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b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd new file mode 100644 index 000000000..b49fe923a --- /dev/null +++ b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd @@ -0,0 +1,103 @@ +--- +title: "CmdStan Tarball Builder" +author: "Stan Development Team" +date: 2-22-2020 +output: + html_document: default + pdf_document: default +--- + +## Introduction + +The CmdStan tarball builder Github Action can be used to automatically build a +portable (mac/linux/windows) cmdstan tarball from a combination of cmdstan, +stanc, stanc3, and math Github branches. The goal of this Github Action is to +make it easier to share experimental Stan work. + +The two basic steps to use the CmdStan tarball builder, are building and +distributing. The Github action will handle the building part. Github releases +are useful for the distributing part, and make it so that the custom CmdStan +can be used directly in [cmdstanr](https://mc-stan.org/cmdstanr/). + +## Building the CmdStan tarball + +To use the CmdStan tarball builder Github Action, + +1. Fork a copy of the [cmdstan repository](https://github.com/stan-dev/cmdstan). +The **Fork** button is in the upper right hand corner of the page. If you already +have a fork of cmdstan, make sure your cmdstan fork is up to date with the +latest `stan-dev/cmdstan` develop branch. + + ![](make_fork.png) + +2. Navigate to the Github Actions page. The **Actions** button is at the top of +the page below the repository title + + ![](select_actions.png) + +3. Select the **CmdStan tarball builder** Github action from the workflows on the +left hand side of the page. + + ![](select_tarball_builder.png) + +4. Click the **Run workflow** dropdown button on the right hand side of the page. + + ![](run_workflow.png) + +5. Fill in a name for the custom CmdStan you are building along with the Github +repository names and branches from which you want to build it. There should be +a **Run Workflow** button at the bottom of this form that will start the +calculation. + +Github should forward you to a status page for the action. It may take an hour +or so to build the binaries, but once they are finished, there should be an +appropriately named artifact available to download. + +## Distributing the CmdStan Tarball + +The two drawbacks to the Github Actions artifact outputs are that the output is +not easily downloaded (the artifact download link does not work when it is +copy-pasted), and the tarball is compressed in a zip file (which is slightly +inconvenient). + +Github releases are useful for overcoming these difficulties. To do a Github +release of your development CmdStan, + +1. Download the CmdStan artifact and unzip it. + +2. Create a new Github release. There should be a link for this on the right +hand side of the page under **Releases** + + ![](create_release.png) + +3. Specify a tag, name your release, and add a description of what makes your +CmdStan special. There should be a link at the bottom to upload a file. Upload +the unzipped tarball from the first step (leave it as a `.tgz` file -- don't +uncompress it to a folder). + + ![](attach_file.png) + +4. Once the file finishes uploading click **Publish release**. You should be +redirected to the release page which will have a shareable link to the uploaded +tarball. + +## Sharing Installation Instructions + +With the Github release, it should be possible for CmdStan users to download +the tarball directly from the release page and use it and for `cmdstanr` users +to use the `install_cmdstan` command with a custom `release_url`. + +For instance, if the final release url is `https://github.com/stan-dev/cmdstan/releases/download/v2.26.1/cmdstan-2.26.1.tar.gz`, +then a cmdstanr user can install it with: + +``` +install_cmdstan(release_url = "https://github.com/stan-dev/cmdstan/releases/download/v2.26.1/cmdstan-2.26.1.tar.gz") +``` + +It may also be useful to build a custom cmdstanr (if the custom CmdStan has +different arguments). This can be done by pointing `devtools::install_github` at +the appropriate repository and branch: + +``` +devtools::install_github("https://github.com/stan-dev/cmdstanr/tree/develop") +``` diff --git a/knitr/cmdstan-tarball-builder/create_release.png b/knitr/cmdstan-tarball-builder/create_release.png new file mode 100644 index 0000000000000000000000000000000000000000..51a9bcddc08ce18c3e717f01293f44087f67dff2 GIT binary patch literal 25862 zcmc$F1yCJbu;u^(LeKE!0ce?uo%gah2f57_y006S&H&I0Zfbw|T*WN?FQI?UfR^I*)?7nF@ z002t&KRZ+`Eeie{5#CW!Mht!%8Vi}8pn>4z>l=yCTv^>w#Mau{*v9eg6aYj(#y=d5 zjYyo$9nDB2BxU4{7>wZofCP{f{i^J;c$Dg_JvH~xCrBkpk|ZQk&@bPKWJj(|yCGEX z1CxnaoYmvoVnKM#V~@Jn7~)o=S_W2zWW+V1)%PG{ba#w@Kcf^ugu?azQ~ib7_X|~< zU?R~+-`*W@VCPMl%MA=7g8eU*4xbjdgW*bs zWSz`$9eTL|%7w!-b~U*&ox)CGu;eND_ULhO)}SYDy7fI4k3uOs1}hjn zk^z;7y(xD%THjv!j=*FSks^JJb+^ha;a}ws?S!8y?I}(z8vEh_Y)5P@-q(YOh-kMDvb zHa7N)2YYK`Z7|8+<7@*$WDzaXzETMdjc3U(ySyJp0AP|O7>`P7XbJ$T>YB>8-{C9R 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zcs)V1V$f9cZXP&&^}fwIk|({U5HdcK(3l2l^^eRr@9EsEWOIl{AXq_5GcpbL%}8!M znXZwO*(FCWn(&n_V@id~7ENFP66U;O>-PNZw zjIjav$&VJndi9-0;IM4b4nep?~@ zVJwGJ5`P+EC~!Rhb<+=y7X*hDZ==l*vIQiygjuP(ypSm`g-c@NzvR!9PkLnh-D`2+!daay0EpKExVNUoQa`K9OBf9)NUfLuC_;Va4zi$;#L53zIU>JN#!il8^3Y|^xPJJ8`W&UZOrxsZFBsm> zt~$MMvQEmm&`%rLdmF=?A%lNubTg%*Z75E<`qzu(olvS?ZkL5Qvar9gs;Mu)e`3o0 zORA+t6LupUi>s~rTyrx%KSj6|rX(X*L(6BQ&U4J|vnQ?T+Pyu}Q ziJ71hpN{B)tC5cnsNZFw3r!B^Mka`Bh#n2CUsR2!c3}r+TA*kjy-@AoptcZOFnPrv z0JsKi;H+BsFw6qM9Sj*NW%t}-k1Fi+45}nG8O%ep^-OApL^3^;)KrceTii8@;ef?W zcp%Zaz447I^`7dXk?-~Ehz4vf0Duq)W6=g|a<(@z0{~hKfGZ;aK$;2wu*mw?@mKWk y;-67k&R-&} Date: Mon, 22 Feb 2021 10:10:59 -0500 Subject: [PATCH 2/6] Few edits --- .../cmdstan-tarball-builder.Rmd | 26 +++++++++---------- 1 file changed, 13 insertions(+), 13 deletions(-) diff --git a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd index b49fe923a..4bd0992c7 100644 --- a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd +++ b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd @@ -10,11 +10,11 @@ output: ## Introduction The CmdStan tarball builder Github Action can be used to automatically build a -portable (mac/linux/windows) cmdstan tarball from a combination of cmdstan, -stanc, stanc3, and math Github branches. The goal of this Github Action is to -make it easier to share experimental Stan work. +portable (mac/linux/windows) CmdStan tarball from a combination of `cmdstan`, +`stanc`, `stanc3`, and `math` Github branches. The goal of this Github Action is +to make it easier to share experimental Stan work. -The two basic steps to use the CmdStan tarball builder, are building and +The two basic steps to use the CmdStan tarball builder are building and distributing. The Github action will handle the building part. Github releases are useful for the distributing part, and make it so that the custom CmdStan can be used directly in [cmdstanr](https://mc-stan.org/cmdstanr/). @@ -46,11 +46,10 @@ left hand side of the page. 5. Fill in a name for the custom CmdStan you are building along with the Github repository names and branches from which you want to build it. There should be -a **Run Workflow** button at the bottom of this form that will start the -calculation. +a **Run Workflow** button at the bottom of this form that will start the build. Github should forward you to a status page for the action. It may take an hour -or so to build the binaries, but once they are finished, there should be an +or so to build the binaries, but once they are finished there should be an appropriately named artifact available to download. ## Distributing the CmdStan Tarball @@ -73,7 +72,7 @@ hand side of the page under **Releases** 3. Specify a tag, name your release, and add a description of what makes your CmdStan special. There should be a link at the bottom to upload a file. Upload the unzipped tarball from the first step (leave it as a `.tgz` file -- don't -uncompress it to a folder). +untar it to a folder). ![](attach_file.png) @@ -84,17 +83,18 @@ tarball. ## Sharing Installation Instructions With the Github release, it should be possible for CmdStan users to download -the tarball directly from the release page and use it and for `cmdstanr` users -to use the `install_cmdstan` command with a custom `release_url`. +the tarball directly from the release page and use it. R users can use the +`cmdstanr::install_cmdstan` command with a custom `release_url` to use the +custom CmdStan. For instance, if the final release url is `https://github.com/stan-dev/cmdstan/releases/download/v2.26.1/cmdstan-2.26.1.tar.gz`, -then a cmdstanr user can install it with: +then a `cmdstanr` user can install it with: ``` -install_cmdstan(release_url = "https://github.com/stan-dev/cmdstan/releases/download/v2.26.1/cmdstan-2.26.1.tar.gz") +cmdstanr::install_cmdstan(release_url = "https://github.com/stan-dev/cmdstan/releases/download/v2.26.1/cmdstan-2.26.1.tar.gz") ``` -It may also be useful to build a custom cmdstanr (if the custom CmdStan has +It may also be useful to build a custom `cmdstanr` (if the custom CmdStan has different arguments). This can be done by pointing `devtools::install_github` at the appropriate repository and branch: From 2779e6730ab637ebf15b6855b284f7ef38a738f4 Mon Sep 17 00:00:00 2001 From: Ben Bales Date: Mon, 22 Feb 2021 12:14:07 -0500 Subject: [PATCH 3/6] Update knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Rok Češnovar --- knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd index 4bd0992c7..b82a1ccff 100644 --- a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd +++ b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd @@ -10,7 +10,7 @@ output: ## Introduction The CmdStan tarball builder Github Action can be used to automatically build a -portable (mac/linux/windows) CmdStan tarball from a combination of `cmdstan`, +portable (MacOS/Linux/Windows) CmdStan tarball from a combination of `cmdstan`, `stanc`, `stanc3`, and `math` Github branches. The goal of this Github Action is to make it easier to share experimental Stan work. From c22013c490fa1cda31d53c3a60359da3a4bf2dca Mon Sep 17 00:00:00 2001 From: Ben Bales Date: Mon, 22 Feb 2021 12:14:22 -0500 Subject: [PATCH 4/6] Update knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Rok Češnovar --- knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd index b82a1ccff..bb82c17f0 100644 --- a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd +++ b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd @@ -23,7 +23,7 @@ can be used directly in [cmdstanr](https://mc-stan.org/cmdstanr/). To use the CmdStan tarball builder Github Action, -1. Fork a copy of the [cmdstan repository](https://github.com/stan-dev/cmdstan). +1. Fork a copy of the [CmdStan repository](https://github.com/stan-dev/cmdstan). The **Fork** button is in the upper right hand corner of the page. If you already have a fork of cmdstan, make sure your cmdstan fork is up to date with the latest `stan-dev/cmdstan` develop branch. From 4fbcd773f754b44433f7a2711b0fbdde0287da27 Mon Sep 17 00:00:00 2001 From: Ben Bales Date: Mon, 22 Feb 2021 12:14:55 -0500 Subject: [PATCH 5/6] Update knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Rok Češnovar --- knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd index bb82c17f0..eb46912db 100644 --- a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd +++ b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd @@ -71,7 +71,7 @@ hand side of the page under **Releases** 3. Specify a tag, name your release, and add a description of what makes your CmdStan special. There should be a link at the bottom to upload a file. Upload -the unzipped tarball from the first step (leave it as a `.tgz` file -- don't +the unzipped tarball from the first step (leave it as a `.tar.gz` file -- don't untar it to a folder). ![](attach_file.png) From 21de669c8f965b30bd8264c10acc7718b9fc5874 Mon Sep 17 00:00:00 2001 From: Ben Bales Date: Mon, 22 Feb 2021 12:15:03 -0500 Subject: [PATCH 6/6] Update knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Co-authored-by: Rok Češnovar --- knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd index eb46912db..e45849eb6 100644 --- a/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd +++ b/knitr/cmdstan-tarball-builder/cmdstan-tarball-builder.Rmd @@ -99,5 +99,5 @@ different arguments). This can be done by pointing `devtools::install_github` at the appropriate repository and branch: ``` -devtools::install_github("https://github.com/stan-dev/cmdstanr/tree/develop") +devtools::install_github("stan-dev/cmdstanr@develop") ```