feat(itk-dicom): Browser package configuration

InsightSoftwareConsortium · Sep 8, 2022 · 6cc2574 · 6cc2574
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diff --git a/dist/dicom/cypress.config.ts b/dist/dicom/cypress.config.ts
@@ -0,0 +1,10 @@
+import { defineConfig } from "cypress";
+
+export default defineConfig({
+  e2e: {
+    defaultCommandTimeout: 5000,
+    setupNodeEvents(on, config) {
+      // implement node event listeners here
+    },
+  },
+});
diff --git a/dist/dicom/cypress/e2e/structured_report_to_text.cy.ts b/dist/dicom/cypress/e2e/structured_report_to_text.cy.ts
@@ -0,0 +1,14 @@
+describe('structuredReportToText', () => {
+  beforeEach(function() {
+    cy.visit('/')
+
+    const fileName = '88.33-comprehensive-SR.dcm'
+    const testFilePath = `../../build-emscripten/ExternalData/test/Input/${fileName}`
+    cy.readFile(testFilePath, null).as('inputData')
+  })
+
+  it('runs and produces the expected text', function() {
+    cy.get('input[type=file]').selectFile({ contents: new Uint8Array(this.inputData), fileName: 'inputData.dcm' })
+    cy.get('textarea').contains('Comprehensive SR Document')
+  })
+})
diff --git a/dist/dicom/cypress/support/commands.ts b/dist/dicom/cypress/support/commands.ts
@@ -0,0 +1,37 @@
+/// <reference types="cypress" />
+// ***********************************************
+// This example commands.ts shows you how to
+// create various custom commands and overwrite
+// existing commands.
+//
+// For more comprehensive examples of custom
+// commands please read more here:
+// https://on.cypress.io/custom-commands
+// ***********************************************
+//
+//
+// -- This is a parent command --
+// Cypress.Commands.add('login', (email, password) => { ... })
+//
+//
+// -- This is a child command --
+// Cypress.Commands.add('drag', { prevSubject: 'element'}, (subject, options) => { ... })
+//
+//
+// -- This is a dual command --
+// Cypress.Commands.add('dismiss', { prevSubject: 'optional'}, (subject, options) => { ... })
+//
+//
+// -- This will overwrite an existing command --
+// Cypress.Commands.overwrite('visit', (originalFn, url, options) => { ... })
+//
+// declare global {
+//   namespace Cypress {
+//     interface Chainable {
+//       login(email: string, password: string): Chainable<void>
+//       drag(subject: string, options?: Partial<TypeOptions>): Chainable<Element>
+//       dismiss(subject: string, options?: Partial<TypeOptions>): Chainable<Element>
+//       visit(originalFn: CommandOriginalFn, url: string, options: Partial<VisitOptions>): Chainable<Element>
+//     }
+//   }
+// }
diff --git a/dist/dicom/cypress/support/compareImageToBaseline.ts b/dist/dicom/cypress/support/compareImageToBaseline.ts
@@ -0,0 +1,9 @@
+const compareImageToBaseline = (itk, testImage, baselineImage) => {
+  expect(testImage.imageType, 'imageType').to.deep.equal(baselineImage.imageType)
+  expect(testImage.origin, 'origin').to.deep.equal(baselineImage.origin)
+  expect(testImage.spacing, 'spacing').to.deep.equal(baselineImage.spacing)
+  expect(testImage.size, 'size').to.deep.equal(baselineImage.size)
+  expect(testImage.data, 'data').to.deep.equal(baselineImage.data)
+}
+
+export default compareImageToBaseline
diff --git a/dist/dicom/cypress/support/e2e.ts b/dist/dicom/cypress/support/e2e.ts
@@ -0,0 +1,20 @@
+// ***********************************************************
+// This example support/e2e.ts is processed and
+// loaded automatically before your test files.
+//
+// This is a great place to put global configuration and
+// behavior that modifies Cypress.
+//
+// You can change the location of this file or turn off
+// automatically serving support files with the
+// 'supportFile' configuration option.
+//
+// You can read more here:
+// https://on.cypress.io/configuration
+// ***********************************************************
+
+// Import commands.js using ES2015 syntax:
+import './commands'
+
+// Alternatively you can use CommonJS syntax:
+// require('./commands')
diff --git a/dist/dicom/index.html b/dist/dicom/index.html
@@ -0,0 +1,43 @@
+<!DOCTYPE html>
+<html>
+  <head>
+    <title>structured-report-to-text example</title>
+    <meta http-equiv="Content-type" content="text/html; charset=utf-8" />
+    <style>
+      html, body {
+        height: 90%;
+      }
+
+      textarea {
+        resize: none;
+        overflow-y: scroll;
+        position: absolute;
+        box-sizing: border-box;
+        width: 600px;
+        height: 600px;
+        bottom: 0px;
+        left: 0px;
+        top: 50px;
+      }
+    </style>
+    <script src="https://cdn.jsdelivr.net/npm/[email protected]/dist/xstate.min.js"></script>
+  </head>
+
+  <body>
+    <!-- Input selector -->
+    <div>
+      <label>Select dicom file:</label>
+      <input name="inputFile" type="file" />
+    </div>
+
+    <!-- File information -->
+    <div>
+      <textarea readonly name="outputTextArea">Output representation...</textarea>
+      <div name="outputDiv"></div>
+    </div>
+
+    <!-- Javascript -->
+    <script type="module" src="./dist/itk-dicom.js"></script>
+    <script type="module" src="./test/app.js"></script>
+  </body>
+</html>
diff --git a/dist/dicom/package.json b/dist/dicom/package.json
@@ -1,46 +1,52 @@
 {
-  "name": "itk-vite-example",
-  "version": "1.0.2",
-  "description": "This example demonstrates how to use itk-wasm in a Rollup project that targets the browser.",
-  "main": "index.js",
+  "name": "itk-dicom",
+  "version": "0.0.1",
+  "description": "DICOM IO from itk-wasm",
+  "type": "module",
+  "main": "./dist/itk-dicom.umd.cjs",
+  "module": "./dist/itk-dicom.js",
+  "types": "./dist/index.d.ts",
+  "exports": {
+    ".": {
+      "import": "./dist/itk-dicom.js",
+      "require": "./dist/itk-dicom.umd.cjs"
+    }
+  },
   "scripts": {
-    "start": "vite --port 8080",
-    "build": "vite build",
-    "start:production": "vite preview --port 8080",
+    "dev": "vite --port 8173",
+    "build": "tsc && vite build --sourcemap",
+    "build:watch": "tsc && vite build --minify false --mode development --watch",
     "cypress:open": "npx cypress open",
     "cypress:run": "npx cypress run",
     "cypress:runChrome": "npx cypress run --browser chrome",
     "cypress:runFirefox": "npx cypress run --browser firefox",
-    "test:debug": "start-server-and-test start http-get://localhost:8080 cypress:open",
-    "test": "start-server-and-test start:production http-get://localhost:8080 cypress:run",
-    "test:chrome": "start-server-and-test start:production http-get://localhost:8080 cypress:runChrome",
-    "test:firefox": "start-server-and-test start:production http-get://localhost:8080 cypress:runFirefox"
+    "test:debug": "start-server-and-test dev http-get://localhost:8173 cypress:open",
+    "test": "start-server-and-test dev http-get://localhost:8173 cypress:run",
+    "test:chrome": "start-server-and-test dev http-get://localhost:8173 cypress:runChrome",
+    "test:firefox": "start-server-and-test dev http-get://localhost:8173 cypress:runFirefox"
   },
   "repository": {
     "type": "git",
-    "url": "git+https://github.com/InsightSoftwareConsortium/itk-wasm.git"
+    "url": "https://github.com/InsightSoftwareConsortium/itk-wasm.git"
   },
   "keywords": [
     "itk",
-    "rollup",
-    "vite"
+    "dicom"
   ],
   "author": "Matt McCormick <[email protected]>",
   "license": "Apache-2.0",
   "bugs": {
     "url": "https://github.com/InsightSoftwareConsortium/itk-wasm/issues"
   },
-  "homepage": "https://github.com/InsightSoftwareConsortium/itk-wasm#readme",
+  "homepage": "https://wasm.itk.org",
   "dependencies": {
-    "curry": "^1.2.0",
-    "itk-image-io": "^1.0.0-b.18",
-    "itk-mesh-io": "^1.0.0-b.18",
-    "itk-wasm": "^1.0.0-b.18"
+    "itk-wasm": "^1.0.0-b.21"
   },
   "devDependencies": {
-    "cypress": "^10.3.0",
+    "cypress": "^10.7.0",
     "rollup-plugin-copy": "^3.4.0",
     "start-server-and-test": "^1.14.0",
+    "typescript": "^4.7.4",
     "vite": "^3.0.9"
   }
 }
diff --git a/dist/dicom/src/StructuredReportToTextOptions.ts b/dist/dicom/src/StructuredReportToTextOptions.ts
@@ -0,0 +1,55 @@
+interface StructuredReportToTextOptions {
+  /** Accept unknown relationship type */
+  unknownRelationship?: boolean
+
+  /** Accept invalid content item value */
+  invalidItemValue?: boolean
+
+  /** Ignore relationship constraints */
+  ignoreConstraints?: boolean
+
+  /** Ignore content item errors */
+  ignoreItemErrors?: boolean
+
+  /** Skip invalid content items */
+  skipInvalidItems?: boolean
+
+  /** Print no document header */
+  noDocumentHeader?: boolean
+
+  /** Number nested items */
+  numberNestedItems?: boolean
+
+  /** Shorten long item values */
+  shortenLongValues?: boolean
+
+  /** Print SOP Instance UID */
+  printInstanceUid?: boolean
+
+  /** Print short SOP class name */
+  printSopclassShort?: boolean
+
+  /** Print SOP class name */
+  printSopclassLong?: boolean
+
+  /** Print long SOP class name */
+  printSopclassUid?: boolean
+
+  /** Print all codes */
+  printAllCodes?: boolean
+
+  /** Print invalid codes */
+  printInvalidCodes?: boolean
+
+  /** Print template identification */
+  printTemplateId?: boolean
+
+  /** Indicate enhanced encoding mode */
+  indicateEnhanced?: boolean
+
+  /** Use ANSI escape codes */
+  printColor?: boolean
+
+}
+
+export default StructuredReportToTextOptions
diff --git a/dist/dicom/src/StructuredReportToTextResult.ts b/dist/dicom/src/StructuredReportToTextResult.ts
@@ -0,0 +1,10 @@
+interface StructuredReportToTextResult {
+  /** WebWorker used for computation */
+  webWorker: Worker | null
+
+  /** Output text file */
+  outputText: string
+
+}
+
+export default StructuredReportToTextResult
diff --git a/dist/dicom/src/index.ts b/dist/dicom/src/index.ts
@@ -0,0 +1,10 @@
+
+
+import StructuredReportToTextResult from './StructuredReportToTextResult.js'
+export type { StructuredReportToTextResult }
+
+import StructuredReportToTextOptions from './StructuredReportToTextOptions.js'
+export type { StructuredReportToTextOptions }
+
+import structuredReportToText from './structuredReportToText.js'
+export { structuredReportToText }
diff --git a/dist/dicom/src/itkConfigDevelopment.js b/dist/dicom/src/itkConfigDevelopment.js
@@ -0,0 +1,10 @@
+const version = '1.0.0-b.21'
+
+const itkConfig = {
+  pipelineWorkerUrl: '/dist/pipelines/web-workers/pipeline.worker.js',
+  imageIOUrl: `https://cdn.jsdelivr.net/npm/itk-image-io@${version}`,
+  meshIOUrl: `https://cdn.jsdelivr.net/npm/itk-mesh-io@${version}`,
+  pipelinesUrl: '/dist/pipelines'
+}
+
+export default itkConfig