Merge branch 'main' of github.com:AquaticEcoDynamics/glm-aed #172
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| # This is a basic workflow to help you get started with Actions | |
| name: Compile Mac, Ubuntu, Windows | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains four jobs called "macOS","ubuntu20", "ubuntu22" and "windows" | |
| ubuntu20: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-20.04 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Checkout submodules | |
| run: git submodule update --init --recursive | |
| # Runs a single command using the runners shell | |
| - name: Getting packages | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install libnetcdf-dev | |
| sudo apt-get install libgd3 | |
| sudo apt-get -y --allow-downgrades install libgd3=2.2.5-5.2ubuntu2.1 | |
| sudo apt-get install libgd-dev | |
| sudo apt-get install gfortran | |
| sudo apt-get install devscripts | |
| sudo apt-get install debhelper | |
| # Runs a set of commands using the runners shell | |
| - name: compile GLM | |
| run: | | |
| cd $GITHUB_WORKSPACE/glm-source | |
| chmod u+x ./admin/make_release_info.sh | |
| ./build_glm.sh | |
| mkdir -p $GITHUB_WORKSPACE/binaries/ubuntu/20.04 | |
| cp -r $GITHUB_WORKSPACE/glm-source/binaries/ubuntu/20.04/* $GITHUB_WORKSPACE/binaries/ubuntu/20.04/. | |
| - name: run GLM FCR | |
| run: | | |
| cd glm-examples/FCR | |
| $GITHUB_WORKSPACE/glm-source/GLM/glm | |
| - name: run GLM Woods | |
| run: | | |
| cd glm-examples/Woods | |
| $GITHUB_WORKSPACE/glm-source/GLM/glm | |
| - name: run GLM Sparkling | |
| run: | | |
| cd glm-examples/Sparkling | |
| $GITHUB_WORKSPACE/glm-source/GLM/glm | |
| - name: run GLM Gross Dhuenn | |
| run: | | |
| cd glm-examples/GrosseDhuenn | |
| $GITHUB_WORKSPACE/glm-source/GLM/glm | |
| - name: run GLM Lake Alex | |
| run: | | |
| cd glm-examples/LakeAlexandrina | |
| $GITHUB_WORKSPACE/glm-source/GLM/glm | |
| #- uses: r-lib/actions/setup-pandoc@v2 | |
| #- uses: r-lib/actions/setup-r@v2 | |
| #- uses: r-lib/actions/setup-renv@v2 | |
| #- name: Run test and generate plots | |
| # run: | | |
| # cd glm-examples | |
| # R -e 'source("install.R")' | |
| # R -e 'install.packages("rmarkdown")' | |
| # R -e 'rmarkdown::render("example_lakes.Rmd")' | |
| # mv $GITHUB_WORKSPACE/glm-examples/example_lakes.md $GITHUB_WORKSPACE/glm-examples/README.md | |
| - name: update binaries and push to remote | |
| run: | | |
| git config --global user.name "github-actions[bot]" | |
| git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git pull | |
| git add -A | |
| git commit -m "Update Ubuntu 20.04 binaries" | |
| git push | |
| ubuntu22: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-22.04 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Checkout submodules | |
| run: git submodule update --init --recursive | |
| # Runs a single command using the runners shell | |
| - name: Getting packages | |
| run: | | |
| sudo apt-get update -y | |
| sudo apt-get install libnetcdf-dev | |
| sudo apt-get install libgd3 | |
| sudo apt-get install libgd-dev | |
| sudo apt-get install gfortran | |
| sudo apt-get install devscripts | |
| sudo apt-get install debhelper | |
| # Runs a set of commands using the runners shell | |
| - name: compile GLM | |
| run: | | |
| cd $GITHUB_WORKSPACE/glm-source | |
| chmod u+x ./admin/make_release_info.sh | |
| ./build_glm.sh | |
| mkdir -p $GITHUB_WORKSPACE/binaries/ubuntu/22.04 | |
| cp -r $GITHUB_WORKSPACE/glm-source/binaries/ubuntu/22.04/* $GITHUB_WORKSPACE/binaries/ubuntu/22.04/. | |
| - name: update binaries and push to remote | |
| run: | | |
| git config --global user.name "github-actions[bot]" | |
| git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git pull | |
| git add -A | |
| git commit -m "Update Ubuntu 22.04 binaries" | |
| git push | |
| macOS-M: | |
| # The type of runner that the job will run on | |
| runs-on: macos-12 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Checkout submodules | |
| run: git submodule update --init --recursive | |
| - name: Install packages | |
| run: | | |
| brew reinstall gcc | |
| brew install netcdf | |
| brew install gd | |
| - name: compile GLM | |
| run: | | |
| cd $GITHUB_WORKSPACE/glm-source | |
| ./build_glm.sh | |
| MOSDIR=`grep 'SOFTWARE LICENSE AGREEMENT FOR ' '/System/Library/CoreServices/Setup Assistant.app/Contents/Resources/en.lproj/OSXSoftwareLicense.rtf' | awk -F 'macOS ' '{print $NF}' | tr -d '\\' | tr ' ' '_'` | |
| mkdir -p $GITHUB_WORKSPACE/binaries/macos/${MOSDIR} | |
| cp -r $GITHUB_WORKSPACE/glm-source/binaries/macos/${MOSDIR}/* $GITHUB_WORKSPACE/binaries/macos/${MOSDIR}/. | |
| - name: run GLM FCR | |
| run: | | |
| cd glm-examples/FCR | |
| echo now try running glm FCR | |
| $GITHUB_WORKSPACE/binaries/macos/Monterey/glm_latest/glm | |
| echo run completed | |
| - name: update binaries and push to remote | |
| run: | | |
| git config --global user.name "github-actions[bot]" | |
| git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git pull | |
| git add -A | |
| git commit -m "Update MacOS binaries" | |
| git push | |
| macOS-S: | |
| # The type of runner that the job will run on | |
| runs-on: macos-14 | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Checkout submodules | |
| run: git submodule update --init --recursive | |
| - name: Install packages | |
| run: | | |
| brew reinstall gcc | |
| brew install netcdf | |
| brew install gd | |
| - name: compile GLM | |
| run: | | |
| cd $GITHUB_WORKSPACE/glm-source | |
| ./build_glm.sh | |
| MOSDIR=`grep 'SOFTWARE LICENSE AGREEMENT FOR ' '/System/Library/CoreServices/Setup Assistant.app/Contents/Resources/en.lproj/OSXSoftwareLicense.rtf' | awk -F 'macOS ' '{print $NF}' | tr -d '\\' | tr ' ' '_'` | |
| mkdir -p $GITHUB_WORKSPACE/binaries/macos/${MOSDIR} | |
| cp -r $GITHUB_WORKSPACE/glm-source/binaries/macos/${MOSDIR}/* $GITHUB_WORKSPACE/binaries/macos/${MOSDIR}/. | |
| - name: run GLM FCR | |
| shell: bash | |
| run: | | |
| cd glm-examples/FCR | |
| MOSDIR=`grep 'SOFTWARE LICENSE AGREEMENT FOR ' '/System/Library/CoreServices/Setup Assistant.app/Contents/Resources/en.lproj/OSXSoftwareLicense.rtf' | awk -F 'macOS ' '{print $NF}' | tr -d '\\' | tr ' ' '_'` | |
| echo now try running glm for ${MOSDIR} | |
| $GITHUB_WORKSPACE/binaries/macos/Sonoma/glm_latest/glm | |
| echo run completed | |
| - name: update binaries and push to remote | |
| run: | | |
| git config --global user.name "github-actions[bot]" | |
| git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git pull | |
| git add -A | |
| git commit -m "Update MacOS binaries" | |
| git push | |
| windows: | |
| # The type of runner that the job will run on | |
| runs-on: windows-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Checkout submodules | |
| run: | | |
| git submodule update --init --recursive | |
| - name: Install packages | |
| run: | | |
| choco install make | |
| choco install mingw | |
| choco install git | |
| choco install cmake --installargs 'ADD_CMAKE_TO_PATH=System' | |
| - name: compile GLM | |
| shell: bash | |
| run: | | |
| cd $GITHUB_WORKSPACE/glm-source/ancillary/windows/Sources | |
| ./build_all.sh | |
| cd $GITHUB_WORKSPACE/glm-source | |
| ./build_glm.sh | |
| mkdir -p $GITHUB_WORKSPACE/binaries/windows | |
| cd $GITHUB_WORKSPACE/glm-source/binaries/windows | |
| cp -r * $GITHUB_WORKSPACE/binaries/windows | |
| - name: run GLM FCR | |
| shell: bash | |
| run: | | |
| cd glm-examples/FCR | |
| echo now try running glm | |
| $GITHUB_WORKSPACE/binaries/windows/glm_latest/glm.exe | |
| echo run completed | |
| - name: update binaries and push to remote | |
| run: | | |
| git config --global user.name "github-actions[bot]" | |
| git config --global user.email "41898282+github-actions[bot]@users.noreply.github.com" | |
| git pull | |
| git add -A | |
| git commit -m "Update Windows binaries" | |
| git push |