GeneCompass.yaml

name: GeneCompass
channels:
  - conda-forge
  - r
  - bioconda
  - defaults
dependencies:
  - _libgcc_mutex=0.1=main
  - _openmp_mutex=5.1=1_gnu
  - ca-certificates=2023.05.30=h06a4308_0
  - ld_impl_linux-64=2.38=h1181459_1
  - libffi=3.4.4=h6a678d5_0
  - libgcc-ng=11.2.0=h1234567_1
  - libgomp=11.2.0=h1234567_1
  - libstdcxx-ng=11.2.0=h1234567_1
  - ncurses=6.4=h6a678d5_0
  - openssl=3.0.9=h7f8727e_0
  - pip=23.1.2=py39h06a4308_0
  - python=3.9.16=h955ad1f_3
  - readline=8.2=h5eee18b_0
  - setuptools=67.8.0=py39h06a4308_0
  - sqlite=3.41.2=h5eee18b_0
  - tk=8.6.12=h1ccaba5_0
  - wheel=0.38.4=py39h06a4308_0
  - xz=5.4.2=h5eee18b_0
  - zlib=1.2.13=h5eee18b_0
  - pip:
      - absl-py==0.15.0
      - accelerate==0.20.3
      - aiohttp==3.8.4
      - aiosignal==1.3.1
      - anndata==0.9.1
      - appdirs==1.4.4
      - asttokens==2.2.1
      - astunparse==1.6.3
      - async-timeout==4.0.2
      - attrs==23.1.0
      - backcall==0.2.0
      - cachetools==5.3.2
      - certifi==2023.5.7
      - charset-normalizer==3.1.0
      - click==8.1.3
      - comm==0.1.3
      - contourpy==1.1.0
      - cycler==0.11.0
      - datasets==2.13.1
      - debugpy==1.6.7
      - decorator==5.1.1
      - deepxde==0.11.2
      - dill==0.3.6
      - docker-pycreds==0.4.0
      - executing==1.2.0
      - filelock==3.12.2
      - flatbuffers==1.12
      - fonttools==4.40.0
      - frozenlist==1.3.3
      - fsspec==2023.6.0
      - gast==0.4.0
      - gitdb==4.0.10
      - gitpython==3.1.38
      - google-auth==2.23.3
      - google-auth-oauthlib==0.4.6
      - google-pasta==0.2.0
      - grpcio==1.34.1
      - h5py==3.1.0
      - huggingface-hub==0.15.1
      - idna==3.4
      - importlib-metadata==6.7.0
      - importlib-resources==5.12.0
      - ipykernel==6.24.0
      - ipython==8.14.0
      - ipywidgets==8.0.6
      - jedi==0.18.2
      - joblib==1.3.1
      - jupyter-client==8.3.0
      - jupyter-core==5.3.1
      - jupyterlab-widgets==3.0.7
      - keras-nightly==2.5.0.dev2021032900
      - keras-preprocessing==1.1.2
      - kiwisolver==1.4.4
      - llvmlite==0.40.1
      - loompy==3.0.7
      - markdown==3.5
      - markupsafe==2.1.3
      - matplotlib==3.6.3
      - matplotlib-inline==0.1.6
      - multidict==6.0.4
      - multiprocess==0.70.14
      - natsort==8.4.0
      - nest-asyncio==1.5.6
      - networkx==3.1
      - numba==0.57.1
      - numpy==1.22.0
      - numpy-groupies==0.9.22
      - nvidia-cublas-cu11==11.10.3.66
      - nvidia-cuda-nvrtc-cu11==11.7.99
      - nvidia-cuda-runtime-cu11==11.7.99
      - nvidia-cudnn-cu11==8.5.0.96
      - oauthlib==3.2.2
      - opencv-python==4.7.0.72
      - opt-einsum==3.3.0
      - packaging==23.1
      - pandas==1.4.4
      - parso==0.8.3
      - pathtools==0.1.2
      - patsy==0.5.3
      - pexpect==4.8.0
      - pickleshare==0.7.5
      - pillow==9.5.0
      - platformdirs==3.8.0
      - prompt-toolkit==3.0.39
      - protobuf==3.20.3
      - psutil==5.9.5
      - ptyprocess==0.7.0
      - pure-eval==0.2.2
      - pyaml==23.9.7
      - pyarrow==12.0.1
      - pyasn1==0.5.0
      - pyasn1-modules==0.3.0
      - pygments==2.15.1
      - pynndescent==0.5.10
      - pyparsing==3.1.0
      - python-dateuti==0.1
      - python-dateutil==2.8.2
      - pytz==2023.3
      - pyyaml==6.0
      - pyzmq==25.1.0
      - rdkit==2023.3.2
      - regex==2023.6.3
      - requests==2.31.0
      - requests-oauthlib==1.3.1
      - rsa==4.9
      - safetensors==0.3.1
      - scanpy==1.9.3
      - scikit-learn==1.3.0
      - scikit-optimize==0.9.0
      - scipy==1.10.1
      - seaborn==0.12.2
      - sentry-sdk==1.32.0
      - session-info==1.0.0
      - setproctitle==1.3.3
      - six==1.15.0
      - smmap==5.0.1
      - stack-data==0.6.2
      - statsmodels==0.14.0
      - stdlib-list==0.9.0
      - tensorboard==2.11.2
      - tensorboard-data-server==0.6.1
      - tensorboard-plugin-wit==1.8.1
      - tensorflow==2.5.0
      - tensorflow-estimator==2.5.0
      - termcolor==1.1.0
      - threadpoolctl==3.1.0
      - tokenizers==0.13.3
      - torch==1.13.0
      - tornado==6.3.2
      - tqdm==4.65.0
      - traitlets==5.9.0
      - transformers==4.30.2
      - typing-extensions==3.7.4.3
      - tzdata==2023.3
      - umap-learn==0.5.3
      - urllib3==2.0.3
      - wandb==0.15.12
      - wcwidth==0.2.6
      - werkzeug==3.0.1
      - widgetsnbextension==4.0.7
      - wrapt==1.12.1
      - xxhash==3.2.0
      - yarl==1.9.2
      - zipp==3.15.0
# prefix: YourPath + /(miniconda3 or anaconda3:choose 1 of them)/envs/GeneCompass e.g. prefix: /home/miniconda3/envs/GeneCompass
prefix: /home/ict02/miniconda3/envs/GeneCompass