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Merge pull request #83 from EMPD2/empd2_release
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EMPD2 release
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@Chilipp
Chilipp authored Oct 5, 2020
2 parents 5b20673 + fbdbf8e commit 737b76e
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799 changes: 799 additions & 0 deletions external/tarasov.tsv
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18,177 changes: 8,747 additions & 9,430 deletions meta.tsv
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5,702 changes: 4,817 additions & 885 deletions postgres/EMPD2.sql
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59 changes: 35 additions & 24 deletions postgres/scripts/import_into_empd2.py
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Original file line number Diff line number Diff line change
Expand Up @@ -333,27 +333,31 @@ def clean_doi(doi):
list_of_errors.append(str(e))
print('IntegrityError ', x, e)
err += 1
continue
except psql.DataError as e:
if str(e) not in list_of_errors:
list_of_errors.append(str(e))
print('DataError ', x, e)
conn = psql.connect(db_url)
cursor = conn.cursor()
err += 1
continue
except AttributeError as e:
if str(e) not in list_of_errors:
list_of_errors.append(str(e))
print('AttributeError ', x, e)
conn = psql.connect(db_url)
cursor = conn.cursor()
err += 1
continue
except Exception as e:
if str(e) not in list_of_errors:
list_of_errors.append(str(e))
print('Error ', x, e)
conn = psql.connect(db_url)
cursor = conn.cursor()
err += 1
continue

temperature = METADATA.iloc[x]['Temperature']
precip = METADATA.iloc[x]['Precipitation']
Expand Down Expand Up @@ -455,32 +459,39 @@ def clean_doi(doi):
conn.commit()
else:
VAR_ = res[0][0]
samplename = row.samplename
try:
if row['count'] > 0:
val = round(row['count'])
try:
try:
if row['count'] > 0:
val = round(row['count'])
try:
cursor.execute(
"INSERT INTO p_counts (sampleName, var_, count) "
"VALUES ('%s', %d, %d)" % (
samplename, VAR_, val))
conn.commit()
except psql.IntegrityError as e:
conn = psql.connect(db_url)
cursor = conn.cursor()
if 'duplicate key value violates unique constraint "p_counts_pkey"' in str(e):
cursor.execute(
"SELECT count FROM p_counts WHERE "
"sampleName = '%s' AND var_ = %d" % (
samplename, VAR_))
new_val = cursor.fetchall()[0][0] + val
cursor.execute(
"INSERT INTO p_counts (sampleName, var_, count) "
"VALUES ('%s', %d, %d)" % (
samplename, VAR_, val))
"UPDATE p_counts SET count=%d WHERE "
"sampleName = '%s' AND var_ = %d" % (
new_val, samplename, VAR_))
conn.commit()
except psql.IntegrityError as e:
conn = psql.connect(db_url)
cursor = conn.cursor()
if 'duplicate key value violates unique constraint "p_counts_pkey"' in str(e):
cursor.execute(
"SELECT count FROM p_counts WHERE "
"sampleName = '%s' AND var_ = %d" % (
samplename, VAR_))
new_val = cursor.fetchall()[0][0] + val
cursor.execute(
"UPDATE p_counts SET count=%d WHERE "
"sampleName = '%s' AND var_ = %d" % (
new_val, samplename, VAR_))
conn.commit()
except Exception:
print(samplename, VAR_, "!" + str(row['count']) + "!")
except Exception as e:
error = (samplename, VAR_, "!" + str(row['count']) + ":" +
str(e))
if error not in list_of_errors:
list_of_errors.append(error)
print('Error ', error)
conn = psql.connect(db_url)
cursor = conn.cursor()
err += 1
continue


assert err == 0, '\n'.join(list_of_errors)
1 change: 1 addition & 0 deletions postgres/scripts/tables/Country.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -84,3 +84,4 @@ Yemen Yemen
Black Sea
Dead Sea
Adriatic Sea
Uzbekistan
2 changes: 1 addition & 1 deletion samples/AlbaSanchez_a1.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ samplename original_varname acc_varname groupid count percentage
AlbaSanchez_a1 Abies pinsapo Abies pinsapo TRSH 14 4.5016077
AlbaSanchez_a1 Alnus Alnus TRSH 1 0.32154341
AlbaSanchez_a1 Betula Betula TRSH 2 0.64308682
AlbaSanchez_a1 Daphne gnidium t. Daphne DWAR 14 4.5016077
AlbaSanchez_a1 Daphne gnidium t. Daphne TRSH 14 4.5016077
AlbaSanchez_a1 Erica scoparia t. Erica arborea-type TRSH 1 0.32154341
AlbaSanchez_a1 Olea Olea europaea TRSH 7 2.2508039
AlbaSanchez_a1 Pinus pinea/halepensis t. Pinus halepensis-type TRSH 38 12.21865
Expand Down
2 changes: 1 addition & 1 deletion samples/AlbaSanchez_a11.tsv
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
samplename original_varname acc_varname groupid count percentage
AlbaSanchez_a11 Abies pinsapo Abies pinsapo TRSH 4 1.1363636
AlbaSanchez_a11 Daphne gnidium t. Daphne DWAR 1 0.28409091
AlbaSanchez_a11 Daphne gnidium t. Daphne TRSH 1 0.28409091
AlbaSanchez_a11 Olea Olea europaea TRSH 8 2.2727273
AlbaSanchez_a11 Pinus pinea/halepensis t. Pinus halepensis-type TRSH 196 55.681818
AlbaSanchez_a11 Pinus pinaster Pinus pinaster TRSH 1 0.28409091
Expand Down
2 changes: 1 addition & 1 deletion samples/AlbaSanchez_a14.tsv
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
samplename original_varname acc_varname groupid count percentage
AlbaSanchez_a14 Abies pinsapo Abies pinsapo TRSH 47 15.210356
AlbaSanchez_a14 Corylus Corylus TRSH 1 0.3236246
AlbaSanchez_a14 Daphne gnidium t. Daphne DWAR 1 0.3236246
AlbaSanchez_a14 Daphne gnidium t. Daphne TRSH 1 0.3236246
AlbaSanchez_a14 Erica scoparia t. Erica arborea-type TRSH 3 0.97087379
AlbaSanchez_a14 Jasminum t. Jasminum TRSH 1 0.3236246
AlbaSanchez_a14 Juniperus t. Juniperus-type TRSH 3 0.97087379
Expand Down
2 changes: 1 addition & 1 deletion samples/AlbaSanchez_a23.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@ samplename original_varname acc_varname groupid count percentage
AlbaSanchez_a23 Abies pinsapo Abies pinsapo TRSH 4 1.4388489
AlbaSanchez_a23 Alnus Alnus TRSH 2 0.71942446
AlbaSanchez_a23 Betula Betula TRSH 1 0.35971223
AlbaSanchez_a23 Daphne gnidium t. Daphne DWAR 1 0.35971223
AlbaSanchez_a23 Daphne gnidium t. Daphne TRSH 1 0.35971223
AlbaSanchez_a23 Erica scoparia t. Erica arborea-type TRSH 5 1.7985612
AlbaSanchez_a23 Eucalyptus Eucalyptus TRSH 1 0.35971223
AlbaSanchez_a23 Juniperus t. Juniperus-type TRSH 12 4.3165468
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2 changes: 1 addition & 1 deletion samples/AlbaSanchez_a31.tsv
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Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
samplename original_varname acc_varname groupid count percentage
AlbaSanchez_a31 Daphne gnidium t. Daphne DWAR 19 12.5
AlbaSanchez_a31 Daphne gnidium t. Daphne TRSH 19 12.5
AlbaSanchez_a31 Juniperus t. Juniperus-type TRSH 1 0.65789474
AlbaSanchez_a31 Olea Olea europaea TRSH 11 7.2368421
AlbaSanchez_a31 Pinus pinea/halepensis t. Pinus halepensis-type TRSH 26 17.105263
Expand Down
2 changes: 1 addition & 1 deletion samples/AlbaSanchez_a37.tsv
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
samplename original_varname acc_varname groupid count percentage
AlbaSanchez_a37 Abies pinsapo Abies pinsapo TRSH 13 3.2418953
AlbaSanchez_a37 Daphne gnidium t. Daphne DWAR 18 4.4887781
AlbaSanchez_a37 Daphne gnidium t. Daphne TRSH 18 4.4887781
AlbaSanchez_a37 Erica scoparia t. Erica arborea-type TRSH 1 0.24937656
AlbaSanchez_a37 Olea Olea europaea TRSH 105 26.184539
AlbaSanchez_a37 Pinus pinea/halepensis t. Pinus halepensis-type TRSH 22 5.4862843
Expand Down
2 changes: 1 addition & 1 deletion samples/AlbaSanchez_a5.tsv
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
samplename original_varname acc_varname groupid count percentage
AlbaSanchez_a5 Abies pinsapo Abies pinsapo TRSH 16 5.0955414
AlbaSanchez_a5 Daphne gnidium t. Daphne DWAR 6 1.910828
AlbaSanchez_a5 Daphne gnidium t. Daphne TRSH 6 1.910828
AlbaSanchez_a5 Erica scoparia t. Erica arborea-type TRSH 1 0.31847134
AlbaSanchez_a5 Eucalyptus Eucalyptus TRSH 2 0.63694268
AlbaSanchez_a5 Ligustrum Ligustrum TRSH 1 0.31847134
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2 changes: 1 addition & 1 deletion samples/AlbaSanchez_a67.tsv
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
samplename original_varname acc_varname groupid count percentage
AlbaSanchez_a67 Cedrus atlantica Cedrus TRSH 189 64.505119
AlbaSanchez_a67 Daphne gnidium t. Daphne DWAR 4 1.3651877
AlbaSanchez_a67 Daphne gnidium t. Daphne TRSH 4 1.3651877
AlbaSanchez_a67 Olea Olea europaea TRSH 51 17.406143
AlbaSanchez_a67 Pinus pinea/halepensis t. Pinus halepensis-type TRSH 16 5.4607509
AlbaSanchez_a67 Quercus evergreen Quercus ilex-type TRSH 24 8.1911263
Expand Down
2 changes: 1 addition & 1 deletion samples/AlbaSanchez_a73.tsv
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
samplename original_varname acc_varname groupid count percentage
AlbaSanchez_a73 Cedrus atlantica Cedrus TRSH 10 3.30033
AlbaSanchez_a73 Daphne gnidium t. Daphne DWAR 1 0.330033
AlbaSanchez_a73 Daphne gnidium t. Daphne TRSH 1 0.330033
AlbaSanchez_a73 Juniperus t. Juniperus-type TRSH 3 0.99009901
AlbaSanchez_a73 Olea Olea europaea TRSH 7 2.310231
AlbaSanchez_a73 Quercus evergreen Quercus ilex-type TRSH 274 90.429043
Expand Down
28 changes: 14 additions & 14 deletions samples/Antipina_Galimov_a1.tsv
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Original file line number Diff line number Diff line change
@@ -1,17 +1,17 @@
samplename original_varname acc_varname groupid count percentage
Antipina_Galimov_a1 Abies Abies TRSH 2 0.36166365
Antipina_Galimov_a1 Alnus incana Alnus glutinosa-type TRSH 13 2.3508137
Antipina_Galimov_a1 Betula nana-type Betula nana-type DWAR 8 1.4466546
Antipina_Galimov_a1 Betula alba-type Betula pubescens-type TRSH 152 27.486438
Antipina_Galimov_a1 Ericaceae Ericales (tetrad) DWAR 27 4.8824593
Antipina_Galimov_a1 Picea Picea TRSH 12 2.1699819
Antipina_Galimov_a1 Pinus sibirica Pinus cembra-type TRSH 2 0.36166365
Antipina_Galimov_a1 Pinus sylvestris Pinus sylvestris-type TRSH 322 58.227848
Antipina_Galimov_a1 Rosaceae Rosaceae TRSH 1 0.18083183
Antipina_Galimov_a1 Artemisia Artemisia HERB 9 1.6274864
Antipina_Galimov_a1 Ranunculaceae Ranunculaceae HERB 1 0.18083183
Antipina_Galimov_a1 Galium Rubiaceae HERB 1 0.18083183
Antipina_Galimov_a1 Polypodiaceae Monolete fern spores VACR 3 0.54249548
Antipina_Galimov_a1 Abies Abies TRSH 2 0.11409013
Antipina_Galimov_a1 Alnus incana Alnus glutinosa-type TRSH 13 0.74158585
Antipina_Galimov_a1 Betula nana-type Betula nana-type DWAR 8 0.45636052
Antipina_Galimov_a1 Betula alba-type Betula pubescens-type TRSH 152 8.67085
Antipina_Galimov_a1 Ericaceae Ericales (tetrad) DWAR 27 1.5402168
Antipina_Galimov_a1 Picea Picea TRSH 12 0.68454079
Antipina_Galimov_a1 Pinus sibirica Pinus cembra-type TRSH 2 0.11409013
Antipina_Galimov_a1 Pinus sylvestris Pinus sylvestris-type TRSH 322 18.368511
Antipina_Galimov_a1 Rosaceae Rosaceae TRSH 1 0.057045066
Antipina_Galimov_a1 Artemisia Artemisia HERB 9 0.51340559
Antipina_Galimov_a1 Ranunculaceae Ranunculaceae HERB 1 0.057045066
Antipina_Galimov_a1 Galium Rubiaceae HERB 1 0.057045066
Antipina_Galimov_a1 Polypodiaceae Monolete fern spores VACR 3 0.1711352
Antipina_Galimov_a1 Sphagnum Sphagnum BRYO 1200 68.454079
Antipina_Galimov_a1 Varia Indeterminable: unknown INUN 1
Antipina_Galimov_a1 Lycopodium (grains/tablet) Lycopodium (spores/tablet) NOPO 32
Antipina_Galimov_a1 Sphagnum Sphagnum NOPO 1200
34 changes: 17 additions & 17 deletions samples/Antipina_Galimov_a2.tsv
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Original file line number Diff line number Diff line change
@@ -1,22 +1,22 @@
samplename original_varname acc_varname groupid count percentage
Antipina_Galimov_a2 Abies Abies TRSH 2 0.35714286
Antipina_Galimov_a2 Alnus incana Alnus glutinosa-type TRSH 5 0.89285714
Antipina_Galimov_a2 Alnus viridis subsp. fruticosa Alnus viridis TRSH 2 0.35714286
Antipina_Galimov_a2 Betula nana-type Betula nana-type DWAR 31 5.5357143
Antipina_Galimov_a2 Betula alba-type Betula pubescens-type TRSH 62 11.071429
Antipina_Galimov_a2 Ericaceae Ericales (tetrad) DWAR 23 4.1071429
Antipina_Galimov_a2 Picea Picea TRSH 14 2.5
Antipina_Galimov_a2 Pinus sibirica Pinus cembra-type TRSH 10 1.7857143
Antipina_Galimov_a2 Pinus sylvestris Pinus sylvestris-type TRSH 374 66.785714
Antipina_Galimov_a2 Artemisia Artemisia HERB 3 0.53571429
Antipina_Galimov_a2 Cyperaceae Cyperaceae HERB 1 0.17857143
Antipina_Galimov_a2 Ranunculaceae Ranunculaceae HERB 2 0.35714286
Antipina_Galimov_a2 Bryales Bryophyte spores BRYO 14 2.5
Antipina_Galimov_a2 Equisetum Equisetum VACR 8 1.4285714
Antipina_Galimov_a2 Polypodiaceae Monolete fern spores VACR 8 1.4285714
Antipina_Galimov_a2 Pteridium aquilinum Pteridium aquilinum VACR 1 0.17857143
Antipina_Galimov_a2 Abies Abies TRSH 2 0.27472527
Antipina_Galimov_a2 Alnus incana Alnus glutinosa-type TRSH 5 0.68681319
Antipina_Galimov_a2 Alnus viridis subsp. fruticosa Alnus viridis TRSH 2 0.27472527
Antipina_Galimov_a2 Betula nana-type Betula nana-type DWAR 31 4.2582418
Antipina_Galimov_a2 Betula alba-type Betula pubescens-type TRSH 62 8.5164835
Antipina_Galimov_a2 Ericaceae Ericales (tetrad) DWAR 23 3.1593407
Antipina_Galimov_a2 Picea Picea TRSH 14 1.9230769
Antipina_Galimov_a2 Pinus sibirica Pinus cembra-type TRSH 10 1.3736264
Antipina_Galimov_a2 Pinus sylvestris Pinus sylvestris-type TRSH 374 51.373626
Antipina_Galimov_a2 Artemisia Artemisia HERB 3 0.41208791
Antipina_Galimov_a2 Cyperaceae Cyperaceae HERB 1 0.13736264
Antipina_Galimov_a2 Ranunculaceae Ranunculaceae HERB 2 0.27472527
Antipina_Galimov_a2 Bryales Bryophyte spores BRYO 14 1.9230769
Antipina_Galimov_a2 Equisetum Equisetum VACR 8 1.0989011
Antipina_Galimov_a2 Polypodiaceae Monolete fern spores VACR 8 1.0989011
Antipina_Galimov_a2 Pteridium aquilinum Pteridium aquilinum VACR 1 0.13736264
Antipina_Galimov_a2 Sphagnum Sphagnum BRYO 168 23.076923
Antipina_Galimov_a2 Amphitrema Amphitrema RHIZ 92
Antipina_Galimov_a2 Arcella Arcella RHIZ 37
Antipina_Galimov_a2 Assulina Assulina RHIZ 22
Antipina_Galimov_a2 Rhizopoda Rhizopoda RHIZ 161
Antipina_Galimov_a2 Sphagnum Sphagnum NOPO 168
32 changes: 16 additions & 16 deletions samples/Antipina_a1.tsv
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Original file line number Diff line number Diff line change
@@ -1,19 +1,19 @@
samplename original_varname acc_varname groupid count percentage
Antipina_a1 Abies Abies TRSH 1 0.18939394
Antipina_a1 Betula nana-type Betula nana-type DWAR 10 1.8939394
Antipina_a1 Betula alba-type Betula pubescens-type TRSH 35 6.6287879
Antipina_a1 Picea Picea TRSH 62 11.742424
Antipina_a1 Pinus sibirica Pinus cembra-type TRSH 5 0.9469697
Antipina_a1 Pinus sylvestris Pinus sylvestris-type TRSH 283 53.598485
Antipina_a1 Tilia Tilia TRSH 1 0.18939394
Antipina_a1 Chenopodiaceae Chenopodiaceae/Amaranthaceae HERB 2 0.37878788
Antipina_a1 Bistorta vivipara Polygonum viviparum HERB 1 0.18939394
Antipina_a1 Ranunculaceae Ranunculaceae HERB 1 0.18939394
Antipina_a1 Athyrium filix-femina Athyrium filix-femina VACR 13 2.4621212
Antipina_a1 Bryales Bryophyte spores BRYO 18 3.4090909
Antipina_a1 Dryopteris Dryopteris-type VACR 3 0.56818182
Antipina_a1 Polypodiaceae Monolete fern spores VACR 91 17.234848
Antipina_a1 Pteridium Pteridium aquilinum VACR 2 0.37878788
Antipina_a1 Abies Abies TRSH 1 0.09469697
Antipina_a1 Betula nana-type Betula nana-type DWAR 10 0.9469697
Antipina_a1 Betula alba-type Betula pubescens-type TRSH 35 3.3143939
Antipina_a1 Picea Picea TRSH 62 5.8712121
Antipina_a1 Pinus sibirica Pinus cembra-type TRSH 5 0.47348485
Antipina_a1 Pinus sylvestris Pinus sylvestris-type TRSH 283 26.799242
Antipina_a1 Tilia Tilia TRSH 1 0.09469697
Antipina_a1 Chenopodiaceae Chenopodiaceae/Amaranthaceae HERB 2 0.18939394
Antipina_a1 Bistorta vivipara Polygonum viviparum HERB 1 0.09469697
Antipina_a1 Ranunculaceae Ranunculaceae HERB 1 0.09469697
Antipina_a1 Athyrium filix-femina Athyrium filix-femina VACR 13 1.2310606
Antipina_a1 Bryales Bryophyte spores BRYO 18 1.7045455
Antipina_a1 Dryopteris Dryopteris-type VACR 3 0.28409091
Antipina_a1 Polypodiaceae Monolete fern spores VACR 91 8.6174242
Antipina_a1 Pteridium Pteridium aquilinum VACR 2 0.18939394
Antipina_a1 Sphagnum Sphagnum BRYO 528 50
Antipina_a1 Arcella Arcella RHIZ 14
Antipina_a1 Assulina Assulina RHIZ 1
Antipina_a1 Sphagnum Sphagnum NOPO 528
30 changes: 15 additions & 15 deletions samples/Antipina_a10.tsv
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Original file line number Diff line number Diff line change
@@ -1,18 +1,18 @@
samplename original_varname acc_varname groupid count percentage
Antipina_a10 Abies Abies TRSH 2 0.60240964
Antipina_a10 Alnus incana Alnus glutinosa-type TRSH 5 1.5060241
Antipina_a10 Betula nana-type Betula nana-type DWAR 16 4.8192771
Antipina_a10 Betula alba-type Betula pubescens-type TRSH 113 34.036145
Antipina_a10 Ericaceae Ericales (tetrad) DWAR 1 0.30120482
Antipina_a10 Picea Picea TRSH 12 3.6144578
Antipina_a10 Pinus sylvestris Pinus sylvestris-type TRSH 148 44.578313
Antipina_a10 Salix Salix TRSH 4 1.2048193
Antipina_a10 Artemisia Artemisia HERB 7 2.1084337
Antipina_a10 Brassicaceae Brassicaceae HERB 1 0.30120482
Antipina_a10 Chenopodiaceae Chenopodiaceae/Amaranthaceae HERB 2 0.60240964
Antipina_a10 Poaceae Poaceae HERB 10 3.0120482
Antipina_a10 Saxifraga Saxifraga HERB 10 3.0120482
Antipina_a10 Polypodiaceae Monolete fern spores VACR 1 0.30120482
Antipina_a10 Abies Abies TRSH 2 0.56818182
Antipina_a10 Alnus incana Alnus glutinosa-type TRSH 5 1.4204545
Antipina_a10 Betula nana-type Betula nana-type DWAR 16 4.5454545
Antipina_a10 Betula alba-type Betula pubescens-type TRSH 113 32.102273
Antipina_a10 Ericaceae Ericales (tetrad) DWAR 1 0.28409091
Antipina_a10 Picea Picea TRSH 12 3.4090909
Antipina_a10 Pinus sylvestris Pinus sylvestris-type TRSH 148 42.045455
Antipina_a10 Salix Salix TRSH 4 1.1363636
Antipina_a10 Artemisia Artemisia HERB 7 1.9886364
Antipina_a10 Brassicaceae Brassicaceae HERB 1 0.28409091
Antipina_a10 Chenopodiaceae Chenopodiaceae/Amaranthaceae HERB 2 0.56818182
Antipina_a10 Poaceae Poaceae HERB 10 2.8409091
Antipina_a10 Saxifraga Saxifraga HERB 10 2.8409091
Antipina_a10 Polypodiaceae Monolete fern spores VACR 1 0.28409091
Antipina_a10 Sphagnum Sphagnum BRYO 20 5.6818182
Antipina_a10 Varia Indeterminable: unknown INUN 10
Antipina_a10 Sphagnum Sphagnum NOPO 20
Antipina_a10 Tilletia Tilletia FUNG 1
32 changes: 16 additions & 16 deletions samples/Antipina_a11.tsv
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Original file line number Diff line number Diff line change
@@ -1,19 +1,19 @@
samplename original_varname acc_varname groupid count percentage
Antipina_a11 Alnus incana Alnus glutinosa-type TRSH 3 0.55045872
Antipina_a11 Betula nana-type Betula nana-type DWAR 32 5.8715596
Antipina_a11 Betula alba-type Betula pubescens-type TRSH 88 16.146789
Antipina_a11 Ericaceae Ericales (tetrad) DWAR 17 3.1192661
Antipina_a11 Picea Picea TRSH 18 3.3027523
Antipina_a11 Pinus sibirica Pinus cembra-type TRSH 13 2.3853211
Antipina_a11 Pinus sylvestris Pinus sylvestris-type TRSH 345 63.302752
Antipina_a11 Salix Salix TRSH 1 0.18348624
Antipina_a11 Artemisia Artemisia HERB 7 1.2844037
Antipina_a11 Cyperaceae Cyperaceae HERB 6 1.1009174
Antipina_a11 Plantago Plantago HERB 1 0.18348624
Antipina_a11 Poaceae Poaceae HERB 6 1.1009174
Antipina_a11 Bryales Bryophyte spores BRYO 6 1.1009174
Antipina_a11 Polypodiaceae Monolete fern spores VACR 2 0.36697248
Antipina_a11 Centropyxis Centropyxis ALGA 1 0.18348624
Antipina_a11 Alnus incana Alnus glutinosa-type TRSH 3 0.41666667
Antipina_a11 Betula nana-type Betula nana-type DWAR 32 4.4444444
Antipina_a11 Betula alba-type Betula pubescens-type TRSH 88 12.222222
Antipina_a11 Ericaceae Ericales (tetrad) DWAR 17 2.3611111
Antipina_a11 Picea Picea TRSH 18 2.5
Antipina_a11 Pinus sibirica Pinus cembra-type TRSH 13 1.8055556
Antipina_a11 Pinus sylvestris Pinus sylvestris-type TRSH 345 47.916667
Antipina_a11 Salix Salix TRSH 1 0.13888889
Antipina_a11 Artemisia Artemisia HERB 7 0.97222222
Antipina_a11 Cyperaceae Cyperaceae HERB 6 0.83333333
Antipina_a11 Plantago Plantago HERB 1 0.13888889
Antipina_a11 Poaceae Poaceae HERB 6 0.83333333
Antipina_a11 Bryales Bryophyte spores BRYO 6 0.83333333
Antipina_a11 Polypodiaceae Monolete fern spores VACR 2 0.27777778
Antipina_a11 Sphagnum Sphagnum BRYO 175 24.305556
Antipina_a11 Centropyxis Centropyxis ALGA 1 0.13888889
Antipina_a11 Arcella Arcella RHIZ 2
Antipina_a11 Assulina Assulina RHIZ 3
Antipina_a11 Sphagnum Sphagnum NOPO 175
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