Include caption and footnotes in collapse_row output

[cstubben]

Include the caption and footnotes in collapsed table output

doc <- pmc_xml("PMC2231364")
x <- pmc_table(doc)
collapse_rows(x[1])
# new function or option above
collapse_table(x[1])
   table     row     text                                                                                                                 
   <chr>   <int>     <chr>       
 1 Table 1 Caption   Stress-responsive operons in Y. pestis predicted from microarray expression data                                                                                                      
 2 Table 1     1     subheading=Iron uptake or heme synthesis; Potential operon (r value)=yfeABCD operon* ...
 3 Table 1     2     subheading=Iron uptake or heme synthesis; Potential operon (r value)=hmuRSTUV operon ...
...
30 Table 1 Footnote  'r' represents the correlation coefficient of adjacent genes; '*' represent the defined...

[kcmtest]

So is it not possible to save table like this form only so that i can the tabular form is intact , you would ask me why i would like to keep as such..for example if in paper they have metadata about patient information lets say age gender then similar drug dosage i would like to append it for my downstream analysis or curation. The way you are combining the table is it possible to reverse it and get back the tabular form?

$PMC7372828
$PMC7372828$`Table 1`
# A tibble: 28 x 2
   X1                                                                 X2   
   <chr>                                                              <chr>
 1 AML with recurrent genetic abnormalities                           NA   
 2 AML with t(8;21)(q22;q22.1);RUNX1-RUNX1T1                          NA   
 3 AML with inv. (16)(p13.1q22) or t(16;16)(p13.1;q22);CBFB-MYH11     NA   
 4 APL with PML-RARA                                                  NA   
 5 AML with t(9;11)(p21.3;q23.3);MLLT3-KMT2A                          NA   
 6 AML with t(6;9)(p23;q34.1);DEK-NUP214                              NA   
 7 AML with inv. (3)(q21.3q26.2) or t(3;3)(q21.3;q26.2); GATA2, MECOM NA   
 8 AML (megakaryoblastic) with t(1;22)(p13.3;q13.3);RBM15-MKL1        NA   
 9 Provisional entity: AML with BCR-ABL1                              NA   
10 AML with mutated NPM1                                              NA   
# … with 18 more rows

[kcmtest]

https://stackoverflow.com/questions/56374683/write-list-of-lists-to-separate-csv-files
this is one of the way i found to write down the files from individual list I would be glad if you can incorporate such fucntion in your library then as an end user I would be really glad

[kcmtest]

how do i limit the search data? there is no option to define the date upper and lower limit to search ```
epmc_search(
query = NULL,
output = "parsed",
synonym = TRUE,
verbose = TRUE,
limit = 100,
sort = NULL
)

Is there a way i can do the same? set date limit and do the search?