🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

Phigaro is a scalable command-line tool for predicting phages and prophages

A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

A Snakemake workflow and MrBiomics module for easy visualization of genome browser tracks of aligned BAM files (e.g., RNA-seq, ATAC-seq, scRNA-seq, ...) powered by the wrapper gtracks for the package pyGenomeTracks, and IGV-reports.

Bedfile perturbation tool

ReMapEnrich is a R-software package to identify significantly enriched regions from ReMap catalogues or user defined catalogues. ReMapEnrich provide functions to import any in-house catalogue, automate and plot the enrichment analysis for genomic regions.

An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests

Thesaurus for genetic variants

Makefile for reference annotations for genes & genomic regions

C++ library for genomic region based storage and querying

The GSuite HyperBrowser - the new version of the Genomic HyperBrowser, currently forked from Galaxy v16.01

Very fast and efficient detection of multiple overlaps between genomic regions. For details on the algorithm and the implementation, please refer to the following publication: Aszódi, A. (2012): MULTOVL: Fast multiple overlaps of genomic regions. Bioinformatics 28: 3318-3319.

Filter fastq file based on bed regions

BedSect web server source code repository.

Repozitorijoje saugomi failai, implementuojantys R Shiny aplikaciją ir leidžiantys vertinti įkeltų genominių duomenų kokybę bei vykdyti biologines analizes.