📊 A universal enrichment tool for interpreting omics data
-
Updated
Nov 29, 2024 - R
#
kegg
Here are 57 public repositories matching this topic...
Data toolkits for processing NMR, MALDI MSI, MALDI single cell, Raman Spectroscopy, LC-MS and GC-MS raw data, chemoinformatics data analysis and data visualization.
visualbasic metabolomics mass-spectrometry chemoinformatics lc-ms lipidomics single-cell kegg maldi gc-ms r-sharp gcxgc raman-spectroscopy metadna mzkit ms-imaging ms-dial single-cell-metabolism
-
Updated
Dec 11, 2024 - Visual Basic .NET
PETAL (ParallEl paThways AnaLyzer): a Python tool for deep biological pathway analysis
-
Updated
Dec 28, 2022 - Python
KEGG Module Evaluation Tool
gem kegg metabolic-models metabolic-reconstruction gap-filling genome-scale-metabolic-model kegg-modules
-
Updated
Nov 15, 2023 - Python
An interactive radial tree for functional hierarchies and omics data visualization
-
Updated
Nov 22, 2022 - HTML
A parallel API crawler for the retrieval of Kyoto Encyclopedia of Genes and Genomes metabolic and genomics data.
-
Updated
Jul 22, 2023 - Python
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
gene-annotation gene-ontology pathways kegg pathway-analysis reactome kegg-pathway real-time-analytics enrichment-analysis real-time-processing functional-analysis kegg-gene gene-set-clustering
-
Updated
Oct 30, 2020 - Perl
Repository for R package MetQy (read related publication here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6247936/)
-
Updated
Jan 21, 2022 - R
A Java-based software for visualizing and translating the KEGG PATHWAY database. Conversion of KGML files into BioPAX, SBML, GraphML, GML, and various other formats.
-
Updated
Jun 26, 2023 - Java
A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries
visualization bioinformatics r web-application shiny-apps geneset-enrichment kegg kegg-pathway gsea geneset-enrichment-analysis
-
Updated
Jan 27, 2020 - R
Utilizing graphical neural networks and embeddings on a medical database KEGG to perform link predictions and drug similarity systems.
machine-learning neural-network graphs knowledge-graph kegg biomedical link-prediction graph-convolutional-networks graph-neural-networks ampligraph
-
Updated
Oct 2, 2021 - Jupyter Notebook
Build Annotation package by using information from KEGG, NCBI, Ensembl
-
Updated
May 4, 2023 - R
A comprehensive gene set function enrichment tool for multiple species.
-
Updated
Mar 23, 2020 - Shell
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
-
Updated
Feb 11, 2022 - Python
Library for KEGG pathway enrichment analysis
-
Updated
Dec 4, 2024 - Python
A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
visualization bioinformatics r shiny web-application shiny-apps geneset-enrichment kegg kegg-pathway over-representation-analysis
-
Updated
Jan 22, 2020 - R
Python wrapper for ipath3
-
Updated
Sep 27, 2023 - Jupyter Notebook
Improve this page
Add a description, image, and links to the kegg topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the kegg topic, visit your repo's landing page and select "manage topics."