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DESCRIPTION
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Package: GCIMS
Type: Package
Title: Pre-processing for GC-IMS data
Version: 0.1.1
Encoding: UTF-8
Date: 2024-04-29
Authors@R: c(
person(
given = "Sergio",
family = "Oller Moreno",
email = "[email protected]",
role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-8994-1549")
),
person(
given = "Celia",
family = "Mallafré Muro",
email = "[email protected]",
role = "aut",
comment = c(ORCID = "0000-0001-8247-1719")
),
person(
given = "Luis",
family = "Fernandez",
email = "[email protected]",
role = "aut",
comment = c(ORCID = "0000-0001-9790-6287")
),
person(
given = "Eduardo",
family = "Caballero Saldivar",
email = "[email protected]",
role = c("aut"),
comment = c(ORCID = "0000-0002-9698-0749")
),
person(
given = "Arnau",
family = "Blanco Borrego",
email = "[email protected]",
role = "aut",
comment = c(ORCID = "0000-0002-5287-7491")
),
person(
given = "Antonio",
family = "Pardo Matínez",
email = "[email protected]",
role = c("aut"),
comment = c(ORCID = "0000-0003-4369-544X")
),
person(
given = "Santiago",
family = "Marco Colás",
email = "[email protected]",
role = c("aut"),
comment = c(ORCID = "0000-0003-2663-2965")
),
person(
given = "Institute for Bioengineering of Catalonia",
role = "cph"
)
)
Description: A package for the analysis of ion mobility spectrometry (IMS)
measurements, as well as samples from multicapillary columns coupled with
IMS (MCC-IMS) and gas chromatography coupled to ion mobility
spectrometry (GC-IMS). The package provides a complete
workflow for the analysis, importing the data, preprocessing the spectra
as well as classification and regression techniques for the modelling of the spectra.
The package also includes visualization helpers, to represent topographic plots,
extracted and total ion chromatograms and IMS spectra.
Depends:
R(>= 4.3.0)
License: MIT + file LICENSE
Imports:
Biobase,
BiocParallel (>= 1.34),
BiocGenerics,
cli,
cluster,
digest,
dplyr (>= 1.0.2),
ggplot2 (>= 3.3.2),
glue,
MassSpecWavelet (>= 1.63.5),
mdendro,
methods,
ProtGenerics (>= 1.24.0),
ptw (>= 1.9-10),
purrr (>= 0.3.4),
R6,
reshape2 (>= 1.1.4),
rlang,
S4Vectors,
sgolay,
signal (>= 0.7-6),
stats (>= 4.0.2),
stringr,
tibble,
tidyr (>= 1.1.2),
utils (>= 4.0.2),
yaml
Suggests:
BiocStyle,
cowplot,
curl,
farver,
httr,
knitr,
labeling,
magick,
Matrix,
plotly,
png,
pow,
pracma,
rmarkdown,
scales,
testthat (>= 3.0.0),
viridisLite
biocViews: Software, Preprocessing, Visualization, Classification,
Cheminformatics, Metabolomics, DataImport
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
Remotes: sipss/pow