autocsabioschemas.jsonld index ce11e550862a6..fc1261579b4ff 100644 --- a/data/autocsa/autocsabioschemas.jsonld +++ b/data/autocsa/autocsabioschemas.jsonld @@ -15,8 +15,8 @@ "sc:name": "AutoCSA", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://www.sanger.ac.uk/science/tools/autocsa", "sc:version": "1.0" diff --git a/data/autodesk_molecule_viewer/autodesk_molecule_viewerbioschemas.jsonld b/data/autodesk_molecule_viewer/autodesk_molecule_viewerbioschemas.jsonld index 196b68807de72..63ee6074941de 100644 --- a/data/autodesk_molecule_viewer/autodesk_molecule_viewerbioschemas.jsonld +++ b/data/autodesk_molecule_viewer/autodesk_molecule_viewerbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:license": "Freeware", "sc:name": "Autodesk Molecule Viewer", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "https://moleculeviewer.lifesciences.autodesk.com/" diff --git a/data/autodock_vina/autodock_vinabioschemas.jsonld b/data/autodock_vina/autodock_vinabioschemas.jsonld index fdeaf7f4f38bb..659f16c49d4f7 100644 --- a/data/autodock_vina/autodock_vinabioschemas.jsonld +++ b/data/autodock_vina/autodock_vinabioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "AutoDock Vina is a new open-source program for drug discovery, molecular docking and virtual screening, offering multi-core capability, high performance and enhanced accuracy and ease of use.", "sc:name": "AutoDock Vina", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://vina.scripps.edu/", "sc:version": "1.1.2" diff --git a/data/autohd/autohdbioschemas.jsonld b/data/autohd/autohdbioschemas.jsonld index 7b9585e4ba83a..4a15cacd590df 100644 --- a/data/autohd/autohdbioschemas.jsonld +++ b/data/autohd/autohdbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "GPL-3.0", "sc:name": "AUTOHD", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "http://www.ms-utils.org/autohd.html" } \ No newline at end of file diff --git a/data/autoosc/autooscbioschemas.jsonld b/data/autoosc/autooscbioschemas.jsonld index c0f564c52a333..61d2968e5c5d7 100644 --- a/data/autoosc/autooscbioschemas.jsonld +++ b/data/autoosc/autooscbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Mathematica package for analyzing time-series of oscillatory signals, particularly those originating from biological/chemical systems.", "sc:name": "Autoosc", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "http://babylone.ulb.ac.be/autoosc/" } \ No newline at end of file diff --git a/data/autopad/autopadbioschemas.jsonld b/data/autopad/autopadbioschemas.jsonld index 033a45b713036..fb095dee87aa9 100644 --- a/data/autopad/autopadbioschemas.jsonld +++ b/data/autopad/autopadbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "The paper-based microfluidic device design software.", "sc:name": "AutoPAD", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "https://github.com/MaceLab/AutoPAD" } \ No newline at end of file diff --git a/data/autoroot/autorootbioschemas.jsonld b/data/autoroot/autorootbioschemas.jsonld index 2be58cce8425b..1f2a13da950fb 100644 --- a/data/autoroot/autorootbioschemas.jsonld +++ b/data/autoroot/autorootbioschemas.jsonld @@ -9,21 +9,17 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/s13007-017-0161-y", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/autoroot", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Michael P. Pound", "sc:additionalType": "Desktop application", "sc:citation": [ + "pubmed:28286542", "pmcid:PMC5341458", { "@id": "https://doi.org/10.1186/s13007-017-0161-y" - }, - "pubmed:28286542" + } ], "sc:description": "Open-source software employing a novel image analysis approach to support fully-automated plant phenotyping.", "sc:featureList": { @@ -33,6 +29,10 @@ "sc:name": "AutoRoot", "sc:operatingSystem": "Windows", "sc:url": "https://zenodo.org/record/60433#.W1NXONj7TOQ" + }, + { + "@id": "https://doi.org/10.1186/s13007-017-0161-y", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/autoseqman/autoseqmanbioschemas.jsonld b/data/autoseqman/autoseqmanbioschemas.jsonld index 974df3cf34dcc..e6d5e6537167c 100644 --- a/data/autoseqman/autoseqmanbioschemas.jsonld +++ b/data/autoseqman/autoseqmanbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.24272/j.issn.2095-8137.2018.027", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/autoseqman", "@type": "sc:SoftwareApplication", @@ -16,10 +20,10 @@ "sc:additionalType": "Desktop application", "sc:citation": [ "pmcid:PMC5885390", - "pubmed:29515094", { "@id": "https://doi.org/10.24272/j.issn.2095-8137.2018.027" - } + }, + "pubmed:29515094" ], "sc:description": "Batch Assembly of Contigs for Sanger Sequences.", "sc:featureList": { @@ -28,10 +32,6 @@ "sc:name": "AutoSeqMan", "sc:operatingSystem": "Windows", "sc:url": "https://github.com/Sun-Yanbo/autoSeqMan" - }, - { - "@id": "https://doi.org/10.24272/j.issn.2095-8137.2018.027", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/autosequin/autosequinbioschemas.jsonld b/data/autosequin/autosequinbioschemas.jsonld index 33337a8f03f99..903a14516ce19 100644 --- a/data/autosequin/autosequinbioschemas.jsonld +++ b/data/autosequin/autosequinbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "AutoSequin is designed to speed up the process of submitting HIV sequences to GenBank via NCBI’s Sequin program. It is ideal for the batch sequence submission. It makes a special formated table required for running NCBI’s tbl2asn program to generate .sqn file for submission to GenBank.", "sc:name": "AutoSequin", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://indra.mullins.microbiol.washington.edu/perlscript/docs/AutoSequin.html" } \ No newline at end of file diff --git a/data/autosite/autositebioschemas.jsonld b/data/autosite/autositebioschemas.jsonld index dae2367e5f840..fcb57bd81bc53 100644 --- a/data/autosite/autositebioschemas.jsonld +++ b/data/autosite/autositebioschemas.jsonld @@ -15,11 +15,11 @@ "biotools:primaryContact": "Michel F. Sanner", "sc:additionalType": "Command-line tool", "sc:citation": [ - "pmcid:PMC5048065", - "pubmed:27354702", { "@id": "https://doi.org/10.1093/BIOINFORMATICS/BTW367" - } + }, + "pmcid:PMC5048065", + "pubmed:27354702" ], "sc:description": "Computational method for identifying and characterizing small molecules binding sites for receptors of known three-dimensional structure. Binding sites are identified using energetic aspects to select high affinity points in space around the receptor, and a clustering technique for segregating these points into clusters called fills and corresponding to potential binding pockets.", "sc:featureList": { @@ -27,8 +27,8 @@ }, "sc:name": "AutoSite", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://adfr.scripps.edu/AutoDockFR/autosite.html" }, diff --git a/data/autosnpdb/autosnpdbbioschemas.jsonld b/data/autosnpdb/autosnpdbbioschemas.jsonld index 142ca0be0dc4d..4d01585184806 100644 --- a/data/autosnpdb/autosnpdbbioschemas.jsonld +++ b/data/autosnpdb/autosnpdbbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "AutoSNPdb", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://autosnpdb.appliedbioinformatics.com.au/index.jsp?species=" } \ No newline at end of file diff --git a/data/avedissr/avedissrbioschemas.jsonld b/data/avedissr/avedissrbioschemas.jsonld index 16d47e783588c..f429543e1c968 100644 --- a/data/avedissr/avedissrbioschemas.jsonld +++ b/data/avedissr/avedissrbioschemas.jsonld @@ -9,14 +9,18 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.3732/apps.1700018", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/avedissr", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Yong-Bi Fu", "sc:additionalType": "Library", "sc:citation": [ - "pubmed:28791204", "pmcid:PMC5546164", + "pubmed:28791204", { "@id": "https://doi.org/10.3732/apps.1700018" } @@ -27,15 +31,11 @@ }, "sc:name": "AveDissR", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "https://figshare.com/articles/AveDissR_An_R_function_for_assessing_genetic_distinctness_and_genetic_redundancy/5082451/3" - }, - { - "@id": "https://doi.org/10.3732/apps.1700018", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/avia/aviabioschemas.jsonld b/data/avia/aviabioschemas.jsonld index 377938379158e..f3414b0feff09 100644 --- a/data/avia/aviabioschemas.jsonld +++ b/data/avia/aviabioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Web based annotation and visualization workflow that allow users with variation data to easily get more information about their specific mutations without having to search multiple websites or databases.", "sc:name": "AVIA", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://avia.abcc.ncifcrf.gov" } \ No newline at end of file diff --git a/data/avpdb/avpdbbioschemas.jsonld b/data/avpdb/avpdbbioschemas.jsonld index 2157b1ae8a93f..8f2a8c496e4cb 100644 --- a/data/avpdb/avpdbbioschemas.jsonld +++ b/data/avpdb/avpdbbioschemas.jsonld @@ -9,21 +9,17 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1093/nar/gkt1191", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/avpdb", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Dr. Manoj Kumar", "sc:additionalType": "Database portal", "sc:citation": [ - "pubmed:24285301", "pmcid:PMC3964995", { "@id": "https://doi.org/10.1093/nar/gkt1191" - } + }, + "pubmed:24285301" ], "sc:description": "Anti Viral Peptide Database. Experimentally verified AVPs targeting over 60 medically important viruses including Influenza, HCV, HSV, RSV, HBV, DENV, SARS, etc.", "sc:featureList": { @@ -32,6 +28,10 @@ "sc:name": "AVPdb", "sc:operatingSystem": "Linux", "sc:url": "http://crdd.osdd.net/servers/avpdb/" + }, + { + "@id": "https://doi.org/10.1093/nar/gkt1191", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/avppred/avppredbioschemas.jsonld b/data/avppred/avppredbioschemas.jsonld index a15201d31f1fe..664273ae9293e 100644 --- a/data/avppred/avppredbioschemas.jsonld +++ b/data/avppred/avppredbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "ANPpred webserver is an antiviral peptide prediction server. It contains 1245 peptides which have been experimentally validated for antiviral activity against human viruses.", "sc:name": "AVPpred", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://crdd.osdd.net/servers/avppred" } \ No newline at end of file diff --git a/data/axiom_analysis_suite/axiom_analysis_suitebioschemas.jsonld b/data/axiom_analysis_suite/axiom_analysis_suitebioschemas.jsonld index a6acd5d71e9a5..68808ec944d01 100644 --- a/data/axiom_analysis_suite/axiom_analysis_suitebioschemas.jsonld +++ b/data/axiom_analysis_suite/axiom_analysis_suitebioschemas.jsonld @@ -9,14 +9,14 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/S12864-019-5712-3", - "@type": "sc:CreativeWork" - }, { "@id": "https://orcid.org/0000-0001-9224-056X", "@type": "schema:Person" }, + { + "@id": "https://doi.org/10.1186/S12864-019-5712-3", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/Axiom_Analysis_Suite", "@type": "sc:SoftwareApplication", @@ -37,13 +37,13 @@ "sc:description": "Axiom Analysis Suite advances genotyping data analysis with a single-source software package to enable complete genotyping analysis of all Axiom arrays and copy number analysis on select Axiom arrays.", "sc:featureList": [ { - "@id": "edam:operation_3196" + "@id": "edam:operation_0308" }, { - "@id": "edam:operation_0484" + "@id": "edam:operation_3196" }, { - "@id": "edam:operation_0308" + "@id": "edam:operation_0484" } ], "sc:license": "Unlicense", diff --git a/data/axiome/axiomebioschemas.jsonld b/data/axiome/axiomebioschemas.jsonld index 9e2161d2d0646..bd7f77c8ab731 100644 --- a/data/axiome/axiomebioschemas.jsonld +++ b/data/axiome/axiomebioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Automation, eXtension, and Integration Of Microbial Ecology is a highly flexible and extensible management tool for popular microbial ecology analysis packages that promotes reproducibility and customization in microbial research.", "sc:name": "AXIOME", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://neufeld.github.io/AXIOME/" } \ No newline at end of file diff --git a/data/axonpacking/axonpackingbioschemas.jsonld b/data/axonpacking/axonpackingbioschemas.jsonld index 157e692767da9..e5553fd1bbfe8 100644 --- a/data/axonpacking/axonpackingbioschemas.jsonld +++ b/data/axonpacking/axonpackingbioschemas.jsonld @@ -28,8 +28,8 @@ "sc:license": "MIT", "sc:name": "AxonPacking", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/neuropoly/axonpacking" }, diff --git a/data/ayla/aylabioschemas.jsonld b/data/ayla/aylabioschemas.jsonld index 71dfb71bb59b3..ebe4a3def8437 100644 --- a/data/ayla/aylabioschemas.jsonld +++ b/data/ayla/aylabioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "A free, open source visualization tool for researchers in biochemistry, molecular dynamics, and protein folding.", "sc:name": "Ayla", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://www.aylasoftware.org/" } \ No newline at end of file diff --git a/data/azahar/azaharbioschemas.jsonld b/data/azahar/azaharbioschemas.jsonld index 58384c0c669f5..34d9357fcf414 100644 --- a/data/azahar/azaharbioschemas.jsonld +++ b/data/azahar/azaharbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "PyMOL plugin for construction, visualization and analysis of glycan molecules.", "sc:name": "Azahar", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "https://pymolwiki.org/index.php/Azahar" } \ No newline at end of file diff --git a/data/azara/azarabioschemas.jsonld b/data/azara/azarabioschemas.jsonld index 9e5c636633fe6..4e196e47d21d9 100644 --- a/data/azara/azarabioschemas.jsonld +++ b/data/azara/azarabioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Collection of NMR programs for interactive display and processing of NMR data.", "sc:name": "AZARA", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:provider": "Instruct", "sc:url": "http://www.ccpn.ac.uk/azara/", diff --git a/data/b6db/b6dbbioschemas.jsonld b/data/b6db/b6dbbioschemas.jsonld index 90ab321c7a02f..afa0ebab45a87 100644 --- a/data/b6db/b6dbbioschemas.jsonld +++ b/data/b6db/b6dbbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "The B6 Database (B6DB)", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:provider": "ELIXIR-ITA-PARMA", "sc:url": "http://bioinformatics.unipr.it/B6db" diff --git a/data/baalchip/baalchipbioschemas.jsonld b/data/baalchip/baalchipbioschemas.jsonld index 40f526eaa3369..3ad4018244e2e 100644 --- a/data/baalchip/baalchipbioschemas.jsonld +++ b/data/baalchip/baalchipbioschemas.jsonld @@ -20,8 +20,8 @@ "sc:name": "BaalChIP", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BaalChIP.html", "sc:version": "1.0.0" diff --git a/data/babelomics/babelomicsbioschemas.jsonld b/data/babelomics/babelomicsbioschemas.jsonld index 35dfc8fc82118..c7c4d5c3d3bf8 100644 --- a/data/babelomics/babelomicsbioschemas.jsonld +++ b/data/babelomics/babelomicsbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Integrative platform for the analysis of Transcriptomics, Proteomics and Genomics data with advanced functional profiling. It integrates primary (normalization, calls, etc.) and secondary (signatures, predictors, associations, TDTs, clustering, etc.) analysis tools within an environment that allows relating genomic data and/or interpreting them by means of different functional enrichment or gene set methods.", "sc:name": "Babelomics", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:provider": [ "cipf.es", diff --git a/data/bac/bacbioschemas.jsonld b/data/bac/bacbioschemas.jsonld index 30adee71eddba..2ad5e79de59bb 100644 --- a/data/bac/bacbioschemas.jsonld +++ b/data/bac/bacbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Raphael Gottardo", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "This package uses a Bayesian hierarchical model to detect enriched regions from ChIP-chip experiments.", "sc:license": "Artistic-2.0", diff --git a/data/baca/bacabioschemas.jsonld b/data/baca/bacabioschemas.jsonld index 75bb7ce754ee6..fbfa7bcf1047b 100644 --- a/data/baca/bacabioschemas.jsonld +++ b/data/baca/bacabioschemas.jsonld @@ -19,27 +19,27 @@ "biotools:primaryContact": "Vittorio Fortino", "sc:additionalType": "Library", "sc:citation": [ + "pmcid:PMC4377007", { "@id": "https://doi.org/10.1186/S12859-015-0477-4" }, - "pmcid:PMC4377007", "pubmed:25652236" ], "sc:description": "R-based graphical tool to concisely visualise and compare biological annotations queried from the DAVID web service.", "sc:featureList": [ { - "@id": "edam:operation_0361" + "@id": "edam:operation_2451" }, { - "@id": "edam:operation_2451" + "@id": "edam:operation_0361" } ], "sc:license": "GPL-3.0", "sc:name": "BACA", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://cran.r-project.org/web/packages/BACA/" } diff --git a/data/bacarena/bacarenabioschemas.jsonld b/data/bacarena/bacarenabioschemas.jsonld index 0769fa29b3cf7..adddd237042f6 100644 --- a/data/bacarena/bacarenabioschemas.jsonld +++ b/data/bacarena/bacarenabioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "BacArena", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://cran.r-project.org/web/packages/BacArena/index.html" } \ No newline at end of file diff --git a/data/bacdive/bacdivebioschemas.jsonld b/data/bacdive/bacdivebioschemas.jsonld index 43dfc67473609..4fa7046073b70 100644 --- a/data/bacdive/bacdivebioschemas.jsonld +++ b/data/bacdive/bacdivebioschemas.jsonld @@ -14,13 +14,13 @@ "sc:description": "Provides strain-linked information about bacterial and archaeal biodiversity. The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology. The majority of data is manually annotated and curated.", "sc:name": "BacDive", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:provider": [ - "Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH", - "bacdive" + "bacdive", + "Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH" ], "sc:url": "http://bacdive.dsmz.de" } \ No newline at end of file diff --git a/data/bacdive_ws/bacdive_wsbioschemas.jsonld b/data/bacdive_ws/bacdive_wsbioschemas.jsonld index d04f83d4afedd..2c98c6eaff303 100644 --- a/data/bacdive_ws/bacdive_wsbioschemas.jsonld +++ b/data/bacdive_ws/bacdive_wsbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/bacdive_ws", "@type": "sc:SoftwareApplication", "sc:additionalType": [ - "Command-line tool", - "Database portal" + "Database portal", + "Command-line tool" ], "sc:description": "Retrieving contents of BacDive and related information resources in a machine-readable form. BacDive is the Bacterial Diversity Metadatabase and provides strain-linked information about bacterial and archaeal biodiversity. The web-service offers several possibilities to query detailed strain information. It allows the retrieval by genus, species and/or subspecies, a given culture collection number or an INSDC accession number.", "sc:name": "BacDive WS", diff --git a/data/bacdiver/bacdiverbioschemas.jsonld b/data/bacdiver/bacdiverbioschemas.jsonld index 3073d76097076..8a6d1d2b0b6b9 100644 --- a/data/bacdiver/bacdiverbioschemas.jsonld +++ b/data/bacdiver/bacdiverbioschemas.jsonld @@ -16,10 +16,10 @@ "@id": "https://orcid.org/0000-0001-5135-5758" }, "sc:additionalType": [ - "Web service", "Library", - "Script", "Plug-in", + "Web service", + "Script", "Command-line tool" ], "sc:description": "The DSMZ's Bacterial Diversity Metadatabase (BacDive) focuses on providing organism-linked information covering the multifarious aspects of bacterial biodiversity: taxonomic classification, morphology, physiology, cultivation, origin natural habitat and more, both for bacterial and archaeal strains. BacDiveR helps you investigate this data offline, and semi-automatically in R.", diff --git a/data/bacello/bacellobioschemas.jsonld b/data/bacello/bacellobioschemas.jsonld index c3b998ff3112d..91740594e8871 100644 --- a/data/bacello/bacellobioschemas.jsonld +++ b/data/bacello/bacellobioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Predictor for the subcellular localization of proteins in eukaryotes.", "sc:name": "BaCelLo", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:provider": "ELIXIR-ITA-BOLOGNA", diff --git a/data/backclip/backclipbioschemas.jsonld b/data/backclip/backclipbioschemas.jsonld index 5ebc300727142..33c63c3bf362e 100644 --- a/data/backclip/backclipbioschemas.jsonld +++ b/data/backclip/backclipbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Tool to identify the presence of common RNA background in a PAR-CLIP dataset.", "sc:name": "BackCLIP", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "https://github.com/phrh/BackCLIP" } \ No newline at end of file diff --git a/data/backtranambig-ebi/backtranambig-ebibioschemas.jsonld b/data/backtranambig-ebi/backtranambig-ebibioschemas.jsonld index 9e22ad38a316e..7830f6909d73c 100644 --- a/data/backtranambig-ebi/backtranambig-ebibioschemas.jsonld +++ b/data/backtranambig-ebi/backtranambig-ebibioschemas.jsonld @@ -22,9 +22,9 @@ "sc:description": "Back-translate a protein sequence to ambiguous nucleotide sequence. It reads a protein sequence and writes the nucleic acid sequence it could have come from. It does this by using nucleotide ambiguity codes that represent all possible codons for each amino acid.", "sc:name": "backtranambig (EBI)", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:provider": "EMBL-EBI", "sc:url": "http://www.ebi.ac.uk/Tools/st/emboss_backtranambig/", diff --git a/data/backtranambig/backtranambigbioschemas.jsonld b/data/backtranambig/backtranambigbioschemas.jsonld index 7310a5820e776..5ed29dbfc4d36 100644 --- a/data/backtranambig/backtranambigbioschemas.jsonld +++ b/data/backtranambig/backtranambigbioschemas.jsonld @@ -12,9 +12,9 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "Wellcome Trust", "EMBOSS Contributors", "UK BBSRC", + "Wellcome Trust", "UK MRC" ], "sc:description": "Back-translate a protein sequence to ambiguous nucleotide sequence.", @@ -26,13 +26,13 @@ "sc:license": "GPL-3.0", "sc:name": "backtranambig", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:provider": [ - "EMBOSS", - "EMBL EBI" + "EMBL EBI", + "EMBOSS" ], "sc:url": "http://emboss.open-bio.org/rel/rel6/apps/backtranambig.html", "sc:version": "r6" diff --git a/data/backtranseq-ebi/backtranseq-ebibioschemas.jsonld b/data/backtranseq-ebi/backtranseq-ebibioschemas.jsonld index 7c88a4a40919c..9703b64ae734e 100644 --- a/data/backtranseq-ebi/backtranseq-ebibioschemas.jsonld +++ b/data/backtranseq-ebi/backtranseq-ebibioschemas.jsonld @@ -16,15 +16,15 @@ "Web application" ], "sc:author": [ - "EMBOSS", - "Web Production" + "Web Production", + "EMBOSS" ], "sc:description": "Back-translate a protein sequence to a nucleotide sequence, using codon frequency.It reads a protein sequence and writes the nucleic acid sequence it is most likely to have come from.", "sc:name": "backtranseq (EBI)", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:provider": "EMBL-EBI", "sc:url": "http://www.ebi.ac.uk/Tools/st/emboss_backtranseq/", diff --git a/data/backtranseq/backtranseqbioschemas.jsonld b/data/backtranseq/backtranseqbioschemas.jsonld index deee950718e58..84194496b0314 100644 --- a/data/backtranseq/backtranseqbioschemas.jsonld +++ b/data/backtranseq/backtranseqbioschemas.jsonld @@ -13,26 +13,26 @@ "sc:additionalType": "Command-line tool", "sc:contributor": [ "UK MRC", + "UK BBSRC", "EMBOSS Contributors", - "Wellcome Trust", - "UK BBSRC" + "Wellcome Trust" ], "sc:description": "Back-translate a protein sequence to a nucleotide sequence.", "sc:funder": [ "UK BBSRC", - "Wellcome Trust", - "UK MRC" + "UK MRC", + "Wellcome Trust" ], "sc:license": "GPL-3.0", "sc:name": "backtranseq", "sc:operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "sc:provider": [ - "EMBOSS", - "EMBL EBI" + "EMBL EBI", + "EMBOSS" ], "sc:url": "http://emboss.open-bio.org/rel/rel6/apps/backtranseq.html", "sc:version": "r6" diff --git a/data/bacmap/bacmapbioschemas.jsonld b/data/bacmap/bacmapbioschemas.jsonld index 8cef315a4c98a..bb1ca6f913765 100644 --- a/data/bacmap/bacmapbioschemas.jsonld +++ b/data/bacmap/bacmapbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "An interactive visual database containing hundreds of fully labeled, zoomable, and searchable maps of bacterial genomes.", "sc:name": "BacMap", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bacmap.wishartlab.com/" } \ No newline at end of file diff --git a/data/bacoca/bacocabioschemas.jsonld b/data/bacoca/bacocabioschemas.jsonld index 07706ec4b794e..03636777d72b3 100644 --- a/data/bacoca/bacocabioschemas.jsonld +++ b/data/bacoca/bacocabioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "BAse COmposition CAlculator is a user-friendly software that combines multiple statistical approaches (like RCFV and C value calculations) to identify biases in aligned sequence data which potentially mislead phylogenetic reconstructions.", "sc:name": "BaCoCa", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://annelida.de/research/bioinformatics/software/index.html" diff --git a/data/bacom/bacombioschemas.jsonld b/data/bacom/bacombioschemas.jsonld index 6825409ca37f3..3607e75bca46c 100644 --- a/data/bacom/bacombioschemas.jsonld +++ b/data/bacom/bacombioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Bayesian Analysis of COpy number Mixtures is a statistically-principled in silico approach to accurately estimate genomic deletions and normal tissue contamination, and accordingly recover the true copy number profile in cancer cells. We have developed a cross-platform and open source Java application that implements the whole pipeline of copy number analysis of heterogeneous cancer tissues and other relevant processing steps. We also provide an R interface, bacomR.", "sc:name": "BACOM", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "http://code.google.com/p/bacom/" } \ No newline at end of file diff --git a/data/bacon/baconbioschemas.jsonld b/data/bacon/baconbioschemas.jsonld index 5570b9d59b257..56d9000c8492e 100644 --- a/data/bacon/baconbioschemas.jsonld +++ b/data/bacon/baconbioschemas.jsonld @@ -33,8 +33,8 @@ "sc:license": "GPL-2.0", "sc:name": "bacon", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/bacon.html", diff --git a/data/bacpp/bacppbioschemas.jsonld b/data/bacpp/bacppbioschemas.jsonld index de50bec6fafba..16697579db003 100644 --- a/data/bacpp/bacppbioschemas.jsonld +++ b/data/bacpp/bacppbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "BacPP", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://www.bacpp.bioinfoucs.com/home" } \ No newline at end of file diff --git a/data/bactag/bactagbioschemas.jsonld b/data/bactag/bactagbioschemas.jsonld index 96b1321ccc3f5..7aa692aa5e7b5 100644 --- a/data/bactag/bactagbioschemas.jsonld +++ b/data/bactag/bactagbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://orcid.org/0000-0002-0218-9092", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/BacTag", "@type": "sc:SoftwareApplication", @@ -24,8 +20,8 @@ { "@id": "https://doi.org/10.1186/S12864-019-5723-0" }, - "pmcid:PMC6501397", - "pubmed:31060512" + "pubmed:31060512", + "pmcid:PMC6501397" ], "sc:description": "Pipeline for fast and accurate gene and allele typing in bacterial sequencing data based on database preprocessing.", "sc:featureList": [ @@ -42,8 +38,8 @@ "sc:license": "Unlicense", "sc:name": "BacTag", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "https://git.lumc.nl/l.khachatryan/BacTag" @@ -51,6 +47,10 @@ { "@id": "https://doi.org/10.1186/S12864-019-5723-0", "@type": "sc:CreativeWork" + }, + { + "@id": "https://orcid.org/0000-0002-0218-9092", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/bactgeneshow/bactgeneshowbioschemas.jsonld b/data/bactgeneshow/bactgeneshowbioschemas.jsonld index 20653299998dc..3d628ac9ad9c5 100644 --- a/data/bactgeneshow/bactgeneshowbioschemas.jsonld +++ b/data/bactgeneshow/bactgeneshowbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "This tool analyses bacterial sequences and detects genes.", "sc:name": "bactgeneSHOW", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:provider": "IFB ELIXIR-FR", "sc:url": "http://genome.jouy.inra.fr/ssb/SHOW/", diff --git a/data/bactsnp/bactsnpbioschemas.jsonld b/data/bactsnp/bactsnpbioschemas.jsonld index 032504ebfdf35..4e39fe6c77305 100644 --- a/data/bactsnp/bactsnpbioschemas.jsonld +++ b/data/bactsnp/bactsnpbioschemas.jsonld @@ -9,38 +9,38 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1099/MGEN.0.000261", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/BactSNP", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Takehiko Itoh", "sc:additionalType": "Command-line tool", "sc:citation": [ + "pmcid:PMC6562250", { "@id": "https://doi.org/10.1099/MGEN.0.000261" }, - "pmcid:PMC6562250", "pubmed:31099741" ], "sc:description": "Tool to identify SNPs among bacterial isolates. BactSNP can detect SNPs and create a simple TSV file with SNP information as well as an alignment FASTA file containing reconstructed pseudo-genomes of the target isolates in a one-step process.", "sc:featureList": [ { - "@id": "edam:operation_3840" + "@id": "edam:operation_0484" }, { "@id": "edam:operation_3216" }, { - "@id": "edam:operation_0484" + "@id": "edam:operation_3840" } ], "sc:license": "GPL-3.0", "sc:name": "BactSNP", "sc:operatingSystem": "Linux", "sc:url": "https://github.com/IEkAdN/BactSNP" - }, - { - "@id": "https://doi.org/10.1099/MGEN.0.000261", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/bader/baderbioschemas.jsonld b/data/bader/baderbioschemas.jsonld index 06d0f1e105fd0..5fe78e84c8932 100644 --- a/data/bader/baderbioschemas.jsonld +++ b/data/bader/baderbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-2.0", "sc:name": "BADER", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BADER.html", "sc:version": "1.12.0" diff --git a/data/badregionfinder/badregionfinderbioschemas.jsonld b/data/badregionfinder/badregionfinderbioschemas.jsonld index ed25fcca3c879..9efea2d97f018 100644 --- a/data/badregionfinder/badregionfinderbioschemas.jsonld +++ b/data/badregionfinder/badregionfinderbioschemas.jsonld @@ -12,15 +12,15 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Sarah Sandmann", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "This package identifies regions with a bad, acceptable and good coverage in sequence alignment data available as bam files. The whole genome may be considered as well as a set of target regions. Various visual and textual types of output are available.", "sc:license": "GPL-3.0", "sc:name": "BadRegionFinder", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BadRegionFinder.html", diff --git a/data/badtrip/badtripbioschemas.jsonld b/data/badtrip/badtripbioschemas.jsonld index 03f90034b3cad..b29d49ea024d1 100644 --- a/data/badtrip/badtripbioschemas.jsonld +++ b/data/badtrip/badtripbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "Other", "sc:name": "BadTrIP", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://bitbucket.org/nicofmay/badtrip" } \ No newline at end of file diff --git a/data/bagel/bagelbioschemas.jsonld b/data/bagel/bagelbioschemas.jsonld index 0aca84d933456..f6de1b2a53e40 100644 --- a/data/bagel/bagelbioschemas.jsonld +++ b/data/bagel/bagelbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "BActeriocin GEnome mining tooL (BAGEL) identifies putative bacteriocin ORFs (antimicrobial peptides) based on a database containing information about known bacteriocins and adjacent genes involved in bacteriocin activity.", "sc:name": "BAGEL", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://bagel.molgenrug.nl/" } \ No newline at end of file diff --git a/data/bagel3/bagel3bioschemas.jsonld b/data/bagel3/bagel3bioschemas.jsonld index bff93c3406c10..8f936c3e7a39f 100644 --- a/data/bagel3/bagel3bioschemas.jsonld +++ b/data/bagel3/bagel3bioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Automated identification of genes encoding bacteriocins and (non)-bacteriocidal post-translationally modified peptides using updated bacteriocin and context protein databases. Input is single or multiple FASTA formatted files.", "sc:name": "BAGEL3", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "http://bagel.molgenrug.nl" } \ No newline at end of file diff --git a/data/bagheera/bagheerabioschemas.jsonld b/data/bagheera/bagheerabioschemas.jsonld index c089697ec4364..7b865b2fcc3b9 100644 --- a/data/bagheera/bagheerabioschemas.jsonld +++ b/data/bagheera/bagheerabioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Bagheera is a web server of prediction of genes in yeast species by providing the correct CUG decoding scheme , that allows determining the most probable CUG codon translation for a given transcriptome or genome assembly based on extensive reference data.", "sc:name": "Bagheera", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:url": "http://www.motorprotein.de/bagheera" } \ No newline at end of file diff --git a/data/bagpipe/bagpipebioschemas.jsonld b/data/bagpipe/bagpipebioschemas.jsonld index 7ee1976c32e64..33872668e0650 100644 --- a/data/bagpipe/bagpipebioschemas.jsonld +++ b/data/bagpipe/bagpipebioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Bagpipe is a program for performing genomewide linkage disequilibrium mapping of quantitative trait loci in populations whose genome structure can be accommodated in the happy framework. This includes most diploid crosses where the founders of the individuals have known genotypes.", "sc:name": "Bagpipe", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://valdarlab.unc.edu/software/bagpipe/_build/html/index.html", "sc:version": "0.33" diff --git a/data/bait/baitbioschemas.jsonld b/data/bait/baitbioschemas.jsonld index 640ebc5e357ba..da8d4853dc424 100644 --- a/data/bait/baitbioschemas.jsonld +++ b/data/bait/baitbioschemas.jsonld @@ -14,11 +14,11 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:citation": [ - "pubmed:23042453", - "pmcid:PMC3580294", { "@id": "https://doi.org/10.1038/nmeth.2206" - } + }, + "pmcid:PMC3580294", + "pubmed:23042453" ], "sc:description": "BAIT (Bioinformatic Analysis of Inherited Templates) is a software to create strand inheritance plots in data derived from the Strand-Seq sequencing protocol. The software is designed to be flexible with a range of species, and basic template folders can called to read in species-specific data.", "sc:featureList": { diff --git a/data/balbes/balbesbioschemas.jsonld b/data/balbes/balbesbioschemas.jsonld index 690247fa488d5..1860a50cb6c4a 100644 --- a/data/balbes/balbesbioschemas.jsonld +++ b/data/balbes/balbesbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "A system for solving protein structures using x-ray crystallographic data.", "sc:name": "BALBES", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:provider": "Instruct", "sc:url": "https://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/balbes/balbes.html", diff --git a/data/balboa/balboabioschemas.jsonld b/data/balboa/balboabioschemas.jsonld index 57ffb0fe8c6dd..474a3738d1bb8 100644 --- a/data/balboa/balboabioschemas.jsonld +++ b/data/balboa/balboabioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "An ORF (Open Reading Frame) annotation approach, in which classifiers are constructed from the class specific expression patterns discovered by bicluster analysis. Firstly a set of bicluster classifiers is build using a labelled training set from the annotated ORFs in the expression data. These biclusters are then used to classify an unlabelled ORF set i.e. the unannotated ORFs from the expression dataset.", "sc:name": "BALBOA", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://mlg.ucd.ie/balboa.html" } \ No newline at end of file diff --git a/data/baldr/baldrbioschemas.jsonld b/data/baldr/baldrbioschemas.jsonld index 73d720615c99b..06ca428c8fe31 100644 --- a/data/baldr/baldrbioschemas.jsonld +++ b/data/baldr/baldrbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "BALDR", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://www.bosingerlab.com/baldr/" } \ No newline at end of file diff --git a/data/bali-phy/bali-phybioschemas.jsonld b/data/bali-phy/bali-phybioschemas.jsonld index e3180cd3c04d3..59b02a342b1f0 100644 --- a/data/bali-phy/bali-phybioschemas.jsonld +++ b/data/bali-phy/bali-phybioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Markov chain Monte Carlo software for simultaneous Bayesian estimation of alignment and phylogeny (and other parameters). It handles generic Bayesian modeling via probabilistic programming.", "sc:name": "BAli-Phy", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://www.bali-phy.org/" } \ No newline at end of file diff --git a/data/ballgown/ballgownbioschemas.jsonld b/data/ballgown/ballgownbioschemas.jsonld index 5c7cb3c6e0d86..b629709bb2993 100644 --- a/data/ballgown/ballgownbioschemas.jsonld +++ b/data/ballgown/ballgownbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Jack Fu", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.", "sc:license": "Artistic-2.0", diff --git a/data/bam2fastq/bam2fastqbioschemas.jsonld b/data/bam2fastq/bam2fastqbioschemas.jsonld index bd5c7443c4429..ad036715f0388 100644 --- a/data/bam2fastq/bam2fastqbioschemas.jsonld +++ b/data/bam2fastq/bam2fastqbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Extract reads from a bam file and write them in fastq format.", "sc:name": "bam2fastq", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "https://gsl.hudsonalpha.org/information/software/bam2fastq", diff --git a/data/bam2roi/bam2roibioschemas.jsonld b/data/bam2roi/bam2roibioschemas.jsonld index e4bb0327c498f..0f3aa4983e4fe 100644 --- a/data/bam2roi/bam2roibioschemas.jsonld +++ b/data/bam2roi/bam2roibioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Create ROI from BAM file.", "sc:name": "bam2roi", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/screno/ngs_roi2/bam2roi/0.2.2", "sc:version": "0.2.2" diff --git a/data/bam_to_bigwig/bam_to_bigwigbioschemas.jsonld b/data/bam_to_bigwig/bam_to_bigwigbioschemas.jsonld index 22747c7e0b31d..ec22dfd5e5fa7 100644 --- a/data/bam_to_bigwig/bam_to_bigwigbioschemas.jsonld +++ b/data/bam_to_bigwig/bam_to_bigwigbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Calculate coverage from a BAM alignment file.", "sc:name": "bam_to_bigwig", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "https://galaxy.pasteur.fr/tool_runner?tool_id=toolshed.pasteur.fr/repos/fmareuil/bam_to_bigwig/bam_to_bigwig/0.1.0", diff --git a/data/bam_to_sam/bam_to_sambioschemas.jsonld b/data/bam_to_sam/bam_to_sambioschemas.jsonld index c579b3989618f..e899d46c48e33 100644 --- a/data/bam_to_sam/bam_to_sambioschemas.jsonld +++ b/data/bam_to_sam/bam_to_sambioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Convert BAM format to SAM format.", "sc:name": "bam_to_sam", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://www.htslib.org/", "sc:version": "1.0.3" diff --git a/data/bam_to_sam_parallel/bam_to_sam_parallelbioschemas.jsonld b/data/bam_to_sam_parallel/bam_to_sam_parallelbioschemas.jsonld index f30a9e351cb24..a96b7e059cdf3 100644 --- a/data/bam_to_sam_parallel/bam_to_sam_parallelbioschemas.jsonld +++ b/data/bam_to_sam_parallel/bam_to_sam_parallelbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Converts a list of BAM format files to SAM format.", "sc:name": "bam_to_sam_parallel", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://www.htslib.org/", "sc:version": "1.0.0" diff --git a/data/bambino/bambinobioschemas.jsonld b/data/bambino/bambinobioschemas.jsonld index 70fe56f4ce047..2ed554d7a70b4 100644 --- a/data/bambino/bambinobioschemas.jsonld +++ b/data/bambino/bambinobioschemas.jsonld @@ -17,9 +17,9 @@ "sc:license": "Unlicense", "sc:name": "Bambino", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://github.com/NCIP/cgr-bambino" } \ No newline at end of file diff --git a/data/bamm-sc/bamm-scbioschemas.jsonld b/data/bamm-sc/bamm-scbioschemas.jsonld index 47c00c3517369..66b7377af4361 100644 --- a/data/bamm-sc/bamm-scbioschemas.jsonld +++ b/data/bamm-sc/bamm-scbioschemas.jsonld @@ -17,12 +17,12 @@ "@id": "https://bio.tools/BAMM-SC", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Zhe Sun", - "Li Chen" + "Li Chen", + "Zhe Sun" ], "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:citation": [ "pubmed:30967541", @@ -34,10 +34,10 @@ "sc:description": "Bayesian mixture model for single-cell sequencing (BAMM-SC) method for clustering droplet-based single cell transcriptomic data from population studies.", "sc:featureList": [ { - "@id": "edam:operation_3431" + "@id": "edam:operation_3216" }, { - "@id": "edam:operation_3216" + "@id": "edam:operation_3431" } ], "sc:license": "GPL-2.0", diff --git a/data/bamseek/bamseekbioschemas.jsonld b/data/bamseek/bamseekbioschemas.jsonld index d572dd7cb8348..f4822bc85f9f5 100644 --- a/data/bamseek/bamseekbioschemas.jsonld +++ b/data/bamseek/bamseekbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "GPL-3.0", "sc:name": "BAMseek", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:url": "https://code.google.com/archive/p/bamseek/" diff --git a/data/bamsi/bamsibioschemas.jsonld b/data/bamsi/bamsibioschemas.jsonld index a018bdb4a5e4e..3cd1c79426876 100644 --- a/data/bamsi/bamsibioschemas.jsonld +++ b/data/bamsi/bamsibioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "GPL-3.0", "sc:name": "BAMSI", "sc:operatingSystem": [ - "Linux", "Mac", + "Linux", "Windows" ], "sc:url": "http://bamsi.research.it.uu.se/" diff --git a/data/bamsignals/bamsignalsbioschemas.jsonld b/data/bamsignals/bamsignalsbioschemas.jsonld index fb864d80ccaeb..87d1354100015 100644 --- a/data/bamsignals/bamsignalsbioschemas.jsonld +++ b/data/bamsignals/bamsignalsbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-2.0", "sc:name": "bamsignals", "sc:operatingSystem": [ - "Linux", "Windows", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/bamsignals.html", "sc:version": "1.6.0" diff --git a/data/bamstats/bamstatsbioschemas.jsonld b/data/bamstats/bamstatsbioschemas.jsonld index fa91e0112202e..ba64882e9af9f 100644 --- a/data/bamstats/bamstatsbioschemas.jsonld +++ b/data/bamstats/bamstatsbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "bamstats", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://www.htslib.org/", "sc:version": "1.0.0" diff --git a/data/bamtools/bamtoolsbioschemas.jsonld b/data/bamtools/bamtoolsbioschemas.jsonld index b0c13f1e52b4d..412db15e73f5a 100644 --- a/data/bamtools/bamtoolsbioschemas.jsonld +++ b/data/bamtools/bamtoolsbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:license": "MIT", "sc:name": "BamTools", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "https://github.com/pezmaster31/bamtools" diff --git a/data/bamview/bamviewbioschemas.jsonld b/data/bamview/bamviewbioschemas.jsonld index 0b32072a35517..e1239ac77ab23 100644 --- a/data/bamview/bamviewbioschemas.jsonld +++ b/data/bamview/bamviewbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "BamView", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bamview.sourceforge.net/" } \ No newline at end of file diff --git a/data/banana/bananabioschemas.jsonld b/data/banana/bananabioschemas.jsonld index 4b3232b243c2a..aeee58b6b4afa 100644 --- a/data/banana/bananabioschemas.jsonld +++ b/data/banana/bananabioschemas.jsonld @@ -12,27 +12,27 @@ "@type": "sc:SoftwareApplication", "sc:additionalType": "Command-line tool", "sc:contributor": [ - "UK BBSRC", - "EMBOSS Contributors", "UK MRC", - "Wellcome Trust" + "EMBOSS Contributors", + "Wellcome Trust", + "UK BBSRC" ], "sc:description": "Plot bending and curvature data for B-DNA.", "sc:funder": [ "UK MRC", - "Wellcome Trust", - "UK BBSRC" + "UK BBSRC", + "Wellcome Trust" ], "sc:license": "GPL-3.0", "sc:name": "banana", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:provider": [ - "EMBL EBI", - "EMBOSS" + "EMBOSS", + "EMBL EBI" ], "sc:url": "http://emboss.open-bio.org/rel/rel6/apps/banana.html", "sc:version": "r6" diff --git a/data/band_dyn_prog/band_dyn_progbioschemas.jsonld b/data/band_dyn_prog/band_dyn_progbioschemas.jsonld index e402787e7f569..479d0ea6c3bb2 100644 --- a/data/band_dyn_prog/band_dyn_progbioschemas.jsonld +++ b/data/band_dyn_prog/band_dyn_progbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Dynamic programming in a band is well suited to the problem of aligning long reads between themselves and can be used as a core component of methods for obtaining a consensus sequence from the long reads alone.", "sc:name": "BAND_DYN_PROG", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "https://forgemia.inra.fr/jean-francois.gibrat/BAND_DYN_PROG" } \ No newline at end of file diff --git a/data/bandage/bandagebioschemas.jsonld b/data/bandage/bandagebioschemas.jsonld index fd3c7913e8c7a..022f7c29ac74b 100644 --- a/data/bandage/bandagebioschemas.jsonld +++ b/data/bandage/bandagebioschemas.jsonld @@ -11,29 +11,29 @@ "@id": "https://bio.tools/bandage", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Ryan Wick", - "Australia" + "Australia", + "Ryan Wick" ], "sc:additionalType": "Desktop application", "sc:author": "Ryan Wick", "sc:contributor": [ + "Justin Zobel", + "Rayan Chikhi", "Kathryn Holt", "Elmar Pruesse", - "Rayan Chikhi", - "Justin Zobel", "Mark Schultz" ], "sc:description": "GUI program that allows users to interact with the assembly graphs made by de novo assemblers such as Velvet, SPAdes, MEGAHIT and others. It visualises assembly graphs, with connections, using graph layout algorithms.", "sc:license": "GPL-3.0", "sc:name": "Bandage", "sc:operatingSystem": [ - "Windows", "Linux", + "Windows", "Mac" ], "sc:provider": [ - "unimelb.edu.au", - "University of Melbourne, Australia" + "University of Melbourne, Australia", + "unimelb.edu.au" ], "sc:url": "https://rrwick.github.io/Bandage/", "sc:version": "1" diff --git a/data/bankit/bankitbioschemas.jsonld b/data/bankit/bankitbioschemas.jsonld index 033f9faaea2f4..98ba6165696eb 100644 --- a/data/bankit/bankitbioschemas.jsonld +++ b/data/bankit/bankitbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Web-based submission of one or a few sequences to GenBank.", "sc:name": "BankIt", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://www.ncbi.nlm.nih.gov/BankIt/" } \ No newline at end of file diff --git a/data/banocc/banoccbioschemas.jsonld b/data/banocc/banoccbioschemas.jsonld index 84779a8642d1e..b0b4074c73135 100644 --- a/data/banocc/banoccbioschemas.jsonld +++ b/data/banocc/banoccbioschemas.jsonld @@ -20,8 +20,8 @@ "sc:license": "MIT", "sc:name": "banocc", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/banocc.html", diff --git a/data/bar-plus/bar-plusbioschemas.jsonld b/data/bar-plus/bar-plusbioschemas.jsonld index ea6dd94bee2ce..4bd1da91120c6 100644 --- a/data/bar-plus/bar-plusbioschemas.jsonld +++ b/data/bar-plus/bar-plusbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "BAR-PLUS is a web tool for functional and structural annotation of protein sequences based on a large scale genome cross comparison and a non-hierarchical clustering procedure. Sequence annotation is derived from UniProtKB, GO, Pfam and PDB.\n\nThis is a legacy version, please refer to https://bio.tools/bar for the latest release.", "sc:name": "BAR-PLUS", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:provider": "ELIXIR-ITA-BOLOGNA", "sc:url": "https://bar.biocomp.unibo.it/bar2.0/", diff --git a/data/bar/barbioschemas.jsonld b/data/bar/barbioschemas.jsonld index 229e8d64317e1..79bf3b834e725 100644 --- a/data/bar/barbioschemas.jsonld +++ b/data/bar/barbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "It is for the annotation of protein sequences relying on a comparative large-scale analysis on the entire UniProt. With BAR 3.0 and a sequence you can annotate when possible: function, structure, protein domains. Also if your sequence falls into a cluster with a structural/some structural template/s we provide an alignment towards the template/templates based on the Cluster-HMM that allows you to directly compute your 3D model. Cluster HMMs are available for downloading.", "sc:name": "BAR", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:provider": "ELIXIR-ITA-BOLOGNA", "sc:url": "https://bar.biocomp.unibo.it/bar3/", diff --git a/data/barcod/barcodbioschemas.jsonld b/data/barcod/barcodbioschemas.jsonld index ee87708231d46..e0d640667a111 100644 --- a/data/barcod/barcodbioschemas.jsonld +++ b/data/barcod/barcodbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "BARCOD", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://wwwabi.snv.jussieu.fr/public/Barcod/", "sc:version": "1.0" diff --git a/data/barcode_generator/barcode_generatorbioschemas.jsonld b/data/barcode_generator/barcode_generatorbioschemas.jsonld index 9ec15c0a494df..3935b66514ebc 100644 --- a/data/barcode_generator/barcode_generatorbioschemas.jsonld +++ b/data/barcode_generator/barcode_generatorbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "The program generates barcodes for sequences suitable for Illumina sequencing.", "sc:name": "Barcode generator", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://comailab.genomecenter.ucdavis.edu/index.php/Barcode_generator" } \ No newline at end of file diff --git a/data/barcosel/barcoselbioschemas.jsonld b/data/barcosel/barcoselbioschemas.jsonld index ecea3da0a21de..3800b49177aae 100644 --- a/data/barcosel/barcoselbioschemas.jsonld +++ b/data/barcosel/barcoselbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "It is a web tool for selecting an optimal set of barcode sequences. User must provide a set of candidate barcodes from which the defined number of barcodes is selected.", "sc:name": "BARCOSEL", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://ekhidna2.biocenter.helsinki.fi/barcosel/" diff --git a/data/barcrawl_bartab/barcrawl_bartabbioschemas.jsonld b/data/barcrawl_bartab/barcrawl_bartabbioschemas.jsonld index 463c5cdb9b11d..a00794c6699e6 100644 --- a/data/barcrawl_bartab/barcrawl_bartabbioschemas.jsonld +++ b/data/barcrawl_bartab/barcrawl_bartabbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:license": "GPL-3.0", "sc:name": "Barcrawl Bartab", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://www.phyloware.com/Phyloware/XSTK.html" } \ No newline at end of file diff --git a/data/barnaba/barnababioschemas.jsonld b/data/barnaba/barnababioschemas.jsonld index cd55d524b628a..9ba303972188c 100644 --- a/data/barnaba/barnababioschemas.jsonld +++ b/data/barnaba/barnababioschemas.jsonld @@ -17,8 +17,8 @@ "sc:license": "GPL-3.0", "sc:name": "Barnaba", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://github.com/srnas/barnaba" } \ No newline at end of file diff --git a/data/barnacle/barnaclebioschemas.jsonld b/data/barnacle/barnaclebioschemas.jsonld index a856a071f3931..bf1365a7b8f8f 100644 --- a/data/barnacle/barnaclebioschemas.jsonld +++ b/data/barnacle/barnaclebioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Python library for RNA 3D structure prediction. It can be used for probabilistic sampling of RNA structures that are compatible with a given nucleotide sequence and that are RNA like on a local length scale.", "sc:name": "BARNACLE", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:provider": "binf.ku.dk", "sc:url": "http://sourceforge.net/projects/barnacle-rna/", diff --git a/data/barrnap/barrnapbioschemas.jsonld b/data/barrnap/barrnapbioschemas.jsonld index d31140bfd91ef..d17b7b6161e57 100644 --- a/data/barrnap/barrnapbioschemas.jsonld +++ b/data/barrnap/barrnapbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/barrnap", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Torsten Seemann", - "Australia" + "Australia", + "Torsten Seemann" ], "sc:additionalType": "Command-line tool", "sc:author": "Torsten Seemann", @@ -20,8 +20,8 @@ "sc:license": "GPL-3.0", "sc:name": "Barrnap", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:provider": [ "unimelb.edu.au", diff --git a/data/bartender/bartenderbioschemas.jsonld b/data/bartender/bartenderbioschemas.jsonld index 99a06cabd93f5..f635a35fc6360 100644 --- a/data/bartender/bartenderbioschemas.jsonld +++ b/data/bartender/bartenderbioschemas.jsonld @@ -11,15 +11,15 @@ "@id": "https://bio.tools/bartender", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Sasha Levy", - "Song Wu" + "Song Wu", + "Sasha Levy" ], "sc:additionalType": "Library", "sc:description": "Fast and accurate clustering algorithm to count barcode reads.", "sc:name": "Bartender", "sc:operatingSystem": [ - "Windows", "Mac", + "Windows", "Linux" ], "sc:url": "https://github.com/LaoZZZZZ/bartender-1.1", diff --git a/data/basecallqc/basecallqcbioschemas.jsonld b/data/basecallqc/basecallqcbioschemas.jsonld index 6c3732deb7c1b..f5b75ca1362bf 100644 --- a/data/basecallqc/basecallqcbioschemas.jsonld +++ b/data/basecallqc/basecallqcbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "basecallQC", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/basecallQC.html", "sc:version": "1.4.0" diff --git a/data/basespacer/basespacerbioschemas.jsonld b/data/basespacer/basespacerbioschemas.jsonld index 3ac46063c81ff..c7b546c998053 100644 --- a/data/basespacer/basespacerbioschemas.jsonld +++ b/data/basespacer/basespacerbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "Apache-2.0", "sc:name": "BaseSpaceR", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BaseSpaceR.html", "sc:version": "1.18.0" diff --git a/data/basic/basicbioschemas.jsonld b/data/basic/basicbioschemas.jsonld index 4c644196af32e..cb5c7dfa0598e 100644 --- a/data/basic/basicbioschemas.jsonld +++ b/data/basic/basicbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Background and shading correction of optical microscopy images.", "sc:name": "BaSiC", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://sites.imagej.net/BaSiC/" } \ No newline at end of file diff --git a/data/basic4cseq/basic4cseqbioschemas.jsonld b/data/basic4cseq/basic4cseqbioschemas.jsonld index 50672ab680963..66c654dda69c3 100644 --- a/data/basic4cseq/basic4cseqbioschemas.jsonld +++ b/data/basic4cseq/basic4cseqbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-3.0", "sc:name": "Basic4Cseq", "sc:operatingSystem": [ - "Windows", "Mac", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/Basic4Cseq.html", "sc:version": "1.10.0" diff --git a/data/basics/basicsbioschemas.jsonld b/data/basics/basicsbioschemas.jsonld index 0ba32d5a62362..90a857ee3d3a3 100644 --- a/data/basics/basicsbioschemas.jsonld +++ b/data/basics/basicsbioschemas.jsonld @@ -11,17 +11,17 @@ "@id": "https://bio.tools/basics", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Catalina A. Vallejos", - "Nils Eling" + "Nils Eling", + "Catalina A. Vallejos" ], "sc:additionalType": "Library", "sc:description": "Bayesian Analysis of Single-Cell Sequencing data is an integrated Bayesian hierarchical model to perform statistical analyses of single-cell RNA sequencing datasets in the context of supervised experiments. It could perform built-in data normalisation and technical noise quantification. BASiCS provides an intuitive detection criterion for highly variable genes within a single group of cells. Also, it can compare gene expression patterns between two or more pre-specified groups of cells.", "sc:license": "GPL-2.0", "sc:name": "BASiCS", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BASiCS.html", "sc:version": "1.2.1" diff --git a/data/basiliscan/basiliscanbioschemas.jsonld b/data/basiliscan/basiliscanbioschemas.jsonld index 90e588684db95..d697b3e820189 100644 --- a/data/basiliscan/basiliscanbioschemas.jsonld +++ b/data/basiliscan/basiliscanbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/s12864-018-5322-5", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/BASILIScan", "@type": "sc:SoftwareApplication", @@ -37,11 +33,15 @@ "sc:license": "Unlicense", "sc:name": "BASILIScan", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "https://basilisc.com/" + }, + { + "@id": "https://doi.org/10.1186/s12864-018-5322-5", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/basilisk/basiliskbioschemas.jsonld b/data/basilisk/basiliskbioschemas.jsonld index 743f30c8207c6..5f5ebc432a80c 100644 --- a/data/basilisk/basiliskbioschemas.jsonld +++ b/data/basilisk/basiliskbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Probabilistic model of the conformational space of amino acid side chains in proteins. It models the chi angles in continuous space, including the influence of the protein's backbone.", "sc:name": "BASILISK", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:provider": "binf.ku.dk", "sc:url": "http://sourceforge.net/projects/basilisk-dbn/", diff --git a/data/bastion6/bastion6bioschemas.jsonld b/data/bastion6/bastion6bioschemas.jsonld index 90bb2160e7d4f..0046f3c343f87 100644 --- a/data/bastion6/bastion6bioschemas.jsonld +++ b/data/bastion6/bastion6bioschemas.jsonld @@ -19,8 +19,8 @@ "sc:name": "Bastion6", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bastion6.erc.monash.edu/" } \ No newline at end of file diff --git a/data/basys/basysbioschemas.jsonld b/data/basys/basysbioschemas.jsonld index 8840b8ebff660..307327f771eba 100644 --- a/data/basys/basysbioschemas.jsonld +++ b/data/basys/basysbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "BASys (Bacterial Annotation System) is a tool for automated annotation of bacterial genomic (chromosomal and plasmid) sequences including gene/protein names, GO functions, COG functions, possible paralogues and orthologues, molecular weights, isoelectric points, operon structures, subcellular localization, signal peptides, transmembrane regions, secondary structures, 3-D structures, reactions, and pathways.", "sc:name": "BASys", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://basys.ca" } \ No newline at end of file diff --git a/data/bat_detective/bat_detectivebioschemas.jsonld b/data/bat_detective/bat_detectivebioschemas.jsonld index 3b1cfb2912b1e..bb5d215b40653 100644 --- a/data/bat_detective/bat_detectivebioschemas.jsonld +++ b/data/bat_detective/bat_detectivebioschemas.jsonld @@ -19,8 +19,8 @@ "sc:name": "Bat Detective", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://www.batdetective.org/" } \ No newline at end of file diff --git a/data/batchmap/batchmapbioschemas.jsonld b/data/batchmap/batchmapbioschemas.jsonld index 5952034c2509f..feaf69ac000a4 100644 --- a/data/batchmap/batchmapbioschemas.jsonld +++ b/data/batchmap/batchmapbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species.", "sc:name": "BatchMap", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "https://github.com/bschiffthaler/BatchMap" diff --git a/data/batchqc/batchqcbioschemas.jsonld b/data/batchqc/batchqcbioschemas.jsonld index 12b9d9c2ee70f..ec124aea041ad 100644 --- a/data/batchqc/batchqcbioschemas.jsonld +++ b/data/batchqc/batchqcbioschemas.jsonld @@ -9,24 +9,20 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1093/bioinformatics/btw538", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/batchqc", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Solaiappan Manimaran", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:citation": [ - "pmcid:PMC5167063", "pubmed:27540268", { "@id": "https://doi.org/10.1093/bioinformatics/btw538" - } + }, + "pmcid:PMC5167063" ], "sc:description": "Sequencing and microarray samples often are collected or processed in multiple batches or at different times. This can produce technical biases that can lead to incorrect results. This is a software tool that streamlines batch preprocessing and evaluation by providing interactive diagnostics, visualizations, and statistical analyses to explore the extent to which batch variation impacts the data. Its diagnostics help determine if batch adjustment is needed, and how correction should be applied.", "sc:featureList": [ @@ -46,6 +42,10 @@ ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BatchQC.html", "sc:version": "1.2.1" + }, + { + "@id": "https://doi.org/10.1093/bioinformatics/btw538", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/batman/batmanbioschemas.jsonld b/data/batman/batmanbioschemas.jsonld index 33b967a77264b..2ae556a16eff4 100644 --- a/data/batman/batmanbioschemas.jsonld +++ b/data/batman/batmanbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/batman", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Jie Hao", - "William Astle" + "William Astle", + "Jie Hao" ], "sc:additionalType": "Library", "sc:citation": "pubmed:18612301", diff --git a/data/batmat/batmatbioschemas.jsonld b/data/batmat/batmatbioschemas.jsonld index 0f3525ab5173e..44da44f0748c1 100644 --- a/data/batmat/batmatbioschemas.jsonld +++ b/data/batmat/batmatbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Google-based, open source, automatic search tool for training materials.", "sc:name": "BATMat", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://imbatmat.com/" } \ No newline at end of file diff --git a/data/batmeth2/batmeth2bioschemas.jsonld b/data/batmeth2/batmeth2bioschemas.jsonld index b99585ff7c3c2..f15efaf996992 100644 --- a/data/batmeth2/batmeth2bioschemas.jsonld +++ b/data/batmeth2/batmeth2bioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/s12859-018-2593-4", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/BatMeth2", "@type": "sc:SoftwareApplication", @@ -22,30 +18,34 @@ "Library" ], "sc:citation": [ - "pmcid:PMC6343306", { "@id": "https://doi.org/10.1186/s12859-018-2593-4" }, - "pubmed:30669962" + "pubmed:30669962", + "pmcid:PMC6343306" ], "sc:description": "Integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping.", "sc:featureList": [ { - "@id": "edam:operation_3186" + "@id": "edam:operation_3206" }, { "@id": "edam:operation_3207" }, { - "@id": "edam:operation_3206" + "@id": "edam:operation_3186" } ], "sc:name": "BatMeth2", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "https://github.com/GuoliangLi-HZAU/BatMeth2" + }, + { + "@id": "https://doi.org/10.1186/s12859-018-2593-4", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/bats/batsbioschemas.jsonld b/data/bats/batsbioschemas.jsonld index 884ee82cb237a..1c98b366be443 100644 --- a/data/bats/batsbioschemas.jsonld +++ b/data/bats/batsbioschemas.jsonld @@ -11,17 +11,17 @@ "@id": "https://bio.tools/bats", "@type": "sc:SoftwareApplication", "sc:additionalType": [ + "Library", "Desktop application", - "Command-line tool", - "Library" + "Command-line tool" ], "sc:citation": "pubmed:17877802", "sc:description": "It consists of a collection of libraries that can be used to run basic sequence analysis tasks. Routines for global alignment (LCS from Fragments, Edit Distance with Gaps), local alignment (approximata string matching with K mismateches or differences), and statistical analysis (Filter, Z-Score and Model Generation ) are included.", "sc:name": "BATS", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://www.math.unipa.it/~raffaele/BATS/index.html" } \ No newline at end of file diff --git a/data/bayescall/bayescallbioschemas.jsonld b/data/bayescall/bayescallbioschemas.jsonld index c73a6e74a12ec..dfb2f2786aade 100644 --- a/data/bayescall/bayescallbioschemas.jsonld +++ b/data/bayescall/bayescallbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/bayescall", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Wei-Chun Kao", - "Yun S. Song" + "Yun S. Song", + "Wei-Chun Kao" ], "sc:additionalType": "Command-line tool", "sc:citation": "pubmed:19661376", @@ -20,9 +20,9 @@ "sc:license": "GPL-3.0", "sc:name": "BayesCall", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "http://bayescall.sourceforge.net/" } \ No newline at end of file diff --git a/data/bayescan/bayescanbioschemas.jsonld b/data/bayescan/bayescanbioschemas.jsonld index b58ce6894bddb..4c38ce2d9ace3 100644 --- a/data/bayescan/bayescanbioschemas.jsonld +++ b/data/bayescan/bayescanbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "BAYEsian genome SCAN for outliers, aims at identifying candidate loci under natural selection from genetic data, using differences in allele frequencies between populations. It is based on the multinomial-Dirichlet model.", "sc:name": "BayeScan", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://cmpg.unibe.ch/software/bayescan/" diff --git a/data/bayesembler/bayesemblerbioschemas.jsonld b/data/bayesembler/bayesemblerbioschemas.jsonld index baf96d63d63b2..407d285f182a8 100644 --- a/data/bayesembler/bayesemblerbioschemas.jsonld +++ b/data/bayesembler/bayesemblerbioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "MIT", "sc:name": "Bayesembler", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:provider": "binf.ku.dk", "sc:url": "http://bioinformatics-centre.github.io/bayesembler/", diff --git a/data/bayesforest/bayesforestbioschemas.jsonld b/data/bayesforest/bayesforestbioschemas.jsonld index a0465cb3c40f4..59cb35031768d 100644 --- a/data/bayesforest/bayesforestbioschemas.jsonld +++ b/data/bayesforest/bayesforestbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "MIT", "sc:name": "BayesForest", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "https://github.com/inuritdino/BayesForest/wiki" } \ No newline at end of file diff --git a/data/bayesfst/bayesfstbioschemas.jsonld b/data/bayesfst/bayesfstbioschemas.jsonld index 53ec64a4ae516..c562ed2e712df 100644 --- a/data/bayesfst/bayesfstbioschemas.jsonld +++ b/data/bayesfst/bayesfstbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Bayesian estimation of the coancestry coefficient FST", "sc:name": "BAYESFST", "sc:operatingSystem": [ - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://www.reading.ac.uk/Statistics/genetics/software.html" } \ No newline at end of file diff --git a/data/bayesknockdown/bayesknockdownbioschemas.jsonld b/data/bayesknockdown/bayesknockdownbioschemas.jsonld index f18b769dbfbe3..72dbfa2325c2c 100644 --- a/data/bayesknockdown/bayesknockdownbioschemas.jsonld +++ b/data/bayesknockdown/bayesknockdownbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-3.0", "sc:name": "BayesKnockdown", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BayesKnockdown.html", "sc:version": "1.0.0" diff --git a/data/bayesmd/bayesmdbioschemas.jsonld b/data/bayesmd/bayesmdbioschemas.jsonld index b1a6cc79a3c1f..46e015d0f87bd 100644 --- a/data/bayesmd/bayesmdbioschemas.jsonld +++ b/data/bayesmd/bayesmdbioschemas.jsonld @@ -11,9 +11,9 @@ "@id": "https://bio.tools/bayesmd", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ + "Ole Winther", "Anders Krogh", - "Man-Hung Eric Tang", - "Ole Winther" + "Man-Hung Eric Tang" ], "sc:additionalType": [ "Command-line tool", @@ -22,9 +22,9 @@ "sc:description": "Flexible, fully Bayesian model for motif discovery consisting of motif, background and alignment modules. It can be customized to different kind of biological applications, e.g. microarray, ChIP-chip, ditag, CAGE data analysis by integrating appropriately chosen features and functionalities.", "sc:name": "BayesMD", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:provider": "binf.ku.dk", "sc:url": "http://bayesmd.binf.ku.dk/", diff --git a/data/bayesmendel/bayesmendelbioschemas.jsonld b/data/bayesmendel/bayesmendelbioschemas.jsonld index 6cbec17421d23..515d9c0d172fe 100644 --- a/data/bayesmendel/bayesmendelbioschemas.jsonld +++ b/data/bayesmendel/bayesmendelbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "R package for Mendelian risk prediction. It includes R implementation of the BRCAPRO and CRCAPRO models, as well as functionality to adapt BRCAPRO and CRCAPRO to specific population and to develop new Mendelian risk prediction models for other syndromes.", "sc:name": "BayesMendel", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://bcb.dfci.harvard.edu/bayesmendel/software.php" diff --git a/data/bayesmix/bayesmixbioschemas.jsonld b/data/bayesmix/bayesmixbioschemas.jsonld index a3c5755455085..495bc107805c2 100644 --- a/data/bayesmix/bayesmixbioschemas.jsonld +++ b/data/bayesmix/bayesmixbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "BayesMix is a piece of computer software, a suite of R functions and C routines with a graphical user interface, which can be used as a tool for performing model-based inference for differential gene expression, using a non-parametric Bayesian mixture probability model for the distribution of gene intensities under different conditions.", "sc:name": "BayesMix", "sc:operatingSystem": [ + "Linux", "Mac", - "Windows", - "Linux" + "Windows" ], "sc:url": "http://bioinformatics.mdanderson.org/main/BayesMix:Overview", "sc:version": "0.8.8" diff --git a/data/bayesmotif/bayesmotifbioschemas.jsonld b/data/bayesmotif/bayesmotifbioschemas.jsonld index 180966b6aae0d..8e859f6b29bf4 100644 --- a/data/bayesmotif/bayesmotifbioschemas.jsonld +++ b/data/bayesmotif/bayesmotifbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "BayesMotif is a de novo identification algorithm for finding a common type of protein sorting motifs in which a highly conserved anchor is present along with a less conserved motif regions.", "sc:name": "BayesMotif", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://mleg.cse.sc.edu/BayesMotif/", diff --git a/data/bayespeak/bayespeakbioschemas.jsonld b/data/bayespeak/bayespeakbioschemas.jsonld index 0d3441584ab24..70bf1d5212927 100644 --- a/data/bayespeak/bayespeakbioschemas.jsonld +++ b/data/bayespeak/bayespeakbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Jonathan Cairns", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:citation": "pubmed:21914728", "sc:description": "This package is an implementation of the BayesPeak algorithm for peak-calling in ChIP-seq data.", diff --git a/data/bayespi-bar2/bayespi-bar2bioschemas.jsonld b/data/bayespi-bar2/bayespi-bar2bioschemas.jsonld index 0cb0dd3ed2559..261bb262f7a30 100644 --- a/data/bayespi-bar2/bayespi-bar2bioschemas.jsonld +++ b/data/bayespi-bar2/bayespi-bar2bioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.3389/fgene.2019.00282", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/BayesPI-BAR2", "@type": "sc:SoftwareApplication", @@ -18,31 +22,27 @@ ], "sc:additionalType": "Command-line tool", "sc:citation": [ - "pubmed:31001324", "pmcid:PMC6454009", { "@id": "https://doi.org/10.3389/fgene.2019.00282" - } + }, + "pubmed:31001324" ], "sc:description": "Python Package for Predicting Functional Non-coding Mutations in Cancer Patient Cohorts.", "sc:featureList": [ { - "@id": "edam:operation_3202" + "@id": "edam:operation_0477" }, { - "@id": "edam:operation_0477" + "@id": "edam:operation_3202" } ], "sc:name": "BayesPI-BAR2", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://folk.uio.no/junbaiw/BayesPI-BAR2/" - }, - { - "@id": "https://doi.org/10.3389/fgene.2019.00282", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/bayessc/bayesscbioschemas.jsonld b/data/bayessc/bayesscbioschemas.jsonld index 7cd8e3e0568de..26bc8b044ac9f 100644 --- a/data/bayessc/bayesscbioschemas.jsonld +++ b/data/bayessc/bayesscbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "BayeSSC", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://www.stanford.edu/group/hadlylab/ssc/index.html" } \ No newline at end of file diff --git a/data/bayestyper/bayestyperbioschemas.jsonld b/data/bayestyper/bayestyperbioschemas.jsonld index 376f5622b7f7d..085492db650a9 100644 --- a/data/bayestyper/bayestyperbioschemas.jsonld +++ b/data/bayestyper/bayestyperbioschemas.jsonld @@ -18,8 +18,8 @@ "sc:description": "Perform genotyping of all types of variation (including SNPs, indels and complex structural variants) based on an input set of variants and read k-mer counts.", "sc:name": "BayesTyper", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://github.com/bioinformatics-centre/BayesTyper" } \ No newline at end of file diff --git a/data/baynorm/baynormbioschemas.jsonld b/data/baynorm/baynormbioschemas.jsonld index 5ffc45898ee87..7043697e93503 100644 --- a/data/baynorm/baynormbioschemas.jsonld +++ b/data/baynorm/baynormbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "bayNorm", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://bioconductor.org/packages/release/bioc/html/bayNorm.html" } \ No newline at end of file diff --git a/data/bayseq/bayseqbioschemas.jsonld b/data/bayseq/bayseqbioschemas.jsonld index 1f62da7384c99..a5353e73267ad 100644 --- a/data/bayseq/bayseqbioschemas.jsonld +++ b/data/bayseq/bayseqbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Thomas J. Hardcastle", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "This package identifies differential expression in high-throughput 'count' data, such as that derived from next-generation sequencing machines, calculating estimated posterior likelihoods of differential expression (or more complex hypotheses) via empirical Bayesian methods.", "sc:license": "GPL-3.0", diff --git a/data/bayz/bayzbioschemas.jsonld b/data/bayz/bayzbioschemas.jsonld index 28a4d6aeae686..4f057a4fcdb51 100644 --- a/data/bayz/bayzbioschemas.jsonld +++ b/data/bayz/bayzbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:license": "Proprietary", "sc:name": "Bayz", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://www.bayz.biz", diff --git a/data/bazam/bazambioschemas.jsonld b/data/bazam/bazambioschemas.jsonld index bbe24afb08738..a932b5ebbf424 100644 --- a/data/bazam/bazambioschemas.jsonld +++ b/data/bazam/bazambioschemas.jsonld @@ -9,28 +9,32 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1186/s13059-019-1688-1", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/Bazam", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Simon Sadedin", "sc:additionalType": "Command-line tool", "sc:citation": [ - "pmcid:PMC6472072", + "pubmed:30999943", { "@id": "https://doi.org/10.1186/s13059-019-1688-1" }, - "pubmed:30999943" + "pmcid:PMC6472072" ], "sc:description": "Method for read extraction and realignment of high-throughput sequencing data.", "sc:featureList": [ - { - "@id": "edam:operation_3198" - }, { "@id": "edam:operation_3192" }, { "@id": "edam:operation_3227" + }, + { + "@id": "edam:operation_3198" } ], "sc:license": "LGPL-2.1", @@ -40,10 +44,6 @@ "Mac" ], "sc:url": "https://github.com/ssadedin/bazam" - }, - { - "@id": "https://doi.org/10.1186/s13059-019-1688-1", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/bbcanalyzer/bbcanalyzerbioschemas.jsonld b/data/bbcanalyzer/bbcanalyzerbioschemas.jsonld index 5a13c2ec9d6b9..cb66d60dac8cf 100644 --- a/data/bbcanalyzer/bbcanalyzerbioschemas.jsonld +++ b/data/bbcanalyzer/bbcanalyzerbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Sarah Sandmann", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "This package visualizes the relative or absolute number of bases, deletions and insertions at defined positions in sequence alignment data available as bam files in comparison to the reference bases. Markers for the relative base frequencies, the mean quality of the detected bases, known mutations or polymorphisms and variants called in the data may additionally be included in the plots.", "sc:license": "GPL-3.0", "sc:name": "BBCAnalyzer", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BBCAnalyzer.html", "sc:version": "1.4.0" diff --git a/data/bbknn/bbknnbioschemas.jsonld b/data/bbknn/bbknnbioschemas.jsonld index d4c12308b71a3..bf303d8836ea1 100644 --- a/data/bbknn/bbknnbioschemas.jsonld +++ b/data/bbknn/bbknnbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "BBKNN", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/Teichlab/bbknn" } \ No newline at end of file diff --git a/data/bbmri-eu_catalog/bbmri-eu_catalogbioschemas.jsonld b/data/bbmri-eu_catalog/bbmri-eu_catalogbioschemas.jsonld index 65a75eb83cd10..c9e6e688cb4a4 100644 --- a/data/bbmri-eu_catalog/bbmri-eu_catalogbioschemas.jsonld +++ b/data/bbmri-eu_catalog/bbmri-eu_catalogbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "BBMRI-EU catalog", "sc:operatingSystem": [ "Windows", - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:provider": "TUM", "sc:url": "http://bbmri.eu" diff --git a/data/bbmri-nl_catalog/bbmri-nl_catalogbioschemas.jsonld b/data/bbmri-nl_catalog/bbmri-nl_catalogbioschemas.jsonld index 4b29552dbf69b..9a9e8bba86294 100644 --- a/data/bbmri-nl_catalog/bbmri-nl_catalogbioschemas.jsonld +++ b/data/bbmri-nl_catalog/bbmri-nl_catalogbioschemas.jsonld @@ -15,13 +15,13 @@ "sc:description": "Database of collections of biomaterial and associated data subsumed under the umbrella of BBMRI-NL.", "sc:name": "BBMRI-NL catalog", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:provider": [ - "VUMC", - "UGroningen" + "UGroningen", + "VUMC" ], "sc:url": "https://www.bbmri.nl/biobanks/bbmri-nl-catalogue/" } \ No newline at end of file diff --git a/data/bbmri-portal/bbmri-portalbioschemas.jsonld b/data/bbmri-portal/bbmri-portalbioschemas.jsonld index 0c2fb9a1203f6..7eec84c04e294 100644 --- a/data/bbmri-portal/bbmri-portalbioschemas.jsonld +++ b/data/bbmri-portal/bbmri-portalbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "A reference for scientists seeking information about biological samples and data suitable for their research.", "sc:name": "BBMRI-Portal", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:provider": "TUM", "sc:url": "https://www.bbmriportal.eu/bbmri2.0/jsp/core/login.jsf" diff --git a/data/bbseq/bbseqbioschemas.jsonld b/data/bbseq/bbseqbioschemas.jsonld index 89d3ec709a1df..5052d7eeea5e6 100644 --- a/data/bbseq/bbseqbioschemas.jsonld +++ b/data/bbseq/bbseqbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "An R package for analyzing RNA-Seq transcriptional count data.", "sc:name": "BBSeq", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://www.bios.unc.edu/research/genomic_software/BBSeq/" diff --git a/data/bc_snpmax/bc_snpmaxbioschemas.jsonld b/data/bc_snpmax/bc_snpmaxbioschemas.jsonld index 308114f978ca9..7ea5691eda1c2 100644 --- a/data/bc_snpmax/bc_snpmaxbioschemas.jsonld +++ b/data/bc_snpmax/bc_snpmaxbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:license": "Proprietary", "sc:name": "BC SNPmax", "sc:operatingSystem": [ - "Linux", "Windows", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://www.bcplatforms.com/" } \ No newline at end of file diff --git a/data/bcbio-nextgen/bcbio-nextgenbioschemas.jsonld b/data/bcbio-nextgen/bcbio-nextgenbioschemas.jsonld index 9cd452b221a29..bf3c5ce1a9174 100644 --- a/data/bcbio-nextgen/bcbio-nextgenbioschemas.jsonld +++ b/data/bcbio-nextgen/bcbio-nextgenbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "Bcbio-nextgen", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/chapmanb/bcbb/blob/master/nextgen/README.md" } \ No newline at end of file diff --git a/data/bcbiornaseq/bcbiornaseqbioschemas.jsonld b/data/bcbiornaseq/bcbiornaseqbioschemas.jsonld index af1021a96ffd1..7da1a88ad1f05 100644 --- a/data/bcbiornaseq/bcbiornaseqbioschemas.jsonld +++ b/data/bcbiornaseq/bcbiornaseqbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:license": "MIT", "sc:name": "bcbioRNASeq", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://bioinformatics.sph.harvard.edu/bcbioRNASeq/", "sc:version": "0.2.5" diff --git a/data/bcbtoolkit/bcbtoolkitbioschemas.jsonld b/data/bcbtoolkit/bcbtoolkitbioschemas.jsonld index e59e08e431bb6..52b8be53b3eca 100644 --- a/data/bcbtoolkit/bcbtoolkitbioschemas.jsonld +++ b/data/bcbtoolkit/bcbtoolkitbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "BSD-3-Clause", "sc:name": "BCBtoolkit", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://toolkit.bcblab.com/" } \ No newline at end of file diff --git a/data/bcepred/bcepredbioschemas.jsonld b/data/bcepred/bcepredbioschemas.jsonld index 2c98e94e1747f..7cd6606fb241f 100644 --- a/data/bcepred/bcepredbioschemas.jsonld +++ b/data/bcepred/bcepredbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "The BcePred server predicts B cell epitope based on physio-chemical properties of amino acids.", "sc:name": "BcePred", "sc:operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "sc:url": "http://www.imtech.res.in/raghava/bcepred/" } \ No newline at end of file diff --git a/data/bcf-tools-cat/bcf-tools-catbioschemas.jsonld b/data/bcf-tools-cat/bcf-tools-catbioschemas.jsonld index 7ded171fba2f0..b7090cfb3f5a8 100644 --- a/data/bcf-tools-cat/bcf-tools-catbioschemas.jsonld +++ b/data/bcf-tools-cat/bcf-tools-catbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Concatenate BCF files.", "sc:name": "bcf-tools-cat", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://www.htslib.org/", "sc:version": "1.0.0" diff --git a/data/bcf-tools-index/bcf-tools-indexbioschemas.jsonld b/data/bcf-tools-index/bcf-tools-indexbioschemas.jsonld index da93afd498967..7b560cd667d62 100644 --- a/data/bcf-tools-index/bcf-tools-indexbioschemas.jsonld +++ b/data/bcf-tools-index/bcf-tools-indexbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "This tool allows the user to index sorted BCF for random access.", "sc:name": "bcf-tools-index", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://www.htslib.org/", "sc:version": "1.0.0" diff --git a/data/bcf_view_mpileup/bcf_view_mpileupbioschemas.jsonld b/data/bcf_view_mpileup/bcf_view_mpileupbioschemas.jsonld index d41730159124d..f5803e150cdd7 100644 --- a/data/bcf_view_mpileup/bcf_view_mpileupbioschemas.jsonld +++ b/data/bcf_view_mpileup/bcf_view_mpileupbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "bcf_view_mpileup", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://www.htslib.org/", "sc:version": "1.0.2" diff --git a/data/bcftools/bcftoolsbioschemas.jsonld b/data/bcftools/bcftoolsbioschemas.jsonld index fdcaf62c4a39b..8205daf228e84 100644 --- a/data/bcftools/bcftoolsbioschemas.jsonld +++ b/data/bcftools/bcftoolsbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "MIT", "sc:name": "bcftools", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:provider": "sanger.ac.uk", "sc:url": "http://www.htslib.org/", diff --git a/data/bcheck_rnpb/bcheck_rnpbbioschemas.jsonld b/data/bcheck_rnpb/bcheck_rnpbbioschemas.jsonld index 80e105a051294..fa69aa27244cb 100644 --- a/data/bcheck_rnpb/bcheck_rnpbbioschemas.jsonld +++ b/data/bcheck_rnpb/bcheck_rnpbbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0001-8683-7845", - "@type": "schema:Person" - }, { "@id": "https://doi.org/10.1186/1471-2164-11-432", "@type": "sc:CreativeWork" @@ -30,9 +26,9 @@ "@id": "edam:data_3496" }, "sc:additionalType": [ + "Database portal", "Command-line tool", - "Web application", - "Database portal" + "Web application" ], "sc:applicationSubCategory": { "@id": "edam:topic_0114" @@ -41,29 +37,29 @@ "@id": "http://orcid.org/0000-0001-8683-7845" }, "sc:citation": [ - "pubmed:20626900", - "pmcid:PMC2996960", { "@id": "https://doi.org/10.1186/1471-2164-11-432" - } + }, + "pmcid:PMC2996960", + "pubmed:20626900" ], "sc:contributor": [ - "Ivo Hofacker", - "Austrian GEN-AU projects \"bioinformatics integration network III\"" + "Austrian GEN-AU projects \"bioinformatics integration network III\"", + "Ivo Hofacker" ], "sc:description": "Wrapper tool for rnpB gene prediction by combining speed of rnabob descriptor model and sensitivity of infernal covariance model.", "sc:featureList": [ { - "@id": "edam:operation_0346" + "@id": "edam:operation_0489" }, { - "@id": "edam:operation_0362" + "@id": "edam:operation_0349" }, { - "@id": "edam:operation_0349" + "@id": "edam:operation_0346" }, { - "@id": "edam:operation_0489" + "@id": "edam:operation_0362" } ], "sc:funder": "Austrian GEN-AU projects \"bioinformatics integration network III\"", @@ -78,6 +74,10 @@ "@id": "http://rna.tbi.univie.ac.at/bcheck/help.html" }, "sc:url": "http://rna.tbi.univie.ac.at/bcheck/index.html" + }, + { + "@id": "http://orcid.org/0000-0001-8683-7845", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/bcigepred/bcigepredbioschemas.jsonld b/data/bcigepred/bcigepredbioschemas.jsonld index f57c63e063c4c..723d0b331a0a2 100644 --- a/data/bcigepred/bcigepredbioschemas.jsonld +++ b/data/bcigepred/bcigepredbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://orcid.org/0000-0001-5145-0384", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/BCIgEPred", "@type": "sc:SoftwareApplication", @@ -22,10 +26,6 @@ "sc:name": "BCIgEPred", "sc:operatingSystem": "Linux", "sc:url": "https://github.com/brsaran/BCIgePred" - }, - { - "@id": "https://orcid.org/0000-0001-5145-0384", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/bcl/bclbioschemas.jsonld b/data/bcl/bclbioschemas.jsonld index bacc234fa8050..b7949b96c926c 100644 --- a/data/bcl/bclbioschemas.jsonld +++ b/data/bcl/bclbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "Bio Chemical Library is a software package that provides unique tools for biological research, such as protein structure determination from sparse experimental data.", "sc:name": "BCL", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://www.meilerlab.org/research/show/w_text_id/92" } \ No newline at end of file diff --git a/data/bcm/bcmbioschemas.jsonld b/data/bcm/bcmbioschemas.jsonld index 7ea9524292ca7..e69214cf16b21 100644 --- a/data/bcm/bcmbioschemas.jsonld +++ b/data/bcm/bcmbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "MPL-2.0", "sc:name": "BCM", "sc:operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "sc:url": "http://ccb.nki.nl/software/bcm/" } \ No newline at end of file diff --git a/data/bcm_srchlausequtl/bcm_srchlausequtlbioschemas.jsonld b/data/bcm_srchlausequtl/bcm_srchlausequtlbioschemas.jsonld index 800e6f2b7d2e4..d41dccb829ece 100644 --- a/data/bcm_srchlausequtl/bcm_srchlausequtlbioschemas.jsonld +++ b/data/bcm_srchlausequtl/bcm_srchlausequtlbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "BCM Search Launcher Sequence Utilities", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://searchlauncher.bcm.tmc.edu/seq-util/seq-util.html" } \ No newline at end of file diff --git a/data/bcode/bcodebioschemas.jsonld b/data/bcode/bcodebioschemas.jsonld index 8c0949b0efa9b..5943709fe3862 100644 --- a/data/bcode/bcodebioschemas.jsonld +++ b/data/bcode/bcodebioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/bcode", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Alessandro Cassini", - "Edoardo Colzani" + "Edoardo Colzani", + "Alessandro Cassini" ], "sc:additionalType": "Desktop application", "sc:description": "Stand-alone software application which allows calculation of disability-adjusted life years (DALYs) for a selection of 32 communicable diseases and six healthcare-associated infections.", diff --git a/data/bcov/bcovbioschemas.jsonld b/data/bcov/bcovbioschemas.jsonld index ec1a808405989..f55554030b403 100644 --- a/data/bcov/bcovbioschemas.jsonld +++ b/data/bcov/bcovbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Prediction of β-sheet topology.", "sc:name": "BCov", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:provider": "ELIXIR-ITA-BOLOGNA", "sc:url": "http://biocomp.unibo.it/savojard/bcov/index.html", diff --git a/data/bcrank/bcrankbioschemas.jsonld b/data/bcrank/bcrankbioschemas.jsonld index 65a09a7261c7d..d1a64f33f4b76 100644 --- a/data/bcrank/bcrankbioschemas.jsonld +++ b/data/bcrank/bcrankbioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "GPL-2.0", "sc:name": "BCRANK", "sc:operatingSystem": [ - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BCRANK.html", "sc:version": "1.36.0" diff --git a/data/bcrgt/bcrgtbioschemas.jsonld b/data/bcrgt/bcrgtbioschemas.jsonld index b5887fb3bac68..c72af30cba81a 100644 --- a/data/bcrgt/bcrgtbioschemas.jsonld +++ b/data/bcrgt/bcrgtbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "BCRgt is a Bayesian Cluster Regression based genotyping approach to genotype samples with Copy Number Alterations (CNAs). This is motivated by the facts that cancer tissues often have large regions of genetic structural alterations such as CNAs, and that researchers have been interested in genotyping SNPs from such samples.", "sc:name": "BCRgt", "sc:operatingSystem": [ - "Windows", + "Linux", "Mac", - "Linux" + "Windows" ], "sc:url": "http://publichealth.lsuhsc.edu/BCRgt.html", "sc:version": "1.0" diff --git a/data/bcrocsurface/bcrocsurfacebioschemas.jsonld b/data/bcrocsurface/bcrocsurfacebioschemas.jsonld index b97345afad5cb..dda2d842940a6 100644 --- a/data/bcrocsurface/bcrocsurfacebioschemas.jsonld +++ b/data/bcrocsurface/bcrocsurfacebioschemas.jsonld @@ -9,20 +9,24 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "https://doi.org/10.1186/s12859-017-1914-3", + "@type": "sc:CreativeWork" + }, { "@id": "https://bio.tools/bcrocsurface", "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Khanh To Duc", "sc:additionalType": [ - "Web application", - "Library" + "Library", + "Web application" ], "sc:citation": [ - "pubmed:29151019", { "@id": "https://doi.org/10.1186/s12859-017-1914-3" }, - "pmcid:PMC5694622" + "pmcid:PMC5694622", + "pubmed:29151019" ], "sc:description": "Correcting verification bias in estimation of the ROC surface and its volume for continuous diagnostic tests.", "sc:featureList": { @@ -31,15 +35,11 @@ "sc:license": "GPL-2.0", "sc:name": "bcROCsurface", "sc:operatingSystem": [ - "Windows", "Mac", + "Windows", "Linux" ], "sc:url": "https://khanhtoduc.shinyapps.io/bcROCsurface_shiny/" - }, - { - "@id": "https://doi.org/10.1186/s12859-017-1914-3", - "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/bcseq_bias/bcseq_biasbioschemas.jsonld b/data/bcseq_bias/bcseq_biasbioschemas.jsonld index f25f569ca3335..2432335984bfc 100644 --- a/data/bcseq_bias/bcseq_biasbioschemas.jsonld +++ b/data/bcseq_bias/bcseq_biasbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "Tool for quantifying gene expression from single cell RNA-seq.", "sc:name": "BCseq (bias-corrected sequencing analysis)", "sc:operatingSystem": [ - "Mac", "Linux", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://www-rcf.usc.edu/~liangche/software.html" } \ No newline at end of file diff --git a/data/bdbm/bdbmbioschemas.jsonld b/data/bdbm/bdbmbioschemas.jsonld index 4b7208eded618..f50f3989e8657 100644 --- a/data/bdbm/bdbmbioschemas.jsonld +++ b/data/bdbm/bdbmbioschemas.jsonld @@ -18,9 +18,9 @@ "sc:license": "GPL-3.0", "sc:name": "BLAST DataBase Manager", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://www.sing-group.org/BDBM", "sc:version": "1.0.2" diff --git a/data/bdvis/bdvisbioschemas.jsonld b/data/bdvis/bdvisbioschemas.jsonld index 580415ae89be8..089322349c539 100644 --- a/data/bdvis/bdvisbioschemas.jsonld +++ b/data/bdvis/bdvisbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "bdvis", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "https://cran.r-project.org/web/packages/bdvis/index.html" } \ No newline at end of file diff --git a/data/beachmat/beachmatbioschemas.jsonld b/data/beachmat/beachmatbioschemas.jsonld index 27ae83ab887c1..965763635009f 100644 --- a/data/beachmat/beachmatbioschemas.jsonld +++ b/data/beachmat/beachmatbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "GPL-3.0", "sc:name": "beachmat", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/beachmat.html" } \ No newline at end of file diff --git a/data/beacon/beaconbioschemas.jsonld b/data/beacon/beaconbioschemas.jsonld index a4671716a2cd0..da284eba3d995 100644 --- a/data/beacon/beaconbioschemas.jsonld +++ b/data/beacon/beaconbioschemas.jsonld @@ -22,23 +22,23 @@ { "@id": "https://doi.org/10.1186/S12864-015-1826-4" }, - "pubmed:26283419", - "pmcid:PMC4539851" + "pmcid:PMC4539851", + "pubmed:26283419" ], "sc:description": "Automated tool for Bacterial GEnome Annotation ComparisON.", "sc:featureList": [ { - "@id": "edam:operation_0362" + "@id": "edam:operation_3209" }, { - "@id": "edam:operation_3209" + "@id": "edam:operation_0362" } ], "sc:name": "BEACON", "sc:operatingSystem": [ - "Linux", "Windows", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://www.cbrc.kaust.edu.sa/BEACON/" } diff --git a/data/beacon_designer/beacon_designerbioschemas.jsonld b/data/beacon_designer/beacon_designerbioschemas.jsonld index 61d259455041e..bdaf5f451ad06 100644 --- a/data/beacon_designer/beacon_designerbioschemas.jsonld +++ b/data/beacon_designer/beacon_designerbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Beacon Designer™ automates the design of real time primers and probes. It is used by molecular biologists worldwide to design successful real time PCR assays. It saves the time and the money involved in failed experiments. Beacon Designer™ is a flexible solution to your real time primer and probe design needs and pays for itself many times over.", "sc:name": "Beacon Designer", "sc:operatingSystem": [ - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://www.premierbiosoft.com/molecular_beacons/index.html", "sc:version": "8.14" diff --git a/data/beaconlab_pscan/beaconlab_pscanbioschemas.jsonld b/data/beaconlab_pscan/beaconlab_pscanbioschemas.jsonld index bb688cb50b632..9e68d3b236c61 100644 --- a/data/beaconlab_pscan/beaconlab_pscanbioschemas.jsonld +++ b/data/beaconlab_pscan/beaconlab_pscanbioschemas.jsonld @@ -11,20 +11,20 @@ "@id": "https://bio.tools/beaconlab_pscan", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Giulio Pavesi", - "Federico Zambelli" + "Federico Zambelli", + "Giulio Pavesi" ], "sc:additionalType": [ - "Web application", - "Command-line tool" + "Command-line tool", + "Web application" ], "sc:description": "Software tool that scans a set of sequences (e.g. promoters) from co-regulated or co-expressed genes with motifs describing the binding specificity of known transcription factors and assesses which motifs are significantly over- or under-represented, providing thus hints on which transcription factors could be common regulators of the genes studied, together with the location of their candidate binding sites in the sequences", "sc:license": "GPL-3.0", "sc:name": "Pscan", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:provider": "ELIXIR-ITA-MILANO", "sc:url": "http://www.beaconlab.it/pscan", diff --git a/data/beadarray/beadarraybioschemas.jsonld b/data/beadarray/beadarraybioschemas.jsonld index 0afbdc92dc2d4..008b4d0b4f8a8 100644 --- a/data/beadarray/beadarraybioschemas.jsonld +++ b/data/beadarray/beadarraybioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "http://orcid.org/0000-0002-8853-9435", - "@type": "schema:Person" - }, { "@id": "https://bio.tools/beadarray", "@type": "sc:SoftwareApplication", @@ -20,8 +16,8 @@ "@id": "http://orcid.org/0000-0002-8853-9435" }, "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:citation": "pubmed:17586828", "sc:description": "The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.", @@ -29,11 +25,15 @@ "sc:name": "beadarray", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/beadarray.html", "sc:version": "2.24.0" + }, + { + "@id": "http://orcid.org/0000-0002-8853-9435", + "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/beadarraysnp/beadarraysnpbioschemas.jsonld b/data/beadarraysnp/beadarraysnpbioschemas.jsonld index c59460b51cb01..8b8e9900b84b3 100644 --- a/data/beadarraysnp/beadarraysnpbioschemas.jsonld +++ b/data/beadarraysnp/beadarraysnpbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Jan Oosting", "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:citation": "pubmed:17586828", "sc:description": "Importing data from Illumina SNP experiments and performing copy number calculations and reports.", @@ -21,8 +21,8 @@ "sc:name": "beadarraySNP", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/beadarraySNP.html", "sc:version": "1.40.0" diff --git a/data/beaddatapackr/beaddatapackrbioschemas.jsonld b/data/beaddatapackr/beaddatapackrbioschemas.jsonld index 35d12b6a622be..020e79abe77b9 100644 --- a/data/beaddatapackr/beaddatapackrbioschemas.jsonld +++ b/data/beaddatapackr/beaddatapackrbioschemas.jsonld @@ -9,6 +9,10 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ + { + "@id": "http://orcid.org/0000-0002-7800-3848", + "@type": "schema:Person" + }, { "@id": "https://bio.tools/beaddatapackr", "@type": "sc:SoftwareApplication", @@ -16,8 +20,8 @@ "@id": "http://orcid.org/0000-0002-7800-3848" }, "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:citation": [ "pmcid:PMC2956622", @@ -27,16 +31,12 @@ "sc:license": "GPL-2.0", "sc:name": "BeadDataPackR", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BeadDataPackR.html", "sc:version": "1.26.0" - }, - { - "@id": "http://orcid.org/0000-0002-7800-3848", - "@type": "schema:Person" } ] } \ No newline at end of file diff --git a/data/beads/beadsbioschemas.jsonld b/data/beads/beadsbioschemas.jsonld index 57e114f9220ca..c84bf6e61959c 100644 --- a/data/beads/beadsbioschemas.jsonld +++ b/data/beads/beadsbioschemas.jsonld @@ -11,9 +11,9 @@ "@id": "https://bio.tools/beads", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Thomas Down", "Nicole Cheung", - "Julie Ahringer" + "Julie Ahringer", + "Thomas Down" ], "sc:additionalType": "Command-line tool", "sc:citation": "pubmed:21646344", diff --git a/data/beam/beambioschemas.jsonld b/data/beam/beambioschemas.jsonld index 8567a21efe2ad..f8c1a99929a1a 100644 --- a/data/beam/beambioschemas.jsonld +++ b/data/beam/beambioschemas.jsonld @@ -11,16 +11,16 @@ "@id": "https://bio.tools/beam", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Marco Pietrosanto", - "Contact List" + "Contact List", + "Marco Pietrosanto" ], "sc:additionalType": "Web application", "sc:description": "Analyze tens of thousands of RNA molecules and identify RNA secondary structure motifs associated to a measure of their statistical significance.", "sc:name": "BEAM", "sc:operatingSystem": [ + "Mac", "Windows", - "Linux", - "Mac" + "Linux" ], "sc:url": "http://beam.uniroma2.it/home" } \ No newline at end of file diff --git a/data/bean-counter/bean-counterbioschemas.jsonld b/data/bean-counter/bean-counterbioschemas.jsonld index 8652e688a94c5..79467644408fa 100644 --- a/data/bean-counter/bean-counterbioschemas.jsonld +++ b/data/bean-counter/bean-counterbioschemas.jsonld @@ -17,9 +17,9 @@ "sc:license": "BSD-3-Clause", "sc:name": "BEAN-counter", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "https://github.com/csbio/BEAN-counter" } \ No newline at end of file diff --git a/data/beap/beapbioschemas.jsonld b/data/beap/beapbioschemas.jsonld index e34fd33321314..28f8cee0a9759 100644 --- a/data/beap/beapbioschemas.jsonld +++ b/data/beap/beapbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "BEAP uses a short starting DNA fragment, often a EST or partial gene segment, as “primer”, to recursively blast nucleotide databases in an attempt to obtain all sequences that overlaps, directly or indirectly, with the “primer” therefore help to “extend” the length of the original sequence for constructing a “full length” sequence for functional analysis, or at least to obtain neighboring regions of the segment for SNP discovery and linkage disequilibrium analysis.", "sc:name": "BEAP", "sc:operatingSystem": [ - "Mac", "Windows", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://www.animalgenome.org/bioinfo/tools/beap/" } \ No newline at end of file diff --git a/data/bear/bearbioschemas.jsonld b/data/bear/bearbioschemas.jsonld index 1d996351dba1c..335f5c0bd901e 100644 --- a/data/bear/bearbioschemas.jsonld +++ b/data/bear/bearbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "RNA secondary structure analysis, comparison and classification, motif finding and phylogeny.", "sc:name": "BEAR Brand nEw Alphabet for RNA", "sc:operatingSystem": [ - "Mac", + "Windows", "Linux", - "Windows" + "Mac" ], "sc:provider": "ELIXIR-ITA-TORVERGATA", "sc:url": "http://bioinformatica.uniroma2.it/BEAR/BEAR_Encoder.zip", diff --git a/data/bearscc/bearsccbioschemas.jsonld b/data/bearscc/bearsccbioschemas.jsonld index 9534d9494a8b3..7a832f19e4b74 100644 --- a/data/bearscc/bearsccbioschemas.jsonld +++ b/data/bearscc/bearsccbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:license": "GPL-3.0", "sc:name": "BEARscc", "sc:operatingSystem": [ - "Windows", "Linux", - "Mac" + "Mac", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BEARscc.html", "sc:version": "1.0.0" diff --git a/data/beast/beastbioschemas.jsonld b/data/beast/beastbioschemas.jsonld index 02c7c654aa40c..071c38fd7aa74 100644 --- a/data/beast/beastbioschemas.jsonld +++ b/data/beast/beastbioschemas.jsonld @@ -14,9 +14,9 @@ "sc:description": "The Bayesian Evolutionary Analysis Sampling Trees is a cross-platform program for Bayesian analysis of molecular sequences using MCMC (Markov chain Monte Carlo). It is entirely orientated towards rooted, time-measured phylogenies inferred using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology.", "sc:name": "BEAST", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "http://beast.bio.ed.ac.uk/" } \ No newline at end of file diff --git a/data/beast2/beast2bioschemas.jsonld b/data/beast2/beast2bioschemas.jsonld index d820b9342129c..2ed62f6570ea8 100644 --- a/data/beast2/beast2bioschemas.jsonld +++ b/data/beast2/beast2bioschemas.jsonld @@ -18,18 +18,18 @@ ], "sc:citation": [ "pmcid:PMC3985171", - "pubmed:24722319", { "@id": "https://doi.org/10.1371/JOURNAL.PCBI.1003537" - } + }, + "pubmed:24722319" ], "sc:description": "Bayesian phylogenetic analysis of molecular sequences. It estimates rooted, time-measured phylogenies using strict or relaxed molecular clock models. It can be used as a method of reconstructing phylogenies but is also a framework for testing evolutionary hypotheses without conditioning on a single tree topology. It uses Markov chain Monte Carlo (MCMC) to average over tree space, so that each tree is weighted proportional to its posterior probability. It includes a graphical user-interface for setting up standard analyses and a suit of programs for analysing the results.", "sc:featureList": [ { - "@id": "edam:operation_3478" + "@id": "edam:operation_0551" }, { - "@id": "edam:operation_0551" + "@id": "edam:operation_3478" } ], "sc:name": "BEAST 2", diff --git a/data/beastling/beastlingbioschemas.jsonld b/data/beastling/beastlingbioschemas.jsonld index 9f7dad6671fe5..09efad9f42cc2 100644 --- a/data/beastling/beastlingbioschemas.jsonld +++ b/data/beastling/beastlingbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Open source software tool designed to simplify the preparation of Bayesian phylogenetic analyses of linguistic data using the BEAST 2 platform.", "sc:name": "BEASTling", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://github.com/glottobank/BEASTling_paper" } \ No newline at end of file diff --git a/data/beat/beatbioschemas.jsonld b/data/beat/beatbioschemas.jsonld index b4e869218e1f4..14cfa41d9daa6 100644 --- a/data/beat/beatbioschemas.jsonld +++ b/data/beat/beatbioschemas.jsonld @@ -19,8 +19,8 @@ "sc:license": "GPL-3.0", "sc:name": "BEAT", "sc:operatingSystem": [ - "Mac", "Linux", + "Mac", "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BEAT.html", diff --git a/data/beatmusic/beatmusicbioschemas.jsonld b/data/beatmusic/beatmusicbioschemas.jsonld index a42b2f2341a26..496e35dc4fcdb 100644 --- a/data/beatmusic/beatmusicbioschemas.jsonld +++ b/data/beatmusic/beatmusicbioschemas.jsonld @@ -11,19 +11,19 @@ "@id": "https://bio.tools/beatmusic", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Jean Marc Kwasigroch", "Marianne Rooman", "Yves Dehouck", - "Dimitri Gilis" + "Dimitri Gilis", + "Jean Marc Kwasigroch" ], "sc:additionalType": "Web application", "sc:citation": "pubmed:23723246", "sc:description": "This program evaluates the change in binding affinity between proteins (or protein chains) caused by single-site mutations in their sequence.", "sc:name": "BeAtMuSiC", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "http://babylone.ulb.ac.be/beatmusic" } \ No newline at end of file diff --git a/data/beatsonlab-microbialgenomics/beatsonlab-microbialgenomicsbioschemas.jsonld b/data/beatsonlab-microbialgenomics/beatsonlab-microbialgenomicsbioschemas.jsonld index 76e235ed0c27c..5803a78ba22be 100644 --- a/data/beatsonlab-microbialgenomics/beatsonlab-microbialgenomicsbioschemas.jsonld +++ b/data/beatsonlab-microbialgenomics/beatsonlab-microbialgenomicsbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Software to understand the molecular mechanisms of infectious disease and to identify therapeutic and diagnostic targets via NGS data.", "sc:name": "BeatsonLab-MicrobialGenomics", "sc:operatingSystem": [ - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:provider": "University of Queensland", "sc:url": "https://github.com/BeatsonLab-MicrobialGenomics" diff --git a/data/becas/becasbioschemas.jsonld b/data/becas/becasbioschemas.jsonld index 19ffb53d603ad..1f096810108d7 100644 --- a/data/becas/becasbioschemas.jsonld +++ b/data/becas/becasbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "BECAS", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://bioinformatics.ua.pt/software/becas/" } \ No newline at end of file diff --git a/data/beclear/beclearbioschemas.jsonld b/data/beclear/beclearbioschemas.jsonld index 0a92c2fd089f2..7a23b5a4f034a 100644 --- a/data/beclear/beclearbioschemas.jsonld +++ b/data/beclear/beclearbioschemas.jsonld @@ -20,8 +20,8 @@ "sc:name": "BEclear", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BEclear.html", "sc:version": "1.6.0" diff --git a/data/becon/beconbioschemas.jsonld b/data/becon/beconbioschemas.jsonld index efde29cb30054..ea2ac48b6987a 100644 --- a/data/becon/beconbioschemas.jsonld +++ b/data/becon/beconbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Interpreting DNA methylation findings from blood in the context of brain.", "sc:name": "BECon", "sc:operatingSystem": [ - "Windows", + "Mac", "Linux", - "Mac" + "Windows" ], "sc:url": "https://redgar598.shinyapps.io/BECon/" } \ No newline at end of file diff --git a/data/bed_bayesian/bed_bayesianbioschemas.jsonld b/data/bed_bayesian/bed_bayesianbioschemas.jsonld index 3088df5ad26ec..89b573e0a6559 100644 --- a/data/bed_bayesian/bed_bayesianbioschemas.jsonld +++ b/data/bed_bayesian/bed_bayesianbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Detection and comparison of epialleles within multiple tumour regions enables phylogenetic analyses, identification of differentially expressed epialleles, and provides a measure of epigenetic heterogeneity.", "sc:name": "Bayesian Epiallele Detection (BED)", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "https://github.com/james-e-barrett/bed" } \ No newline at end of file diff --git a/data/bedgraphtobigwig/bedgraphtobigwigbioschemas.jsonld b/data/bedgraphtobigwig/bedgraphtobigwigbioschemas.jsonld index 266b2977fda05..4a20ccc20392d 100644 --- a/data/bedgraphtobigwig/bedgraphtobigwigbioschemas.jsonld +++ b/data/bedgraphtobigwig/bedgraphtobigwigbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Convert bedGraph to bigWig file.", "sc:name": "bedGraphToBigWig", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:url": "https://www.encodeproject.org/software/bedgraphtobigwig/" } \ No newline at end of file diff --git a/data/bedtools/bedtoolsbioschemas.jsonld b/data/bedtools/bedtoolsbioschemas.jsonld index 309e204e2de9a..415784a5cdfc2 100644 --- a/data/bedtools/bedtoolsbioschemas.jsonld +++ b/data/bedtools/bedtoolsbioschemas.jsonld @@ -12,8 +12,8 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Bedtools Discussion Forum", "sc:additionalType": [ - "Command-line tool", - "Suite" + "Suite", + "Command-line tool" ], "sc:citation": "pubmed:20110278", "sc:description": "BEDTools is an extensive suite of utilities for comparing genomic features in BED format.", diff --git a/data/bedtools_bamtobed/bedtools_bamtobedbioschemas.jsonld b/data/bedtools_bamtobed/bedtools_bamtobedbioschemas.jsonld index 23fdb5cb97495..16270c73f1cc7 100644 --- a/data/bedtools_bamtobed/bedtools_bamtobedbioschemas.jsonld +++ b/data/bedtools_bamtobed/bedtools_bamtobedbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Convert a BAM file to a BED file. The end coordinate is computed by inspecting the CIGAR string. The QNAME for the alignment is used as the BED name field and, by default, the MAPQ is used as the BED score.", "sc:name": "bedtools_bamtobed", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "https://github.com/arq5x/bedtools2", diff --git a/data/bedtools_coveragebed_counts/bedtools_coveragebed_countsbioschemas.jsonld b/data/bedtools_coveragebed_counts/bedtools_coveragebed_countsbioschemas.jsonld index a99e1217d5517..b666ec9c17cf9 100644 --- a/data/bedtools_coveragebed_counts/bedtools_coveragebed_countsbioschemas.jsonld +++ b/data/bedtools_coveragebed_counts/bedtools_coveragebed_countsbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Count the number of intervals in a BAM or BED file (the source) that overlap another BED file (the target).", "sc:name": "bedtools_coveragebed_counts", "sc:operatingSystem": [ - "Mac", + "Linux", "Windows", - "Linux" + "Mac" ], "sc:url": "https://github.com/arq5x/bedtools3", "sc:version": "0.1.0" diff --git a/data/bedtools_genomecoveragebed_histogram/bedtools_genomecoveragebed_histogrambioschemas.jsonld b/data/bedtools_genomecoveragebed_histogram/bedtools_genomecoveragebed_histogrambioschemas.jsonld index 4d46a66173b5d..393208441cfed 100644 --- a/data/bedtools_genomecoveragebed_histogram/bedtools_genomecoveragebed_histogrambioschemas.jsonld +++ b/data/bedtools_genomecoveragebed_histogram/bedtools_genomecoveragebed_histogrambioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "bedtools_genomecoveragebed_histogram", "sc:operatingSystem": [ "Mac", - "Linux", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://github.com/arq5x/bedtools4", "sc:version": "0.1.0" diff --git a/data/bedtools_intersectbed/bedtools_intersectbedbioschemas.jsonld b/data/bedtools_intersectbed/bedtools_intersectbedbioschemas.jsonld index 386eed575a077..00d7749e42007 100644 --- a/data/bedtools_intersectbed/bedtools_intersectbedbioschemas.jsonld +++ b/data/bedtools_intersectbed/bedtools_intersectbedbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "Report overlaps between two feature files.", "sc:name": "bedtools_intersectbed", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "https://github.com/arq5x/bedtools6", diff --git a/data/bedtools_intersectbed_bam/bedtools_intersectbed_bambioschemas.jsonld b/data/bedtools_intersectbed_bam/bedtools_intersectbed_bambioschemas.jsonld index 02bb935e772bb..36f4c73f7b669 100644 --- a/data/bedtools_intersectbed_bam/bedtools_intersectbed_bambioschemas.jsonld +++ b/data/bedtools_intersectbed_bam/bedtools_intersectbed_bambioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "bedtools_intersectbed_bam", "sc:operatingSystem": [ "Linux", - "Windows", - "Mac" + "Mac", + "Windows" ], "sc:url": "https://github.com/arq5x/bedtools5", "sc:version": "0.1.0" diff --git a/data/bedtools_mergebedgraph/bedtools_mergebedgraphbioschemas.jsonld b/data/bedtools_mergebedgraph/bedtools_mergebedgraphbioschemas.jsonld index ae52c511479e4..5d8b6680b6822 100644 --- a/data/bedtools_mergebedgraph/bedtools_mergebedgraphbioschemas.jsonld +++ b/data/bedtools_mergebedgraph/bedtools_mergebedgraphbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:description": "Merge multiple BedGraph files, allowing direct and fine-scale coverage comparisons among many samples/files. The BedGraph files need not represent the same intervals; the tool will identify both common and file-specific intervals. In addition, the BedGraph values need not be numeric: one can use any text as the BedGraph value and the tool will compare the values from multiple files.", "sc:name": "bedtools_mergebedgraph", "sc:operatingSystem": [ + "Linux", "Windows", - "Mac", - "Linux" + "Mac" ], "sc:url": "https://github.com/arq5x/bedtools7", "sc:version": "0.1.0" diff --git a/data/bedtools_multiintersectbed/bedtools_multiintersectbedbioschemas.jsonld b/data/bedtools_multiintersectbed/bedtools_multiintersectbedbioschemas.jsonld index 19402a64bb0c3..b7d18ab15cd27 100644 --- a/data/bedtools_multiintersectbed/bedtools_multiintersectbedbioschemas.jsonld +++ b/data/bedtools_multiintersectbed/bedtools_multiintersectbedbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "bedtools_multiintersectbed", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "https://github.com/arq5x/bedtools8", "sc:version": "0.1.0" diff --git a/data/bedutils/bedutilsbioschemas.jsonld b/data/bedutils/bedutilsbioschemas.jsonld index 33e3780a0d3ea..31c497a48bfde 100644 --- a/data/bedutils/bedutilsbioschemas.jsonld +++ b/data/bedutils/bedutilsbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/bedutils", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Yunlong Liu", - "Marcus Breese" + "Marcus Breese", + "Yunlong Liu" ], "sc:additionalType": "Command-line tool", "sc:description": "Suite of software tools for working with next-generation sequencing datasets.", diff --git a/data/beere/beerebioschemas.jsonld b/data/beere/beerebioschemas.jsonld index e758b1cc34ac3..dd31b1ae60e8d 100644 --- a/data/beere/beerebioschemas.jsonld +++ b/data/beere/beerebioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1093/NAR/GKZ428", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/BEERE", "@type": "sc:SoftwareApplication", @@ -28,10 +24,10 @@ "sc:description": "Tool for Biomedical Entity Expansion, Ranking, and Exploration.", "sc:featureList": [ { - "@id": "edam:operation_2421" + "@id": "edam:operation_3280" }, { - "@id": "edam:operation_3280" + "@id": "edam:operation_2421" }, { "@id": "edam:operation_2422" @@ -45,6 +41,10 @@ "Windows" ], "sc:url": "http://discovery.informatics.uab.edu/beere/" + }, + { + "@id": "https://doi.org/10.1093/NAR/GKZ428", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/beetlebase/beetlebasebioschemas.jsonld b/data/beetlebase/beetlebasebioschemas.jsonld index 1afb7ac4d3cb9..29396c40638cf 100644 --- a/data/beetlebase/beetlebasebioschemas.jsonld +++ b/data/beetlebase/beetlebasebioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "The database contains genomic sequence scaffolds mapped to 10 linkage groups, genetic linkage maps, the official gene set, Reference Sequences from NCBI (RefSeq), predicted gene models, ESTs and whole-genome tiling array data representing several developmental stages. The database was reconstructed using the upgraded Generic Model Organism Database (GMOD) modules, it has been updated to provide more comprehensive genomic information for the red flour beetle Tribolium castaneum.", "sc:name": "BeetleBase", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "http://beetlebase.org/" } \ No newline at end of file diff --git a/data/bel_commons/bel_commonsbioschemas.jsonld b/data/bel_commons/bel_commonsbioschemas.jsonld index 88f08fa106696..6b64105252af9 100644 --- a/data/bel_commons/bel_commonsbioschemas.jsonld +++ b/data/bel_commons/bel_commonsbioschemas.jsonld @@ -15,9 +15,9 @@ "sc:license": "MIT", "sc:name": "BEL Commons", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "https://bel-commons.scai.fraunhofer.de/" } \ No newline at end of file diff --git a/data/benchmarker/benchmarkerbioschemas.jsonld b/data/benchmarker/benchmarkerbioschemas.jsonld index 10312791e8619..fc073be764cb7 100644 --- a/data/benchmarker/benchmarkerbioschemas.jsonld +++ b/data/benchmarker/benchmarkerbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1016/J.AJHG.2019.03.027", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/Benchmarker", "@type": "sc:SoftwareApplication", @@ -23,10 +19,10 @@ "sc:additionalType": "Command-line tool", "sc:citation": [ "pmcid:PMC6556976", - "pubmed:31056107", { "@id": "https://doi.org/10.1016/J.AJHG.2019.03.027" - } + }, + "pubmed:31056107" ], "sc:description": "Benchmarking gene and variant prioritization algorithms for GWAS data.", "sc:featureList": { @@ -35,11 +31,15 @@ "sc:license": "GPL-3.0", "sc:name": "Benchmarker", "sc:operatingSystem": [ + "Mac", "Linux", - "Windows", - "Mac" + "Windows" ], "sc:url": "https://github.com/RebeccaFine/benchmarker" + }, + { + "@id": "https://doi.org/10.1016/J.AJHG.2019.03.027", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/berex/berexbioschemas.jsonld b/data/berex/berexbioschemas.jsonld index ba3207d0133be..bdca855a4ced1 100644 --- a/data/berex/berexbioschemas.jsonld +++ b/data/berex/berexbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "BEReX is a new biomedical knowledge integration, search and exploration tool. BEReX integrates eight popular databases (STRING, DrugBank, KEGG, PhamGKB, BioGRID, GO, HPRD and MSigDB) and delineates an integrated network by combining the information available from these databases.", "sc:name": "BEReX", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://infos.korea.ac.kr/berex/", diff --git a/data/berkeley_phylogenomics_group/berkeley_phylogenomics_groupbioschemas.jsonld b/data/berkeley_phylogenomics_group/berkeley_phylogenomics_groupbioschemas.jsonld index 87dae13bba69b..16fc304a91b03 100644 --- a/data/berkeley_phylogenomics_group/berkeley_phylogenomics_groupbioschemas.jsonld +++ b/data/berkeley_phylogenomics_group/berkeley_phylogenomics_groupbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "The Berkeley Phylogenomics Group provides a series of web servers for phylogenomic analysis: classification of sequences to pre-computed families and subfamilies using the PhyloFacts Phylogenomic Encyclopedia, FlowerPower clustering of proteins sharing the same domain architecture, MUSCLE multiple sequence alignment, SATCHMO simultaneous alignment and tree construction, and SCI-PHY subfamily identification.", "sc:name": "Berkeley Phylogenomics Group", "sc:operatingSystem": [ + "Windows", "Mac", - "Linux", - "Windows" + "Linux" ], "sc:url": "http://phylogenomics.berkeley.edu/" } \ No newline at end of file diff --git a/data/besst/besstbioschemas.jsonld b/data/besst/besstbioschemas.jsonld index 9bf9750c0d732..f8e38e9bea3dd 100644 --- a/data/besst/besstbioschemas.jsonld +++ b/data/besst/besstbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "GPL-3.0", "sc:name": "BESST", "sc:operatingSystem": [ - "Linux", - "Mac" + "Mac", + "Linux" ], "sc:provider": "nada.su.se", "sc:url": "https://github.com/ksahlin/BESST", diff --git a/data/best_literature/best_literaturebioschemas.jsonld b/data/best_literature/best_literaturebioschemas.jsonld index bd407c30d16d7..8c081d636d4f9 100644 --- a/data/best_literature/best_literaturebioschemas.jsonld +++ b/data/best_literature/best_literaturebioschemas.jsonld @@ -22,8 +22,8 @@ { "@id": "https://doi.org/10.1371/JOURNAL.PONE.0164680" }, - "pmcid:PMC5070740", - "pubmed:27760149" + "pubmed:27760149", + "pmcid:PMC5070740" ], "sc:description": "Next-Generation Biomedical Entity Search Tool for Knowledge Discovery from Biomedical Literature.", "sc:featureList": { @@ -31,9 +31,9 @@ }, "sc:name": "BEST", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://best.korea.ac.kr/" } diff --git a/data/bestsel/bestselbioschemas.jsonld b/data/bestsel/bestselbioschemas.jsonld index 2a529466e8314..181451437f39e 100644 --- a/data/bestsel/bestselbioschemas.jsonld +++ b/data/bestsel/bestselbioschemas.jsonld @@ -11,17 +11,17 @@ "@id": "https://bio.tools/bestsel", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "András Micsonai", - "József Kardos" + "József Kardos", + "András Micsonai" ], "sc:additionalType": "Web application", "sc:citation": "pubmed:29893907", "sc:description": "Beta Structure Selection. Novel method for the secondary structure determination and fold recognition from protein circular dichroism spectra.", "sc:name": "BeStSel", "sc:operatingSystem": [ - "Linux", + "Windows", "Mac", - "Windows" + "Linux" ], "sc:url": "http://bestsel.elte.hu/information.php" } \ No newline at end of file diff --git a/data/betacavityweb/betacavitywebbioschemas.jsonld b/data/betacavityweb/betacavitywebbioschemas.jsonld index ae24095c19797..9313a83a6814a 100644 --- a/data/betacavityweb/betacavitywebbioschemas.jsonld +++ b/data/betacavityweb/betacavitywebbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "This software computes molecular voids and channels with guaranteed mathematical correctness and computational efficiency and also computes their geometrical properties.", "sc:name": "BetaCavityWeb", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://voronoi.hanyang.ac.kr/betacavityweb/" diff --git a/data/betaseq/betaseqbioschemas.jsonld b/data/betaseq/betaseqbioschemas.jsonld index bc717862130d8..591fb74d1d24e 100644 --- a/data/betaseq/betaseqbioschemas.jsonld +++ b/data/betaseq/betaseqbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "BETASEQ", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "https://yunliweb.its.unc.edu/betaseq/" } \ No newline at end of file diff --git a/data/betaserpentine/betaserpentinebioschemas.jsonld b/data/betaserpentine/betaserpentinebioschemas.jsonld index 72bd550a9e325..617d0ccabfbcb 100644 --- a/data/betaserpentine/betaserpentinebioschemas.jsonld +++ b/data/betaserpentine/betaserpentinebioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/BetaSerpentine", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Stanislav A. Bondarev", - "Andrey V. Kajava" + "Andrey V. Kajava", + "Stanislav A. Bondarev" ], "sc:additionalType": [ "Web application", @@ -22,8 +22,8 @@ "sc:license": "Other", "sc:name": "BetaSerpentine", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://bioinfo.montp.cnrs.fr/b-serpentine", diff --git a/data/betatpred/betatpredbioschemas.jsonld b/data/betatpred/betatpredbioschemas.jsonld index ef41f33a64667..73d46c102b866 100644 --- a/data/betatpred/betatpredbioschemas.jsonld +++ b/data/betatpred/betatpredbioschemas.jsonld @@ -16,9 +16,9 @@ "sc:description": "The server is developed for predicting ß-turns in a protein from the amino acid sequence. It allows the user * to predict turns in a protein using existing statistical algorithms. * to predict the type of ß-turn such as Type I, I', II, II', VI, VIII and non-specific i.e., advanced prediction. * to predict the consensus ß-turn in a protein.", "sc:name": "BetaTPred", "sc:operatingSystem": [ - "Linux", + "Mac", "Windows", - "Mac" + "Linux" ], "sc:url": "http://www.imtech.res.in/raghava/betatpred/" } \ No newline at end of file diff --git a/data/betatpred2/betatpred2bioschemas.jsonld b/data/betatpred2/betatpred2bioschemas.jsonld index 67ad8559af7c9..2884367553b44 100644 --- a/data/betatpred2/betatpred2bioschemas.jsonld +++ b/data/betatpred2/betatpred2bioschemas.jsonld @@ -11,17 +11,17 @@ "@id": "https://bio.tools/betatpred2", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Harpreet Kaur", - "Dr. G.P.S. Raghava" + "Dr. G.P.S. Raghava", + "Harpreet Kaur" ], "sc:additionalType": "Web application", "sc:citation": "pubmed:12592033", "sc:description": "The aim of this server is to predict beta turns in proteins from multiple alignment by using neural network from the given amino acid sequence. For beta turn prediction, it uses the position specific score matrices generated by PSI-BLAST and secondary structure predicted by PSIPRED.", "sc:name": "BetatPred2", "sc:operatingSystem": [ - "Linux", "Windows", - "Mac" + "Mac", + "Linux" ], "sc:url": "http://www.imtech.res.in/raghava/betatpred2/" } \ No newline at end of file diff --git a/data/betaturns/betaturnsbioschemas.jsonld b/data/betaturns/betaturnsbioschemas.jsonld index 6b9a658061910..efcae49d8be54 100644 --- a/data/betaturns/betaturnsbioschemas.jsonld +++ b/data/betaturns/betaturnsbioschemas.jsonld @@ -11,8 +11,8 @@ "@id": "https://bio.tools/betaturns", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Harpreet Kaur", - "Dr. G.P.S. Raghava" + "Dr. G.P.S. Raghava", + "Harpreet Kaur" ], "sc:additionalType": "Command-line tool", "sc:citation": "pubmed:15145798", diff --git a/data/betavoid/betavoidbioschemas.jsonld b/data/betavoid/betavoidbioschemas.jsonld index 113ce6681b508..5914241d579f5 100644 --- a/data/betavoid/betavoidbioschemas.jsonld +++ b/data/betavoid/betavoidbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:description": "This software recognizes molecular voids in the van der Waals surface or the Lee-Richards (solvent accessible) surface and computes their mass properties such the volume and the boundary area.", "sc:name": "BetaVoid", "sc:operatingSystem": [ - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://voronoi.hanyang.ac.kr/software.htm#BetaVoidWin" } \ No newline at end of file diff --git a/data/betaware/betawarebioschemas.jsonld b/data/betaware/betawarebioschemas.jsonld index 6c57cd97e55b0..f8802c6199620 100644 --- a/data/betaware/betawarebioschemas.jsonld +++ b/data/betaware/betawarebioschemas.jsonld @@ -20,8 +20,8 @@ "sc:name": "BetAware", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:provider": "ELIXIR-ITA-BOLOGNA", "sc:url": "http://betaware.biocomp.unibo.it/BetAware/default/index", diff --git a/data/bew/bewbioschemas.jsonld b/data/bew/bewbioschemas.jsonld index 55f0863eb5a6e..440854e03c534 100644 --- a/data/bew/bewbioschemas.jsonld +++ b/data/bew/bewbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:description": "Novel software workbench for the operation and analysis of Biofilms experimental data.", "sc:name": "BEW", "sc:operatingSystem": [ - "Linux", "Windows", + "Linux", "Mac" ], "sc:url": "http://sing.ei.uvigo.es/bew" diff --git a/data/bfptool/bfptoolbioschemas.jsonld b/data/bfptool/bfptoolbioschemas.jsonld index fefd953ed40b3..de937e101412d 100644 --- a/data/bfptool/bfptoolbioschemas.jsonld +++ b/data/bfptool/bfptoolbioschemas.jsonld @@ -9,10 +9,6 @@ "xsd": "http://www.w3.org/2001/XMLSchema#" }, "@graph": [ - { - "@id": "https://doi.org/10.1186/s13628-016-0033-2", - "@type": "sc:CreativeWork" - }, { "@id": "https://bio.tools/bfptool", "@type": "sc:SoftwareApplication", @@ -32,11 +28,15 @@ "sc:license": "GPL-3.0", "sc:name": "BFPtool", "sc:operatingSystem": [ - "Linux", "Mac", - "Windows" + "Windows", + "Linux" ], "sc:url": "https://github.com/smitdaniel/BFPtool" + }, + { + "@id": "https://doi.org/10.1186/s13628-016-0033-2", + "@type": "sc:CreativeWork" } ] } \ No newline at end of file diff --git a/data/bfrm/bfrmbioschemas.jsonld b/data/bfrm/bfrmbioschemas.jsonld index 358b35e86db9e..caa5b67d03372 100644 --- a/data/bfrm/bfrmbioschemas.jsonld +++ b/data/bfrm/bfrmbioschemas.jsonld @@ -14,8 +14,8 @@ "sc:description": "Software for Bayesian Factor Regression Models – modelling and analysis of sparse latent factor models use in applications in pathway analysis and predictive modelling with large-scale gene expression data sets, with links to studies in gene expression analysis.", "sc:name": "BFRM", "sc:operatingSystem": [ - "Windows", "Mac", + "Windows", "Linux" ], "sc:url": "http://www.stat.duke.edu/research/software/west/bfrm/", diff --git a/data/bgafun/bgafunbioschemas.jsonld b/data/bgafun/bgafunbioschemas.jsonld index face4a0115bb5..f6d2902436669 100644 --- a/data/bgafun/bgafunbioschemas.jsonld +++ b/data/bgafun/bgafunbioschemas.jsonld @@ -20,8 +20,8 @@ "sc:name": "bgafun", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/bgafun.html", "sc:version": "1.36.0" diff --git a/data/bgeedb/bgeedbbioschemas.jsonld b/data/bgeedb/bgeedbbioschemas.jsonld index a980d76278e28..cd20934365f71 100644 --- a/data/bgeedb/bgeedbbioschemas.jsonld +++ b/data/bgeedb/bgeedbbioschemas.jsonld @@ -11,19 +11,19 @@ "@id": "https://bio.tools/bgeedb", "@type": "sc:SoftwareApplication", "biotools:primaryContact": [ - "Frederic Bastian", - "Andrea Komljenovic" + "Andrea Komljenovic", + "Frederic Bastian" ], "sc:additionalType": [ - "Library", - "Command-line tool" + "Command-line tool", + "Library" ], "sc:description": "A package for the annotation and gene expression data download from Bgee database, and TopAnat analysis: GO-like enrichment of anatomical terms, mapped to genes by expression patterns.", "sc:license": "GPL-2.0", "sc:name": "BgeeDB", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BgeeDB.html", diff --git a/data/bgf/bgfbioschemas.jsonld b/data/bgf/bgfbioschemas.jsonld index 84c24a5f406d3..bdc0c109ddd7c 100644 --- a/data/bgf/bgfbioschemas.jsonld +++ b/data/bgf/bgfbioschemas.jsonld @@ -15,8 +15,8 @@ "sc:name": "BGF", "sc:operatingSystem": [ "Linux", - "Mac", - "Windows" + "Windows", + "Mac" ], "sc:url": "http://bgf.genomics.org.cn/", "sc:version": "1.01" diff --git a/data/bgmix/bgmixbioschemas.jsonld b/data/bgmix/bgmixbioschemas.jsonld index ab3394fe9b57b..8e2589cf2a5bd 100644 --- a/data/bgmix/bgmixbioschemas.jsonld +++ b/data/bgmix/bgmixbioschemas.jsonld @@ -19,9 +19,9 @@ "sc:license": "GPL-2.0", "sc:name": "BGmix", "sc:operatingSystem": [ + "Windows", "Linux", - "Mac", - "Windows" + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BGmix.html", "sc:version": "1.34.0" diff --git a/data/bgmut/bgmutbioschemas.jsonld b/data/bgmut/bgmutbioschemas.jsonld index 8958b6b23c56d..bfb79b5faff90 100644 --- a/data/bgmut/bgmutbioschemas.jsonld +++ b/data/bgmut/bgmutbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:name": "BGMUT", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://www.ncbi.nlm.nih.gov/projects/gv/rbc/xslcgi.fcgi?cmd=bgmut/home" } \ No newline at end of file diff --git a/data/bgsmtr/bgsmtrbioschemas.jsonld b/data/bgsmtr/bgsmtrbioschemas.jsonld index 91db30951782f..4969c5fc4adcd 100644 --- a/data/bgsmtr/bgsmtrbioschemas.jsonld +++ b/data/bgsmtr/bgsmtrbioschemas.jsonld @@ -16,8 +16,8 @@ "sc:license": "GPL-2.0", "sc:name": "bgsmtr", "sc:operatingSystem": [ - "Mac", "Windows", + "Mac", "Linux" ], "sc:url": "https://cran.r-project.org/web/packages/bgsmtr/index.html" diff --git a/data/bgx/bgxbioschemas.jsonld b/data/bgx/bgxbioschemas.jsonld index 5bad584baef8c..5b38ec3568b12 100644 --- a/data/bgx/bgxbioschemas.jsonld +++ b/data/bgx/bgxbioschemas.jsonld @@ -17,8 +17,8 @@ "sc:name": "bgx", "sc:operatingSystem": [ "Windows", - "Mac", - "Linux" + "Linux", + "Mac" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/bgx.html", "sc:version": "1.40.0" diff --git a/data/bhc/bhcbioschemas.jsonld b/data/bhc/bhcbioschemas.jsonld index c785af1890a25..b9c3eda2ccefd 100644 --- a/data/bhc/bhcbioschemas.jsonld +++ b/data/bhc/bhcbioschemas.jsonld @@ -12,16 +12,16 @@ "@type": "sc:SoftwareApplication", "biotools:primaryContact": "Rich Savage", "sc:additionalType": [ - "Command-line tool", - "Library" + "Library", + "Command-line tool" ], "sc:description": "This method performs bottom-up hierarchical clustering using a Dirichlet Process to model uncertainty in the data and a Bayesian model selection to decide at each step which clusters to merge. This avoids several limitations of traditional methods, for example how many clusters there should be and how to choose a principled distance metric. This implementation accepts multinomial (i.e. discrete, with 2+ categories) or time-series data.", "sc:license": "GPL-3.0", "sc:name": "BHC", "sc:operatingSystem": [ "Mac", - "Windows", - "Linux" + "Linux", + "Windows" ], "sc:url": "http://bioconductor.org/packages/release/bioc/html/BHC.html", "sc:version": "1.26.0" diff --git a/data/bhrcr/bhrcrbioschemas.jsonld b/data/bhrcr/bhrcrbioschemas.jsonld index 899aae8bacbc0..22cb95a5a53ee 100644 --- a/data/bhrcr/bhrcrbioschemas.jsonld +++ b/data/bhrcr/bhrcrbioschemas.jsonld @@ -19,19 +19,19 @@ "biotools:primaryContact": "Colin B. Fogarty