CoBrALab · zswgzx · May 17, 2021 · May 17, 2021 · May 25, 2021 · May 25, 2021
diff --git a/README.md b/README.md
@@ -18,7 +18,7 @@ to the final unbiased space are produced.
 
 # Input
 
-Input is a csv-formatted file with with one input NIFTI file per row for 1 level
+Input is a csv-formatted file with one input NIFTI file per row for 1 level
 model builds.
 
 For a 2 level modelbuild, each row must have 2 or more input files. Mixed level
@@ -31,6 +31,8 @@ by [CoBrALab/minc-bpipe-library](https://github.com/CobraLab/minc-bpipe-library)
 Skull stripped files produce better initial affine matches during registration and
 provide stronger features to SyN registration stages compared to unstripped files.
 
+(example input can be found in folder test/)
+
 ## Configuration
 
 Suggested configuration is to use a ``--rigid-model-target``, typically an MNI model,
@@ -85,6 +87,8 @@ or newer.
 
 # Full help
 
+(update required since some new options are not presented below)
+
 ```
 usage: twolevel_dbm.py [-h]
                        [--jacobian-sigmas JACOBIAN_SIGMAS [JACOBIAN_SIGMAS ...]]

diff --git a/requirements.txt b/requirements.txt
@@ -1,3 +1,3 @@
 tqdm
 pathos
-qbatch
+# qbatch, not sure why it's required
diff --git a/test/input-lv1.csv b/test/input-lv1.csv
@@ -0,0 +1,2 @@
+input/id01_1.nii.gz
+input/id02_1.nii.gz
diff --git a/test/input-lv2.csv b/test/input-lv2.csv
@@ -0,0 +1,2 @@
+input/id01_1.nii.gz,input/id01_2.nii.gz
+input/id02_1.nii.gz,input/id02_2.nii.gz
diff --git a/test/input/id01_1.nii.gz b/test/input/id01_1.nii.gz
diff --git a/test/input/id01_2.nii.gz b/test/input/id01_2.nii.gz
diff --git a/test/input/id02_1.nii.gz b/test/input/id02_1.nii.gz
diff --git a/test/input/id02_2.nii.gz b/test/input/id02_2.nii.gz
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		input/id01_1.nii.gz,input/id01_2.nii.gz
		input/id02_1.nii.gz,input/id02_2.nii.gz