Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Merge simple edges in the assembly graph? #364

Open
schorlton opened this issue Nov 27, 2023 · 1 comment
Open

Merge simple edges in the assembly graph? #364

schorlton opened this issue Nov 27, 2023 · 1 comment

Comments

@schorlton
Copy link

Hi @voutcn and @aquaskyline,

I ran megahit 1.2.9 and got the following graph with megahit_toolkit contig2fastg 141 final.contigs.fa:
image

Note the contig subgraphs I have highlighted in the red boxes - can I safely merge these? I am uncertain why they would have been generated as separate contigs. Thanks!!
@schorlton
Copy link
Author

Also just stumbled across #184 which looks similar

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@schorlton