Code

CovModel: Update and Refactoring#109

Code

Merged

MuellerSeb merged 70 commits intodevelopGeoStat-Framework/GSTools:developfrom cov_refactorGeoStat-Framework/GSTools:cov_refactorCopy head branch name to clipboardNov 18, 2020

+2,150-1,262

Commits

Commits on Nov 10, 2020

• CovModel: add 'rescale' argument to rescale the len_scale

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• Cleanup: remove doctest calls

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• covmodel: add attribute 'len_rescaled' which is the rescaled len_scale

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• CovModel: rewrite Gaussian covmodel to use 'cor' and 'rescale'

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• CovModel: move **opt_arg doc to main class

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• CovModel: rewrite Exponential covmodel to use 'cor' and 'rescale'

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• CovModel: rewrite Rational and Stable covmodel to use 'cor' and 'rescale'

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Commits on Nov 11, 2020

• CovModel: rewrite Matern covmodel to use 'cor' and 'rescale'

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• CovModel: rewrite Linear, Circular and Spherical covmodel to use 'cor' and 'rescale'

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• CovModel: replace the 'Intersection' model with the 'HyperSpherical' model, since it's a better implementation

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• CovModel: replace the 'Intersection' model with the 'HyperSpherical' model in the package imports and documentation

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• covmodel: comment update

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• CovModel: add the Super-Spherical model

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• SuperSpherical: doc fix

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• CovModel: add the JBessel hole model

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• TPLmodels: refactor to use 'cor' and 'rescale'; use a new base-class for TPL models derived from super-positioning

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• Doc: minor fixes

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• TPLCovModel: tweak base class to provide cor and correlation like derived classes

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  550e02e

• Merge branch 'develop' of github.com:GeoStat-Framework/GSTools into cov_refactor

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• CovModel: add TPLSimple model

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Commits on Nov 13, 2020

• field: unify rotation and anisotropy; simplify code

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• CovModel: add [an]isometrize method; simplify code

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• tests: adopt tests: don't allow high-dim input in lower dimensions in spatial routines in CovModel

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• CovModel: more details in documentation

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• Tools: add rotated_main_axes routine to determine axes from rotation angles

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• CovModel: simplify Rational model

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• Tools: make use of rotated_main_axes in CovModel and Examples

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Commits on Nov 14, 2020

• CovModel: Fitting anisotropy to directional empirical variograms; variogram routines along axis added

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• CovModel: update plotting routines: add axis routines; forward kwargs

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• Examples: demonstrate fitting of anisotropy

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• CovModel: fitting with weights respects directional variogram now; restructure+cleanup fit routine

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  4bdceca

• CovModel: always use floats for 'angles' and 'anis'

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• CovModel: always use floats for 'len_scale'

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• Tools: add a string formatter to pretty-print lists of floats

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• CovModel: always use floats for opt_args; better formatting of CovModel string representation

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• Examples: demonstrate using bin-counts as weights during variogram fitting

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• tools/misc: f-string not working in py35; use format

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• CovModel: use precision as privat attribute to set printing format

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• Examples: pimp variogram plot

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• Field: better printing format

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• CovModel.check_arg_in_bounds: allow checking lists

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Commits on Nov 15, 2020

• CovModel: add bounds for 'anis' since we can fit it now

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• CovModel: add arg_list attribute to get list of values; also for isotropic arguments only

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• CovModel.fit: better handling of bounds for anis when fitting directional variogram

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Commits on Nov 16, 2020

• Examples: add overview gallery to tutorials page in Docs

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• Docs: remove Overview gallery again: TOC-tree struggles

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  49589e7

• Doc: resolve minor problems

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  c605cd2

• Fix some typos

  LSchueler

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  f660a48

Commits on Nov 17, 2020

• CovModel: add routine 'check_dim'

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• CovModel: skip bound checking, when no bounds present (e.g. during init); add AttributeWarning class to warnings

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• CovModels: add dim checks to the linear, circular and spherical model

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Commits on Nov 18, 2020

• CovModel: move spectral_rad_pdf to tools

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• CovModel: outsource percentile_scale to tools

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• CovModel: add 'set_opt_arg' routine to tools to shrink __init__

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• CovModel: move '[set/check]_arg_bounds' routines to tools

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• CovModel: add 'set_dim' to tools

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• CovModel: add '_init_subclass' to tools

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• CovModel: add more tests for class functionality

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• CovModel: minor simplifications for TPL models

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• Tests: covmodel.tools to 100% coverage

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• CovModel: test *_axis methods and cor_spatial

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• CovModel: better testing TPL models

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• CovModel: check special models; better check-case for TPL vario fitting

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• CovModel: further testing of properties; default_opt_args always empty now; check var_raw with TPL models; skip pykrige routine default vals

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• CovModel: test all axis specific routines

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• CovModel.fit: remove redundant 'dict' option for init_guess

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• CovModel.fit: more testing

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• CovModel.fit: weights testing

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• Tests: used model method for main_axes

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• Docs: remove overview gallery hack again

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