The output file label has been modified as requested in issue #7 #161
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Let's benefit from the occasion to shift this tools to artbio owner. Bump the version to 2.0.0 and change the owner in .shed.yml. This is the occasion to improve help I guess as all tools we are going to move to artbio owner. The idea is to release mississippi as a suite of artbio tools. |
Merge branch 'master' of https://github.com/ARTbio/tools-artbio into yac
Merge branch 'master' of https://github.com/ARTbio/tools-artbio into yac
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The tool should be ok. I changed the help too so that it follows the same patern as mircounts and others I saw |
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| **Inputs** | ||
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| 1. A fastq file of reads to be clipped |
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A fastq or fasta file of reads to be clipped
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in the xml the param has the format 'fastq' specified
tools/yac_clipper/yac.xml
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| 1. A fastq file of reads to be clipped | ||
| 2. Select the size of the reads to be kept | ||
| 3. Select an output format |
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Select an output format when input is a fastq file (this may be fastq or fasta)
tools/yac_clipper/yac.xml
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| 1. A fastq file of reads to be clipped | ||
| 2. Select the size of the reads to be kept | ||
| 3. Select an output format | ||
| 4. Select if you want the sequences containing unknown nucleotides to be kept |
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Select whether you wish or do not wish to keep clipped sequences with unknown nucleotides (N)
tools/yac_clipper/yac.xml
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| 3. Select an output format | ||
| 4. Select if you want the sequences containing unknown nucleotides to be kept | ||
| 5. Select the sequence of the adapter to clip either pre-built or custom | ||
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Select a pre-built adapter sequence or enter you own sequence (at least 7 nucleotides long)
tools/yac_clipper/yac.xml
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| **Output** | ||
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| A fastq or fasta file containing the sequences that satisfied the selected criteria with their adapters clipped. |
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A fastq or fasta file containing clipped sequences satisfying the selected criteria
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