diff --git a/test/configtest-F16.json b/test/configtest-F16.json index 1ccf0594..ecd72719 100644 --- a/test/configtest-F16.json +++ b/test/configtest-F16.json @@ -54,16 +54,16 @@ "version": "VER.SI.ON" }, "params": { - "BCFtools_version": "1.17", - "GATK_version": "4.5.0.0", - "MuSE_version": "2.0.4", + "BCFtools_version": "1.21", + "GATK_version": "4.6.1.0", + "MuSE_version": "2.1.2", "algorithm": [ "somaticsniper", "strelka2", "mutect2", "muse" ], - "bam_readcount_version": "0.8.0", + "bam_readcount_version": "1.0.1", "bgzip_extra_args": "", "bpg_version": "7.1.0", "cache_intermediate_pipeline_steps": false, @@ -71,10 +71,10 @@ "dataset_id": "TWGSAMIN", "dbSNP": "/hot/resource/database/dbSNP-155/original/GRCh38/GCF_000001405.39.gz", "docker_container_registry": "ghcr.io/uclahs-cds", - "docker_image_BCFtools": "ghcr.io/uclahs-cds/bcftools:1.17", - "docker_image_GATK": "broadinstitute/gatk:4.5.0.0", - "docker_image_MuSE": "ghcr.io/uclahs-cds/muse:2.0.4", - "docker_image_bam_readcount": "ghcr.io/uclahs-cds/bam-readcount:0.8.0", + "docker_image_BCFtools": "ghcr.io/uclahs-cds/bcftools:1.21", + "docker_image_GATK": "broadinstitute/gatk:4.6.1.0", + "docker_image_MuSE": "ghcr.io/uclahs-cds/muse:2.1.2", + "docker_image_bam_readcount": "ghcr.io/uclahs-cds/bam_readcount:1.0.1", "docker_image_bpg": "ghcr.io/uclahs-cds/boutroslabplottinggeneral:7.1.0", "docker_image_manta": "ghcr.io/uclahs-cds/manta:1.6.0", "docker_image_r_VennDiagram": "ghcr.io/uclahs-cds/call-ssnv-r:dev", @@ -82,7 +82,7 @@ "docker_image_src_util": "ghcr.io/uclahs-cds/src-util:1.2.0", "docker_image_strelka2": "ghcr.io/uclahs-cds/strelka2:2.9.10", "docker_image_ubuntu": "ubuntu:20.04", - "docker_image_validate_params": "ghcr.io/uclahs-cds/pipeval:4.0.0-rc.2", + "docker_image_validate_params": "ghcr.io/uclahs-cds/pipeval:5.1.0", "docker_image_vcf2maf": "ghcr.io/mskcc/vcf2maf/vcf2maf:v1.6.18", "exome": false, "filter_mutect_calls_extra_args": "", @@ -120,7 +120,7 @@ "output_dir_base": "/tmp/outputs/call-sSNV-VER.SI.ON/0192847", "panel_of_normals_vcf": "", "patient_id": "TWGSAMIN000001", - "pipeval_version": "4.0.0-rc.2", + "pipeval_version": "5.1.0", "proc_resource_params": { "call_sIndel_Manta": { "cpus": "6", diff --git a/test/configtest-F32.json b/test/configtest-F32.json index 1b0f883f..c9319c57 100644 --- a/test/configtest-F32.json +++ b/test/configtest-F32.json @@ -54,16 +54,16 @@ "version": "VER.SI.ON" }, "params": { - "BCFtools_version": "1.17", - "GATK_version": "4.5.0.0", - "MuSE_version": "2.0.4", + "BCFtools_version": "1.21", + "GATK_version": "4.6.1.0", + "MuSE_version": "2.1.2", "algorithm": [ "somaticsniper", "strelka2", "mutect2", "muse" ], - "bam_readcount_version": "0.8.0", + "bam_readcount_version": "1.0.1", "bgzip_extra_args": "", "bpg_version": "7.1.0", "cache_intermediate_pipeline_steps": false, @@ -71,10 +71,10 @@ "dataset_id": "TWGSAMIN", "dbSNP": "/hot/resource/database/dbSNP-155/original/GRCh38/GCF_000001405.39.gz", "docker_container_registry": "ghcr.io/uclahs-cds", - "docker_image_BCFtools": "ghcr.io/uclahs-cds/bcftools:1.17", - "docker_image_GATK": "broadinstitute/gatk:4.5.0.0", - "docker_image_MuSE": "ghcr.io/uclahs-cds/muse:2.0.4", - "docker_image_bam_readcount": "ghcr.io/uclahs-cds/bam-readcount:0.8.0", + "docker_image_BCFtools": "ghcr.io/uclahs-cds/bcftools:1.21", + "docker_image_GATK": "broadinstitute/gatk:4.6.1.0", + "docker_image_MuSE": "ghcr.io/uclahs-cds/muse:2.1.2", + "docker_image_bam_readcount": "ghcr.io/uclahs-cds/bam_readcount:1.0.1", "docker_image_bpg": "ghcr.io/uclahs-cds/boutroslabplottinggeneral:7.1.0", "docker_image_manta": "ghcr.io/uclahs-cds/manta:1.6.0", "docker_image_r_VennDiagram": "ghcr.io/uclahs-cds/call-ssnv-r:dev", @@ -82,7 +82,7 @@ "docker_image_src_util": "ghcr.io/uclahs-cds/src-util:1.2.0", "docker_image_strelka2": "ghcr.io/uclahs-cds/strelka2:2.9.10", "docker_image_ubuntu": "ubuntu:20.04", - "docker_image_validate_params": "ghcr.io/uclahs-cds/pipeval:4.0.0-rc.2", + "docker_image_validate_params": "ghcr.io/uclahs-cds/pipeval:5.1.0", "docker_image_vcf2maf": "ghcr.io/mskcc/vcf2maf/vcf2maf:v1.6.18", "exome": false, "filter_mutect_calls_extra_args": "", @@ -120,7 +120,7 @@ "output_dir_base": "/tmp/outputs/call-sSNV-VER.SI.ON/0192847", "panel_of_normals_vcf": "", "patient_id": "TWGSAMIN000001", - "pipeval_version": "4.0.0-rc.2", + "pipeval_version": "5.1.0", "proc_resource_params": { "call_sIndel_Manta": { "cpus": "8",