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[pull] main from mne-tools:main #243

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[pull] main from mne-tools:main #243

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@pull pull bot added the ⤵️ pull label Aug 10, 2024
pre-commit-ci bot and others added 28 commits August 12, 2024 23:18
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (#12783)
01a1c1e 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@larsoner
BUG: Fix bug with example (#12786)
c9f8ee2
@larsoner @autofix-ci
DOC: Fix headers (#12781)
ee64eba 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
@larsoner
MAINT: Iterate faster on credit [ci skip] (#12793)
450acb1
@larsoner
MAINT: Direct [ci skip]
05c6f3c
@larsoner
BUG: Fix bug [ci skip]
f98e2f8
@github-actions
MAINT: Update code credit
0969654
@larsoner
FIX: Fixes
df80fcc
@github-actions
MAINT: Update code credit (#12796)
e108241 
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
@larsoner
BUG: Fix bug with credit (#12797)
bf5173b
@larsoner @autofix-ci
MAINT: Update installers (#12798)
a82528d 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
@larsoner
MAINT: Apply UP038 (#12799)
362f933
@mscheltienne
Update hash and version of testing dataset (#12800)
de72aae
@mscheltienne
Add support for a Transform in the trans argument of the coregistrati…
dcd34d4 
…on GUI (#12801)
@pre-commit-ci @larsoner
[pre-commit.ci] pre-commit autoupdate (#12802)
966121b 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <[email protected]>
@mscheltienne @autofix-ci @larsoner
Add reader for ANT Neuro format (#12792)
ab69d3e 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <[email protected]>
@mscheltienne
Cast paths to string before saving to h5 (#12803)
223d4aa
@mscheltienne @larsoner
Cast fwd["info"] to mne.Info and fwd["src"] to mne.SourceSpaces when …
99dd0e1 
…loading a forward solution with h5io (#12804)

Co-authored-by: Eric Larson <[email protected]>
@AlexLepauvre @pre-commit-ci @larsoner
Sensor scales (#12805)
0aae72d 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <[email protected]>
@mscheltienne
Add missing @testing.requires_testing_data (#12813)
b1203ad
@sappelhoff
DOC: read_annotations also reads BDF and GDF (#12812)
08a3831
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (#12814)
20871ff 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@vferat @pre-commit-ci
@mscheltienne @larsoner
Return filenames on save (#12811)
bd8f9cb 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Mathieu Scheltienne <[email protected]>
Co-authored-by: Eric Larson <[email protected]>
Co-authored-by: Mathieu Scheltienne <[email protected]>
@larsoner @drammock
MAINT: Fix bugs with code credit and linking (#12820)
13852f5 
Co-authored-by: Daniel McCloy <[email protected]>
@mscheltienne
[MRG] Fix missing safety around device_info field (#12815)
f27bac8
@proloyd @mscheltienne @larsoner
Improves functionality of ANT Neuro reader (#12810)
af19be0 
Co-authored-by: Mathieu Scheltienne <[email protected]>
Co-authored-by: Eric Larson <[email protected]>
@github-actions
MAINT: Update code credit (#12822)
346af6f 
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
@larsoner
MAINT: Fix for dipy deprecation (#12823)
e221c6c
leorochael and others added 30 commits November 14, 2024 14:12
@leorochael @larsoner
Add BaseRaw.duration property and fix duration calculation for BaseRa…
060b600 
…w "repr/html" display (#12955)

Co-authored-by: Eric Larson <[email protected]>
@larsoner
BUG: Fix bug with anonymization (#12967)
d810cc5
@scott-huberty
FIX: gracefully handle bad patient info in edf reader (#12968)
ede7f01
@larsoner @autofix-ci
ENH: Fine calibration support for more MEG systems (#12966)
f45b51b 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
@dependabot
Bump codecov/codecov-action from 4 to 5 in the actions group (#12970)
a267b86 
Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
@cbrnr
Use uint16_codec argument (#12971)
aa9dcb6
@sappelhoff
DOC: fix note in legacy pick_channels func (#12973)
5a1f3a0
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (#12975)
eac7199 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@sappelhoff
DOC: specify tmax_raw param may be None, and what it means (#12972)
cf8047f
@sappelhoff @larsoner
DOC: add meegkit to related software suite (#12976)
a99aa9f 
Co-authored-by: Eric Larson <[email protected]>
@JacPhe
Changed epochs_clean_sub = model_plain.apply(epochs) to epochs_clean_…
149453c 
…sub = model_sub.apply(epochs), making use of the regression coefficients from model_sub. #12977 (#12978)
@sappelhoff
DOC: fix numpy docstr example Vectorizer() (#12983)
f5d043a
@sappelhoff
do not log about using set_montage AGAIN if it has never been used (#…
57076c9 
…12984)
@ZiyiTsang @pre-commit-ci
Fix: update cnt.py to check missing annotation (#12986)
98f9949 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@pre-commit-ci @mscheltienne @larsoner
[pre-commit.ci] pre-commit autoupdate (#12988)
535b401 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Mathieu Scheltienne <[email protected]>
Co-authored-by: Eric Larson <[email protected]>
@larsoner
MAINT: Unpin VTK (#12991)
e06873d
@github-actions
MAINT: Update code credit (#12998)
096243f 
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
@dependabot @larsoner
Bump autofix-ci/action from dd55f44df8f7cdb7a6bf74c78677eb8acd40cd0a …
ed2fd8d 
…to ff86a557419858bb967097bfc916833f5647fa8c in the actions group (#12999)

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <[email protected]>
@sappelhoff
use eegbci.standardize instead of custom code (#12997)
0e09163
@sappelhoff
remove some ._filenames uses in favor of .filenames (#12996)
ec77e7c
@sappelhoff
DOC: fix return value doc of inst.get_montage() (#12995)
d987c27
@drammock @larsoner
pin selenium and stop filtering its warning (#13000)
53792b1 
Co-authored-by: Eric Larson <[email protected]>
@drammock @britta-wstnr
update governance (#12896)
a1a05ae 
Co-authored-by: Britta Westner <[email protected]>
@larsoner @autofix-ci @sappelhoff
ENH: Add round-trip channel name saving (#13003)
7071a0e 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
Co-authored-by: Stefan Appelhoff <[email protected]>
@withmywoessner @pre-commit-ci @larsoner
Fix cnt response (#13007)
d47c22f 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <[email protected]>
@sappelhoff
expose transform_to_head in API docs (#13010)
4967ecd
@pre-commit-ci @larsoner
[pre-commit.ci] pre-commit autoupdate (#13001)
b19ac58 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <[email protected]>
@pre-commit-ci
[pre-commit.ci] pre-commit autoupdate (#13017)
b3eb56c 
Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
@ruuskas
[BUG] Fix simple documentation bug (#13020)
730358c
@larsoner @autofix-ci @graingert
MAINT: Audit CIs using zizmor (#13011)
b329515 
Co-authored-by: autofix-ci[bot] <114827586+autofix-ci[bot]@users.noreply.github.com>
Co-authored-by: Thomas Grainger <[email protected]>
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